Query 006737
Match_columns 633
No_of_seqs 450 out of 2781
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 13:45:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0338 ATP-dependent RNA heli 100.0 2.5E-42 5.4E-47 367.7 16.3 241 378-631 180-437 (691)
2 KOG0342 ATP-dependent RNA heli 100.0 1.6E-41 3.5E-46 361.6 21.2 251 374-631 77-341 (543)
3 KOG0330 ATP-dependent RNA heli 100.0 1.2E-41 2.5E-46 353.9 18.4 241 377-631 59-311 (476)
4 KOG0331 ATP-dependent RNA heli 100.0 8.1E-41 1.7E-45 366.0 20.4 245 380-631 92-352 (519)
5 KOG0345 ATP-dependent RNA heli 100.0 1.4E-39 3E-44 344.8 23.1 248 379-630 4-265 (567)
6 COG0513 SrmB Superfamily II DN 100.0 4E-39 8.7E-44 361.2 26.1 243 379-631 29-284 (513)
7 KOG0343 RNA Helicase [RNA proc 100.0 4.8E-39 1E-43 345.1 18.5 246 377-631 67-324 (758)
8 KOG0348 ATP-dependent RNA heli 100.0 6.6E-38 1.4E-42 335.6 19.0 257 370-631 127-436 (708)
9 PTZ00110 helicase; Provisional 100.0 3.9E-36 8.4E-41 339.6 28.8 246 377-631 128-388 (545)
10 KOG0346 RNA helicase [RNA proc 100.0 4.2E-37 9.1E-42 323.5 18.0 248 379-632 19-280 (569)
11 KOG0336 ATP-dependent RNA heli 100.0 2.8E-36 6E-41 314.5 20.1 311 310-632 151-477 (629)
12 KOG0347 RNA helicase [RNA proc 100.0 3.2E-37 7E-42 331.1 13.2 200 377-578 179-389 (731)
13 PRK04837 ATP-dependent RNA hel 100.0 2E-35 4.4E-40 324.2 27.1 246 378-631 7-266 (423)
14 KOG0328 Predicted ATP-dependen 100.0 1.8E-36 3.8E-41 304.2 16.1 243 375-632 23-278 (400)
15 PRK10590 ATP-dependent RNA hel 100.0 1.9E-35 4.2E-40 327.5 26.2 243 380-631 2-256 (456)
16 PRK11776 ATP-dependent RNA hel 100.0 1.9E-35 4.2E-40 327.6 25.8 238 379-631 4-253 (460)
17 KOG0340 ATP-dependent RNA heli 100.0 2.6E-36 5.6E-41 311.0 16.7 244 377-630 5-264 (442)
18 PRK11634 ATP-dependent RNA hel 100.0 1.9E-35 4E-40 338.2 25.5 240 378-631 5-256 (629)
19 PRK04537 ATP-dependent RNA hel 100.0 6.8E-35 1.5E-39 331.0 25.7 246 379-631 9-268 (572)
20 PLN00206 DEAD-box ATP-dependen 100.0 1.6E-34 3.5E-39 324.8 27.0 246 377-631 119-378 (518)
21 KOG0326 ATP-dependent RNA heli 100.0 2.4E-36 5.2E-41 307.3 9.8 237 379-631 85-333 (459)
22 KOG0339 ATP-dependent RNA heli 100.0 5.5E-35 1.2E-39 311.3 19.0 251 373-631 217-479 (731)
23 PRK11192 ATP-dependent RNA hel 100.0 5E-34 1.1E-38 314.0 26.8 241 380-631 2-256 (434)
24 KOG0335 ATP-dependent RNA heli 100.0 3.8E-35 8.3E-40 317.0 16.6 246 380-632 75-349 (482)
25 PRK01297 ATP-dependent RNA hel 100.0 1.5E-33 3.2E-38 313.9 24.0 247 378-631 86-346 (475)
26 KOG0333 U5 snRNP-like RNA heli 100.0 2.9E-33 6.3E-38 299.7 20.1 248 377-631 243-528 (673)
27 KOG0334 RNA helicase [RNA proc 100.0 1.2E-33 2.7E-38 323.3 16.5 248 377-631 363-624 (997)
28 KOG0341 DEAD-box protein abstr 100.0 1.8E-34 3.8E-39 299.4 7.7 250 377-631 168-432 (610)
29 KOG0337 ATP-dependent RNA heli 100.0 5E-33 1.1E-37 291.8 13.0 240 379-632 21-273 (529)
30 PTZ00424 helicase 45; Provisio 100.0 2.3E-31 4.9E-36 289.0 25.4 239 378-631 27-278 (401)
31 KOG0327 Translation initiation 100.0 1.7E-31 3.7E-36 278.7 13.5 238 379-631 26-274 (397)
32 KOG4284 DEAD box protein [Tran 100.0 2.3E-31 5.1E-36 289.6 12.1 238 379-631 25-283 (980)
33 KOG0350 DEAD-box ATP-dependent 100.0 3.5E-30 7.6E-35 275.0 17.5 242 380-631 128-440 (620)
34 TIGR03817 DECH_helic helicase/ 100.0 1.5E-29 3.3E-34 294.6 21.2 182 385-580 20-209 (742)
35 KOG0332 ATP-dependent RNA heli 100.0 9E-30 1.9E-34 264.1 13.8 244 371-631 82-341 (477)
36 cd00268 DEADc DEAD-box helicas 100.0 3.1E-28 6.7E-33 239.9 21.9 188 381-579 1-188 (203)
37 KOG0329 ATP-dependent RNA heli 100.0 2.7E-29 5.7E-34 249.6 12.2 241 378-631 41-294 (387)
38 PRK02362 ski2-like helicase; P 100.0 2.3E-27 5E-32 277.3 21.7 179 380-578 2-184 (737)
39 PRK00254 ski2-like helicase; P 100.0 3.6E-27 7.8E-32 275.0 22.9 180 380-578 2-182 (720)
40 PRK01172 ski2-like helicase; P 99.9 3.9E-25 8.5E-30 256.3 22.6 179 380-579 2-183 (674)
41 PRK13767 ATP-dependent helicas 99.9 3.7E-25 8.1E-30 262.3 21.9 188 386-578 18-220 (876)
42 PF00270 DEAD: DEAD/DEAH box h 99.9 3E-25 6.4E-30 211.3 16.7 164 403-579 1-166 (169)
43 COG1201 Lhr Lhr-like helicases 99.9 3.8E-25 8.2E-30 254.6 19.8 186 386-579 8-197 (814)
44 PRK09401 reverse gyrase; Revie 99.9 1.2E-24 2.5E-29 262.5 24.5 215 397-631 77-339 (1176)
45 KOG0344 ATP-dependent RNA heli 99.9 1.3E-25 2.7E-30 245.0 13.5 241 384-631 141-398 (593)
46 PLN03137 ATP-dependent DNA hel 99.9 6.9E-25 1.5E-29 257.3 19.6 180 381-579 437-630 (1195)
47 TIGR02621 cas3_GSU0051 CRISPR- 99.9 1.4E-24 3E-29 251.2 21.7 216 397-631 12-283 (844)
48 TIGR00614 recQ_fam ATP-depende 99.9 1.4E-24 3.1E-29 241.7 18.3 162 396-579 6-176 (470)
49 PRK14701 reverse gyrase; Provi 99.9 1.6E-23 3.4E-28 257.9 25.1 225 388-631 66-341 (1638)
50 PRK11057 ATP-dependent DNA hel 99.9 9.9E-24 2.1E-28 241.7 19.3 171 386-579 9-188 (607)
51 TIGR01389 recQ ATP-dependent D 99.9 8.7E-24 1.9E-28 241.7 18.5 164 393-579 4-176 (591)
52 TIGR01054 rgy reverse gyrase. 99.9 2.5E-23 5.4E-28 251.2 22.6 222 389-630 66-336 (1171)
53 COG1205 Distinct helicase fami 99.9 3E-22 6.4E-27 235.4 21.4 183 386-579 55-246 (851)
54 TIGR00580 mfd transcription-re 99.9 1.4E-21 3E-26 231.2 22.4 167 386-578 436-612 (926)
55 PRK10917 ATP-dependent DNA hel 99.9 2.5E-21 5.3E-26 224.6 22.0 165 388-578 248-422 (681)
56 PRK10689 transcription-repair 99.9 3.1E-21 6.8E-26 232.6 20.8 164 389-578 589-761 (1147)
57 PRK09751 putative ATP-dependen 99.9 1.6E-21 3.6E-26 236.8 17.8 155 421-578 1-172 (1490)
58 TIGR00643 recG ATP-dependent D 99.9 6.9E-21 1.5E-25 219.2 21.6 165 389-578 224-399 (630)
59 COG1204 Superfamily II helicas 99.9 1.7E-21 3.6E-26 226.4 16.3 177 385-580 15-195 (766)
60 KOG0952 DNA/RNA helicase MER3/ 99.9 4E-21 8.6E-26 219.7 16.3 229 396-631 105-360 (1230)
61 COG1202 Superfamily II helicas 99.8 1.1E-20 2.3E-25 205.2 15.2 234 379-630 194-450 (830)
62 PRK11664 ATP-dependent RNA hel 99.8 1.5E-19 3.2E-24 212.3 18.4 199 406-631 10-223 (812)
63 PHA02653 RNA helicase NPH-II; 99.8 1.7E-19 3.8E-24 207.1 17.5 158 403-579 166-335 (675)
64 TIGR01970 DEAH_box_HrpB ATP-de 99.8 2.8E-19 6.1E-24 209.7 19.4 200 405-631 6-220 (819)
65 KOG0349 Putative DEAD-box RNA 99.8 9.3E-20 2E-24 192.2 13.2 120 455-578 286-413 (725)
66 COG0514 RecQ Superfamily II DN 99.8 7.1E-20 1.5E-24 204.8 13.0 165 392-579 7-180 (590)
67 PRK12899 secA preprotein trans 99.8 1.7E-19 3.7E-24 208.6 15.6 148 382-547 65-228 (970)
68 TIGR01587 cas3_core CRISPR-ass 99.8 3.9E-19 8.4E-24 190.7 14.7 148 418-579 1-169 (358)
69 TIGR03158 cas3_cyano CRISPR-as 99.8 1.3E-18 2.8E-23 187.6 18.8 161 405-579 1-195 (357)
70 smart00487 DEXDc DEAD-like hel 99.8 5.9E-18 1.3E-22 162.0 17.6 171 396-579 3-174 (201)
71 KOG0947 Cytoplasmic exosomal R 99.7 4E-17 8.6E-22 185.4 18.8 185 397-609 294-481 (1248)
72 PRK05580 primosome assembly pr 99.7 1.8E-16 3.8E-21 183.9 23.0 153 401-579 144-308 (679)
73 PHA02558 uvsW UvsW helicase; P 99.7 2.8E-17 6.2E-22 184.7 15.7 151 399-578 112-262 (501)
74 COG4581 Superfamily II RNA hel 99.7 3E-17 6.6E-22 192.2 14.1 165 394-582 113-277 (1041)
75 KOG0951 RNA helicase BRR2, DEA 99.7 8.4E-17 1.8E-21 186.5 13.5 239 385-632 295-558 (1674)
76 KOG0352 ATP-dependent DNA heli 99.7 1.3E-16 2.9E-21 168.7 11.1 168 389-579 6-190 (641)
77 KOG0351 ATP-dependent DNA heli 99.7 2.4E-16 5.3E-21 185.3 13.9 171 389-579 252-434 (941)
78 PRK13766 Hef nuclease; Provisi 99.6 3E-15 6.5E-20 176.6 19.3 160 399-575 13-172 (773)
79 KOG0353 ATP-dependent DNA heli 99.6 1.2E-15 2.7E-20 159.1 10.7 180 382-580 74-265 (695)
80 KOG0354 DEAD-box like helicase 99.6 3.4E-15 7.3E-20 169.6 15.1 178 386-579 47-225 (746)
81 cd00046 DEXDc DEAD-like helica 99.6 2E-14 4.4E-19 129.5 16.0 144 417-575 1-144 (144)
82 PRK11131 ATP-dependent RNA hel 99.6 6.8E-15 1.5E-19 177.1 16.7 147 406-578 79-231 (1294)
83 TIGR00963 secA preprotein tran 99.6 9.3E-15 2E-19 167.7 13.9 131 401-548 56-190 (745)
84 PRK12898 secA preprotein trans 99.6 1.4E-14 2.9E-19 165.3 14.5 130 401-547 103-255 (656)
85 PRK09200 preprotein translocas 99.6 1.9E-14 4.2E-19 167.2 15.6 134 397-547 75-212 (790)
86 PRK09694 helicase Cas3; Provis 99.6 5.3E-14 1.2E-18 165.8 19.5 171 399-579 284-484 (878)
87 COG1111 MPH1 ERCC4-like helica 99.6 3.8E-14 8.2E-19 153.8 15.8 163 399-578 13-175 (542)
88 TIGR03714 secA2 accessory Sec 99.6 1.6E-14 3.4E-19 166.6 12.2 134 398-547 68-208 (762)
89 TIGR00595 priA primosomal prot 99.5 9.3E-14 2E-18 156.3 17.1 133 420-578 1-142 (505)
90 PRK13104 secA preprotein trans 99.5 3.8E-14 8.2E-19 164.8 13.2 130 401-547 82-215 (896)
91 KOG0948 Nuclear exosomal RNA h 99.5 8E-15 1.7E-19 163.6 6.9 156 400-582 128-283 (1041)
92 TIGR01967 DEAH_box_HrpA ATP-de 99.5 3E-13 6.5E-18 163.5 18.0 148 408-578 74-224 (1283)
93 PF04851 ResIII: Type III rest 99.5 2.7E-13 5.8E-18 129.9 11.2 157 401-576 3-183 (184)
94 KOG2340 Uncharacterized conser 99.4 4.6E-13 1E-17 145.2 7.5 179 400-578 215-482 (698)
95 PRK12904 preprotein translocas 99.4 4E-12 8.6E-17 147.9 13.2 130 401-547 81-214 (830)
96 KOG0926 DEAH-box RNA helicase 99.3 5.1E-11 1.1E-15 134.4 19.0 152 407-576 262-425 (1172)
97 COG1061 SSL2 DNA or RNA helica 99.3 8.7E-12 1.9E-16 138.4 12.2 146 399-577 34-185 (442)
98 KOG0949 Predicted helicase, DE 99.3 7.5E-12 1.6E-16 143.4 11.3 165 401-579 511-675 (1330)
99 COG4098 comFA Superfamily II D 99.3 1E-10 2.2E-15 122.0 18.5 148 401-580 97-248 (441)
100 TIGR01407 dinG_rel DnaQ family 99.3 3.2E-11 6.9E-16 143.9 15.1 98 386-495 231-334 (850)
101 KOG0950 DNA polymerase theta/e 99.3 1.6E-11 3.5E-16 141.3 11.5 176 386-578 208-390 (1008)
102 COG1200 RecG RecG-like helicas 99.3 2.4E-10 5.1E-15 129.0 20.5 168 385-578 246-424 (677)
103 PRK13107 preprotein translocas 99.3 1.4E-11 3E-16 143.4 11.0 130 401-547 82-215 (908)
104 PRK11448 hsdR type I restricti 99.2 1.3E-10 2.9E-15 140.8 15.8 162 401-577 413-596 (1123)
105 TIGR00603 rad25 DNA repair hel 99.2 1E-10 2.2E-15 135.2 11.9 153 400-578 254-414 (732)
106 TIGR03117 cas_csf4 CRISPR-asso 99.2 2.7E-10 5.9E-15 130.4 14.7 77 408-493 8-86 (636)
107 COG1643 HrpA HrpA-like helicas 99.2 8.1E-10 1.8E-14 129.4 18.9 152 406-578 55-208 (845)
108 COG1110 Reverse gyrase [DNA re 99.1 1.3E-09 2.8E-14 126.5 18.5 135 398-549 80-218 (1187)
109 PRK07246 bifunctional ATP-depe 99.1 3.1E-10 6.8E-15 134.5 13.0 85 397-495 242-331 (820)
110 PF06862 DUF1253: Protein of u 99.1 5.9E-10 1.3E-14 122.4 13.6 187 447-633 29-313 (442)
111 COG1198 PriA Primosomal protei 99.1 1.6E-09 3.5E-14 125.3 16.6 153 400-578 197-362 (730)
112 KOG0920 ATP-dependent RNA heli 99.1 1.5E-09 3.3E-14 127.1 15.0 157 402-579 174-333 (924)
113 COG1203 CRISPR-associated heli 99.0 6.7E-10 1.4E-14 130.5 11.1 170 402-579 196-384 (733)
114 TIGR00348 hsdR type I site-spe 99.0 1.9E-09 4.1E-14 125.5 14.7 153 402-576 239-403 (667)
115 COG1197 Mfd Transcription-repa 99.0 8.5E-09 1.8E-13 122.3 18.2 169 384-578 577-755 (1139)
116 KOG0922 DEAH-box RNA helicase 99.0 1.3E-08 2.8E-13 114.4 18.2 149 406-579 56-209 (674)
117 KOG0951 RNA helicase BRR2, DEA 99.0 2.1E-09 4.4E-14 126.3 11.2 156 399-579 1141-1303(1674)
118 smart00488 DEXDc2 DEAD-like he 98.9 1E-08 2.2E-13 107.9 12.8 73 401-478 8-84 (289)
119 smart00489 DEXDc3 DEAD-like he 98.9 1E-08 2.2E-13 107.9 12.8 73 401-478 8-84 (289)
120 PRK08074 bifunctional ATP-depe 98.9 1.1E-08 2.3E-13 123.3 13.9 82 401-494 257-346 (928)
121 PRK13103 secA preprotein trans 98.8 1.4E-08 3.1E-13 118.8 11.7 131 400-547 81-215 (913)
122 PF07652 Flavi_DEAD: Flaviviru 98.8 2.7E-08 5.8E-13 93.7 9.3 135 416-579 4-140 (148)
123 PRK12906 secA preprotein trans 98.7 5.7E-08 1.2E-12 113.3 12.3 131 400-547 79-213 (796)
124 PRK12326 preprotein translocas 98.7 7.8E-08 1.7E-12 110.4 12.7 130 401-547 78-211 (764)
125 KOG0923 mRNA splicing factor A 98.7 1.6E-07 3.5E-12 105.1 14.4 156 402-578 266-423 (902)
126 KOG0924 mRNA splicing factor A 98.7 2.1E-07 4.6E-12 104.3 13.4 155 399-578 354-513 (1042)
127 PRK11747 dinG ATP-dependent DN 98.7 2.4E-07 5.2E-12 108.5 14.6 66 398-474 23-97 (697)
128 COG4096 HsdR Type I site-speci 98.7 1.1E-07 2.3E-12 109.4 11.0 152 401-578 165-323 (875)
129 PF00176 SNF2_N: SNF2 family N 98.6 1.1E-07 2.3E-12 98.6 10.1 151 415-577 24-174 (299)
130 PF07517 SecA_DEAD: SecA DEAD- 98.6 4.8E-07 1E-11 94.0 13.5 132 399-547 75-210 (266)
131 PRK12902 secA preprotein trans 98.6 4.3E-07 9.3E-12 106.2 12.4 129 401-547 85-218 (939)
132 CHL00122 secA preprotein trans 98.5 3.7E-07 8E-12 106.7 11.5 133 397-547 73-209 (870)
133 PLN03142 Probable chromatin-re 98.5 1.3E-06 2.8E-11 105.2 15.9 156 401-576 169-330 (1033)
134 PRK14873 primosome assembly pr 98.5 2E-06 4.3E-11 100.0 16.2 131 424-579 168-307 (665)
135 COG1199 DinG Rad3-related DNA 98.5 3.7E-07 8.1E-12 106.2 9.4 73 396-478 10-86 (654)
136 PRK04914 ATP-dependent helicas 98.4 2.9E-06 6.4E-11 101.7 14.5 159 401-576 152-316 (956)
137 PRK15483 type III restriction- 98.4 2.7E-06 5.8E-11 101.1 13.9 148 417-577 60-240 (986)
138 KOG0925 mRNA splicing factor A 98.4 3.7E-06 8E-11 91.7 13.2 177 378-578 24-204 (699)
139 TIGR00604 rad3 DNA repair heli 98.3 3.3E-06 7.1E-11 99.4 11.3 75 397-479 6-84 (705)
140 TIGR02562 cas3_yersinia CRISPR 98.2 5.2E-06 1.1E-10 98.7 10.7 168 401-579 408-638 (1110)
141 PF13086 AAA_11: AAA domain; P 98.1 2.2E-05 4.8E-10 77.8 10.2 74 401-477 1-75 (236)
142 KOG4150 Predicted ATP-dependen 98.0 7.3E-06 1.6E-10 90.6 5.8 230 392-631 277-536 (1034)
143 COG4889 Predicted helicase [Ge 98.0 1.8E-05 4E-10 91.2 8.9 139 391-548 151-318 (1518)
144 PRK12903 secA preprotein trans 98.0 5.9E-05 1.3E-09 88.5 12.4 132 398-547 76-211 (925)
145 COG0610 Type I site-specific r 97.9 7.2E-05 1.6E-09 90.6 13.3 141 417-576 274-414 (962)
146 KOG1123 RNA polymerase II tran 97.9 1.6E-05 3.5E-10 87.1 6.2 153 400-578 301-461 (776)
147 KOG0952 DNA/RNA helicase MER3/ 97.9 2.4E-06 5.3E-11 100.0 -0.1 164 399-578 925-1096(1230)
148 PF13604 AAA_30: AAA domain; P 97.9 4E-05 8.6E-10 76.2 8.2 123 401-574 1-130 (196)
149 KOG0385 Chromatin remodeling c 97.9 0.00017 3.6E-09 82.7 13.8 155 401-575 167-327 (971)
150 KOG0387 Transcription-coupled 97.8 0.00038 8.3E-09 80.2 16.2 165 384-576 196-376 (923)
151 PF02562 PhoH: PhoH-like prote 97.8 6.7E-05 1.5E-09 75.2 9.0 140 399-574 2-155 (205)
152 PRK10536 hypothetical protein; 97.7 0.00066 1.4E-08 70.3 13.3 148 397-573 55-211 (262)
153 PRK12900 secA preprotein trans 97.6 0.00013 2.8E-09 86.7 9.0 130 401-547 138-271 (1025)
154 KOG0390 DNA repair protein, SN 97.5 0.0013 2.7E-08 77.1 14.7 164 401-578 238-417 (776)
155 PF09848 DUF2075: Uncharacteri 97.5 0.00037 8.1E-09 75.4 8.8 108 418-561 3-117 (352)
156 PRK12901 secA preprotein trans 97.5 0.00032 6.9E-09 83.6 8.7 131 401-547 169-303 (1112)
157 KOG1803 DNA helicase [Replicat 97.4 0.00055 1.2E-08 77.1 9.9 65 400-475 184-249 (649)
158 KOG1802 RNA helicase nonsense 97.4 0.00071 1.5E-08 76.7 10.4 84 393-491 402-485 (935)
159 KOG0389 SNF2 family DNA-depend 97.4 0.00099 2.1E-08 76.9 11.7 157 402-576 400-563 (941)
160 PF02399 Herpes_ori_bp: Origin 97.4 0.00048 1E-08 80.4 9.0 137 418-579 51-194 (824)
161 KOG0391 SNF2 family DNA-depend 97.4 0.0014 3E-08 78.1 12.6 154 402-575 616-775 (1958)
162 TIGR01448 recD_rel helicase, p 97.4 0.0015 3.3E-08 77.2 13.1 129 400-572 322-450 (720)
163 PF12340 DUF3638: Protein of u 97.4 0.0012 2.7E-08 67.1 10.5 154 381-548 5-186 (229)
164 TIGR01447 recD exodeoxyribonuc 97.3 0.0016 3.6E-08 75.1 12.0 143 404-572 148-293 (586)
165 KOG1002 Nucleotide excision re 97.3 0.0031 6.8E-08 69.5 13.3 131 401-549 184-331 (791)
166 PF13872 AAA_34: P-loop contai 97.3 0.0024 5.2E-08 67.4 12.0 175 383-581 25-226 (303)
167 PRK10875 recD exonuclease V su 97.3 0.0013 2.8E-08 76.2 10.6 143 403-572 154-299 (615)
168 KOG4439 RNA polymerase II tran 97.2 0.00087 1.9E-08 76.4 7.6 142 401-549 325-478 (901)
169 COG3587 Restriction endonuclea 97.1 0.0024 5.2E-08 74.4 10.6 148 418-579 76-246 (985)
170 PF14617 CMS1: U3-containing 9 97.1 0.00071 1.5E-08 69.9 5.8 86 454-544 125-211 (252)
171 PF13401 AAA_22: AAA domain; P 97.1 0.0024 5.3E-08 58.0 8.5 19 415-433 3-21 (131)
172 KOG1132 Helicase of the DEAD s 97.0 0.0034 7.4E-08 73.4 10.7 79 401-479 21-134 (945)
173 PF05970 PIF1: PIF1-like helic 96.8 0.0033 7E-08 68.5 8.2 60 401-471 1-66 (364)
174 TIGR02768 TraA_Ti Ti-type conj 96.8 0.015 3.3E-07 69.1 14.0 62 400-472 351-413 (744)
175 PF00580 UvrD-helicase: UvrD/R 96.8 0.0034 7.4E-08 65.3 7.7 71 402-481 1-71 (315)
176 PF13245 AAA_19: Part of AAA d 96.8 0.0043 9.3E-08 52.5 6.7 53 416-475 10-62 (76)
177 KOG1805 DNA replication helica 96.7 0.0072 1.6E-07 71.4 10.1 137 385-548 657-810 (1100)
178 PRK13889 conjugal transfer rel 96.7 0.012 2.5E-07 71.6 11.9 60 401-471 346-406 (988)
179 KOG0921 Dosage compensation co 96.6 0.0044 9.5E-08 72.5 7.7 154 407-578 384-538 (1282)
180 cd00009 AAA The AAA+ (ATPases 96.6 0.027 5.9E-07 50.6 11.3 17 416-432 19-35 (151)
181 KOG1000 Chromatin remodeling p 96.5 0.016 3.4E-07 64.3 10.7 158 386-576 191-349 (689)
182 PRK06921 hypothetical protein; 96.4 0.037 8E-07 57.8 12.5 27 415-442 116-142 (266)
183 KOG0953 Mitochondrial RNA heli 96.4 0.0056 1.2E-07 68.5 6.4 99 417-549 192-290 (700)
184 COG1875 NYN ribonuclease and A 96.3 0.026 5.7E-07 60.8 10.7 150 397-572 224-385 (436)
185 PRK08181 transposase; Validate 96.3 0.039 8.6E-07 57.8 11.9 47 532-578 165-212 (269)
186 PRK13826 Dtr system oriT relax 96.2 0.051 1.1E-06 66.7 13.9 138 385-574 366-505 (1102)
187 PF03354 Terminase_1: Phage Te 96.1 0.029 6.2E-07 63.4 10.5 150 404-571 1-159 (477)
188 KOG0392 SNF2 family DNA-depend 96.1 0.028 6E-07 68.0 10.5 159 402-575 976-1138(1549)
189 COG0653 SecA Preprotein transl 96.1 0.018 3.9E-07 68.0 8.9 126 407-547 84-213 (822)
190 COG0556 UvrB Helicase subunit 96.0 0.01 2.2E-07 66.4 6.0 68 401-482 12-84 (663)
191 PRK14722 flhF flagellar biosyn 96.0 0.11 2.3E-06 57.0 13.7 56 379-434 81-155 (374)
192 PRK07952 DNA replication prote 96.0 0.085 1.8E-06 54.5 12.2 48 532-579 160-209 (244)
193 smart00382 AAA ATPases associa 95.9 0.026 5.6E-07 50.1 7.3 17 416-432 2-18 (148)
194 PRK04296 thymidine kinase; Pro 95.9 0.007 1.5E-07 59.8 3.9 39 533-575 77-115 (190)
195 KOG0384 Chromodomain-helicase 95.9 0.034 7.4E-07 67.3 9.8 153 400-575 369-535 (1373)
196 cd01124 KaiC KaiC is a circadi 95.8 0.052 1.1E-06 52.4 9.5 48 419-478 2-49 (187)
197 PRK06526 transposase; Provisio 95.8 0.043 9.3E-07 57.0 9.2 46 533-578 158-204 (254)
198 cd01120 RecA-like_NTPases RecA 95.7 0.098 2.1E-06 48.5 10.3 46 533-578 84-139 (165)
199 PRK08727 hypothetical protein; 95.7 0.063 1.4E-06 54.8 9.7 45 533-578 92-138 (233)
200 TIGR00376 DNA helicase, putati 95.6 0.033 7.1E-07 65.2 8.5 67 400-477 156-223 (637)
201 PRK12723 flagellar biosynthesi 95.6 0.12 2.6E-06 57.0 12.2 47 532-578 252-300 (388)
202 PRK12377 putative replication 95.6 0.17 3.7E-06 52.4 12.7 43 532-574 161-205 (248)
203 PRK05642 DNA replication initi 95.6 0.077 1.7E-06 54.2 9.9 46 533-578 96-142 (234)
204 PHA02533 17 large terminase pr 95.5 0.15 3.2E-06 58.6 13.1 149 401-575 59-210 (534)
205 PRK14974 cell division protein 95.5 0.11 2.3E-06 56.3 11.3 46 533-578 221-267 (336)
206 TIGR03420 DnaA_homol_Hda DnaA 95.5 0.11 2.3E-06 52.0 10.8 43 535-577 91-134 (226)
207 PRK06893 DNA replication initi 95.5 0.036 7.8E-07 56.4 7.3 46 533-578 90-137 (229)
208 PRK08116 hypothetical protein; 95.4 0.17 3.7E-06 52.9 12.1 47 532-579 176-225 (268)
209 PRK06835 DNA replication prote 95.3 0.22 4.7E-06 53.8 12.7 46 532-578 244-291 (329)
210 COG3421 Uncharacterized protei 95.2 0.021 4.5E-07 64.7 4.8 73 506-578 80-168 (812)
211 PF00448 SRP54: SRP54-type pro 95.2 0.14 3.1E-06 51.0 10.4 46 533-578 82-128 (196)
212 TIGR01075 uvrD DNA helicase II 95.1 0.043 9.3E-07 65.1 7.3 71 400-479 3-73 (715)
213 PRK05703 flhF flagellar biosyn 95.1 0.3 6.5E-06 54.5 13.5 59 513-578 285-345 (424)
214 PRK11889 flhF flagellar biosyn 95.1 0.21 4.6E-06 55.1 11.8 63 512-578 302-365 (436)
215 KOG0386 Chromatin remodeling c 94.9 0.05 1.1E-06 64.7 6.9 131 400-549 393-530 (1157)
216 PRK00149 dnaA chromosomal repl 94.9 0.13 2.9E-06 57.5 10.1 44 533-577 210-255 (450)
217 PF05621 TniB: Bacterial TniB 94.8 0.12 2.7E-06 54.7 8.7 117 417-568 62-181 (302)
218 COG1484 DnaC DNA replication p 94.7 0.18 3.9E-06 52.4 9.8 48 415-474 104-151 (254)
219 PRK08084 DNA replication initi 94.7 0.21 4.6E-06 51.0 10.2 44 535-578 98-143 (235)
220 KOG1015 Transcription regulato 94.7 0.9 2E-05 54.4 16.0 149 418-578 698-863 (1567)
221 PF06745 KaiC: KaiC; InterPro 94.5 0.08 1.7E-06 53.3 6.5 129 415-575 18-160 (226)
222 KOG0388 SNF2 family DNA-depend 94.5 0.2 4.4E-06 57.9 10.1 152 402-576 568-734 (1185)
223 PRK14087 dnaA chromosomal repl 94.5 0.27 5.9E-06 55.3 11.2 47 532-578 204-252 (450)
224 TIGR00362 DnaA chromosomal rep 94.4 0.2 4.3E-06 55.3 9.8 43 534-577 199-243 (405)
225 KOG0989 Replication factor C, 94.4 0.085 1.8E-06 55.9 6.3 46 531-577 126-171 (346)
226 PRK10919 ATP-dependent DNA hel 94.3 0.087 1.9E-06 62.1 7.1 71 401-480 2-72 (672)
227 TIGR02760 TraI_TIGR conjugativ 94.3 0.3 6.6E-06 63.9 12.5 134 401-573 429-565 (1960)
228 KOG1131 RNA polymerase II tran 94.3 0.61 1.3E-05 52.5 12.9 42 398-439 13-58 (755)
229 PRK07003 DNA polymerase III su 94.2 0.73 1.6E-05 54.7 14.0 44 533-578 118-161 (830)
230 PRK14086 dnaA chromosomal repl 94.1 0.23 5E-06 57.6 9.7 47 533-579 376-424 (617)
231 PRK12323 DNA polymerase III su 94.0 0.36 7.8E-06 56.4 11.1 39 533-572 123-161 (700)
232 PRK12402 replication factor C 94.0 0.35 7.5E-06 51.3 10.4 42 533-576 124-165 (337)
233 PTZ00112 origin recognition co 94.0 0.48 1E-05 56.9 12.1 41 533-574 868-909 (1164)
234 PF05127 Helicase_RecD: Helica 94.0 0.018 3.8E-07 56.7 0.4 126 420-578 1-126 (177)
235 PRK07764 DNA polymerase III su 93.9 0.27 5.9E-06 59.2 10.3 45 532-578 118-162 (824)
236 PF00308 Bac_DnaA: Bacterial d 93.9 0.26 5.7E-06 49.9 8.8 49 532-580 95-145 (219)
237 PHA03368 DNA packaging termina 93.9 0.61 1.3E-05 54.4 12.5 139 414-578 252-393 (738)
238 PRK14712 conjugal transfer nic 93.8 0.29 6.2E-06 62.3 10.5 63 401-472 835-901 (1623)
239 KOG0342 ATP-dependent RNA heli 93.8 0.0075 1.6E-07 66.7 -2.8 104 21-124 121-227 (543)
240 PRK09111 DNA polymerase III su 93.7 0.3 6.4E-06 56.8 9.9 40 532-572 130-169 (598)
241 PRK08903 DnaA regulatory inact 93.7 0.32 6.8E-06 49.0 8.9 43 534-577 90-133 (227)
242 TIGR01547 phage_term_2 phage t 93.6 0.32 7E-06 53.4 9.5 135 419-577 4-142 (396)
243 PRK14088 dnaA chromosomal repl 93.6 0.43 9.2E-06 53.5 10.6 45 534-578 194-240 (440)
244 PHA02544 44 clamp loader, smal 93.6 0.55 1.2E-05 49.6 11.0 39 534-572 100-138 (316)
245 PRK11054 helD DNA helicase IV; 93.6 0.26 5.7E-06 58.2 9.2 73 399-480 194-266 (684)
246 PHA03333 putative ATPase subun 93.5 1.5 3.2E-05 51.5 14.6 153 402-578 170-335 (752)
247 PRK14952 DNA polymerase III su 93.4 1.3 2.7E-05 51.6 14.3 45 532-578 116-160 (584)
248 PRK12422 chromosomal replicati 93.4 0.36 7.8E-06 54.2 9.6 47 533-579 201-249 (445)
249 PRK00411 cdc6 cell division co 93.4 0.47 1E-05 51.7 10.3 16 417-432 56-71 (394)
250 TIGR03015 pepcterm_ATPase puta 93.3 0.29 6.2E-06 50.3 8.1 33 401-433 23-60 (269)
251 COG2805 PilT Tfp pilus assembl 93.3 0.52 1.1E-05 50.0 9.8 51 377-446 104-154 (353)
252 TIGR03877 thermo_KaiC_1 KaiC d 93.2 0.63 1.4E-05 47.5 10.3 53 415-479 20-72 (237)
253 PRK05298 excinuclease ABC subu 93.2 0.41 8.9E-06 56.3 10.0 66 401-480 12-82 (652)
254 COG1444 Predicted P-loop ATPas 93.1 0.94 2E-05 53.6 12.6 151 394-578 207-359 (758)
255 COG0553 HepA Superfamily II DN 93.1 0.32 7E-06 58.2 9.3 160 400-575 337-510 (866)
256 TIGR01074 rep ATP-dependent DN 93.1 0.31 6.8E-06 57.2 9.0 70 402-480 2-71 (664)
257 PRK13709 conjugal transfer nic 93.1 0.51 1.1E-05 60.8 11.3 65 400-471 966-1032(1747)
258 PRK09183 transposase/IS protei 93.1 0.48 1E-05 49.3 9.3 21 413-433 99-119 (259)
259 PRK11773 uvrD DNA-dependent he 93.0 0.18 3.9E-06 59.9 6.8 72 400-480 8-79 (721)
260 cd01122 GP4d_helicase GP4d_hel 92.9 0.28 6E-06 50.7 7.4 22 412-433 26-47 (271)
261 PF00004 AAA: ATPase family as 92.9 0.5 1.1E-05 42.4 8.2 14 419-432 1-14 (132)
262 PRK08691 DNA polymerase III su 92.8 0.92 2E-05 53.4 11.9 44 532-577 117-160 (709)
263 COG1474 CDC6 Cdc6-related prot 92.7 0.33 7.1E-06 53.2 7.7 34 409-443 33-68 (366)
264 PRK05973 replicative DNA helic 92.7 0.58 1.2E-05 48.2 9.0 82 384-478 23-114 (237)
265 PRK08533 flagellar accessory p 92.6 0.91 2E-05 46.3 10.3 53 414-478 22-74 (230)
266 TIGR00631 uvrb excinuclease AB 92.5 0.29 6.2E-06 57.6 7.5 66 401-480 9-79 (655)
267 PF13173 AAA_14: AAA domain 92.5 0.81 1.7E-05 41.9 9.0 39 534-575 61-99 (128)
268 PRK07471 DNA polymerase III su 92.5 0.82 1.8E-05 50.0 10.5 42 532-574 139-180 (365)
269 PRK14964 DNA polymerase III su 92.4 2.2 4.7E-05 48.6 14.1 45 532-578 114-158 (491)
270 PRK08769 DNA polymerase III su 92.3 1.2 2.5E-05 48.0 11.1 41 532-573 111-151 (319)
271 PRK06731 flhF flagellar biosyn 92.2 1.5 3.2E-05 46.2 11.6 62 513-578 137-199 (270)
272 PF05876 Terminase_GpA: Phage 92.2 0.38 8.2E-06 55.6 7.8 126 401-547 16-147 (557)
273 TIGR02881 spore_V_K stage V sp 92.2 0.51 1.1E-05 48.8 8.2 17 417-433 43-59 (261)
274 PRK13894 conjugal transfer ATP 92.1 0.36 7.7E-06 51.9 7.0 68 390-468 123-191 (319)
275 PRK11823 DNA repair protein Ra 92.1 0.6 1.3E-05 52.4 9.1 52 415-478 79-130 (446)
276 PRK04195 replication factor C 92.1 1.2 2.5E-05 50.6 11.5 42 379-432 11-55 (482)
277 PRK07994 DNA polymerase III su 92.0 2 4.4E-05 50.4 13.5 44 533-578 118-161 (647)
278 PRK13833 conjugal transfer pro 91.9 0.43 9.2E-06 51.4 7.3 66 392-468 121-187 (323)
279 PRK12726 flagellar biosynthesi 91.9 1.5 3.3E-05 48.3 11.6 18 416-433 206-223 (407)
280 PRK11331 5-methylcytosine-spec 91.9 0.55 1.2E-05 52.7 8.3 32 402-433 180-211 (459)
281 KOG0991 Replication factor C, 91.9 0.26 5.7E-06 50.5 5.2 43 533-576 112-154 (333)
282 PRK14958 DNA polymerase III su 91.8 1.2 2.7E-05 50.9 11.3 39 533-572 118-156 (509)
283 PRK06645 DNA polymerase III su 91.8 2 4.4E-05 49.1 12.9 45 532-578 126-170 (507)
284 TIGR02760 TraI_TIGR conjugativ 91.7 0.74 1.6E-05 60.5 10.4 63 400-471 1018-1084(1960)
285 TIGR01073 pcrA ATP-dependent D 91.6 0.34 7.3E-06 57.7 6.8 72 400-480 3-74 (726)
286 PRK14949 DNA polymerase III su 91.6 1.4 3.1E-05 53.2 11.8 44 533-578 118-161 (944)
287 PRK08939 primosomal protein Dn 91.6 0.87 1.9E-05 48.6 9.2 48 532-579 215-265 (306)
288 PLN03025 replication factor C 91.6 1.4 3.1E-05 46.9 10.9 41 534-576 99-139 (319)
289 KOG0344 ATP-dependent RNA heli 91.4 2.3 5E-05 48.6 12.5 98 425-544 366-466 (593)
290 TIGR02785 addA_Gpos recombinat 91.4 0.45 9.7E-06 60.0 7.8 126 401-545 1-126 (1232)
291 PF13177 DNA_pol3_delta2: DNA 91.3 2.2 4.7E-05 41.1 10.8 43 532-575 100-142 (162)
292 COG4962 CpaF Flp pilus assembl 91.2 0.32 6.9E-06 52.4 5.3 62 398-471 154-216 (355)
293 PRK14951 DNA polymerase III su 91.1 1.1 2.5E-05 52.2 10.2 44 533-578 123-166 (618)
294 PRK14723 flhF flagellar biosyn 91.1 2.4 5.1E-05 50.7 12.9 20 416-435 185-204 (767)
295 PRK10689 transcription-repair 91.1 0.65 1.4E-05 58.0 8.7 78 457-546 811-891 (1147)
296 TIGR02928 orc1/cdc6 family rep 91.1 0.83 1.8E-05 49.2 8.6 24 417-441 41-64 (365)
297 PRK14961 DNA polymerase III su 91.0 1.9 4E-05 47.1 11.3 39 533-572 118-156 (363)
298 PRK14965 DNA polymerase III su 91.0 3.5 7.7E-05 47.9 14.1 45 532-578 117-161 (576)
299 PF02534 T4SS-DNA_transf: Type 91.0 0.3 6.6E-06 54.7 5.3 49 417-478 45-93 (469)
300 PF05729 NACHT: NACHT domain 90.7 1.7 3.8E-05 40.4 9.4 41 537-577 84-132 (166)
301 TIGR03881 KaiC_arch_4 KaiC dom 90.7 1.9 4.1E-05 43.4 10.2 19 415-433 19-37 (229)
302 PRK05707 DNA polymerase III su 90.5 2.2 4.7E-05 46.1 11.1 32 402-433 4-39 (328)
303 cd01121 Sms Sms (bacterial rad 90.5 1.3 2.8E-05 48.7 9.4 52 415-478 81-132 (372)
304 TIGR02782 TrbB_P P-type conjug 90.5 0.87 1.9E-05 48.5 7.9 68 390-468 107-175 (299)
305 COG0593 DnaA ATPase involved i 90.5 1.2 2.5E-05 49.5 9.0 47 534-580 175-223 (408)
306 TIGR00580 mfd transcription-re 90.5 0.76 1.6E-05 56.1 8.3 79 456-546 661-742 (926)
307 PRK06067 flagellar accessory p 90.4 1.6 3.5E-05 44.2 9.5 52 415-478 24-75 (234)
308 PRK12727 flagellar biosynthesi 90.3 5.6 0.00012 45.8 14.4 55 379-433 299-367 (559)
309 COG1419 FlhF Flagellar GTP-bin 90.3 1.1 2.5E-05 49.3 8.7 19 415-433 202-220 (407)
310 cd01126 TraG_VirD4 The TraG/Tr 90.3 0.23 4.9E-06 54.4 3.4 48 418-478 1-48 (384)
311 PRK14963 DNA polymerase III su 90.2 1.4 3E-05 50.4 9.6 17 418-434 38-54 (504)
312 cd00984 DnaB_C DnaB helicase C 90.1 1.6 3.4E-05 44.2 9.2 19 414-432 11-29 (242)
313 PF03237 Terminase_6: Terminas 90.1 2.8 6.1E-05 44.2 11.5 132 420-576 1-138 (384)
314 PRK05563 DNA polymerase III su 90.1 4.7 0.0001 46.7 13.9 45 532-578 117-161 (559)
315 TIGR00596 rad1 DNA repair prot 89.9 0.44 9.6E-06 57.2 5.7 66 509-577 9-74 (814)
316 TIGR02655 circ_KaiC circadian 89.9 1 2.3E-05 51.0 8.4 127 415-574 262-397 (484)
317 COG4626 Phage terminase-like p 89.9 2.4 5.3E-05 48.4 11.1 150 401-573 61-223 (546)
318 TIGR03499 FlhF flagellar biosy 89.9 2.6 5.6E-05 44.4 10.8 18 416-433 194-211 (282)
319 COG0470 HolB ATPase involved i 89.7 0.89 1.9E-05 47.8 7.2 45 532-578 107-151 (325)
320 PRK14956 DNA polymerase III su 89.6 1.6 3.5E-05 49.4 9.4 43 534-578 121-163 (484)
321 PRK04328 hypothetical protein; 89.5 2.2 4.8E-05 44.0 9.8 53 415-479 22-74 (249)
322 PRK12724 flagellar biosynthesi 89.4 3.4 7.3E-05 46.2 11.6 45 534-578 299-347 (432)
323 PF01637 Arch_ATPase: Archaeal 89.4 0.8 1.7E-05 45.1 6.2 40 536-575 120-165 (234)
324 PRK04537 ATP-dependent RNA hel 89.4 2 4.4E-05 49.8 10.4 74 456-543 258-334 (572)
325 PRK06995 flhF flagellar biosyn 89.2 2.2 4.8E-05 48.5 10.2 20 416-435 256-275 (484)
326 TIGR03600 phage_DnaB phage rep 89.2 2.4 5.2E-05 47.1 10.5 26 414-440 192-217 (421)
327 PF03796 DnaB_C: DnaB-like hel 89.1 1.2 2.6E-05 45.9 7.5 141 416-575 19-180 (259)
328 PRK14957 DNA polymerase III su 89.1 2.9 6.2E-05 48.3 11.1 40 532-572 117-156 (546)
329 PRK14959 DNA polymerase III su 89.0 2.6 5.7E-05 49.2 10.8 44 533-578 118-161 (624)
330 TIGR03689 pup_AAA proteasome A 89.0 1.1 2.4E-05 51.2 7.6 17 416-432 216-232 (512)
331 TIGR03880 KaiC_arch_3 KaiC dom 88.8 1.3 2.9E-05 44.4 7.5 131 415-575 15-153 (224)
332 TIGR03878 thermo_KaiC_2 KaiC d 88.8 2.4 5.2E-05 44.0 9.5 18 415-432 35-52 (259)
333 PRK00771 signal recognition pa 88.7 3.4 7.4E-05 46.4 11.1 17 417-433 96-112 (437)
334 CHL00181 cbbX CbbX; Provisiona 88.4 2 4.4E-05 45.4 8.8 19 416-434 59-77 (287)
335 PRK09112 DNA polymerase III su 88.4 2.9 6.2E-05 45.6 10.1 43 533-577 140-182 (351)
336 PF03969 AFG1_ATPase: AFG1-lik 88.2 6 0.00013 43.4 12.4 46 533-579 126-172 (362)
337 PRK13897 type IV secretion sys 88.2 0.55 1.2E-05 54.7 4.7 49 417-478 159-207 (606)
338 TIGR01243 CDC48 AAA family ATP 88.2 2.2 4.7E-05 51.0 9.8 52 378-432 174-228 (733)
339 PRK14969 DNA polymerase III su 88.1 2.1 4.6E-05 49.2 9.3 40 532-572 117-156 (527)
340 PRK05986 cob(I)alamin adenolsy 88.1 6.7 0.00014 39.2 11.6 50 533-582 114-165 (191)
341 KOG0331 ATP-dependent RNA heli 88.1 1.6 3.4E-05 49.7 8.0 86 456-563 342-430 (519)
342 PRK14960 DNA polymerase III su 88.0 3.8 8.3E-05 48.2 11.2 44 533-578 117-160 (702)
343 PRK06904 replicative DNA helic 87.7 4.6 9.9E-05 45.8 11.6 142 414-573 219-382 (472)
344 PRK00440 rfc replication facto 87.7 4.3 9.4E-05 42.5 10.8 38 534-572 102-139 (319)
345 TIGR02868 CydC thiol reductant 87.7 0.54 1.2E-05 53.5 4.2 40 532-571 486-525 (529)
346 PRK13342 recombination factor 87.6 2.2 4.8E-05 47.3 8.8 38 534-576 92-129 (413)
347 PRK14954 DNA polymerase III su 87.6 3.2 6.9E-05 48.6 10.4 41 531-572 124-164 (620)
348 PRK13341 recombination factor 87.5 1.9 4E-05 51.5 8.6 40 534-578 109-148 (725)
349 cd00561 CobA_CobO_BtuR ATP:cor 87.5 4 8.7E-05 39.5 9.4 53 532-584 93-147 (159)
350 PRK14962 DNA polymerase III su 87.4 2.2 4.7E-05 48.4 8.7 17 418-434 38-54 (472)
351 PRK08506 replicative DNA helic 87.4 2.7 5.9E-05 47.6 9.5 139 415-574 191-351 (472)
352 COG2909 MalT ATP-dependent tra 87.3 1.3 2.9E-05 52.6 7.0 45 534-578 129-173 (894)
353 PRK14948 DNA polymerase III su 87.2 6.7 0.00014 46.1 12.8 41 532-574 119-159 (620)
354 PHA03372 DNA packaging termina 87.2 6.7 0.00014 45.6 12.3 137 414-578 200-340 (668)
355 PRK14721 flhF flagellar biosyn 87.2 3.5 7.5E-05 46.1 10.0 20 415-434 190-209 (420)
356 KOG1133 Helicase of the DEAD s 87.2 0.7 1.5E-05 53.6 4.6 43 401-443 15-61 (821)
357 PRK08699 DNA polymerase III su 87.1 7 0.00015 42.2 12.0 44 532-577 111-154 (325)
358 PRK09087 hypothetical protein; 87.1 1.8 3.9E-05 44.1 7.2 40 537-578 90-130 (226)
359 PRK06871 DNA polymerase III su 87.0 3.9 8.5E-05 44.1 10.0 40 532-572 105-144 (325)
360 TIGR00665 DnaB replicative DNA 87.0 3 6.5E-05 46.4 9.6 139 414-573 193-353 (434)
361 PRK14950 DNA polymerase III su 87.0 1.6 3.5E-05 50.7 7.7 41 532-574 118-158 (585)
362 PRK14955 DNA polymerase III su 86.9 4.6 0.0001 44.6 10.8 42 531-574 124-165 (397)
363 TIGR02237 recomb_radB DNA repa 86.9 1.6 3.4E-05 43.3 6.5 20 415-434 11-30 (209)
364 TIGR00064 ftsY signal recognit 86.9 5.7 0.00012 41.7 11.0 19 416-434 72-90 (272)
365 COG0513 SrmB Superfamily II DN 86.9 3.1 6.8E-05 47.6 9.7 69 457-539 275-346 (513)
366 PRK11192 ATP-dependent RNA hel 86.9 2.9 6.2E-05 46.4 9.3 70 457-540 247-319 (434)
367 PRK07940 DNA polymerase III su 86.8 3 6.5E-05 46.2 9.2 45 532-578 115-159 (394)
368 PF00437 T2SE: Type II/IV secr 86.8 1.4 3E-05 45.6 6.3 45 413-468 124-168 (270)
369 PRK13851 type IV secretion sys 86.7 0.76 1.6E-05 49.9 4.4 45 412-468 158-202 (344)
370 PRK06964 DNA polymerase III su 86.6 5.4 0.00012 43.4 10.9 40 532-572 130-169 (342)
371 PRK04837 ATP-dependent RNA hel 86.6 1.7 3.7E-05 48.1 7.3 72 457-542 257-331 (423)
372 PRK07004 replicative DNA helic 86.5 2.9 6.2E-05 47.3 9.1 40 534-573 324-372 (460)
373 PRK03992 proteasome-activating 86.4 2.5 5.4E-05 46.6 8.4 16 417-432 166-181 (389)
374 COG2256 MGS1 ATPase related to 86.4 3.3 7.2E-05 45.7 9.0 17 418-434 50-66 (436)
375 PF01695 IstB_IS21: IstB-like 86.3 1.3 2.7E-05 43.5 5.3 47 413-471 44-90 (178)
376 TIGR02880 cbbX_cfxQ probable R 86.3 2.7 5.9E-05 44.3 8.2 18 416-433 58-75 (284)
377 PRK11034 clpA ATP-dependent Cl 85.9 4.2 9.1E-05 48.8 10.4 43 536-578 280-326 (758)
378 PRK07993 DNA polymerase III su 85.9 3.1 6.8E-05 45.0 8.6 41 532-573 106-146 (334)
379 PRK07133 DNA polymerase III su 85.8 1.6 3.4E-05 51.9 6.7 45 532-578 116-160 (725)
380 PRK05896 DNA polymerase III su 85.8 5.8 0.00012 46.3 11.1 44 533-578 118-161 (605)
381 PRK05748 replicative DNA helic 85.8 3.9 8.5E-05 45.9 9.7 142 414-575 201-365 (448)
382 PRK08760 replicative DNA helic 85.8 3.3 7.1E-05 47.0 9.1 139 414-573 227-387 (476)
383 PRK10590 ATP-dependent RNA hel 85.7 2.7 5.8E-05 47.2 8.3 70 457-540 247-319 (456)
384 PRK13900 type IV secretion sys 85.5 1.9 4.1E-05 46.7 6.7 20 412-431 156-175 (332)
385 PTZ00110 helicase; Provisional 85.3 2.9 6.2E-05 48.2 8.5 72 456-541 378-452 (545)
386 PRK13850 type IV secretion sys 85.3 0.92 2E-05 53.5 4.5 48 417-477 140-187 (670)
387 PRK09165 replicative DNA helic 85.2 3.9 8.4E-05 46.7 9.3 26 415-441 216-241 (497)
388 PRK09361 radB DNA repair and r 85.2 3.1 6.8E-05 41.7 7.8 20 415-434 22-41 (225)
389 PRK11776 ATP-dependent RNA hel 85.1 3.9 8.5E-05 45.8 9.3 73 457-543 244-319 (460)
390 TIGR02858 spore_III_AA stage I 85.0 7.6 0.00017 40.8 10.7 16 417-432 112-127 (270)
391 KOG1513 Nuclear helicase MOP-3 84.9 0.73 1.6E-05 54.1 3.3 160 400-578 263-457 (1300)
392 COG3973 Superfamily I DNA and 84.9 3.8 8.2E-05 47.3 8.8 60 416-480 226-285 (747)
393 PF05496 RuvB_N: Holliday junc 84.9 1.2 2.5E-05 45.7 4.4 15 418-432 52-66 (233)
394 TIGR00678 holB DNA polymerase 84.7 11 0.00024 36.6 11.2 41 532-574 94-134 (188)
395 PRK04841 transcriptional regul 84.5 7.6 0.00016 47.0 12.0 43 535-577 122-164 (903)
396 PRK10416 signal recognition pa 84.5 7.9 0.00017 41.6 10.8 18 416-433 114-131 (318)
397 PRK08840 replicative DNA helic 84.5 6.7 0.00015 44.4 10.7 40 534-573 329-377 (464)
398 TIGR01243 CDC48 AAA family ATP 84.4 3.7 7.9E-05 49.1 9.1 52 378-432 449-503 (733)
399 cd01394 radB RadB. The archaea 84.3 4.9 0.00011 40.1 8.6 18 416-433 19-36 (218)
400 COG2804 PulE Type II secretory 84.3 1.3 2.8E-05 50.1 4.8 41 403-444 243-285 (500)
401 TIGR01425 SRP54_euk signal rec 84.3 8.6 0.00019 43.1 11.2 16 418-433 102-117 (429)
402 PRK10436 hypothetical protein; 84.0 1.3 2.9E-05 50.0 4.9 25 416-441 218-242 (462)
403 PRK14970 DNA polymerase III su 84.0 10 0.00023 41.0 11.8 17 417-433 40-56 (367)
404 cd00267 ABC_ATPase ABC (ATP-bi 84.0 1.4 3.1E-05 41.5 4.5 47 533-579 97-143 (157)
405 TIGR00631 uvrb excinuclease AB 83.8 8.8 0.00019 45.4 11.7 109 456-578 443-556 (655)
406 cd03228 ABCC_MRP_Like The MRP 83.8 3.1 6.8E-05 40.0 6.8 48 532-580 112-159 (171)
407 PRK09302 circadian clock prote 83.7 4.2 9.1E-05 46.3 8.9 52 415-478 272-323 (509)
408 TIGR00614 recQ_fam ATP-depende 83.7 6.7 0.00015 44.2 10.4 73 457-543 228-303 (470)
409 cd03247 ABCC_cytochrome_bd The 83.6 4.7 0.0001 39.0 8.0 48 532-580 114-161 (178)
410 PTZ00454 26S protease regulato 83.5 6.6 0.00014 43.6 10.0 51 379-432 142-195 (398)
411 TIGR00635 ruvB Holliday juncti 83.5 2 4.3E-05 45.2 5.7 16 417-432 31-46 (305)
412 KOG0741 AAA+-type ATPase [Post 83.5 2.5 5.4E-05 48.1 6.6 55 375-432 212-272 (744)
413 TIGR00708 cobA cob(I)alamin ad 83.4 3.9 8.4E-05 40.2 7.2 51 533-583 96-148 (173)
414 PRK01297 ATP-dependent RNA hel 83.4 3.5 7.6E-05 46.5 8.0 71 457-541 337-410 (475)
415 TIGR01241 FtsH_fam ATP-depende 83.3 4.4 9.6E-05 46.0 8.8 53 377-432 50-104 (495)
416 TIGR00416 sms DNA repair prote 83.1 5.2 0.00011 45.1 9.1 52 415-478 93-144 (454)
417 KOG0741 AAA+-type ATPase [Post 83.0 5.9 0.00013 45.2 9.2 50 383-432 493-554 (744)
418 PRK13822 conjugal transfer cou 82.9 1.7 3.7E-05 51.1 5.3 46 417-475 225-270 (641)
419 PRK08451 DNA polymerase III su 82.9 7.6 0.00016 44.8 10.4 40 532-572 115-154 (535)
420 PF12846 AAA_10: AAA-like doma 82.9 1.6 3.5E-05 44.8 4.7 26 417-443 2-27 (304)
421 KOG0058 Peptide exporter, ABC 82.7 1.2 2.6E-05 52.2 3.9 41 532-573 620-660 (716)
422 TIGR02655 circ_KaiC circadian 82.7 5.8 0.00013 45.1 9.4 54 415-479 20-73 (484)
423 KOG0739 AAA+-type ATPase [Post 82.6 47 0.001 35.8 15.0 47 379-431 130-181 (439)
424 PRK08006 replicative DNA helic 82.6 10 0.00022 43.1 11.1 140 415-573 223-384 (471)
425 PRK05636 replicative DNA helic 82.5 3.7 7.9E-05 47.0 7.7 41 533-573 374-423 (505)
426 cd03246 ABCC_Protease_Secretio 82.5 3.5 7.7E-05 39.7 6.6 48 532-579 112-159 (173)
427 PRK13880 conjugal transfer cou 82.5 1.7 3.6E-05 51.1 5.1 44 417-473 176-219 (636)
428 KOG0060 Long-chain acyl-CoA tr 82.4 1.1 2.4E-05 51.3 3.4 47 513-563 571-617 (659)
429 COG1132 MdlB ABC-type multidru 82.4 0.6 1.3E-05 53.7 1.4 44 532-575 481-524 (567)
430 cd03221 ABCF_EF-3 ABCF_EF-3 E 82.3 3.4 7.3E-05 38.8 6.2 44 532-578 86-129 (144)
431 cd01130 VirB11-like_ATPase Typ 82.2 2.4 5.2E-05 41.5 5.4 32 401-432 9-41 (186)
432 TIGR02538 type_IV_pilB type IV 82.1 1.7 3.7E-05 50.3 4.9 44 394-441 295-340 (564)
433 TIGR02397 dnaX_nterm DNA polym 82.1 8.6 0.00019 41.1 10.0 16 418-433 38-53 (355)
434 KOG2543 Origin recognition com 81.9 10 0.00023 41.7 10.3 48 534-581 115-164 (438)
435 COG1219 ClpX ATP-dependent pro 81.6 1.1 2.3E-05 48.1 2.7 27 415-443 96-122 (408)
436 TIGR00959 ffh signal recogniti 81.6 7.1 0.00015 43.8 9.4 16 418-433 101-116 (428)
437 TIGR00763 lon ATP-dependent pr 81.5 6.4 0.00014 47.4 9.6 17 416-432 347-363 (775)
438 PRK11634 ATP-dependent RNA hel 81.5 3.9 8.5E-05 48.0 7.6 70 457-540 247-319 (629)
439 PRK11160 cysteine/glutathione 81.4 1.5 3.1E-05 50.8 4.0 47 532-579 491-537 (574)
440 cd03239 ABC_SMC_head The struc 81.4 2.3 5E-05 41.6 4.8 42 533-574 115-157 (178)
441 PRK10867 signal recognition pa 81.1 15 0.00033 41.2 11.7 16 418-433 102-117 (433)
442 KOG0733 Nuclear AAA ATPase (VC 81.0 4.4 9.5E-05 46.9 7.4 55 375-432 504-561 (802)
443 COG1197 Mfd Transcription-repa 81.0 13 0.00029 46.1 11.8 144 405-564 731-899 (1139)
444 TIGR02012 tigrfam_recA protein 80.9 8.6 0.00019 41.5 9.4 43 415-468 54-96 (321)
445 KOG0333 U5 snRNP-like RNA heli 80.8 6.1 0.00013 44.9 8.3 86 456-563 518-606 (673)
446 TIGR00767 rho transcription te 80.8 2.3 5E-05 47.2 5.0 20 413-432 165-184 (415)
447 KOG1001 Helicase-like transcri 80.7 2.9 6.4E-05 49.3 6.2 115 419-550 155-270 (674)
448 TIGR03819 heli_sec_ATPase heli 80.7 3 6.6E-05 45.2 5.9 40 391-432 154-194 (340)
449 TIGR02525 plasmid_TraJ plasmid 80.6 2.2 4.7E-05 46.9 4.8 27 416-443 149-175 (372)
450 TIGR02767 TraG-Ti Ti-type conj 80.4 2.4 5.2E-05 49.7 5.3 46 417-475 212-257 (623)
451 PLN00206 DEAD-box ATP-dependen 80.4 5 0.00011 45.9 7.9 73 456-541 368-443 (518)
452 TIGR02524 dot_icm_DotB Dot/Icm 80.4 2 4.4E-05 46.9 4.5 18 415-432 133-150 (358)
453 PRK06090 DNA polymerase III su 80.3 2.5 5.4E-05 45.5 5.0 41 532-573 106-146 (319)
454 PHA00729 NTP-binding motif con 80.2 12 0.00027 38.3 9.8 68 509-579 60-132 (226)
455 PTZ00424 helicase 45; Provisio 80.2 4.7 0.0001 43.9 7.4 72 457-542 269-343 (401)
456 PRK10917 ATP-dependent DNA hel 80.1 5.6 0.00012 47.2 8.4 78 457-546 473-561 (681)
457 cd03229 ABC_Class3 This class 80.0 2.4 5.1E-05 41.1 4.4 49 532-580 116-165 (178)
458 TIGR00643 recG ATP-dependent D 79.9 5.2 0.00011 46.9 8.0 78 457-546 450-538 (630)
459 PRK13764 ATPase; Provisional 79.8 3.3 7.1E-05 48.3 6.1 27 415-442 256-282 (602)
460 PRK09354 recA recombinase A; P 79.7 8.7 0.00019 41.9 9.0 44 415-469 59-102 (349)
461 PRK07399 DNA polymerase III su 79.5 7 0.00015 41.9 8.2 40 532-573 122-161 (314)
462 COG1435 Tdk Thymidine kinase [ 79.4 4.4 9.5E-05 40.6 6.0 49 509-562 61-109 (201)
463 PF10412 TrwB_AAD_bind: Type I 79.3 2.2 4.8E-05 47.0 4.4 47 413-470 12-58 (386)
464 KOG0298 DEAD box-containing he 79.3 4.1 8.9E-05 50.4 6.8 151 416-574 374-549 (1394)
465 PRK14953 DNA polymerase III su 79.1 9.3 0.0002 43.5 9.4 41 532-574 117-157 (486)
466 cd03216 ABC_Carb_Monos_I This 78.8 2.7 5.9E-05 40.2 4.4 48 532-579 98-145 (163)
467 cd01127 TrwB Bacterial conjuga 78.8 1.7 3.7E-05 48.2 3.3 30 413-443 39-68 (410)
468 PRK06305 DNA polymerase III su 78.7 14 0.00031 41.6 10.6 38 533-571 120-157 (451)
469 cd01129 PulE-GspE PulE/GspE Th 78.6 2.7 5.8E-05 43.9 4.6 37 404-441 66-104 (264)
470 COG0210 UvrD Superfamily I DNA 78.6 4.9 0.00011 47.2 7.3 71 401-480 2-72 (655)
471 TIGR01587 cas3_core CRISPR-ass 78.6 9 0.00019 41.1 8.8 72 457-541 224-302 (358)
472 COG4098 comFA Superfamily II D 78.5 14 0.00031 40.1 9.8 107 458-579 308-420 (441)
473 TIGR01970 DEAH_box_HrpB ATP-de 78.5 14 0.00029 45.0 11.0 73 457-540 211-286 (819)
474 PF14516 AAA_35: AAA-like doma 78.2 2.4 5.2E-05 45.7 4.2 40 403-443 17-57 (331)
475 TIGR03346 chaperone_ClpB ATP-d 78.2 11 0.00024 46.0 10.2 45 535-579 267-314 (852)
476 PRK10865 protein disaggregatio 78.2 11 0.00024 45.9 10.3 17 417-433 200-216 (857)
477 PRK07773 replicative DNA helic 78.1 8.2 0.00018 47.2 9.2 140 415-575 216-377 (886)
478 TIGR02203 MsbA_lipidA lipid A 77.9 6.6 0.00014 45.1 8.0 43 532-574 485-527 (571)
479 PRK13767 ATP-dependent helicas 77.9 12 0.00025 45.9 10.3 77 457-542 286-366 (876)
480 CHL00176 ftsH cell division pr 77.9 12 0.00026 44.2 10.0 44 535-578 276-332 (638)
481 TIGR02639 ClpA ATP-dependent C 77.8 13 0.00028 44.5 10.6 17 417-433 204-220 (731)
482 cd03276 ABC_SMC6_euk Eukaryoti 77.7 16 0.00035 36.2 9.7 47 533-579 130-179 (198)
483 COG0556 UvrB Helicase subunit 77.7 10 0.00022 43.4 8.8 107 456-579 447-561 (663)
484 COG1074 RecB ATP-dependent exo 77.6 4.1 8.9E-05 51.2 6.5 61 415-481 15-75 (1139)
485 PRK13876 conjugal transfer cou 77.4 2.1 4.5E-05 50.5 3.7 45 417-474 145-189 (663)
486 PRK05595 replicative DNA helic 77.1 8.9 0.00019 43.0 8.5 42 533-574 310-360 (444)
487 PF03266 NTPase_1: NTPase; In 77.1 1.5 3.3E-05 42.7 2.0 28 533-560 94-123 (168)
488 PF06733 DEAD_2: DEAD_2; Inte 77.1 1.3 2.8E-05 42.9 1.6 42 507-549 119-160 (174)
489 PHA03311 helicase-primase subu 77.1 5.1 0.00011 47.3 6.6 44 417-476 72-115 (828)
490 TIGR03743 SXT_TraD conjugative 77.0 3.8 8.1E-05 48.2 5.6 53 416-479 176-230 (634)
491 PRK11057 ATP-dependent DNA hel 77.0 6.6 0.00014 45.9 7.6 70 457-540 238-310 (607)
492 TIGR00602 rad24 checkpoint pro 76.8 19 0.00042 42.4 11.3 44 379-433 81-127 (637)
493 COG1200 RecG RecG-like helicas 76.6 40 0.00086 39.8 13.5 94 455-564 473-577 (677)
494 TIGR02788 VirB11 P-type DNA tr 76.6 3.1 6.7E-05 44.3 4.4 20 413-432 141-160 (308)
495 PRK14971 DNA polymerase III su 76.6 17 0.00036 42.7 10.8 45 531-577 118-162 (614)
496 cd03278 ABC_SMC_barmotin Barmo 76.6 11 0.00023 37.5 8.0 42 533-574 134-175 (197)
497 cd03230 ABC_DR_subfamily_A Thi 76.2 4 8.7E-05 39.3 4.8 48 532-579 111-158 (173)
498 PF13555 AAA_29: P-loop contai 76.2 3 6.4E-05 34.1 3.2 26 416-443 23-48 (62)
499 cd01125 repA Hexameric Replica 76.0 36 0.00077 34.6 11.9 61 418-480 3-65 (239)
500 cd03115 SRP The signal recogni 75.9 23 0.00049 33.9 9.9 15 419-433 3-17 (173)
No 1
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-42 Score=367.70 Aligned_cols=241 Identities=37% Similarity=0.532 Sum_probs=204.8
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
..+|.+|+|+..|++++..+||..|||||..+||..+-|+|++.||.||||||.||+||+|++++-.... ....+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TR 254 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-----VAATR 254 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-----Cccee
Confidence 4579999999999999999999999999999999999999999999999999999999999998765432 34468
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
||||+||||||.|++.+.++++.+. .+.+++++||.+.+.|...+... +||+|+|||+|++||.+.. .++|++|.+
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~-PDIVIATPGRlIDHlrNs~--sf~ldsiEV 330 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSR-PDIVIATPGRLIDHLRNSP--SFNLDSIEV 330 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhC-CCEEEecchhHHHHhccCC--CccccceeE
Confidence 9999999999999999999999877 69999999999999888777776 6999999999999998876 467999999
Q ss_pred EEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh----cc-ccce--EeeeccccccccCccceEEEeehh
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV----LK-REHT--YIDTVGLGSVETPVKVSKYNIYVF 610 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~----l~-~~~~--~i~~~~~~~~~~~~~V~q~~i~v~ 610 (633)
||+||||+||+.+|..+|..|+..+|+++|+++||||++.++. +. ..++ ++++ ...+...+.|.|+-+.
T Consensus 331 LvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~----~~~~a~~LtQEFiRIR 406 (691)
T KOG0338|consen 331 LVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDP----NKDTAPKLTQEFIRIR 406 (691)
T ss_pred EEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCC----ccccchhhhHHHheec
Confidence 9999999999999999999999999999999999999999952 11 2222 3332 2456667888887432
Q ss_pred ---------hH-HHHhhcCCceEEEEEcccc
Q 006737 611 ---------VL-VLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ---------~l-~~~~k~~~~~~LVFcnT~s 631 (633)
++ .+....-...++||+.|+.
T Consensus 407 ~~re~dRea~l~~l~~rtf~~~~ivFv~tKk 437 (691)
T KOG0338|consen 407 PKREGDREAMLASLITRTFQDRTIVFVRTKK 437 (691)
T ss_pred cccccccHHHHHHHHHHhcccceEEEEehHH
Confidence 22 2233344568999999974
No 2
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=361.60 Aligned_cols=251 Identities=47% Similarity=0.703 Sum_probs=224.9
Q ss_pred CcccccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCC
Q 006737 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLV 453 (633)
Q Consensus 374 p~~~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~ 453 (633)
.+.+...|+++.|++.+++++..+||..+|++|+.+|+.++.|+|+++.|.||||||+||+||+++.+.+......
T Consensus 77 s~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r---- 152 (543)
T KOG0342|consen 77 SITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR---- 152 (543)
T ss_pred chhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC----
Confidence 3445567999999999999999999999999999999999999999999999999999999999999998765433
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 454 PPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 454 ~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
.++.||||+||||||.|++.+++++..++..+.+.++.||+......+.+.. +|+|+|||||+|+++|++..+ +...
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~--f~~r 229 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSG--FLFR 229 (543)
T ss_pred CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCc--chhh
Confidence 5678999999999999999999999999889999999999999988888887 799999999999999998865 3456
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh------hccccceEeeeccccccccCccceEEEe
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL------VLKREHTYIDTVGLGSVETPVKVSKYNI 607 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el------~l~~~~~~i~~~~~~~~~~~~~V~q~~i 607 (633)
.++++||||||+++++||...|.+|+..+|+++|+++||||+|.++ .+..++.+++++..+...++..++|.|+
T Consensus 230 ~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyv 309 (543)
T KOG0342|consen 230 NLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYV 309 (543)
T ss_pred ccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEE
Confidence 7799999999999999999999999999999999999999999995 4677899999999888899999999999
Q ss_pred ehh-------hHHHHhhcCC-ceEEEEEcccc
Q 006737 608 YVF-------VLVLSIKIQA-FYIICFVYTIS 631 (633)
Q Consensus 608 ~v~-------~l~~~~k~~~-~~~LVFcnT~s 631 (633)
++. ++..+.++.. ++++|||+|..
T Consensus 310 v~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~ 341 (543)
T KOG0342|consen 310 VAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCM 341 (543)
T ss_pred eccccchHHHHHHHHHHhcCCceEEEEechhh
Confidence 875 2223344444 89999999964
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-41 Score=353.88 Aligned_cols=241 Identities=36% Similarity=0.559 Sum_probs=208.3
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
...+|.+|++.+.+++++...||+.||+||+++||.++.|+|||+.|.||||||.+|+||++++++.... .+
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~--------~~ 130 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK--------LF 130 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC--------Cc
Confidence 3567999999999999999999999999999999999999999999999999999999999999998543 36
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
++|||+||||||.||.+.+..+.... +++++++.||..+..+...+... +||||||||+|.+++.+.. .+.+..++
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kk-PhilVaTPGrL~dhl~~Tk--gf~le~lk 206 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKK-PHILVATPGRLWDHLENTK--GFSLEQLK 206 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcC-CCEEEeCcHHHHHHHHhcc--CccHHHhH
Confidence 89999999999999999999998766 89999999999988777777654 7999999999999998765 36689999
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhcc-----ccceEeeeccccccccCccceEEEeehh-
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLK-----REHTYIDTVGLGSVETPVKVSKYNIYVF- 610 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l~-----~~~~~i~~~~~~~~~~~~~V~q~~i~v~- 610 (633)
++|+||||+++++.|...+..|+..+|..+|+++||||+|..+.-. .++..+.. ...+.+...++|.|+.+.
T Consensus 207 ~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~--s~ky~tv~~lkQ~ylfv~~ 284 (476)
T KOG0330|consen 207 FLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAV--SSKYQTVDHLKQTYLFVPG 284 (476)
T ss_pred HHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEec--cchhcchHHhhhheEeccc
Confidence 9999999999999999999999999999999999999999996321 22222222 233567778999999875
Q ss_pred ------hHHHHhhcCCceEEEEEcccc
Q 006737 611 ------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ------~l~~~~k~~~~~~LVFcnT~s 631 (633)
++.+++...+..+||||||.+
T Consensus 285 k~K~~yLV~ll~e~~g~s~iVF~~t~~ 311 (476)
T KOG0330|consen 285 KDKDTYLVYLLNELAGNSVIVFCNTCN 311 (476)
T ss_pred cccchhHHHHHHhhcCCcEEEEEeccc
Confidence 444555666679999999975
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-41 Score=366.03 Aligned_cols=245 Identities=33% Similarity=0.438 Sum_probs=209.0
Q ss_pred CccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 006737 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (633)
Q Consensus 380 ~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vL 459 (633)
.|++++|++.+..+|...||..|||||.++||+++.|+|++..|.|||||||+|+||++.++.... .......+|++|
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~--~~~~~~~~P~vL 169 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ--GKLSRGDGPIVL 169 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc--ccccCCCCCeEE
Confidence 699999999999999999999999999999999999999999999999999999999999998731 122334578999
Q ss_pred EEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEE
Q 006737 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (633)
Q Consensus 460 ILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LV 539 (633)
||+||||||.||..++..+.... .+++.|++||.....|...++.+ ++|+|||||+|+++|+.. ...|+++.|||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~g-vdiviaTPGRl~d~le~g---~~~l~~v~ylV 244 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERG-VDVVIATPGRLIDLLEEG---SLNLSRVTYLV 244 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcC-CcEEEeCChHHHHHHHcC---CccccceeEEE
Confidence 99999999999999999998765 58899999999999988888775 899999999999999988 58899999999
Q ss_pred EecccccCCcChHHHHHHHHHHC-CCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh---
Q 006737 540 LDEADHLLDLGFRKDVENIVDCL-PRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF--- 610 (633)
Q Consensus 540 IDEAD~Lld~gf~~~l~~Il~~l-pk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~--- 610 (633)
+||||+|+++||.+++..|+..+ ++.+|++++|||+|.++. +..++..+++..........+|.|...+|.
T Consensus 245 LDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~ 324 (519)
T KOG0331|consen 245 LDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETA 324 (519)
T ss_pred eccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHH
Confidence 99999999999999999999999 556799999999999963 223555555544434456667888888775
Q ss_pred -------hHHHHhhcCCceEEEEEcccc
Q 006737 611 -------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 -------~l~~~~k~~~~~~LVFcnT~s 631 (633)
++.........++||||+|+.
T Consensus 325 K~~~l~~lL~~~~~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 325 KLRKLGKLLEDISSDSEGKVIIFCETKR 352 (519)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEecchh
Confidence 222222334569999999985
No 5
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-39 Score=344.84 Aligned_cols=248 Identities=35% Similarity=0.519 Sum_probs=212.8
Q ss_pred cCccccC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 379 KRFDECG--ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 379 ~~F~el~--L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
..|++++ |++++++++..+||..+||+|..+||.+++++||++.|+||||||+||++|++..+.......+.. .+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~---~v 80 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG---QV 80 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc---ce
Confidence 4677775 559999999999999999999999999999999999999999999999999999997654432221 25
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
-+|||+||||||.||.+++..+..+.+++++.+++||.....+...++..+++|+|||||+|.+++..... .+.+.+++
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~-~l~~rsLe 159 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE-KLSFRSLE 159 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh-hccccccc
Confidence 69999999999999999999999988899999999999999999999999999999999999999987532 34566999
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh-
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF- 610 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~- 610 (633)
+||+||||+|+++||...++.|+..+|++++|-+||||.+.++. -.++++.+.........+|+.+..+|++|.
T Consensus 160 ~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a 239 (567)
T KOG0345|consen 160 ILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA 239 (567)
T ss_pred eEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH
Confidence 99999999999999999999999999999999999999999963 235566655444334458999999999986
Q ss_pred ------hHHHHhhcCCceEEEEEccc
Q 006737 611 ------VLVLSIKIQAFYIICFVYTI 630 (633)
Q Consensus 611 ------~l~~~~k~~~~~~LVFcnT~ 630 (633)
++..+......++|||++|=
T Consensus 240 ~eK~~~lv~~L~~~~~kK~iVFF~TC 265 (567)
T KOG0345|consen 240 DEKLSQLVHLLNNNKDKKCIVFFPTC 265 (567)
T ss_pred HHHHHHHHHHHhccccccEEEEecCc
Confidence 33444556667999999884
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-39 Score=361.23 Aligned_cols=243 Identities=39% Similarity=0.563 Sum_probs=204.8
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
..|++|++++.++++|.++||..|||||..+||.++.|+|++++|+||||||+||+||+|+++...... ....+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~------~~~~a 102 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVER------KYVSA 102 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccccc------CCCce
Confidence 569999999999999999999999999999999999999999999999999999999999997643110 00119
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEE
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~L 538 (633)
|||+||||||.||++++..+..+..++++++++||.+...+...+..+ +||||||||||++++.+. .+.++.+++|
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~-~~ivVaTPGRllD~i~~~---~l~l~~v~~l 178 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRG-VDIVVATPGRLLDLIKRG---KLDLSGVETL 178 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcC-CCEEEECccHHHHHHHcC---CcchhhcCEE
Confidence 999999999999999999999876578899999999999888888774 899999999999999887 5889999999
Q ss_pred EEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh---
Q 006737 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF--- 610 (633)
Q Consensus 539 VIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~--- 610 (633)
|+||||+|+++||.+++..|+..+|.++|+++||||+|..+. +..++..+.........+...|.|+|+.+.
T Consensus 179 VlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~ 258 (513)
T COG0513 179 VLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE 258 (513)
T ss_pred EeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH
Confidence 999999999999999999999999999999999999999752 233444443322222337789999999885
Q ss_pred ----hHHH-HhhcCCceEEEEEcccc
Q 006737 611 ----VLVL-SIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ----~l~~-~~k~~~~~~LVFcnT~s 631 (633)
.+.. +......++||||+|+.
T Consensus 259 ~k~~~L~~ll~~~~~~~~IVF~~tk~ 284 (513)
T COG0513 259 EKLELLLKLLKDEDEGRVIVFVRTKR 284 (513)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCcHH
Confidence 2222 22334457999999975
No 7
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-39 Score=345.11 Aligned_cols=246 Identities=35% Similarity=0.546 Sum_probs=211.9
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
..+.|++|+|+..++++|.+.+|..||.||+.+||..|.|+|||..|.|||||||||++|+|++|+..+-.. ..|+
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~----~DGl 142 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP----TDGL 142 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC----CCCc
Confidence 456799999999999999999999999999999999999999999999999999999999999999876543 3466
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
-||||+||||||.|++.++.+.++++ .+..++++||........++. .++|||||||+|+.+|.... .+..+++.
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi~--~mNILVCTPGRLLQHmde~~--~f~t~~lQ 217 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERIS--QMNILVCTPGRLLQHMDENP--NFSTSNLQ 217 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhhh--cCCeEEechHHHHHHhhhcC--CCCCCcce
Confidence 79999999999999999999999877 899999999999877666665 47999999999999998765 35678999
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh-
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF- 610 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~- 610 (633)
+||+||||+|+++||..++..|++.+|+.+|+++||||-++.+. ...++.+|.+.......+|.++.|+|+.|.
T Consensus 218 mLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l 297 (758)
T KOG0343|consen 218 MLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL 297 (758)
T ss_pred EEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh
Confidence 99999999999999999999999999999999999999999852 225667776554445778999999999986
Q ss_pred -----hH-HHHhhcCCceEEEEEcccc
Q 006737 611 -----VL-VLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 -----~l-~~~~k~~~~~~LVFcnT~s 631 (633)
++ .........+.|||+.|-.
T Consensus 298 ~~Ki~~L~sFI~shlk~K~iVF~SscK 324 (758)
T KOG0343|consen 298 EDKIDMLWSFIKSHLKKKSIVFLSSCK 324 (758)
T ss_pred hhHHHHHHHHHHhccccceEEEEehhh
Confidence 11 1222333468999998853
No 8
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-38 Score=335.59 Aligned_cols=257 Identities=33% Similarity=0.511 Sum_probs=209.3
Q ss_pred CCCCCcccccCccccCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCC
Q 006737 370 REEEPILSQKRFDECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSS 448 (633)
Q Consensus 370 ~~~~p~~~~~~F~el~L~~~Ll~~L~~-~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~ 448 (633)
...+.+++...|..|||++.++..|.. +++..||.+|+++||.+++|+|++|.++||||||+||+||+++.|.....
T Consensus 127 ~v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~-- 204 (708)
T KOG0348|consen 127 QVSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP-- 204 (708)
T ss_pred cccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc--
Confidence 334455566789999999999999986 79999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCc
Q 006737 449 TTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL 528 (633)
Q Consensus 449 ~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~ 528 (633)
..++..|+.||||+||||||.|+|+.++++.+.+.-+..+.+.||...+.+..++..+ ++|||+|||||+++|.+..
T Consensus 205 ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG-iNILIgTPGRLvDHLknT~-- 281 (708)
T KOG0348|consen 205 KIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG-INILIGTPGRLVDHLKNTK-- 281 (708)
T ss_pred cccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC-ceEEEcCchHHHHHHhccc--
Confidence 3456788999999999999999999999999888778889999999988888888765 8999999999999998875
Q ss_pred ccccCCeeEEEEecccccCCcChHHHHHHHHHHCC-------------CCCcEEEEeccCChhhh-----ccccceEeee
Q 006737 529 SVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP-------------RRRQSLLFSATMPKELV-----LKREHTYIDT 590 (633)
Q Consensus 529 ~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp-------------k~~Q~IlfSATl~~el~-----l~~~~~~i~~ 590 (633)
.+.++.+++||+||||+|++.||...|..|++.+. ...|.+++|||++..+. ...++++|..
T Consensus 282 ~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~l 361 (708)
T KOG0348|consen 282 SIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISL 361 (708)
T ss_pred hheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeec
Confidence 45688999999999999999999999999988772 23789999999999852 1234445440
Q ss_pred c----------------c-------ccccccCccceEEEeehh----------hHHHHhh-cCCceEEEEEcccc
Q 006737 591 V----------------G-------LGSVETPVKVSKYNIYVF----------VLVLSIK-IQAFYIICFVYTIS 631 (633)
Q Consensus 591 ~----------------~-------~~~~~~~~~V~q~~i~v~----------~l~~~~k-~~~~~~LVFcnT~s 631 (633)
. . .+....|.++.|.|.+|+ ++....+ ....++|||+++..
T Consensus 362 d~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d 436 (708)
T KOG0348|consen 362 DKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSD 436 (708)
T ss_pred cchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechh
Confidence 0 0 011345677888888876 2222222 22348999998864
No 9
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.9e-36 Score=339.63 Aligned_cols=246 Identities=32% Similarity=0.438 Sum_probs=198.5
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
+..+|+++++++.++++|.++||.+||++|.++||.+++|+|+|++||||||||++|+||++.++...... ....++
T Consensus 128 p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~---~~~~gp 204 (545)
T PTZ00110 128 PVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL---RYGDGP 204 (545)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc---cCCCCc
Confidence 34679999999999999999999999999999999999999999999999999999999999988764321 112357
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
++|||+||||||.|+.+.+..+.... ++++.+++|+.....+...+.. +++|||+||++|++++... ...|.+++
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~~-~~~IlVaTPgrL~d~l~~~---~~~l~~v~ 279 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYALRR-GVEILIACPGRLIDFLESN---VTNLRRVT 279 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHHHc-CCCEEEECHHHHHHHHHcC---CCChhhCc
Confidence 89999999999999999999987654 7889999999887777666655 4899999999999999865 36789999
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhc------cccceEeeeccccccccCccceEEEeehh
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVL------KREHTYIDTVGLGSVETPVKVSKYNIYVF 610 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l------~~~~~~i~~~~~~~~~~~~~V~q~~i~v~ 610 (633)
+|||||||+|++++|..++..|+..+++++|+++||||+|.++.. ...+..+...... .....+++|.+.++.
T Consensus 280 ~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~-l~~~~~i~q~~~~~~ 358 (545)
T PTZ00110 280 YLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-LTACHNIKQEVFVVE 358 (545)
T ss_pred EEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-cccCCCeeEEEEEEe
Confidence 999999999999999999999999999999999999999988531 1223333221111 233456777776553
Q ss_pred -------hHHHHhhc--CCceEEEEEcccc
Q 006737 611 -------VLVLSIKI--QAFYIICFVYTIS 631 (633)
Q Consensus 611 -------~l~~~~k~--~~~~~LVFcnT~s 631 (633)
+...+... ...++||||+|+.
T Consensus 359 ~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~ 388 (545)
T PTZ00110 359 EHEKRGKLKMLLQRIMRDGDKILIFVETKK 388 (545)
T ss_pred chhHHHHHHHHHHHhcccCCeEEEEecChH
Confidence 11111111 4569999999975
No 10
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-37 Score=323.52 Aligned_cols=248 Identities=29% Similarity=0.456 Sum_probs=205.7
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
.+|++|+|+++|++++.+.||.+||-||+.+||.++.|+|+++.|.||||||+||+||+++.++...... ....++.+
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa 96 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSA 96 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc--ccccccee
Confidence 6899999999999999999999999999999999999999999999999999999999999999876543 33456789
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCC-CceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 459 LILCPTRELASQIAAEAIALLKNHD-GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~-~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+||+||+|||.|++.++.++..++. .+++.-+....+..... ......++|+|+||++|+.++..+. ...+..+++
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~-~~L~d~pdIvV~TP~~ll~~~~~~~--~~~~~~l~~ 173 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS-VALMDLPDIVVATPAKLLRHLAAGV--LEYLDSLSF 173 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH-HHHccCCCeEEeChHHHHHHHhhcc--chhhhheee
Confidence 9999999999999999999987764 45555555444444344 4444568999999999999998763 256889999
Q ss_pred EEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh--
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF-- 610 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~-- 610 (633)
||+||||.++..||.+.+..|...+|+.+|.++||||++..+. +..+++++.. .......+.++.|+++.|.
T Consensus 174 LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl-~e~el~~~dqL~Qy~v~cse~ 252 (569)
T KOG0346|consen 174 LVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKL-TEGELPNPDQLTQYQVKCSEE 252 (569)
T ss_pred EEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEe-ccccCCCcccceEEEEEeccc
Confidence 9999999999999999999999999999999999999999963 3355555543 3334557789999999986
Q ss_pred ------hHHHHhhcCCceEEEEEccccC
Q 006737 611 ------VLVLSIKIQAFYIICFVYTISM 632 (633)
Q Consensus 611 ------~l~~~~k~~~~~~LVFcnT~s~ 632 (633)
+..........++|||+||+.+
T Consensus 253 DKflllyallKL~LI~gKsliFVNtIdr 280 (569)
T KOG0346|consen 253 DKFLLLYALLKLRLIRGKSLIFVNTIDR 280 (569)
T ss_pred hhHHHHHHHHHHHHhcCceEEEEechhh
Confidence 2223344556799999999864
No 11
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-36 Score=314.53 Aligned_cols=311 Identities=27% Similarity=0.353 Sum_probs=234.9
Q ss_pred chhhhhcCCCcccCcccc--cccccCCCCCCCCccchHHHHHHHHHHhhccccCCCCCccccCCCCCcccccCccc-cCC
Q 006737 310 WRDVKKMGSSASLGKYDM--KITKRVPLKSLEDEHDFEEQVELIRKEISKNKLNGNGEKKEKREEEPILSQKRFDE-CGI 386 (633)
Q Consensus 310 ~~~~~~~~~s~~~~~~~~--k~~~~~~~~~~e~e~e~ee~ve~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~~F~e-l~L 386 (633)
++.+.+..-......|.. ..++..+..+.+.......++..++++..+..... .+..+..+.|. +..+|++ ++.
T Consensus 151 we~~~~~~l~~e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd--~K~gekrpIPn-P~ctFddAFq~ 227 (629)
T KOG0336|consen 151 WESIREARLKDEKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDD--LKEGEKRPIPN-PVCTFDDAFQC 227 (629)
T ss_pred HHHHHHHHhhhhhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecc--cccCCcccCCC-CcCcHHHHHhh
Confidence 333333333333445554 45555566677777778888888888766555432 23333333333 3456776 578
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHH
Q 006737 387 SPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE 466 (633)
Q Consensus 387 ~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTRe 466 (633)
.+++++.+.+.||.+|||||.++||.+|.|.|++.+|.||+|||++||+|.+.|+....... ....++.+|+++|||+
T Consensus 228 ~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~--~qr~~p~~lvl~ptre 305 (629)
T KOG0336|consen 228 YPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRR--EQRNGPGVLVLTPTRE 305 (629)
T ss_pred hHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhh--hccCCCceEEEeccHH
Confidence 89999999999999999999999999999999999999999999999999998887654321 2445788999999999
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccccc
Q 006737 467 LASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546 (633)
Q Consensus 467 La~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~L 546 (633)
||.|+.-++.++. +.+++..|++||.+...+.+.++.+ .+|+|+||++|.++...+ .++|.+|.||||||||+|
T Consensus 306 Lalqie~e~~kys--yng~ksvc~ygggnR~eqie~lkrg-veiiiatPgrlndL~~~n---~i~l~siTYlVlDEADrM 379 (629)
T KOG0336|consen 306 LALQIEGEVKKYS--YNGLKSVCVYGGGNRNEQIEDLKRG-VEIIIATPGRLNDLQMDN---VINLASITYLVLDEADRM 379 (629)
T ss_pred HHHHHHhHHhHhh--hcCcceEEEecCCCchhHHHHHhcC-ceEEeeCCchHhhhhhcC---eeeeeeeEEEEecchhhh
Confidence 9999988887775 3489999999999988888888765 899999999999998776 588999999999999999
Q ss_pred CCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh------hHHH-
Q 006737 547 LDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF------VLVL- 614 (633)
Q Consensus 547 ld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~------~l~~- 614 (633)
|++||..++.+|+--+.+++|+++.|||+|+.+. ...++.++- ++.-.......|+|+.++-. .+..
T Consensus 380 LDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~-vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f 458 (629)
T KOG0336|consen 380 LDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVY-VGSLDLVAVKSVKQNIIVTTDSEKLEIVQFF 458 (629)
T ss_pred hcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEE-ecccceeeeeeeeeeEEecccHHHHHHHHHH
Confidence 9999999999999999999999999999999963 223333321 11111223456888876432 1111
Q ss_pred -HhhcCCceEEEEEccccC
Q 006737 615 -SIKIQAFYIICFVYTISM 632 (633)
Q Consensus 615 -~~k~~~~~~LVFcnT~s~ 632 (633)
.......++||||..+.+
T Consensus 459 ~~~ms~ndKvIiFv~~K~~ 477 (629)
T KOG0336|consen 459 VANMSSNDKVIIFVSRKVM 477 (629)
T ss_pred HHhcCCCceEEEEEechhh
Confidence 224455799999998754
No 12
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-37 Score=331.13 Aligned_cols=200 Identities=32% Similarity=0.485 Sum_probs=171.8
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCCchhhhHHHHHHHHHHhcCC-----CCC
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSS-----STT 450 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~g-rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~-----~~~ 450 (633)
....|..|+++..++++|.++||..||+||..+||++..| .|++..|.|||||||||-||+++.+...... ...
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 4456999999999999999999999999999999999999 5999999999999999999999966543211 111
Q ss_pred CCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCccc
Q 006737 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSV 530 (633)
Q Consensus 451 ~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~ 530 (633)
.....+.+||++||||||.||.+.+..++.+ +++++..++||.....+++.+.. .++|+|||||||+.++........
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~-~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQ-RPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhc-CCCEEEecchHHHHHHHhhhhhhh
Confidence 2223345999999999999999999998874 59999999999999988877776 579999999999999987644345
Q ss_pred ccCCeeEEEEecccccCCcChHHHHHHHHHHCC-----CCCcEEEEeccCChh
Q 006737 531 RLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP-----RRRQSLLFSATMPKE 578 (633)
Q Consensus 531 ~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp-----k~~Q~IlfSATl~~e 578 (633)
.+++|++|||||||+|++.|+...+..|++.++ ..+|+++||||++-.
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~ 389 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLV 389 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehh
Confidence 688999999999999999999999999998886 368999999999765
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-35 Score=324.17 Aligned_cols=246 Identities=31% Similarity=0.469 Sum_probs=197.4
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
.++|++++|++.++++|.++||..||++|.+|||.+++|+|++++||||||||++|++|+++.+....... .....+++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~-~~~~~~~~ 85 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE-DRKVNQPR 85 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc-ccccCCce
Confidence 36799999999999999999999999999999999999999999999999999999999999987643211 11123578
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+|||+|||+||.|+++.+..+.... ++.+.+++||.....+...+.. +++|||+||++|.+++... .+.++++++
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~-~~~IlV~TP~~l~~~l~~~---~~~l~~v~~ 160 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLES-GVDILIGTTGRLIDYAKQN---HINLGAIQV 160 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcC-CCCEEEECHHHHHHHHHcC---CcccccccE
Confidence 9999999999999999999998765 7999999999887776666654 5799999999999999765 467899999
Q ss_pred EEEecccccCCcChHHHHHHHHHHCCC--CCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCLPR--RRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF 610 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~lpk--~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~ 610 (633)
|||||||+|++++|...+..++..++. .+|+++||||++..+. ...++.++..... ......+.+.++++.
T Consensus 161 lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~--~~~~~~i~~~~~~~~ 238 (423)
T PRK04837 161 VVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPE--QKTGHRIKEELFYPS 238 (423)
T ss_pred EEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCC--CcCCCceeEEEEeCC
Confidence 999999999999999999999999984 5788999999998753 1223344432211 223456777766653
Q ss_pred ------hH-HHHhhcCCceEEEEEcccc
Q 006737 611 ------VL-VLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ------~l-~~~~k~~~~~~LVFcnT~s 631 (633)
.+ .........++||||||+.
T Consensus 239 ~~~k~~~l~~ll~~~~~~~~lVF~~t~~ 266 (423)
T PRK04837 239 NEEKMRLLQTLIEEEWPDRAIIFANTKH 266 (423)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHH
Confidence 11 1222334578999999974
No 14
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-36 Score=304.19 Aligned_cols=243 Identities=28% Similarity=0.434 Sum_probs=207.0
Q ss_pred cccccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCC
Q 006737 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP 454 (633)
Q Consensus 375 ~~~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~ 454 (633)
+....+|+++||++.+++++.+.||++|+.||+.||++|+.|+||+++|.+|+|||.+|.+.+|+.+.-...
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r-------- 94 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVR-------- 94 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccc--------
Confidence 334567999999999999999999999999999999999999999999999999999999999877644332
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCC
Q 006737 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (633)
Q Consensus 455 ~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~ 534 (633)
..+||||+||||||.|+.+.+..++.++ ++.+..+.||.+...+.+.+. .+++++.+|||+++++++.. .+.-..
T Consensus 95 ~tQ~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld-~G~hvVsGtPGrv~dmikr~---~L~tr~ 169 (400)
T KOG0328|consen 95 ETQALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLD-YGQHVVSGTPGRVLDMIKRR---SLRTRA 169 (400)
T ss_pred eeeEEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhc-ccceEeeCCCchHHHHHHhc---cccccc
Confidence 2579999999999999999999998766 899999999999998888887 56899999999999999887 577889
Q ss_pred eeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeeh
Q 006737 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYV 609 (633)
Q Consensus 535 l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v 609 (633)
+++||+||||.||+.||..++..|+..+|+..|++++|||+|.++. +..+++.+-.... .-+...++|+|+.+
T Consensus 170 vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrd--eltlEgIKqf~v~v 247 (400)
T KOG0328|consen 170 VKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRD--ELTLEGIKQFFVAV 247 (400)
T ss_pred eeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecC--CCchhhhhhheeee
Confidence 9999999999999999999999999999999999999999999963 3445544432222 33556799999987
Q ss_pred h--------hHHHHhhcCCceEEEEEccccC
Q 006737 610 F--------VLVLSIKIQAFYIICFVYTISM 632 (633)
Q Consensus 610 ~--------~l~~~~k~~~~~~LVFcnT~s~ 632 (633)
. +-.......-.+++|||||+.+
T Consensus 248 e~EewKfdtLcdLYd~LtItQavIFcnTk~k 278 (400)
T KOG0328|consen 248 EKEEWKFDTLCDLYDTLTITQAVIFCNTKRK 278 (400)
T ss_pred chhhhhHhHHHHHhhhhehheEEEEecccch
Confidence 5 2223345556799999999853
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.9e-35 Score=327.54 Aligned_cols=243 Identities=35% Similarity=0.525 Sum_probs=195.9
Q ss_pred CccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 006737 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (633)
Q Consensus 380 ~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vL 459 (633)
+|++|+|++.++++|.++||..||++|.++||.++.|+|+|++||||||||+||++|+++.+...... .....++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~--~~~~~~~~aL 79 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH--AKGRRPVRAL 79 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc--cccCCCceEE
Confidence 69999999999999999999999999999999999999999999999999999999999998764321 1122346899
Q ss_pred EEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEE
Q 006737 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (633)
Q Consensus 460 ILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LV 539 (633)
||+||++||.|+++.+..+.... ++.+..++|+.....+...+. ..++|||+||++|++++... ...++++++||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~-~~~~IiV~TP~rL~~~~~~~---~~~l~~v~~lV 154 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLR-GGVDVLVATPGRLLDLEHQN---AVKLDQVEILV 154 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHc-CCCcEEEEChHHHHHHHHcC---CcccccceEEE
Confidence 99999999999999999988755 788899999998777666554 45799999999999988765 36789999999
Q ss_pred EecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh----
Q 006737 540 LDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF---- 610 (633)
Q Consensus 540 IDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~---- 610 (633)
|||||+|++++|...+..++..++..+|+++||||+++++. +..++..+.... .......+.+++.++.
T Consensus 155 iDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k 232 (456)
T PRK10590 155 LDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVAR--RNTASEQVTQHVHFVDKKRK 232 (456)
T ss_pred eecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEec--ccccccceeEEEEEcCHHHH
Confidence 99999999999999999999999999999999999998742 222333332211 1223456777776654
Q ss_pred --hHHHH-hhcCCceEEEEEcccc
Q 006737 611 --VLVLS-IKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 --~l~~~-~k~~~~~~LVFcnT~s 631 (633)
++... ......++||||||+.
T Consensus 233 ~~~l~~l~~~~~~~~~lVF~~t~~ 256 (456)
T PRK10590 233 RELLSQMIGKGNWQQVLVFTRTKH 256 (456)
T ss_pred HHHHHHHHHcCCCCcEEEEcCcHH
Confidence 22222 2234468999999975
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.9e-35 Score=327.64 Aligned_cols=238 Identities=36% Similarity=0.533 Sum_probs=198.4
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
.+|++|+|++.++++|.++||..|||+|.+|||.++.|+|++++||||||||++|++|+++++.... ..+++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~~ 75 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQA 75 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCceE
Confidence 5699999999999999999999999999999999999999999999999999999999999875332 13579
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEE
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~L 538 (633)
|||+||++||.|+.+.++.+.....++++..++||.+...+...+. .+++|+|+||++|.+++.+. ...+.++++|
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~-~~~~IvV~Tp~rl~~~l~~~---~~~l~~l~~l 151 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE-HGAHIIVGTPGRILDHLRKG---TLDLDALNTL 151 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc-CCCCEEEEChHHHHHHHHcC---CccHHHCCEE
Confidence 9999999999999999999987766899999999999887777666 45799999999999999765 4678999999
Q ss_pred EEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhc-----cccceEeeeccccccccCccceEEEeehh---
Q 006737 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKVSKYNIYVF--- 610 (633)
Q Consensus 539 VIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l-----~~~~~~i~~~~~~~~~~~~~V~q~~i~v~--- 610 (633)
||||||+|++++|...+..++..++..+|+++||||+++.+.. ...+..+.... ......+.|.++.+.
T Consensus 152 ViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~---~~~~~~i~~~~~~~~~~~ 228 (460)
T PRK11776 152 VLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVES---THDLPAIEQRFYEVSPDE 228 (460)
T ss_pred EEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECc---CCCCCCeeEEEEEeCcHH
Confidence 9999999999999999999999999999999999999988532 23333333221 223445788777664
Q ss_pred ----hHHHHhhcCCceEEEEEcccc
Q 006737 611 ----VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ----~l~~~~k~~~~~~LVFcnT~s 631 (633)
+...+......++||||||+.
T Consensus 229 k~~~l~~ll~~~~~~~~lVF~~t~~ 253 (460)
T PRK11776 229 RLPALQRLLLHHQPESCVVFCNTKK 253 (460)
T ss_pred HHHHHHHHHHhcCCCceEEEECCHH
Confidence 222233445568999999975
No 17
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=311.01 Aligned_cols=244 Identities=37% Similarity=0.480 Sum_probs=202.8
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
+.+.|+.|||++++.+.|+.+|+.+|||+|..|||.|+.|+|+|.+|.||||||++|.||+|+++.+... +.
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~--------gi 76 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY--------GI 76 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC--------cc
Confidence 3467999999999999999999999999999999999999999999999999999999999999977654 46
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccC-cccccCCe
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG-LSVRLMGL 535 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~-~~~~Ls~l 535 (633)
.+||++||||||.|+.+.|..+.+.. ++++.+++||.+.-.+...+... +||||+|||+|.+++..... ...-+.++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~r-PHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDR-PHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccC-CCeEecCccccccccccCCccchhhhhce
Confidence 89999999999999999999987755 89999999999987766666554 79999999999999976632 23348899
Q ss_pred eEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhcc-ccc----eEeeeccccccccCccceEEEeehh
Q 006737 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLK-REH----TYIDTVGLGSVETPVKVSKYNIYVF 610 (633)
Q Consensus 536 ~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l~-~~~----~~i~~~~~~~~~~~~~V~q~~i~v~ 610 (633)
+++|+||||++++..|-..+..|.+.+|+.+|+++||||+++.+.-. ..+ .......+..+.++..+.|.|++|.
T Consensus 155 kflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~ 234 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVS 234 (442)
T ss_pred eeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecc
Confidence 99999999999999999999999999999999999999999986321 111 1111122234677888999999886
Q ss_pred ----------hHHHHhhcCCceEEEEEccc
Q 006737 611 ----------VLVLSIKIQAFYIICFVYTI 630 (633)
Q Consensus 611 ----------~l~~~~k~~~~~~LVFcnT~ 630 (633)
.+..........++||+||-
T Consensus 235 ~~vkdaYLv~~Lr~~~~~~~~simIFvntt 264 (442)
T KOG0340|consen 235 IDVKDAYLVHLLRDFENKENGSIMIFVNTT 264 (442)
T ss_pred hhhhHHHHHHHHhhhhhccCceEEEEeehh
Confidence 22222233566899999984
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.9e-35 Score=338.16 Aligned_cols=240 Identities=35% Similarity=0.528 Sum_probs=198.9
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
.++|.+|+|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||+||++|+++.+.... ..++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~--------~~~~ 76 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL--------KAPQ 76 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc--------CCCe
Confidence 45699999999999999999999999999999999999999999999999999999999998875432 2358
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+|||+||++||.|+++.+..+.....++.+..++||.....+...+.. .++|||+||++|++++... .+.+++|.+
T Consensus 77 ~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~-~~~IVVgTPgrl~d~l~r~---~l~l~~l~~ 152 (629)
T PRK11634 77 ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ-GPQIVVGTPGRLLDHLKRG---TLDLSKLSG 152 (629)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcC-CCCEEEECHHHHHHHHHcC---CcchhhceE
Confidence 999999999999999999999887778999999999988777666654 4799999999999999765 467899999
Q ss_pred EEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh--
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF-- 610 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~-- 610 (633)
|||||||+|++++|...+..|+..+|..+|+++||||+|+.+. +..++..+.... .......+.|.|+.+.
T Consensus 153 lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~--~~~~~~~i~q~~~~v~~~ 230 (629)
T PRK11634 153 LVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGM 230 (629)
T ss_pred EEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccC--ccccCCceEEEEEEechh
Confidence 9999999999999999999999999999999999999998853 222333332221 1234456777776553
Q ss_pred -----hHHHHhhcCCceEEEEEcccc
Q 006737 611 -----VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 -----~l~~~~k~~~~~~LVFcnT~s 631 (633)
+...+......++||||||+.
T Consensus 231 ~k~~~L~~~L~~~~~~~~IVF~~tk~ 256 (629)
T PRK11634 231 RKNEALVRFLEAEDFDAAIIFVRTKN 256 (629)
T ss_pred hHHHHHHHHHHhcCCCCEEEEeccHH
Confidence 222233344568999999975
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.8e-35 Score=330.99 Aligned_cols=246 Identities=31% Similarity=0.480 Sum_probs=194.9
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
.+|++|+|++.++++|.++||..||+||.++||.++.|+|++++||||||||++|++|+++.+....... ......+++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~-~~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA-DRKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc-ccccCCceE
Confidence 4699999999999999999999999999999999999999999999999999999999999987542110 111124689
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEE
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~L 538 (633)
|||+||+|||.|+++.+..++... ++.+..++|+.....+...+.. +++|||+||++|++++.+.. .+.+..+++|
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~-~~dIiV~TP~rL~~~l~~~~--~~~l~~v~~l 163 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQ-GVDVIIATPGRLIDYVKQHK--VVSLHACEIC 163 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhC-CCCEEEECHHHHHHHHHhcc--ccchhheeee
Confidence 999999999999999999988765 7899999999988766665554 57999999999999987642 2457899999
Q ss_pred EEecccccCCcChHHHHHHHHHHCCC--CCcEEEEeccCChhhhcc-----ccceEeeeccccccccCccceEEEeehh-
Q 006737 539 VLDEADHLLDLGFRKDVENIVDCLPR--RRQSLLFSATMPKELVLK-----REHTYIDTVGLGSVETPVKVSKYNIYVF- 610 (633)
Q Consensus 539 VIDEAD~Lld~gf~~~l~~Il~~lpk--~~Q~IlfSATl~~el~l~-----~~~~~i~~~~~~~~~~~~~V~q~~i~v~- 610 (633)
||||||+|++++|...+..|+..++. .+|+++||||++..+... ..+..+.... .......+.|.++++.
T Consensus 164 ViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~--~~~~~~~i~q~~~~~~~ 241 (572)
T PRK04537 164 VLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVET--ETITAARVRQRIYFPAD 241 (572)
T ss_pred EecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecc--ccccccceeEEEEecCH
Confidence 99999999999999999999999987 789999999999874211 1221111111 1223456777776553
Q ss_pred ------hHHHHhhcCCceEEEEEcccc
Q 006737 611 ------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ------~l~~~~k~~~~~~LVFcnT~s 631 (633)
++..+......++||||||+.
T Consensus 242 ~~k~~~L~~ll~~~~~~k~LVF~nt~~ 268 (572)
T PRK04537 242 EEKQTLLLGLLSRSEGARTMVFVNTKA 268 (572)
T ss_pred HHHHHHHHHHHhcccCCcEEEEeCCHH
Confidence 222233345679999999974
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.6e-34 Score=324.85 Aligned_cols=246 Identities=30% Similarity=0.444 Sum_probs=195.1
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
+..+|++++|++.++++|.+.||..|||+|.++||.++.|+|++++||||||||++|++|++.++....... .....++
T Consensus 119 pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~-~~~~~~~ 197 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH-PSEQRNP 197 (518)
T ss_pred hhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc-ccccCCc
Confidence 446799999999999999999999999999999999999999999999999999999999999887532211 1112457
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
++|||+||||||.|+++.+..+.... ++++.+++||.....+...+.. +++|||+||++|.+++... ...++++.
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l~~-~~~IiV~TPgrL~~~l~~~---~~~l~~v~ 272 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRIQQ-GVELIVGTPGRLIDLLSKH---DIELDNVS 272 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHhcC-CCCEEEECHHHHHHHHHcC---Cccchhee
Confidence 89999999999999999999887655 6788889999887777666654 4799999999999999776 46789999
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh-
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF- 610 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~- 610 (633)
+|||||||+|++++|..++..|+..++ ..|+++||||+++++. +..+...+..... ......+.|.++++.
T Consensus 273 ~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~--~~~~~~v~q~~~~~~~ 349 (518)
T PLN00206 273 VLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNP--NRPNKAVKQLAIWVET 349 (518)
T ss_pred EEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC--CCCCcceeEEEEeccc
Confidence 999999999999999999999999885 6899999999999853 2223333332111 223345777777654
Q ss_pred ------hHHHHhh--cCCceEEEEEcccc
Q 006737 611 ------VLVLSIK--IQAFYIICFVYTIS 631 (633)
Q Consensus 611 ------~l~~~~k--~~~~~~LVFcnT~s 631 (633)
++..+.. ....++||||||+.
T Consensus 350 ~~k~~~l~~~l~~~~~~~~~~iVFv~s~~ 378 (518)
T PLN00206 350 KQKKQKLFDILKSKQHFKPPAVVFVSSRL 378 (518)
T ss_pred hhHHHHHHHHHHhhcccCCCEEEEcCCch
Confidence 1111111 12357999999975
No 21
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=307.35 Aligned_cols=237 Identities=32% Similarity=0.483 Sum_probs=204.6
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
..|+++.|...++..+.+.||++|+|+|.++||..+.|+|+++-|..|+|||.||++|+|+.+..... .+++
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~--------~IQ~ 156 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKN--------VIQA 156 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcccc--------ceeE
Confidence 35999999999999999999999999999999999999999999999999999999999998754432 4789
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEE
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~L 538 (633)
+|++||||||.|+.+.++.+.+++ ++.+...+||++...+..++.. ..|++|+|||+++++++.+ ...+++..++
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~~-~VH~~vgTPGRIlDL~~Kg---Va~ls~c~~l 231 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLNQ-TVHLVVGTPGRILDLAKKG---VADLSDCVIL 231 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeecC-ceEEEEcCChhHHHHHhcc---cccchhceEE
Confidence 999999999999999999999877 7999999999999988877765 4899999999999999887 4568999999
Q ss_pred EEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhcc-----ccceEeeeccccccccCccceEEEeehh---
Q 006737 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLK-----REHTYIDTVGLGSVETPVKVSKYNIYVF--- 610 (633)
Q Consensus 539 VIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l~-----~~~~~i~~~~~~~~~~~~~V~q~~i~v~--- 610 (633)
|+||||.|+...|...+..++..+|+++|++++|||+|-.+.-. ..+..|+.. ..-++..|.|+|.++.
T Consensus 232 V~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM---~eLtl~GvtQyYafV~e~q 308 (459)
T KOG0326|consen 232 VMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM---EELTLKGVTQYYAFVEERQ 308 (459)
T ss_pred EechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh---hhhhhcchhhheeeechhh
Confidence 99999999999999999999999999999999999999886422 223333322 2456788999999875
Q ss_pred ----hHHHHhhcCCceEEEEEcccc
Q 006737 611 ----VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ----~l~~~~k~~~~~~LVFcnT~s 631 (633)
+-....+.+-.+.||||||..
T Consensus 309 KvhCLntLfskLqINQsIIFCNS~~ 333 (459)
T KOG0326|consen 309 KVHCLNTLFSKLQINQSIIFCNSTN 333 (459)
T ss_pred hhhhHHHHHHHhcccceEEEeccch
Confidence 112234666779999999974
No 22
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-35 Score=311.29 Aligned_cols=251 Identities=31% Similarity=0.427 Sum_probs=210.0
Q ss_pred CCcccccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCC
Q 006737 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQL 452 (633)
Q Consensus 373 ~p~~~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~ 452 (633)
.|.-+.++|++++++..|..++.+..|.+|||+|.+++|..+.|+||+..|.||||||.||+.|++.|++....- ..
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL---~~ 293 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPEL---KP 293 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhh---cC
Confidence 344456789999999999999999999999999999999999999999999999999999999999999876431 22
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 453 VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 453 ~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
..+|.+||+||||+||.||+.+++++++.+ ++++.+++||.+...|...|+ .++.|||||||||++++... ..++
T Consensus 294 g~gPi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk-~g~EivVaTPgRlid~VkmK---atn~ 368 (731)
T KOG0339|consen 294 GEGPIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELK-EGAEIVVATPGRLIDMVKMK---ATNL 368 (731)
T ss_pred CCCCeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhh-cCCeEEEechHHHHHHHHhh---cccc
Confidence 457889999999999999999999998877 899999999999999999998 56899999999999999876 4789
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhccccceEeeeccc---cccccCccceEEEeeh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGL---GSVETPVKVSKYNIYV 609 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l~~~~~~i~~~~~---~~~~~~~~V~q~~i~v 609 (633)
.++.||||||||+|+++||..++..|...+.+++|+|+||||++..+.-.....+.+++.+ ........|.|.+.+|
T Consensus 369 ~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~ 448 (731)
T KOG0339|consen 369 SRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVC 448 (731)
T ss_pred eeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeec
Confidence 9999999999999999999999999999999999999999999999743322222222221 2234566899998888
Q ss_pred h--------hHHHHhh-cCCceEEEEEcccc
Q 006737 610 F--------VLVLSIK-IQAFYIICFVYTIS 631 (633)
Q Consensus 610 ~--------~l~~~~k-~~~~~~LVFcnT~s 631 (633)
. ++..+.. .....+|||+..+.
T Consensus 449 ~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 449 PSEEKKLNWLLRHLVEFSSEGKVLIFVTKKA 479 (731)
T ss_pred cCcHHHHHHHHHHhhhhccCCcEEEEEeccC
Confidence 5 2222222 22348999987553
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5e-34 Score=313.95 Aligned_cols=241 Identities=34% Similarity=0.507 Sum_probs=194.9
Q ss_pred CccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 006737 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (633)
Q Consensus 380 ~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vL 459 (633)
+|++|+|++.++++|.++||..|+++|.++|+.++.|+|++++||||+|||+||++|+++++...... ...++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~l 77 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR----KSGPPRIL 77 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc----CCCCceEE
Confidence 69999999999999999999999999999999999999999999999999999999999998764221 12246899
Q ss_pred EEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEE
Q 006737 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (633)
Q Consensus 460 ILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LV 539 (633)
||+||++||.|+++.+..+.... ++.+..++|+.....+...+. .+++|||+||++|++++... .+.+.++++||
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~~~~~---~~~~~~v~~lV 152 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFS-ENQDIVVATPGRLLQYIKEE---NFDCRAVETLI 152 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhc-CCCCEEEEChHHHHHHHHcC---CcCcccCCEEE
Confidence 99999999999999999998765 789999999998776655554 45799999999999999765 36688999999
Q ss_pred EecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh-hh-----ccccceEeeeccccccccCccceEEEeehh---
Q 006737 540 LDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE-LV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF--- 610 (633)
Q Consensus 540 IDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e-l~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~--- 610 (633)
|||||+|++++|...+..+...++...|+++||||++.. +. +...+..+.... ......++.|+++.+.
T Consensus 153 iDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~ 230 (434)
T PRK11192 153 LDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEP--SRRERKKIHQWYYRADDLE 230 (434)
T ss_pred EECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecC--CcccccCceEEEEEeCCHH
Confidence 999999999999999999999999899999999999865 21 122333332211 1223456777777553
Q ss_pred ----hHHHHh-hcCCceEEEEEcccc
Q 006737 611 ----VLVLSI-KIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ----~l~~~~-k~~~~~~LVFcnT~s 631 (633)
++.... .....++||||||+.
T Consensus 231 ~k~~~l~~l~~~~~~~~~lVF~~s~~ 256 (434)
T PRK11192 231 HKTALLCHLLKQPEVTRSIVFVRTRE 256 (434)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCChH
Confidence 222222 235579999999975
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-35 Score=316.99 Aligned_cols=246 Identities=36% Similarity=0.486 Sum_probs=205.8
Q ss_pred CccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCC--CeE
Q 006737 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP--PIY 457 (633)
Q Consensus 380 ~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~--~~~ 457 (633)
.|.+-.+.+.+..++...||..|||+|+.+||.+..|+|+++||+||||||.||++|++.+++............ .|+
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~ 154 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPR 154 (482)
T ss_pred cccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCc
Confidence 788888999999999999999999999999999999999999999999999999999999999886654443333 589
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+||++||||||.|++++++++.. ...++++..+|+.+...+...+.. +|||+|||||+|.++++.. .+.|..+++
T Consensus 155 ~lIlapTReL~~Qi~nea~k~~~-~s~~~~~~~ygg~~~~~q~~~~~~-gcdIlvaTpGrL~d~~e~g---~i~l~~~k~ 229 (482)
T KOG0335|consen 155 ALILAPTRELVDQIYNEARKFSY-LSGMKSVVVYGGTDLGAQLRFIKR-GCDILVATPGRLKDLIERG---KISLDNCKF 229 (482)
T ss_pred eEEEeCcHHHhhHHHHHHHhhcc-cccceeeeeeCCcchhhhhhhhcc-CccEEEecCchhhhhhhcc---eeehhhCcE
Confidence 99999999999999999998864 348899999999888877777665 4899999999999999887 588999999
Q ss_pred EEEecccccCC-cChHHHHHHHHHHCCC----CCcEEEEeccCChhhh------ccccceEeeeccccccccCccceEEE
Q 006737 538 LVLDEADHLLD-LGFRKDVENIVDCLPR----RRQSLLFSATMPKELV------LKREHTYIDTVGLGSVETPVKVSKYN 606 (633)
Q Consensus 538 LVIDEAD~Lld-~gf~~~l~~Il~~lpk----~~Q~IlfSATl~~el~------l~~~~~~i~~~~~~~~~~~~~V~q~~ 606 (633)
|||||||+|+| ++|.++|..|+..+.. .+|+++||||+|.++. +..+++++....+ -.+..++.|..
T Consensus 230 ~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv--g~~~~ni~q~i 307 (482)
T KOG0335|consen 230 LVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV--GSTSENITQKI 307 (482)
T ss_pred EEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee--ccccccceeEe
Confidence 99999999999 9999999999987754 7999999999999953 2223555544333 35677899988
Q ss_pred eehh-------hHHHHhhcC----Cc-----eEEEEEccccC
Q 006737 607 IYVF-------VLVLSIKIQ----AF-----YIICFVYTISM 632 (633)
Q Consensus 607 i~v~-------~l~~~~k~~----~~-----~~LVFcnT~s~ 632 (633)
.+|. ++.++.+.. .. .++|||.|+.+
T Consensus 308 ~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~ 349 (482)
T KOG0335|consen 308 LFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRG 349 (482)
T ss_pred eeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccch
Confidence 8875 333333222 22 79999999864
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.5e-33 Score=313.90 Aligned_cols=247 Identities=35% Similarity=0.522 Sum_probs=195.4
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
...|.+++|++.++++|.++||..|+++|.++|+.++.|+|+|+++|||||||+||++|+++.+....... ......++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~-~~~~~~~~ 164 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK-ERYMGEPR 164 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc-ccccCCce
Confidence 35689999999999999999999999999999999999999999999999999999999999987653211 11122468
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+|||+||++||.|+++.+..+.... ++.+..++||.....+...+....++|||+||++|+.++... ...++++++
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~---~~~l~~l~~ 240 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG---EVHLDMVEV 240 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CcccccCce
Confidence 9999999999999999999998765 788999999988877777777777899999999999988765 467899999
Q ss_pred EEEecccccCCcChHHHHHHHHHHCCC--CCcEEEEeccCChhhhc-----cccceEeeeccccccccCccceEEEeehh
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCLPR--RRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKVSKYNIYVF 610 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~lpk--~~Q~IlfSATl~~el~l-----~~~~~~i~~~~~~~~~~~~~V~q~~i~v~ 610 (633)
|||||||++++++|...+..|+..++. .+|+|+||||++..+.. ...+..+..... ......+.++++.+.
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~ 318 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPE--NVASDTVEQHVYAVA 318 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccC--cCCCCcccEEEEEec
Confidence 999999999999999999999998864 57999999999887431 122233222111 122344566555442
Q ss_pred ------hHHH-HhhcCCceEEEEEcccc
Q 006737 611 ------VLVL-SIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ------~l~~-~~k~~~~~~LVFcnT~s 631 (633)
.+.. .......++||||+|+.
T Consensus 319 ~~~k~~~l~~ll~~~~~~~~IVF~~s~~ 346 (475)
T PRK01297 319 GSDKYKLLYNLVTQNPWERVMVFANRKD 346 (475)
T ss_pred chhHHHHHHHHHHhcCCCeEEEEeCCHH
Confidence 1222 22333458999999974
No 26
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.9e-33 Score=299.66 Aligned_cols=248 Identities=31% Similarity=0.504 Sum_probs=206.3
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCC-CCCCCC
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST-TQLVPP 455 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~-~~~~~~ 455 (633)
+..+|++.+++..+++.+.+.||..|+|||..+||..+.++|+|..|.||||||++|++|++..|.....-.. .....+
T Consensus 243 plrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~g 322 (673)
T KOG0333|consen 243 PLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEG 322 (673)
T ss_pred cccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccC
Confidence 3567999999999999999999999999999999999999999999999999999999999988876543222 234568
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCe
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l 535 (633)
|+++|++|||+||+||..+..+++... ++++..++||.+..++--.+.. +|+|+|||||+|++.|.+. .+-++++
T Consensus 323 pyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fqls~-gceiviatPgrLid~Lenr---~lvl~qc 397 (673)
T KOG0333|consen 323 PYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQLSM-GCEIVIATPGRLIDSLENR---YLVLNQC 397 (673)
T ss_pred ceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhhhc-cceeeecCchHHHHHHHHH---HHHhccC
Confidence 999999999999999999999998766 7999999999998876555544 5899999999999999887 4679999
Q ss_pred eEEEEecccccCCcChHHHHHHHHHHCCCC-------------------------CcEEEEeccCChhhh-----ccccc
Q 006737 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRR-------------------------RQSLLFSATMPKELV-----LKREH 585 (633)
Q Consensus 536 ~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~-------------------------~Q~IlfSATl~~el~-----l~~~~ 585 (633)
.+||+||||+|+|+||.+++..|+..+|.. +|+++||||+|+.+. +...+
T Consensus 398 tyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~p 477 (673)
T KOG0333|consen 398 TYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRP 477 (673)
T ss_pred ceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCC
Confidence 999999999999999999999999999731 799999999999963 33444
Q ss_pred eEeeeccccccccCccceEEEeehh-------hHHHHhhcCCceEEEEEcccc
Q 006737 586 TYIDTVGLGSVETPVKVSKYNIYVF-------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 586 ~~i~~~~~~~~~~~~~V~q~~i~v~-------~l~~~~k~~~~~~LVFcnT~s 631 (633)
+++. ++. .......|+|..+.+. ++..+......++|||+|++.
T Consensus 478 v~vt-ig~-~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk 528 (673)
T KOG0333|consen 478 VVVT-IGS-AGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKK 528 (673)
T ss_pred eEEE-ecc-CCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechh
Confidence 5442 221 1234567888887764 444444556779999999974
No 27
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=323.34 Aligned_cols=248 Identities=32% Similarity=0.467 Sum_probs=207.7
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
++++|.++|++..++..|+++||..|++||.+|||+|+.|+|||.+|.||||||++|+||++.|+..+..- ....+|
T Consensus 363 pv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~---~~gdGP 439 (997)
T KOG0334|consen 363 PVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL---EEGDGP 439 (997)
T ss_pred ccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCCh---hhCCCc
Confidence 35679999999999999999999999999999999999999999999999999999999999887665432 223478
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
.+||++|||+||.||.+.+..+++. .++++++++|+.....++..++.+ +.|+|||||++++++....+...+|.++.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcC-CceEEeccchhhhhHhhcCCccccccccc
Confidence 9999999999999999999999987 599999999999999988888887 89999999999999977766666788888
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhcc-----ccceEeeeccccccccCccceEEEeehh-
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLK-----REHTYIDTVGLGSVETPVKVSKYNIYVF- 610 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l~-----~~~~~i~~~~~~~~~~~~~V~q~~i~v~- 610 (633)
+||+||||+|++++|.+++..|++.+++.+|+++||||+|..+... .-++- .+..........|+|.+.+|.
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pve--iiv~~~svV~k~V~q~v~V~~~ 595 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVE--IIVGGRSVVCKEVTQVVRVCAI 595 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCee--EEEccceeEeccceEEEEEecC
Confidence 9999999999999999999999999999999999999999985211 12222 222233445667889888875
Q ss_pred --------hHHHHhhcCCceEEEEEcccc
Q 006737 611 --------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 --------~l~~~~k~~~~~~LVFcnT~s 631 (633)
+.++-..-...++||||.+..
T Consensus 596 e~eKf~kL~eLl~e~~e~~~tiiFv~~qe 624 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYEDGKTIIFVDKQE 624 (997)
T ss_pred chHHHHHHHHHHHHHhhcCCEEEEEcCch
Confidence 111112333679999998754
No 28
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.8e-34 Score=299.38 Aligned_cols=250 Identities=30% Similarity=0.443 Sum_probs=207.1
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
+..+|.++.++..+++.|++.|+..|||||.+-||.+++|+|+|..|-||||||++|.||++...+......+-....+|
T Consensus 168 PIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP 247 (610)
T KOG0341|consen 168 PIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGP 247 (610)
T ss_pred chhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999988887766666667789
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHh-----cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccc
Q 006737 457 YVLILCPTRELASQIAAEAIALLK-----NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVR 531 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~-----~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~ 531 (633)
.+|||||+||||.|++..+..++. .++.++.+++.||.+...+......+ .||+|+|||+|.++|... ...
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~G-vHivVATPGRL~DmL~KK---~~s 323 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRG-VHIVVATPGRLMDMLAKK---IMS 323 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcC-eeEEEcCcchHHHHHHHh---hcc
Confidence 999999999999999999888874 33568889999999999888777665 899999999999999876 477
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhccccceEeeeccc--ccccc-Ccc-------
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGL--GSVET-PVK------- 601 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l~~~~~~i~~~~~--~~~~~-~~~------- 601 (633)
|.-++||++||||+|+++||...+..|+..+..++|+++||||+|..+.+....-.+.++.+ +.... .-+
T Consensus 324 Ld~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEy 403 (610)
T KOG0341|consen 324 LDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEY 403 (610)
T ss_pred HHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHH
Confidence 88899999999999999999999999999999999999999999999865543333322222 11111 112
Q ss_pred ceEEEeehhhHHHHhhcCCceEEEEEcccc
Q 006737 602 VSKYNIYVFVLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 602 V~q~~i~v~~l~~~~k~~~~~~LVFcnT~s 631 (633)
|+|..-.+.++.++.+. ..++||||..+.
T Consensus 404 VkqEaKiVylLeCLQKT-~PpVLIFaEkK~ 432 (610)
T KOG0341|consen 404 VKQEAKIVYLLECLQKT-SPPVLIFAEKKA 432 (610)
T ss_pred HHhhhhhhhHHHHhccC-CCceEEEecccc
Confidence 34444444456665554 458999998764
No 29
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-33 Score=291.77 Aligned_cols=240 Identities=32% Similarity=0.450 Sum_probs=197.1
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
-.|..+||+..+++++.+.||..|||||+++||.|+.++|++..|.||||||.||+||+++++.... ..+.++
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-------~~g~Ra 93 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLRA 93 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-------ccccce
Confidence 4599999999999999999999999999999999999999999999999999999999999986653 246789
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEE
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~L 538 (633)
||++|||+||.|..+.++.+++.. ++++.+++||....++...+..+ +|||||||++++++...- .+.|+.|+||
T Consensus 94 lilsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~n-pDii~ATpgr~~h~~vem---~l~l~sveyV 168 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNEN-PDIIIATPGRLLHLGVEM---TLTLSSVEYV 168 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccC-CCEEEecCceeeeeehhe---eccccceeee
Confidence 999999999999999999998866 78999999999998888777654 699999999998876544 4779999999
Q ss_pred EEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhccc-----cceEeeeccccccccCccceEEEeehh---
Q 006737 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKR-----EHTYIDTVGLGSVETPVKVSKYNIYVF--- 610 (633)
Q Consensus 539 VIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l~~-----~~~~i~~~~~~~~~~~~~V~q~~i~v~--- 610 (633)
|+||||.|+++||.+++..++..+|..+|+++||||+|..+.-+. ++..+. +.+ .......++..+..+.
T Consensus 169 VfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVR-ldv-etkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 169 VFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVR-LDV-ETKISELLKVRFFRVRKAE 246 (529)
T ss_pred eehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEE-eeh-hhhcchhhhhheeeeccHH
Confidence 999999999999999999999999999999999999999854221 222222 111 1223344555555443
Q ss_pred ---hHHHHhhcC--CceEEEEEccccC
Q 006737 611 ---VLVLSIKIQ--AFYIICFVYTISM 632 (633)
Q Consensus 611 ---~l~~~~k~~--~~~~LVFcnT~s~ 632 (633)
.++.+.... +.+++|||.|+.+
T Consensus 247 K~aaLl~il~~~~~~~~t~vf~~tk~h 273 (529)
T KOG0337|consen 247 KEAALLSILGGRIKDKQTIVFVATKHH 273 (529)
T ss_pred HHHHHHHHHhccccccceeEEecccch
Confidence 333333333 3489999999754
No 30
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.3e-31 Score=289.00 Aligned_cols=239 Identities=29% Similarity=0.440 Sum_probs=190.2
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
..+|+++++++.++++|.++||..|+++|.++|+.+++|+|++++||||||||++|++|+++.+.... .+.+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~--------~~~~ 98 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL--------NACQ 98 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC--------CCce
Confidence 46799999999999999999999999999999999999999999999999999999999998774221 2357
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+|||+||++||.|+.+.+..++... .+.+..+.|+.....+...+.. +++|+|+||++|.+++... ...++++++
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~---~~~l~~i~l 173 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKA-GVHMVVGTPGRVYDMIDKR---HLRVDDLKL 173 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcC-CCCEEEECcHHHHHHHHhC---CcccccccE
Confidence 9999999999999999998887644 6777788888877666655554 4799999999999988765 356899999
Q ss_pred EEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh--
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF-- 610 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~-- 610 (633)
|||||||++++.+|...+..++..++.+.|++++|||+++.+. ....+..+.... .......+.++++.+.
T Consensus 174 vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 251 (401)
T PTZ00424 174 FILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKK--DELTLEGIRQFYVAVEKE 251 (401)
T ss_pred EEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCC--CCcccCCceEEEEecChH
Confidence 9999999999999999999999999999999999999998742 112222221111 1223456677776553
Q ss_pred ------hHHHHhhcCCceEEEEEcccc
Q 006737 611 ------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ------~l~~~~k~~~~~~LVFcnT~s 631 (633)
+..........++||||+|+.
T Consensus 252 ~~~~~~l~~~~~~~~~~~~ivF~~t~~ 278 (401)
T PTZ00424 252 EWKFDTLCDLYETLTITQAIIYCNTRR 278 (401)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCcH
Confidence 111222334568999999975
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.7e-31 Score=278.70 Aligned_cols=238 Identities=31% Similarity=0.487 Sum_probs=203.9
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
.+|++|+|++.|++.++..||++|+.||+.||.++..|.|+++++++|+|||.+|++++++++..... ..+|
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~k--------e~qa 97 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVK--------ETQA 97 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchH--------HHHH
Confidence 47999999999999999999999999999999999999999999999999999999999998743322 2469
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEE
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~L 538 (633)
||++|||+||.|+.++...++... ++++..+.||.....+...++...++|+|+|||++.+++... .+....++++
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~---~l~~~~iKmf 173 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG---SLSTDGIKMF 173 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc---cccccceeEE
Confidence 999999999999998888887765 789999999998887777777777899999999999999776 4667889999
Q ss_pred EEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh---
Q 006737 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF--- 610 (633)
Q Consensus 539 VIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~--- 610 (633)
|+||||.|+..||.+++..|++.+|.+.|++++|||+|+++. +..++..+.....+ -+...++|+|+.+.
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~--ltl~gikq~~i~v~k~~ 251 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE--LTLEGIKQFYINVEKEE 251 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh--hhhhheeeeeeeccccc
Confidence 999999999999999999999999999999999999999963 44556655444332 45678999999764
Q ss_pred ---hHHHHhhcCCceEEEEEcccc
Q 006737 611 ---VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ---~l~~~~k~~~~~~LVFcnT~s 631 (633)
.+..+.. ...+++|||||+.
T Consensus 252 k~~~l~dl~~-~~~q~~if~nt~r 274 (397)
T KOG0327|consen 252 KLDTLCDLYR-RVTQAVIFCNTRR 274 (397)
T ss_pred cccHHHHHHH-hhhcceEEecchh
Confidence 3333333 6679999999975
No 32
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=2.3e-31 Score=289.65 Aligned_cols=238 Identities=29% Similarity=0.439 Sum_probs=201.4
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
..|+++-|...++..|+..+|..||+||.+|||+++.+-|+||+|..|+|||++|.+.+++.+... ...+++
T Consensus 25 ~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~--------~~~~q~ 96 (980)
T KOG4284|consen 25 PGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR--------SSHIQK 96 (980)
T ss_pred CCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc--------cCccee
Confidence 469999999999999999999999999999999999999999999999999999998888766433 234689
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEE
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~L 538 (633)
+||+||||+|.||...+..++..+.++++.+++||+....+..+++. |+|+|+|||+|..+++.+ .++.++|+++
T Consensus 97 ~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~--~rIvIGtPGRi~qL~el~---~~n~s~vrlf 171 (980)
T KOG4284|consen 97 VIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ--TRIVIGTPGRIAQLVELG---AMNMSHVRLF 171 (980)
T ss_pred EEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh--ceEEecCchHHHHHHHhc---CCCccceeEE
Confidence 99999999999999999999998899999999999999988888876 689999999999999887 5789999999
Q ss_pred EEecccccCC-cChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh--
Q 006737 539 VLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF-- 610 (633)
Q Consensus 539 VIDEAD~Lld-~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~-- 610 (633)
||||||.|++ ..|..+|..|++.+|+.+|+++||||.|..+. +++++.++..... ....-.|+|+++.+.
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~--d~~L~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD--DVQLFGIKQYVVAKCSP 249 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC--CceeechhheeeeccCC
Confidence 9999999998 55999999999999999999999999999863 4456665543221 334557888887643
Q ss_pred ------------hHH-HHhhcCCceEEEEEcccc
Q 006737 611 ------------VLV-LSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ------------~l~-~~~k~~~~~~LVFcnT~s 631 (633)
.|. ....+...++||||+..+
T Consensus 250 nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~s 283 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQIS 283 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhh
Confidence 111 122333448999999865
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.5e-30 Score=274.97 Aligned_cols=242 Identities=32% Similarity=0.462 Sum_probs=185.1
Q ss_pred CccccCCCHH----------HHHHHHHcCCCCCcHHHHHHHHHHhC---------CCcEEEEccCCCCchhhhHHHHHHH
Q 006737 380 RFDECGISPL----------TIKALTAAGYIQMTRVQEATLSACLE---------GKDAVVKAKTGTGKSIAFLLPAIEA 440 (633)
Q Consensus 380 ~F~el~L~~~----------Ll~~L~~~g~~~pt~iQ~~aIp~il~---------grDvLv~ApTGSGKTlaylLPiL~~ 440 (633)
.|+.+++++. +..+|.+++++...|+|..++|.++. .+|++|.||||||||+||.|||++.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 3566665554 44558999999999999999999853 5899999999999999999999998
Q ss_pred HHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCC----cEEEECch
Q 006737 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPC----QILVATPG 516 (633)
Q Consensus 441 l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~----dILIaTPg 516 (633)
+.... ...++||||+||++|+.|++..|..+.... ++.|+.+.|..+...+...+..... ||||+|||
T Consensus 208 L~~R~-------v~~LRavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPG 279 (620)
T KOG0350|consen 208 LSSRP-------VKRLRAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPG 279 (620)
T ss_pred HccCC-------ccceEEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCch
Confidence 86542 235799999999999999999999998765 8899999999999988888887766 99999999
Q ss_pred hhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCC---------------------------------
Q 006737 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP--------------------------------- 563 (633)
Q Consensus 517 rLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp--------------------------------- 563 (633)
||.++|.+.. .++|++++|+||||||+|++..|..++-.+...+.
T Consensus 280 RLVDHl~~~k--~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~ 357 (620)
T KOG0350|consen 280 RLVDHLNNTK--SFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL 357 (620)
T ss_pred HHHHhccCCC--CcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc
Confidence 9999998754 47899999999999999998776666554443331
Q ss_pred -CCCcEEEEeccCChhh----hcccc-ceEeeec--cccccccCccceEEEeehh-------hHHHHhhcCCceEEEEEc
Q 006737 564 -RRRQSLLFSATMPKEL----VLKRE-HTYIDTV--GLGSVETPVKVSKYNIYVF-------VLVLSIKIQAFYIICFVY 628 (633)
Q Consensus 564 -k~~Q~IlfSATl~~el----~l~~~-~~~i~~~--~~~~~~~~~~V~q~~i~v~-------~l~~~~k~~~~~~LVFcn 628 (633)
+..+.++||||++..- .+... +....+. .+.....|..+.+.++++. +..........++|||+|
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~ 437 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVN 437 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEec
Confidence 1135788899987651 11111 1111111 1344677888999888775 222333455569999999
Q ss_pred ccc
Q 006737 629 TIS 631 (633)
Q Consensus 629 T~s 631 (633)
|.+
T Consensus 438 S~~ 440 (620)
T KOG0350|consen 438 SVS 440 (620)
T ss_pred chH
Confidence 975
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=1.5e-29 Score=294.59 Aligned_cols=182 Identities=24% Similarity=0.282 Sum_probs=148.4
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEccc
Q 006737 385 GISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (633)
Q Consensus 385 ~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPT 464 (633)
.+++.+.++|.++||.+|+++|.++|+.++.|+|+++++|||||||+||+||+++.+.... ++++|||+||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~---------~~~aL~l~Pt 90 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP---------RATALYLAPT 90 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC---------CcEEEEEcCh
Confidence 3789999999999999999999999999999999999999999999999999999987531 3579999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHh-cccCcccccCCeeEEEEecc
Q 006737 465 RELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIE-NKSGLSVRLMGLKMLVLDEA 543 (633)
Q Consensus 465 ReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~-~~~~~~~~Ls~l~~LVIDEA 543 (633)
||||.|+++.++.+. ..++++..+.|++... +...+.. +++|||+||+.|...+. ....+...+++|++||||||
T Consensus 91 raLa~q~~~~l~~l~--~~~i~v~~~~Gdt~~~-~r~~i~~-~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 91 KALAADQLRAVRELT--LRGVRPATYDGDTPTE-ERRWARE-HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred HHHHHHHHHHHHHhc--cCCeEEEEEeCCCCHH-HHHHHhc-CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 999999999999986 3378888888887743 4444444 47999999999975432 22112234889999999999
Q ss_pred cccCCcChHHHHHHHHHH-------CCCCCcEEEEeccCChhhh
Q 006737 544 DHLLDLGFRKDVENIVDC-------LPRRRQSLLFSATMPKELV 580 (633)
Q Consensus 544 D~Lld~gf~~~l~~Il~~-------lpk~~Q~IlfSATl~~el~ 580 (633)
|.+.+. |..++..++.. ++.++|+|+||||+++...
T Consensus 167 h~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~ 209 (742)
T TIGR03817 167 HSYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA 209 (742)
T ss_pred hhccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH
Confidence 999763 66665555443 4567899999999998854
No 35
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=9e-30 Score=264.10 Aligned_cols=244 Identities=28% Similarity=0.383 Sum_probs=196.9
Q ss_pred CCCCcccccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCCchhhhHHHHHHHHHHhcCCC
Q 006737 371 EEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSS 448 (633)
Q Consensus 371 ~~~p~~~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~g--rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~ 448 (633)
+..|+.+.++|++|+|+|+++++|..|+|.+|+.||..++|.++.. +|+|.++.+|+|||.||.|.+|.++.-.
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---- 157 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---- 157 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc----
Confidence 6678999999999999999999999999999999999999999986 6999999999999999999999876433
Q ss_pred CCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCc
Q 006737 449 TTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL 528 (633)
Q Consensus 449 ~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~ 528 (633)
...|++|.|+||||||.|+.+++.+++++. ++.+....-+....... .+ ..+|+|+|||.+++++..-.
T Consensus 158 ----~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG~-~i---~eqIviGTPGtv~Dlm~klk-- 226 (477)
T KOG0332|consen 158 ----VVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRGN-KL---TEQIVIGTPGTVLDLMLKLK-- 226 (477)
T ss_pred ----ccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccCC-cc---hhheeeCCCccHHHHHHHHH--
Confidence 234679999999999999999999999877 78887777666333211 11 24899999999999997632
Q ss_pred ccccCCeeEEEEecccccCC-cChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccc
Q 006737 529 SVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKV 602 (633)
Q Consensus 529 ~~~Ls~l~~LVIDEAD~Lld-~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V 602 (633)
.+.+..++++|+||||.|++ .||.++-..|...+|+++|+|+||||+...+. +..++..+... ...-...+|
T Consensus 227 ~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk--~eel~L~~I 304 (477)
T KOG0332|consen 227 CIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILK--REELALDNI 304 (477)
T ss_pred hhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeee--hhhccccch
Confidence 57789999999999999986 57999999999999999999999999998853 12222221111 123356789
Q ss_pred eEEEeehh--------hHHHHhhcCCceEEEEEcccc
Q 006737 603 SKYNIYVF--------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 603 ~q~~i~v~--------~l~~~~k~~~~~~LVFcnT~s 631 (633)
+|+|+.|. +..++-.....++||||.|+.
T Consensus 305 kQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ 341 (477)
T KOG0332|consen 305 KQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKA 341 (477)
T ss_pred hhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehh
Confidence 99999986 222333455579999999974
No 36
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=3.1e-28 Score=239.92 Aligned_cols=188 Identities=44% Similarity=0.680 Sum_probs=166.8
Q ss_pred ccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 006737 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLI 460 (633)
Q Consensus 381 F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLI 460 (633)
|+++++++.+.+.|.++|+..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+..... ..++++||
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~vii 74 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALI 74 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEE
Confidence 678999999999999999999999999999999999999999999999999999999999877531 12468999
Q ss_pred EcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEE
Q 006737 461 LCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540 (633)
Q Consensus 461 LvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVI 540 (633)
++||++|+.|+...+..+.... ++.+..++|+.........+. ..++|+|+||+.|..++.+. ...+.++++|||
T Consensus 75 i~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~---~~~~~~l~~lIv 149 (203)
T cd00268 75 LAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLK-RGPHIVVATPGRLLDLLERG---KLDLSKVKYLVL 149 (203)
T ss_pred EcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhc-CCCCEEEEChHHHHHHHHcC---CCChhhCCEEEE
Confidence 9999999999999999987654 788899999888766555554 45899999999999998766 356789999999
Q ss_pred ecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 541 DEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 541 DEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
||||.+.+.++...+..++..+++.+|++++|||+++.+
T Consensus 150 DE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~ 188 (203)
T cd00268 150 DEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEV 188 (203)
T ss_pred eChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHH
Confidence 999999988899999999999999999999999999875
No 37
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.7e-29 Score=249.56 Aligned_cols=241 Identities=29% Similarity=0.446 Sum_probs=200.9
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
..-|.++-|+|++++++...||..|+.+|.+|||...-|.|++++|.+|.|||.+|.|..|+.+--. ...+-
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv--------~g~vs 112 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV--------DGQVS 112 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC--------CCeEE
Confidence 3558999999999999999999999999999999999999999999999999999999998876322 22367
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+|++|.|||||.||.++...+.++++.+++.+++||...+.+.+.+++ .++|+|+|||+++.+..+. .+.|+++++
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~-~PhivVgTPGrilALvr~k---~l~lk~vkh 188 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN-CPHIVVGTPGRILALVRNR---SLNLKNVKH 188 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC-CCeEEEcCcHHHHHHHHhc---cCchhhcce
Confidence 999999999999999999999999999999999999999998888887 6799999999999999877 588999999
Q ss_pred EEEecccccCC-cChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh-
Q 006737 538 LVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF- 610 (633)
Q Consensus 538 LVIDEAD~Lld-~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~- 610 (633)
+||||+|.|++ .+.+..+..|+...|.+.|+++||||+++++. +..++.-+-. .....-+.-.+.|+|+.+.
T Consensus 189 FvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~v-DdE~KLtLHGLqQ~YvkLke 267 (387)
T KOG0329|consen 189 FVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFV-DDEAKLTLHGLQQYYVKLKE 267 (387)
T ss_pred eehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhc-cchhhhhhhhHHHHHHhhhh
Confidence 99999999985 45899999999999999999999999999963 2333222111 1112234456778887653
Q ss_pred ------hHHHHhhcCCceEEEEEcccc
Q 006737 611 ------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ------~l~~~~k~~~~~~LVFcnT~s 631 (633)
+...+......+++||+.|+.
T Consensus 268 ~eKNrkl~dLLd~LeFNQVvIFvKsv~ 294 (387)
T KOG0329|consen 268 NEKNRKLNDLLDVLEFNQVVIFVKSVQ 294 (387)
T ss_pred hhhhhhhhhhhhhhhhcceeEeeehhh
Confidence 333344555679999998864
No 38
>PRK02362 ski2-like helicase; Provisional
Probab=99.95 E-value=2.3e-27 Score=277.30 Aligned_cols=179 Identities=22% Similarity=0.239 Sum_probs=153.0
Q ss_pred CccccCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 380 ~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~-il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
.|++++|++.++++|.+.||.+|+|+|.+|++. ++.|+|++++||||||||++|.+|+++++... .++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~-----------~ka 70 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG-----------GKA 70 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC-----------CcE
Confidence 588999999999999999999999999999998 78899999999999999999999999988532 369
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEE
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~L 538 (633)
|||+||++||.|+++.+..+.. . ++++..++|+...... .+ ..++|+||||+++..++.+.. ..+.++++|
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~--~l--~~~~IiV~Tpek~~~llr~~~---~~l~~v~lv 141 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRDE--WL--GDNDIIVATSEKVDSLLRNGA---PWLDDITCV 141 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc--cc--CCCCEEEECHHHHHHHHhcCh---hhhhhcCEE
Confidence 9999999999999999997643 2 7889999998754321 22 236999999999998887642 347899999
Q ss_pred EEecccccCCcChHHHHHHHHHHC---CCCCcEEEEeccCChh
Q 006737 539 VLDEADHLLDLGFRKDVENIVDCL---PRRRQSLLFSATMPKE 578 (633)
Q Consensus 539 VIDEAD~Lld~gf~~~l~~Il~~l---pk~~Q~IlfSATl~~e 578 (633)
||||||.+.+.+++..++.++..+ +.+.|+|+||||+++.
T Consensus 142 ViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~ 184 (737)
T PRK02362 142 VVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA 184 (737)
T ss_pred EEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH
Confidence 999999999888888888776544 5689999999999874
No 39
>PRK00254 ski2-like helicase; Provisional
Probab=99.95 E-value=3.6e-27 Score=275.04 Aligned_cols=180 Identities=23% Similarity=0.267 Sum_probs=157.2
Q ss_pred CccccCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 380 ~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~-il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
+|+++++++.+.+.|.+.||..|+|+|.++++. ++.|+|+++++|||||||++|.+|+++++... +.++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~ 71 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKA 71 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeE
Confidence 578999999999999999999999999999986 88999999999999999999999999987643 2369
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEE
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~L 538 (633)
|||+|+++||.|+++.+..+.. . ++++..++|+...... .+ ..++|+|+||+++..++... ...+++|++|
T Consensus 72 l~l~P~~aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~--~~--~~~~IiV~Tpe~~~~ll~~~---~~~l~~l~lv 142 (720)
T PRK00254 72 VYLVPLKALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDE--WL--GKYDIIIATAEKFDSLLRHG---SSWIKDVKLV 142 (720)
T ss_pred EEEeChHHHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchh--hh--ccCCEEEEcHHHHHHHHhCC---chhhhcCCEE
Confidence 9999999999999999987643 2 7899999998764422 22 34799999999998888654 2457899999
Q ss_pred EEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 539 VIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
||||+|.+.+.++...+..++..+....|+|++|||+++.
T Consensus 143 ViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~ 182 (720)
T PRK00254 143 VADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNA 182 (720)
T ss_pred EEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH
Confidence 9999999999899999999999998899999999999875
No 40
>PRK01172 ski2-like helicase; Provisional
Probab=99.93 E-value=3.9e-25 Score=256.34 Aligned_cols=179 Identities=17% Similarity=0.227 Sum_probs=150.3
Q ss_pred CccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 006737 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (633)
Q Consensus 380 ~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vL 459 (633)
.|++++|++.+++.+.+.+|. ++++|.++++.++.++|++++||||||||+++.++++..+... .++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-----------~k~v 69 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-----------LKSI 69 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-----------CcEE
Confidence 588999999999999999987 9999999999999999999999999999999999999887542 2599
Q ss_pred EEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEE
Q 006737 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (633)
Q Consensus 460 ILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LV 539 (633)
||+|+++||.|+++.+.++.. .++.+..++|+...... .+ ..++|+|+||+++..++.+. ...+.++++||
T Consensus 70 ~i~P~raLa~q~~~~~~~l~~--~g~~v~~~~G~~~~~~~--~~--~~~dIiv~Tpek~~~l~~~~---~~~l~~v~lvV 140 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLRS--LGMRVKISIGDYDDPPD--FI--KRYDVVILTSEKADSLIHHD---PYIINDVGLIV 140 (674)
T ss_pred EEechHHHHHHHHHHHHHHhh--cCCeEEEEeCCCCCChh--hh--ccCCEEEECHHHHHHHHhCC---hhHHhhcCEEE
Confidence 999999999999999987643 27888888887654322 22 23699999999998888664 24578999999
Q ss_pred EecccccCCcChHHHHHHHHH---HCCCCCcEEEEeccCChhh
Q 006737 540 LDEADHLLDLGFRKDVENIVD---CLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 540 IDEAD~Lld~gf~~~l~~Il~---~lpk~~Q~IlfSATl~~el 579 (633)
|||||++.+.++...+..++. .++.+.|+|+||||+++..
T Consensus 141 iDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~ 183 (674)
T PRK01172 141 ADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNAN 183 (674)
T ss_pred EecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCHH
Confidence 999999998877777776654 4566899999999998753
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.93 E-value=3.7e-25 Score=262.33 Aligned_cols=188 Identities=21% Similarity=0.292 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccH
Q 006737 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (633)
Q Consensus 386 L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTR 465 (633)
+++.+.+.+. .+|..|||+|.++|+.++.|+|++++||||||||+||++|+++.+....... ....++++|||+||+
T Consensus 18 l~~~v~~~~~-~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~--~~~~~~~~LyIsPtr 94 (876)
T PRK13767 18 LRPYVREWFK-EKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG--ELEDKVYCLYVSPLR 94 (876)
T ss_pred cCHHHHHHHH-HccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc--CCCCCeEEEEEcCHH
Confidence 4566666554 4799999999999999999999999999999999999999999987643211 112357899999999
Q ss_pred HHHHHHHHHHHHH-------H----hcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCC
Q 006737 466 ELASQIAAEAIAL-------L----KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (633)
Q Consensus 466 eLa~Qi~~~l~~l-------~----~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~ 534 (633)
+||.|+++.+... + ...+++.+.+.+|++........+. .+++|||+||++|..++.... ....+.+
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~-~~p~IlVtTPE~L~~ll~~~~-~~~~l~~ 172 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK-KPPHILITTPESLAILLNSPK-FREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh-CCCCEEEecHHHHHHHhcChh-HHHHHhc
Confidence 9999998876532 2 1223678899999988665544443 457999999999988875432 1235789
Q ss_pred eeEEEEecccccCCcChHHHHH----HHHHHCCCCCcEEEEeccCChh
Q 006737 535 LKMLVLDEADHLLDLGFRKDVE----NIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 535 l~~LVIDEAD~Lld~gf~~~l~----~Il~~lpk~~Q~IlfSATl~~e 578 (633)
+++|||||||.+++..+..++. ++....+...|+|+||||+++.
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~ 220 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL 220 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH
Confidence 9999999999999766555444 4444455678999999999874
No 42
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=3e-25 Score=211.25 Aligned_cols=164 Identities=37% Similarity=0.599 Sum_probs=138.9
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcC
Q 006737 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482 (633)
Q Consensus 403 t~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~ 482 (633)
||+|.++++.+.+|+|++++||||+|||++|++|+++.+..... .++||++|+++|+.|+++.+..++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~---------~~~lii~P~~~l~~q~~~~~~~~~~~- 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKD---------ARVLIIVPTRALAEQQFERLRKFFSN- 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSS---------SEEEEEESSHHHHHHHHHHHHHHTTT-
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCC---------ceEEEEeecccccccccccccccccc-
Confidence 79999999999999999999999999999999999998876521 26999999999999999999999876
Q ss_pred CCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHC
Q 006737 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562 (633)
Q Consensus 483 ~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~l 562 (633)
.++++..++++............++++|+|+||++|.+++... ...+.++.+|||||+|.+..+.+...+..|+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~---~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~ 147 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNG---KINISRLSLIVIDEAHHLSDETFRAMLKSILRRL 147 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT---SSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHS
T ss_pred cccccccccccccccccccccccccccccccCcchhhcccccc---ccccccceeeccCcccccccccHHHHHHHHHHHh
Confidence 4788999999887553333333456899999999999999874 2356679999999999999888899999999887
Q ss_pred CC--CCcEEEEeccCChhh
Q 006737 563 PR--RRQSLLFSATMPKEL 579 (633)
Q Consensus 563 pk--~~Q~IlfSATl~~el 579 (633)
.. +.|+|++|||+++.+
T Consensus 148 ~~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 148 KRFKNIQIILLSATLPSNV 166 (169)
T ss_dssp HTTTTSEEEEEESSSTHHH
T ss_pred cCCCCCcEEEEeeCCChhH
Confidence 43 599999999999544
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.93 E-value=3.8e-25 Score=254.59 Aligned_cols=186 Identities=23% Similarity=0.312 Sum_probs=156.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccH
Q 006737 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (633)
Q Consensus 386 L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTR 465 (633)
|++.+.+.+... |..||+.|.+|||.|..|+|+|++||||||||+|..||+++.+.+.. ......++.||||+|.|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYISPLK 83 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeCcHH
Confidence 678888888887 99999999999999999999999999999999999999999999874 11223468999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccc
Q 006737 466 ELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (633)
Q Consensus 466 eLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~ 545 (633)
+|.+++...+...+... |+.+.+-+|++..... +....+++||||+||+.|.-+|... .....|.++++|||||+|.
T Consensus 84 ALn~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er-~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 84 ALNNDIRRRLEEPLREL-GIEVAVRHGDTPQSEK-QKMLKNPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred HHHHHHHHHHHHHHHHc-CCccceecCCCChHHh-hhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhh
Confidence 99999999999998866 8999999999987754 4444567899999999998888654 2335699999999999999
Q ss_pred cCCcChH----HHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 546 LLDLGFR----KDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 546 Lld~gf~----~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+.+...+ -.++++....+ +.|.|++|||+.+..
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~ 197 (814)
T COG1201 161 LAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPPE 197 (814)
T ss_pred hhccccchhhhhhHHHHHhhCc-ccEEEeehhccCCHH
Confidence 9865433 34455556666 899999999998773
No 44
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=1.2e-24 Score=262.52 Aligned_cols=215 Identities=23% Similarity=0.191 Sum_probs=158.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.|+ .|+++|..++|.++.|+|++++||||+|||+ |.++++..+... +.++|||+|||+||.|+++.++
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~~----------g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAKK----------GKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeccHHHHHHHHHHHH
Confidence 466 8999999999999999999999999999996 556665544321 3579999999999999999999
Q ss_pred HHHhcCCCceEEEEECCccc-----hHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCC---
Q 006737 477 ALLKNHDGIGVLTLVGGTRF-----KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD--- 548 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~-----~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld--- 548 (633)
.++... ++.+.+++|+... ......+..+.++|+|+||++|.+++.. +.+..+++|||||||+|++
T Consensus 145 ~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 145 KFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred HHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccccCEEEEEChHHhhhccc
Confidence 998755 6777777776542 2233445556689999999999998762 4456799999999999996
Q ss_pred --------cChH-HHHHHHHHHCCC------------------------CCcEEEEeccCChh-hh--ccccceEeeecc
Q 006737 549 --------LGFR-KDVENIVDCLPR------------------------RRQSLLFSATMPKE-LV--LKREHTYIDTVG 592 (633)
Q Consensus 549 --------~gf~-~~l~~Il~~lpk------------------------~~Q~IlfSATl~~e-l~--l~~~~~~i~~~~ 592 (633)
.||. ..+..++..++. ..|+++||||+++. +. +..+...+....
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~ 298 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGS 298 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecC
Confidence 5774 678888887765 68999999999875 32 223332222211
Q ss_pred ccccccCccceEEEeehh----hHHHHhhcCCceEEEEEcccc
Q 006737 593 LGSVETPVKVSKYNIYVF----VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 593 ~~~~~~~~~V~q~~i~v~----~l~~~~k~~~~~~LVFcnT~s 631 (633)
......+|.|.|+.+. .+..+.+.....+||||||..
T Consensus 299 --~~~~~rnI~~~yi~~~~k~~~L~~ll~~l~~~~LIFv~t~~ 339 (1176)
T PRK09401 299 --PVFYLRNIVDSYIVDEDSVEKLVELVKRLGDGGLIFVPSDK 339 (1176)
T ss_pred --cccccCCceEEEEEcccHHHHHHHHHHhcCCCEEEEEeccc
Confidence 1234567899888762 222233333468999999864
No 45
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.3e-25 Score=245.04 Aligned_cols=241 Identities=24% Similarity=0.309 Sum_probs=181.5
Q ss_pred cCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcc
Q 006737 384 CGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (633)
Q Consensus 384 l~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvP 463 (633)
+.+++.+++.+...+|..|+|+|.+|||.++.++|+++|||||||||++|++|+++++..... .....+.+++||.|
T Consensus 141 ~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~---~~~~~gl~a~Il~p 217 (593)
T KOG0344|consen 141 YSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ---EKHKVGLRALILSP 217 (593)
T ss_pred hhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc---ccCccceEEEEecc
Confidence 678999999999999999999999999999999999999999999999999999999987653 23345789999999
Q ss_pred cHHHHHHHHHHHHHHH--hcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEe
Q 006737 464 TRELASQIAAEAIALL--KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLD 541 (633)
Q Consensus 464 TReLa~Qi~~~l~~l~--~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVID 541 (633)
||+||.|++.++.++. ... .+.+..+............+....++|+|.||-+|..++.... ..++++.|.++|+|
T Consensus 218 treLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~-~~idl~~V~~lV~d 295 (593)
T KOG0344|consen 218 TRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGK-LNIDLSKVEWLVVD 295 (593)
T ss_pred hHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCC-ccchhheeeeEeec
Confidence 9999999999999997 222 3333333333222222222223347999999999999997652 23679999999999
Q ss_pred cccccCCc-ChHHHHHHHHHHCC-CCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh----
Q 006737 542 EADHLLDL-GFRKDVENIVDCLP-RRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF---- 610 (633)
Q Consensus 542 EAD~Lld~-gf~~~l~~Il~~lp-k~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~---- 610 (633)
|||.+++. .|..++..|+..+. ++..+-+||||++..+. .+.+...+ +++.. ......|.|..++|-
T Consensus 296 EaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~v-ivg~~-~sa~~~V~QelvF~gse~~ 373 (593)
T KOG0344|consen 296 EADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRV-IVGLR-NSANETVDQELVFCGSEKG 373 (593)
T ss_pred hHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeE-EEecc-hhHhhhhhhhheeeecchh
Confidence 99999998 89999999998654 57888999999999853 22222222 22221 233457888888774
Q ss_pred ----hHHHHhhcCCceEEEEEcccc
Q 006737 611 ----VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ----~l~~~~k~~~~~~LVFcnT~s 631 (633)
+..........++|||+.|+.
T Consensus 374 K~lA~rq~v~~g~~PP~lIfVQs~e 398 (593)
T KOG0344|consen 374 KLLALRQLVASGFKPPVLIFVQSKE 398 (593)
T ss_pred HHHHHHHHHhccCCCCeEEEEecHH
Confidence 222233445679999998864
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.93 E-value=6.9e-25 Score=257.27 Aligned_cols=180 Identities=20% Similarity=0.239 Sum_probs=137.3
Q ss_pred ccc--cCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 381 FDE--CGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 381 F~e--l~L~~~Ll~~L~~-~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
|.. ++....+...+.. +||..|+|+|.++|++++.|+|+|+++|||+|||+||+||+|.. . ..
T Consensus 437 W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---~-----------Gi 502 (1195)
T PLN03137 437 WSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---P-----------GI 502 (1195)
T ss_pred ccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---C-----------Cc
Confidence 553 4556667666665 69999999999999999999999999999999999999999842 1 24
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhc-----CCCcEEEECchhhHH--HHhcccCccc
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES-----DPCQILVATPGRLLD--HIENKSGLSV 530 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~-----~~~dILIaTPgrLl~--lL~~~~~~~~ 530 (633)
+|||+|+++|+.+++..+... ++.+..+.++.....+...+.. +.++|||+||++|.. .+.+......
T Consensus 503 TLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~ 577 (1195)
T PLN03137 503 TLVISPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLN 577 (1195)
T ss_pred EEEEeCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhh
Confidence 999999999998766555443 7888899998877665544332 568999999999852 1211100001
Q ss_pred ccCCeeEEEEecccccCCcC--hHHHHHHH--HHHCCCCCcEEEEeccCChhh
Q 006737 531 RLMGLKMLVLDEADHLLDLG--FRKDVENI--VDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 531 ~Ls~l~~LVIDEAD~Lld~g--f~~~l~~I--l~~lpk~~Q~IlfSATl~~el 579 (633)
....|.+|||||||++++|| |+..+..+ +....+.+|+++||||++..+
T Consensus 578 ~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V 630 (1195)
T PLN03137 578 SRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASV 630 (1195)
T ss_pred hccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHH
Confidence 23458899999999999998 88887764 333445789999999999874
No 47
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.93 E-value=1.4e-24 Score=251.17 Aligned_cols=216 Identities=19% Similarity=0.117 Sum_probs=151.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCC-cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEE-EcccHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLI-LCPTRELASQIAAE 474 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~gr-DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLI-LvPTReLa~Qi~~~ 474 (633)
.||. |||+|.++||.++.|+ ++++++|||||||.+|.++++.. ... ...+++|| ++|||+||.|+++.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--------~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--------AKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--------ccccceEEEeCchHHHHHHHHHH
Confidence 5888 9999999999999998 67788999999999776555522 111 12244555 77999999999999
Q ss_pred HHHHHhcCC----------------------CceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccC-----
Q 006737 475 AIALLKNHD----------------------GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG----- 527 (633)
Q Consensus 475 l~~l~~~~~----------------------~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~----- 527 (633)
+.++.+.+. .+++.+++||.....+...+.. +++|||+|+ +++.+..-
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~-~p~IIVgT~----D~i~sr~L~~gYg 156 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH-RPAVIVGTV----DMIGSRLLFSGYG 156 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC-CCcEEEECH----HHHcCCccccccc
Confidence 999987552 4889999999998888877765 479999995 55544310
Q ss_pred cc-----c---ccCCeeEEEEecccccCCcChHHHHHHHHHHC--CCC---CcEEEEeccCChhhh-----ccccceEee
Q 006737 528 LS-----V---RLMGLKMLVLDEADHLLDLGFRKDVENIVDCL--PRR---RQSLLFSATMPKELV-----LKREHTYID 589 (633)
Q Consensus 528 ~~-----~---~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~l--pk~---~Q~IlfSATl~~el~-----l~~~~~~i~ 589 (633)
.. + .|+++++||||||| ++++|...+..|+..+ ++. +|+++||||++.++. +..++..+.
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~ 234 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHP 234 (844)
T ss_pred cccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceee
Confidence 00 0 26889999999999 6789999999999975 442 799999999997632 122222222
Q ss_pred eccccccccCccceEEEeehh---------hHHHHhhcCCceEEEEEcccc
Q 006737 590 TVGLGSVETPVKVSKYNIYVF---------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 590 ~~~~~~~~~~~~V~q~~i~v~---------~l~~~~k~~~~~~LVFcnT~s 631 (633)
... ...+..++.|++.... .+.........++||||||+.
T Consensus 235 V~~--~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~ 283 (844)
T TIGR02621 235 VLK--KRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVK 283 (844)
T ss_pred ccc--ccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHH
Confidence 111 1123335555433211 111122345578999999975
No 48
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1.4e-24 Score=241.73 Aligned_cols=162 Identities=23% Similarity=0.320 Sum_probs=126.8
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 396 ~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.+||..|+|+|.++|+.+++|+|+++++|||+|||+||++|++.. +..+|||+||++|+.|++..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQVLQL 71 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999999742 124899999999999998888
Q ss_pred HHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccc-ccCCeeEEEEecccccCCcC-
Q 006737 476 IALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSV-RLMGLKMLVLDEADHLLDLG- 550 (633)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~-~Ls~l~~LVIDEAD~Lld~g- 550 (633)
..+ ++.+..+.++....... ..+..+.++|||+||+++........ .+ .+.++.+|||||||++++||
T Consensus 72 ~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~--~l~~~~~i~~iViDEaH~i~~~g~ 144 (470)
T TIGR00614 72 KAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQ--TLEERKGITLIAVDEAHCISQWGH 144 (470)
T ss_pred HHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHH--HHHhcCCcCEEEEeCCcccCcccc
Confidence 754 67777777776544222 23455668999999999754221000 01 46789999999999999987
Q ss_pred -hHHHHHHH---HHHCCCCCcEEEEeccCChhh
Q 006737 551 -FRKDVENI---VDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 551 -f~~~l~~I---l~~lpk~~Q~IlfSATl~~el 579 (633)
|+..+..| ...+ ++.|+++||||+++.+
T Consensus 145 ~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~ 176 (470)
T TIGR00614 145 DFRPDYKALGSLKQKF-PNVPIMALTATASPSV 176 (470)
T ss_pred ccHHHHHHHHHHHHHc-CCCceEEEecCCCHHH
Confidence 67776654 3344 5789999999999874
No 49
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=1.6e-23 Score=257.87 Aligned_cols=225 Identities=20% Similarity=0.189 Sum_probs=162.2
Q ss_pred HHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHH
Q 006737 388 PLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE 466 (633)
Q Consensus 388 ~~Ll~~L~~-~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTRe 466 (633)
..+.+.+.+ +|| .|+++|+.+|+.++.|+|++++||||+|||++++++++.... .+.++|||+||++
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-----------~g~~aLVl~PTre 133 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-----------KGKKCYIILPTTL 133 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECHHH
Confidence 345555665 799 699999999999999999999999999999977766654321 1347999999999
Q ss_pred HHHHHHHHHHHHHhcCC-CceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEec
Q 006737 467 LASQIAAEAIALLKNHD-GIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542 (633)
Q Consensus 467 La~Qi~~~l~~l~~~~~-~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDE 542 (633)
|+.|+++.++.++.... ++.+..++|+.+...+. ..+..+.++|||+||++|.+++... . ..++++|||||
T Consensus 134 La~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~-~~~i~~iVVDE 208 (1638)
T PRK14701 134 LVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----K-HLKFDFIFVDD 208 (1638)
T ss_pred HHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----h-hCCCCEEEEEC
Confidence 99999999999886542 56778888998766543 3455666899999999998876542 1 26799999999
Q ss_pred ccccCC-----------cChHHHHHH----HHH----------------------HCCCCCc-EEEEeccCChh---hhc
Q 006737 543 ADHLLD-----------LGFRKDVEN----IVD----------------------CLPRRRQ-SLLFSATMPKE---LVL 581 (633)
Q Consensus 543 AD~Lld-----------~gf~~~l~~----Il~----------------------~lpk~~Q-~IlfSATl~~e---l~l 581 (633)
||+|++ .||.+++.. |+. .+++..| ++++|||++.. +.+
T Consensus 209 AD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l 288 (1638)
T PRK14701 209 VDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKL 288 (1638)
T ss_pred ceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHH
Confidence 999987 478887764 332 2345566 57799999963 233
Q ss_pred cccceEeeeccccccccCccceEEEeehh-----hHHHHhhcCCceEEEEEcccc
Q 006737 582 KREHTYIDTVGLGSVETPVKVSKYNIYVF-----VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~~~V~q~~i~v~-----~l~~~~k~~~~~~LVFcnT~s 631 (633)
..+...+.. +. ......++.|.|+.+. .+..+.+.....+||||||..
T Consensus 289 ~~~~l~f~v-~~-~~~~lr~i~~~yi~~~~~~k~~L~~ll~~~g~~gIVF~~t~~ 341 (1638)
T PRK14701 289 YRELLGFEV-GS-GRSALRNIVDVYLNPEKIIKEHVRELLKKLGKGGLIFVPIDE 341 (1638)
T ss_pred hhcCeEEEe-cC-CCCCCCCcEEEEEECCHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 333333322 11 1234567888888553 222223333568999999864
No 50
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.91 E-value=9.9e-24 Score=241.72 Aligned_cols=171 Identities=22% Similarity=0.311 Sum_probs=131.0
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEccc
Q 006737 386 ISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (633)
Q Consensus 386 L~~~Ll~~L~~-~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPT 464 (633)
+.......|.+ +||..|+|+|.++|+.+++|+|+++++|||+|||+||++|++.. . ..+|||+|+
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~-----------g~tlVisPl 74 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---D-----------GLTLVVSPL 74 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---C-----------CCEEEEecH
Confidence 34444455554 69999999999999999999999999999999999999999842 1 148999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEe
Q 006737 465 RELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLD 541 (633)
Q Consensus 465 ReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVID 541 (633)
++|+.|++..+..+ ++.+.++.++....... ..+..+..+|+|+||++|....-.. .+...++.+||||
T Consensus 75 ~sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~---~l~~~~l~~iVID 146 (607)
T PRK11057 75 ISLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE---HLAHWNPALLAVD 146 (607)
T ss_pred HHHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH---HHhhCCCCEEEEe
Confidence 99999999888765 67777777766544332 2344566899999999987321111 1334578999999
Q ss_pred cccccCCcC--hHHHHHHH---HHHCCCCCcEEEEeccCChhh
Q 006737 542 EADHLLDLG--FRKDVENI---VDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 542 EAD~Lld~g--f~~~l~~I---l~~lpk~~Q~IlfSATl~~el 579 (633)
|||++++|| |...+..| ...+ ++.|+++||||+++.+
T Consensus 147 EaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~ 188 (607)
T PRK11057 147 EAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTT 188 (607)
T ss_pred CccccccccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhH
Confidence 999999987 67666544 3344 4789999999999874
No 51
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.91 E-value=8.7e-24 Score=241.68 Aligned_cols=164 Identities=24% Similarity=0.359 Sum_probs=130.3
Q ss_pred HHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH
Q 006737 393 ALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (633)
Q Consensus 393 ~L~~-~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi 471 (633)
.|.+ +||..|+++|.++|+.+++|+|+++++|||+|||+||++|++.. . ..+|||+|+++|+.|+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---~-----------g~~lVisPl~sL~~dq 69 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---K-----------GLTVVISPLISLMKDQ 69 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---C-----------CcEEEEcCCHHHHHHH
Confidence 3444 79999999999999999999999999999999999999999732 1 1489999999999999
Q ss_pred HHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCC
Q 006737 472 AAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548 (633)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld 548 (633)
+..++.+ ++.+..+.++....... ..+..+.++|+++||++|....... .....++.+|||||||++++
T Consensus 70 ~~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~---~l~~~~l~~iViDEaH~i~~ 141 (591)
T TIGR01389 70 VDQLRAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN---MLQRIPIALVAVDEAHCVSQ 141 (591)
T ss_pred HHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH---HHhcCCCCEEEEeCCccccc
Confidence 9888775 67788888877655433 3345567899999999986432222 23456899999999999999
Q ss_pred cC--hHHHHHHHH---HHCCCCCcEEEEeccCChhh
Q 006737 549 LG--FRKDVENIV---DCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 549 ~g--f~~~l~~Il---~~lpk~~Q~IlfSATl~~el 579 (633)
|| |+..+..+. ..++ ..++++||||.+..+
T Consensus 142 ~g~~frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~ 176 (591)
T TIGR01389 142 WGHDFRPEYQRLGSLAERFP-QVPRIALTATADAET 176 (591)
T ss_pred ccCccHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHH
Confidence 87 777776654 3444 456999999999885
No 52
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.91 E-value=2.5e-23 Score=251.25 Aligned_cols=222 Identities=23% Similarity=0.246 Sum_probs=155.8
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHH
Q 006737 389 LTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (633)
Q Consensus 389 ~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa 468 (633)
.+.+.+.+.....|+++|+.+++.++.|+|++++||||+|||+ |.+|++..+... ++++|||+|||+||
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~----------g~~vLIL~PTreLa 134 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK----------GKRCYIILPTTLLV 134 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeCHHHHH
Confidence 4445555544558999999999999999999999999999997 777777665432 35799999999999
Q ss_pred HHHHHHHHHHHhcCCCce---EEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEec
Q 006737 469 SQIAAEAIALLKNHDGIG---VLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542 (633)
Q Consensus 469 ~Qi~~~l~~l~~~~~~i~---v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDE 542 (633)
.|+++.+..++... ++. +.+++|+.+...+ ...+..++++|||+||++|.+++... .. .+++|||||
T Consensus 135 ~Qi~~~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l-----~~-~~~~iVvDE 207 (1171)
T TIGR01054 135 IQVAEKISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL-----GP-KFDFIFVDD 207 (1171)
T ss_pred HHHHHHHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh-----cC-CCCEEEEeC
Confidence 99999999998754 343 3457788776543 23455566899999999999887542 12 899999999
Q ss_pred ccccCC-----------cChHHH-HHHHH----------------------HHCCCCCc--EEEEecc-CChhhh--ccc
Q 006737 543 ADHLLD-----------LGFRKD-VENIV----------------------DCLPRRRQ--SLLFSAT-MPKELV--LKR 583 (633)
Q Consensus 543 AD~Lld-----------~gf~~~-l~~Il----------------------~~lpk~~Q--~IlfSAT-l~~el~--l~~ 583 (633)
||+|++ .||..+ +..++ ..+++.+| +++|||| .|..+. +..
T Consensus 208 aD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r 287 (1171)
T TIGR01054 208 VDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFR 287 (1171)
T ss_pred hHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcc
Confidence 999998 577664 44443 23455566 5678999 555432 223
Q ss_pred cceEeeeccccccccCccceEEEeehhh----HHHHhhcCCceEEEEEccc
Q 006737 584 EHTYIDTVGLGSVETPVKVSKYNIYVFV----LVLSIKIQAFYIICFVYTI 630 (633)
Q Consensus 584 ~~~~i~~~~~~~~~~~~~V~q~~i~v~~----l~~~~k~~~~~~LVFcnT~ 630 (633)
+...+.. + .......+|.|.|+.+.. +..+.+.....+||||||+
T Consensus 288 ~ll~~~v-~-~~~~~~r~I~~~~~~~~~~~~~L~~ll~~l~~~~IVFv~t~ 336 (1171)
T TIGR01054 288 ELLGFEV-G-GGSDTLRNVVDVYVEDEDLKETLLEIVKKLGTGGIVYVSID 336 (1171)
T ss_pred cccceEe-c-CccccccceEEEEEecccHHHHHHHHHHHcCCCEEEEEecc
Confidence 3222222 1 123345678888875432 2223333356899999997
No 53
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.89 E-value=3e-22 Score=235.35 Aligned_cols=183 Identities=27% Similarity=0.323 Sum_probs=150.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccH
Q 006737 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (633)
Q Consensus 386 L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTR 465 (633)
....+..+|.+.|+..|+.+|.+|+..+.+|+|+||+.+||||||+||++||++++++.... ++|+|.||+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a---------~AL~lYPtn 125 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA---------RALLLYPTN 125 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc---------cEEEEechh
Confidence 45567888999999999999999999999999999999999999999999999999987543 599999999
Q ss_pred HHHHHHHHHHHHHHhcCC-CceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHH-hcccCcccccCCeeEEEEecc
Q 006737 466 ELASQIAAEAIALLKNHD-GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHI-ENKSGLSVRLMGLKMLVLDEA 543 (633)
Q Consensus 466 eLa~Qi~~~l~~l~~~~~-~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL-~~~~~~~~~Ls~l~~LVIDEA 543 (633)
+||+++.+.+.++....+ .+.+..++|++.... .+.+..++++||++||..|..++ .....+...++++++|||||+
T Consensus 126 ALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~-r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDEl 204 (851)
T COG1205 126 ALANDQAERLRELISDLPGKVTFGRYTGDTPPEE-RRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDEL 204 (851)
T ss_pred hhHhhHHHHHHHHHHhCCCcceeeeecCCCChHH-HHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecc
Confidence 999999999999998876 578888888887654 33556677899999999998844 444445556889999999999
Q ss_pred cccCCcChHHHH----HHHHH---HCCCCCcEEEEeccCChhh
Q 006737 544 DHLLDLGFRKDV----ENIVD---CLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 544 D~Lld~gf~~~l----~~Il~---~lpk~~Q~IlfSATl~~el 579 (633)
|..-.. |+..| .+++. ..+...|+|+.|||+.+..
T Consensus 205 HtYrGv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~ 246 (851)
T COG1205 205 HTYRGV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG 246 (851)
T ss_pred eecccc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccChH
Confidence 987532 44433 33333 3345789999999998874
No 54
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.88 E-value=1.4e-21 Score=231.20 Aligned_cols=167 Identities=22% Similarity=0.184 Sum_probs=132.6
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 386 ISPLTIKALTA-AGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 386 L~~~Ll~~L~~-~g~~~pt~iQ~~aIp~il~g------rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
.+..++..+.+ ++| .||++|..||+.++++ +|++++|+||||||++|++|++..+... .++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-----------~qv 503 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-----------KQV 503 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-----------CeE
Confidence 44566666655 578 5999999999999985 7999999999999999999999877532 369
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCcccccCCe
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l 535 (633)
+||+||++||.|+++.+++++... ++++..++|+...... ...+..+.++|||+||. ++.. ...+.++
T Consensus 504 lvLvPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll~~----~v~f~~L 574 (926)
T TIGR00580 504 AVLVPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LLQK----DVKFKDL 574 (926)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----HhhC----CCCcccC
Confidence 999999999999999999988765 6888888887764432 33455667899999994 2322 2568899
Q ss_pred eEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 536 ~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
.+|||||+|++. ......+..++.+.|+++||||..+.
T Consensus 575 ~llVIDEahrfg-----v~~~~~L~~~~~~~~vL~~SATpipr 612 (926)
T TIGR00580 575 GLLIIDEEQRFG-----VKQKEKLKELRTSVDVLTLSATPIPR 612 (926)
T ss_pred CEEEeecccccc-----hhHHHHHHhcCCCCCEEEEecCCCHH
Confidence 999999999953 23445566677889999999997665
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.87 E-value=2.5e-21 Score=224.57 Aligned_cols=165 Identities=21% Similarity=0.268 Sum_probs=130.1
Q ss_pred HHHHHHHH-HcCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 006737 388 PLTIKALT-AAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLI 460 (633)
Q Consensus 388 ~~Ll~~L~-~~g~~~pt~iQ~~aIp~il~g------rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLI 460 (633)
..+.+.+. .++| +||++|..+|+.|..+ .++|++|+||||||++|++|++..+.. +.++||
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----------g~q~li 315 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----------GYQAAL 315 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----------CCeEEE
Confidence 34445444 4566 6999999999999987 489999999999999999999987642 347999
Q ss_pred EcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchH---HHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 461 LCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 461 LvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~---~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
++||++||.|+++.+++++... ++++.+++|+..... ....+..+.++||||||+.+.+ ...+.++.+
T Consensus 316 laPT~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~--------~v~~~~l~l 386 (681)
T PRK10917 316 MAPTEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD--------DVEFHNLGL 386 (681)
T ss_pred EeccHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc--------cchhcccce
Confidence 9999999999999999998765 789999999987543 3345556679999999987743 245789999
Q ss_pred EEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
|||||+|++.. .....+.......++++||||..+.
T Consensus 387 vVIDE~Hrfg~-----~qr~~l~~~~~~~~iL~~SATp~pr 422 (681)
T PRK10917 387 VIIDEQHRFGV-----EQRLALREKGENPHVLVMTATPIPR 422 (681)
T ss_pred EEEechhhhhH-----HHHHHHHhcCCCCCEEEEeCCCCHH
Confidence 99999999632 2223333445568999999997655
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.87 E-value=3.1e-21 Score=232.56 Aligned_cols=164 Identities=22% Similarity=0.203 Sum_probs=130.3
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEc
Q 006737 389 LTIKALTAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462 (633)
Q Consensus 389 ~Ll~~L~~~g~~~pt~iQ~~aIp~il~g------rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILv 462 (633)
...+....++| .||++|.+||+.++.+ +|+++||+||+|||.+|+++++..+.. +.+||||+
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----------g~qvlvLv 656 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----------HKQVAVLV 656 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----------CCeEEEEe
Confidence 34445566788 7999999999999997 899999999999999999888766532 24799999
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHH---HhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEE
Q 006737 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR---LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (633)
Q Consensus 463 PTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~---l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LV 539 (633)
||++||.|+++.+.+.+... ++++.+++|+.+...+... +..+.++|||+||+.| .. ...+.++.+||
T Consensus 657 PT~eLA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~----~v~~~~L~lLV 727 (1147)
T PRK10689 657 PTTLLAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS----DVKWKDLGLLI 727 (1147)
T ss_pred CcHHHHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC----CCCHhhCCEEE
Confidence 99999999999999887655 6788888888776655443 3446789999999643 22 24578999999
Q ss_pred EecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 540 LDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 540 IDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
|||+|++ |+. ....+..++.++|+++||||..+.
T Consensus 728 IDEahrf---G~~--~~e~lk~l~~~~qvLl~SATpipr 761 (1147)
T PRK10689 728 VDEEHRF---GVR--HKERIKAMRADVDILTLTATPIPR 761 (1147)
T ss_pred Eechhhc---chh--HHHHHHhcCCCCcEEEEcCCCCHH
Confidence 9999997 332 234566778899999999997765
No 57
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.87 E-value=1.6e-21 Score=236.83 Aligned_cols=155 Identities=22% Similarity=0.314 Sum_probs=120.5
Q ss_pred EEccCCCCchhhhHHHHHHHHHHhcCCCC--CCCCCCeEEEEEcccHHHHHHHHHHHHHHHh-----------cCCCceE
Q 006737 421 VKAKTGTGKSIAFLLPAIEAVLKATSSST--TQLVPPIYVLILCPTRELASQIAAEAIALLK-----------NHDGIGV 487 (633)
Q Consensus 421 v~ApTGSGKTlaylLPiL~~l~~~~~~~~--~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~-----------~~~~i~v 487 (633)
|+||||||||+||.||+|+.++....... .....++++|||+|+++|++|+++.++..+. ...+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999986431100 0112357899999999999999998875321 1236899
Q ss_pred EEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcC----hHHHHHHHHHHCC
Q 006737 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG----FRKDVENIVDCLP 563 (633)
Q Consensus 488 ~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~g----f~~~l~~Il~~lp 563 (633)
..++|++....+.+.++ .++||||+||++|..+|.+.. ...|++|++|||||+|.|++.. +...+.+|...++
T Consensus 81 ~vrtGDt~~~eR~rll~-~ppdILVTTPEsL~~LLtsk~--r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~ 157 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTR-NPPDILITTPESLYLMLTSRA--RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH 157 (1490)
T ss_pred EEEECCCCHHHHHHHhc-CCCCEEEecHHHHHHHHhhhh--hhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC
Confidence 99999998776554444 468999999999998886432 2458999999999999999653 4556677777778
Q ss_pred CCCcEEEEeccCChh
Q 006737 564 RRRQSLLFSATMPKE 578 (633)
Q Consensus 564 k~~Q~IlfSATl~~e 578 (633)
.+.|+|+||||+++.
T Consensus 158 ~~~QrIgLSATI~n~ 172 (1490)
T PRK09751 158 TSAQRIGLSATVRSA 172 (1490)
T ss_pred CCCeEEEEEeeCCCH
Confidence 889999999999985
No 58
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.86 E-value=6.9e-21 Score=219.23 Aligned_cols=165 Identities=22% Similarity=0.276 Sum_probs=130.0
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEc
Q 006737 389 LTIKALTAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462 (633)
Q Consensus 389 ~Ll~~L~~~g~~~pt~iQ~~aIp~il~g------rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILv 462 (633)
.+.+.+...+| +||++|..||+.|+++ .+.+++|+||||||++|++|++..+.. +.+++|++
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----------g~qvlila 291 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----------GYQVALMA 291 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEEC
Confidence 34556667788 7999999999999986 368999999999999999999987643 24699999
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchH---HHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEE
Q 006737 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (633)
Q Consensus 463 PTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~---~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LV 539 (633)
||++||.|+++.+.+++... ++++.+++|+..... ....+..+.++|||+||+.|.+ ...+.++.+||
T Consensus 292 PT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~--------~~~~~~l~lvV 362 (630)
T TIGR00643 292 PTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE--------KVEFKRLALVI 362 (630)
T ss_pred CHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc--------cccccccceEE
Confidence 99999999999999998765 789999999987654 3345566678999999987753 24578999999
Q ss_pred EecccccCCcChHHHHHHHHHHCC--CCCcEEEEeccCChh
Q 006737 540 LDEADHLLDLGFRKDVENIVDCLP--RRRQSLLFSATMPKE 578 (633)
Q Consensus 540 IDEAD~Lld~gf~~~l~~Il~~lp--k~~Q~IlfSATl~~e 578 (633)
|||+|++... +...+..... ...|+++||||..+.
T Consensus 363 IDEaH~fg~~----qr~~l~~~~~~~~~~~~l~~SATp~pr 399 (630)
T TIGR00643 363 IDEQHRFGVE----QRKKLREKGQGGFTPHVLVMSATPIPR 399 (630)
T ss_pred EechhhccHH----HHHHHHHhcccCCCCCEEEEeCCCCcH
Confidence 9999996422 2223333332 268999999997554
No 59
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.86 E-value=1.7e-21 Score=226.41 Aligned_cols=177 Identities=23% Similarity=0.298 Sum_probs=143.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcc
Q 006737 385 GISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (633)
Q Consensus 385 ~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~-il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvP 463 (633)
.+.+.+.+.+...++.++.+-|+.++.. ++.++|+|||+|||||||++.++.+++.+.+.. .++|||||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~----------~k~vYivP 84 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGG----------GKVVYIVP 84 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcC----------CcEEEEeC
Confidence 3677888888888887877777777766 455699999999999999999999999988752 25999999
Q ss_pred cHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecc
Q 006737 464 TRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543 (633)
Q Consensus 464 TReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEA 543 (633)
+++||.++++.+..+.. + |++|...+|+..... ..+. .++|||+||+++-.++.+... .+..|++|||||+
T Consensus 85 lkALa~Ek~~~~~~~~~-~-GirV~~~TgD~~~~~--~~l~--~~~ViVtT~EK~Dsl~R~~~~---~~~~V~lvViDEi 155 (766)
T COG1204 85 LKALAEEKYEEFSRLEE-L-GIRVGISTGDYDLDD--ERLA--RYDVIVTTPEKLDSLTRKRPS---WIEEVDLVVIDEI 155 (766)
T ss_pred hHHHHHHHHHHhhhHHh-c-CCEEEEecCCcccch--hhhc--cCCEEEEchHHhhHhhhcCcc---hhhcccEEEEeee
Confidence 99999999999994433 3 899999999987554 2222 379999999999888877643 5779999999999
Q ss_pred cccCCcChHHHHHHHHHHCC---CCCcEEEEeccCChhhh
Q 006737 544 DHLLDLGFRKDVENIVDCLP---RRRQSLLFSATMPKELV 580 (633)
Q Consensus 544 D~Lld~gf~~~l~~Il~~lp---k~~Q~IlfSATl~~el~ 580 (633)
|.+.+...+..++.|+..++ ..+|++++|||+|+...
T Consensus 156 H~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~e 195 (766)
T COG1204 156 HLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEE 195 (766)
T ss_pred eecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHH
Confidence 99998766777777766544 34899999999999843
No 60
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.86 E-value=4e-21 Score=219.67 Aligned_cols=229 Identities=19% Similarity=0.243 Sum_probs=160.4
Q ss_pred HcCCCCCcHHHHHHHHHHhC-CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHH
Q 006737 396 AAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (633)
Q Consensus 396 ~~g~~~pt~iQ~~aIp~il~-grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~ 474 (633)
-++|..++.+|..++|.+.. +.|+|||||||+|||..|+|.||+.+.+. .+.........++|||+|+++||.++++.
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~-~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEH-EEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhh-ccccccccCCceEEEEechHHHHHHHHHH
Confidence 36788999999999999876 45999999999999999999999988763 22233344567899999999999999988
Q ss_pred HHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHH
Q 006737 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (633)
Q Consensus 475 l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~ 554 (633)
+.+.+... ++.|..++|++...... +. .|+|||+||+.+--.-....+....++.|++|||||+|.|-+. .++.
T Consensus 184 ~~kkl~~~-gi~v~ELTGD~ql~~te--i~--~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpv 257 (1230)
T KOG0952|consen 184 FSKKLAPL-GISVRELTGDTQLTKTE--IA--DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPV 257 (1230)
T ss_pred Hhhhcccc-cceEEEecCcchhhHHH--HH--hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccch
Confidence 88777655 89999999998766443 22 3799999999974332222222344778999999999998754 4555
Q ss_pred HHHHHH-------HCCCCCcEEEEeccCChhhhccccc---eEeeeccccccccCccceEEEeehh--------------
Q 006737 555 VENIVD-------CLPRRRQSLLFSATMPKELVLKREH---TYIDTVGLGSVETPVKVSKYNIYVF-------------- 610 (633)
Q Consensus 555 l~~Il~-------~lpk~~Q~IlfSATl~~el~l~~~~---~~i~~~~~~~~~~~~~V~q~~i~v~-------------- 610 (633)
++.|+. ......++|++|||+|+-+.+...- .+...........|..+++.++-+.
T Consensus 258 lEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 258 LETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHH
Confidence 555544 3345688999999999985433211 1111111122334445555554321
Q ss_pred --hHHHHhhcCCceEEEEEcccc
Q 006737 611 --VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 --~l~~~~k~~~~~~LVFcnT~s 631 (633)
.-.......+.+++|||.|.+
T Consensus 338 ~~~kv~e~~~~g~qVlvFvhsR~ 360 (1230)
T KOG0952|consen 338 CYDKVVEFLQEGHQVLVFVHSRN 360 (1230)
T ss_pred HHHHHHHHHHcCCeEEEEEecCh
Confidence 122233456789999999875
No 61
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.85 E-value=1.1e-20 Score=205.16 Aligned_cols=234 Identities=23% Similarity=0.215 Sum_probs=177.6
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~-il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
...++|.|++.+.+.|...|++.+.|+|..++.. ++.|.|++|+++|+||||++.-|.-+..++..+. +
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~----------K 263 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK----------K 263 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC----------e
Confidence 4568999999999999999999999999999988 7899999999999999999999988888877543 5
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHH---HHhcCCCcEEEECchhhHHHHhcccCcccccCC
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR---RLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~---~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~ 534 (633)
.|+|+|..+||+|.++.|+...... ++++.+-+|......... .-....+||||+|.+.+-.+|..+ ..+.+
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg----~~lgd 338 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG----KDLGD 338 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC----Ccccc
Confidence 8999999999999999999887665 788888887765554322 112235799999999998888765 56889
Q ss_pred eeEEEEecccccCCcChHHHHHHHH---HHCCCCCcEEEEeccCChhhhccccceEeeeccccccccCccceEEEeehh-
Q 006737 535 LKMLVLDEADHLLDLGFRKDVENIV---DCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVSKYNIYVF- 610 (633)
Q Consensus 535 l~~LVIDEAD~Lld~gf~~~l~~Il---~~lpk~~Q~IlfSATl~~el~l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~- 610 (633)
|..|||||+|.|-+...+..+.-++ ..+-+..|+|.+|||+.|...+......- . +.....|..++.+.+++.
T Consensus 339 iGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~-l--V~y~~RPVplErHlvf~~~ 415 (830)
T COG1202 339 IGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAK-L--VLYDERPVPLERHLVFARN 415 (830)
T ss_pred cceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCe-e--EeecCCCCChhHeeeeecC
Confidence 9999999999998765555555443 44456899999999998875443211110 0 112345666777766653
Q ss_pred ----------hH-----HHHhhcCCceEEEEEccc
Q 006737 611 ----------VL-----VLSIKIQAFYIICFVYTI 630 (633)
Q Consensus 611 ----------~l-----~~~~k~~~~~~LVFcnT~ 630 (633)
+. ....+.--.++|||.||.
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SR 450 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSR 450 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecch
Confidence 11 112233346899999986
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.82 E-value=1.5e-19 Score=212.26 Aligned_cols=199 Identities=20% Similarity=0.186 Sum_probs=138.8
Q ss_pred HHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCc
Q 006737 406 QEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI 485 (633)
Q Consensus 406 Q~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i 485 (633)
-.+.+..+.++++++++|+||||||++|.+|+++.... ..++||++|||++|.|+++.+........+.
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~ 78 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGE 78 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----------CCeEEEECChHHHHHHHHHHHHHHhCcccCc
Confidence 34556677788999999999999999999998864211 1369999999999999999987665444466
Q ss_pred eEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccc-cCCcCh-HHHHHHHHHHCC
Q 006737 486 GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH-LLDLGF-RKDVENIVDCLP 563 (633)
Q Consensus 486 ~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~-Lld~gf-~~~l~~Il~~lp 563 (633)
.|+..+++.... ....+|+|+|||+|++++... ..|+++++|||||||. .++.++ ...+..++..++
T Consensus 79 ~VGy~vr~~~~~-------~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr 147 (812)
T PRK11664 79 TVGYRMRAESKV-------GPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQQGLR 147 (812)
T ss_pred eEEEEecCcccc-------CCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC
Confidence 777766654422 123589999999999998764 5689999999999997 455443 334456677788
Q ss_pred CCCcEEEEeccCChhhh--ccccceEeeeccccccccCccceEEEeehh-----------hHHHHhhcCCceEEEEEccc
Q 006737 564 RRRQSLLFSATMPKELV--LKREHTYIDTVGLGSVETPVKVSKYNIYVF-----------VLVLSIKIQAFYIICFVYTI 630 (633)
Q Consensus 564 k~~Q~IlfSATl~~el~--l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~-----------~l~~~~k~~~~~~LVFcnT~ 630 (633)
++.|+|+||||++.+.. +..+...+...+ ....|+++|+.+. .+..........+|||||++
T Consensus 148 ~~lqlilmSATl~~~~l~~~~~~~~~I~~~g-----r~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~ 222 (812)
T PRK11664 148 DDLKLLIMSATLDNDRLQQLLPDAPVIVSEG-----RSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGV 222 (812)
T ss_pred ccceEEEEecCCCHHHHHHhcCCCCEEEecC-----ccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCH
Confidence 89999999999997732 111222222111 1123666665332 12222333467899999986
Q ss_pred c
Q 006737 631 S 631 (633)
Q Consensus 631 s 631 (633)
.
T Consensus 223 ~ 223 (812)
T PRK11664 223 G 223 (812)
T ss_pred H
Confidence 4
No 63
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.82 E-value=1.7e-19 Score=207.13 Aligned_cols=158 Identities=17% Similarity=0.201 Sum_probs=115.3
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCCchhh---------hHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHH
Q 006737 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIA---------FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (633)
Q Consensus 403 t~iQ~~aIp~il~grDvLv~ApTGSGKTla---------ylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~ 473 (633)
..+|.++++.++.|+|+|++|+||||||.+ |++|.+..+..-.. .....+++|++|||+||.|+..
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~-----~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP-----NFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc-----ccCCcEEEEECcHHHHHHHHHH
Confidence 358999999999999999999999999996 45555554422110 1123479999999999999999
Q ss_pred HHHHHHhc--CCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcCh
Q 006737 474 EAIALLKN--HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551 (633)
Q Consensus 474 ~l~~l~~~--~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf 551 (633)
.+.+..++ ..+..+.+.+|+... ..........+|||+|++.. ...|+++++|||||||.++..+
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~--~~~~t~~k~~~Ilv~T~~L~----------l~~L~~v~~VVIDEaHEr~~~~- 307 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPD--ELINTNPKPYGLVFSTHKLT----------LNKLFDYGTVIIDEVHEHDQIG- 307 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcch--HHhhcccCCCCEEEEeCccc----------ccccccCCEEEccccccCccch-
Confidence 98877654 246778889999762 22122222469999997631 1347899999999999998764
Q ss_pred HHHHHHHHHHC-CCCCcEEEEeccCChhh
Q 006737 552 RKDVENIVDCL-PRRRQSLLFSATMPKEL 579 (633)
Q Consensus 552 ~~~l~~Il~~l-pk~~Q~IlfSATl~~el 579 (633)
+.+..++..+ ++.+|+++||||++.++
T Consensus 308 -DllL~llk~~~~~~rq~ILmSATl~~dv 335 (675)
T PHA02653 308 -DIIIAVARKHIDKIRSLFLMTATLEDDR 335 (675)
T ss_pred -hHHHHHHHHhhhhcCEEEEEccCCcHhH
Confidence 4455555544 34469999999998764
No 64
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.82 E-value=2.8e-19 Score=209.65 Aligned_cols=200 Identities=23% Similarity=0.197 Sum_probs=138.8
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCC
Q 006737 405 VQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDG 484 (633)
Q Consensus 405 iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~ 484 (633)
+-.+.+..+.+++++|++|+||||||++|.+++++.... ..++||++|||++|.|+++.+........+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-----------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g 74 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-----------GGKIIMLEPRRLAARSAAQRLASQLGEAVG 74 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-----------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcC
Confidence 334566677788999999999999999999999876521 246999999999999999988665543335
Q ss_pred ceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccc-ccCCcChHHH-HHHHHHHC
Q 006737 485 IGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD-HLLDLGFRKD-VENIVDCL 562 (633)
Q Consensus 485 i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD-~Lld~gf~~~-l~~Il~~l 562 (633)
..|+..+++... ....++|+|+|||+|++++.+. ..|+++++||||||| ++++.++... +..+...+
T Consensus 75 ~~VGy~vr~~~~-------~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l 143 (819)
T TIGR01970 75 QTVGYRVRGENK-------VSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLALALDVQSSL 143 (819)
T ss_pred cEEEEEEccccc-------cCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHHHHHHHHHhc
Confidence 556555544321 1234699999999999999764 568999999999999 4777666443 45566678
Q ss_pred CCCCcEEEEeccCChhhh--ccccceEeeeccccccccCccceEEEeehh-----------hHHHHhhcCCceEEEEEcc
Q 006737 563 PRRRQSLLFSATMPKELV--LKREHTYIDTVGLGSVETPVKVSKYNIYVF-----------VLVLSIKIQAFYIICFVYT 629 (633)
Q Consensus 563 pk~~Q~IlfSATl~~el~--l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~-----------~l~~~~k~~~~~~LVFcnT 629 (633)
+++.|+|+||||++.+.. +..+...+... .....|+++|+.+. .+..........+|||||+
T Consensus 144 r~dlqlIlmSATl~~~~l~~~l~~~~vI~~~-----gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg 218 (819)
T TIGR01970 144 REDLKILAMSATLDGERLSSLLPDAPVVESE-----GRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPG 218 (819)
T ss_pred CCCceEEEEeCCCCHHHHHHHcCCCcEEEec-----CcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 889999999999998742 11122222211 11223666665432 1222223345789999998
Q ss_pred cc
Q 006737 630 IS 631 (633)
Q Consensus 630 ~s 631 (633)
..
T Consensus 219 ~~ 220 (819)
T TIGR01970 219 QA 220 (819)
T ss_pred HH
Confidence 64
No 65
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.81 E-value=9.3e-20 Score=192.24 Aligned_cols=120 Identities=33% Similarity=0.449 Sum_probs=101.7
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHhcCC--CceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 455 PIYVLILCPTRELASQIAAEAIALLKNHD--GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 455 ~~~vLILvPTReLa~Qi~~~l~~l~~~~~--~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
.|.+||+-|.|||+.|+++.++++-.+.. .++..++.||.....+...++.+ .+|+|+||++|.+++... .+.|
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g-~~ivvGtpgRl~~~is~g---~~~l 361 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDG-THIVVGTPGRLLQPISKG---LVTL 361 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcC-ceeeecCchhhhhhhhcc---ceee
Confidence 47899999999999999998888765543 45666888888877777777664 799999999999999876 4778
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCC------CCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPR------RRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk------~~Q~IlfSATl~~e 578 (633)
..+.++|+||||.++..++-+.|.++...+|+ ..|.+++|||+..-
T Consensus 362 t~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~f 413 (725)
T KOG0349|consen 362 THCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIF 413 (725)
T ss_pred eeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEE
Confidence 99999999999999998999999888887774 57999999998754
No 66
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.81 E-value=7.1e-20 Score=204.80 Aligned_cols=165 Identities=26% Similarity=0.383 Sum_probs=132.5
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHH
Q 006737 392 KALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (633)
Q Consensus 392 ~~L~~-~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Q 470 (633)
..|.. +||..+.+-|.++|..+++|+|+++..|||+||++||+||++-. .+ -+|||+|..+|+.+
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~G-----------~TLVVSPLiSLM~D 72 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---EG-----------LTLVVSPLISLMKD 72 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---CC-----------CEEEECchHHHHHH
Confidence 44554 69999999999999999999999999999999999999999832 11 28999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccC
Q 006737 471 IAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 471 i~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Ll 547 (633)
+++.++.. |+.+.++.+..+..+.. ..+..+..+||+-+|++|..---.. .+.--.|.++|||||||++
T Consensus 73 QV~~l~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~---~L~~~~i~l~vIDEAHCiS 144 (590)
T COG0514 73 QVDQLEAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE---LLKRLPISLVAIDEAHCIS 144 (590)
T ss_pred HHHHHHHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH---HHHhCCCceEEechHHHHh
Confidence 99888876 78888888876555433 4455566899999999985421111 1223478899999999999
Q ss_pred CcC--hHHHHHHHHH---HCCCCCcEEEEeccCChhh
Q 006737 548 DLG--FRKDVENIVD---CLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 548 d~g--f~~~l~~Il~---~lpk~~Q~IlfSATl~~el 579 (633)
+|| |++.+..+-. .+| +.++++||||.++.+
T Consensus 145 qWGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v 180 (590)
T COG0514 145 QWGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRV 180 (590)
T ss_pred hcCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHH
Confidence 998 9998887754 444 789999999999985
No 67
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.7e-19 Score=208.61 Aligned_cols=148 Identities=21% Similarity=0.339 Sum_probs=128.5
Q ss_pred cccCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCC
Q 006737 382 DECGISPLTIKALT-----AAGYIQM---TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLV 453 (633)
Q Consensus 382 ~el~L~~~Ll~~L~-----~~g~~~p---t~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~ 453 (633)
+.|.+...+.+.+. .+||..| +|+|.++|+.++.+++++++++||+|||++|+||++..++...
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-------- 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-------- 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC--------
Confidence 67888898888887 6899998 9999999999999999999999999999999999998876431
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccCccccc
Q 006737 454 PPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGLSVRL 532 (633)
Q Consensus 454 ~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~~~~~L 532 (633)
.++||+||++||.|+.+.+..+..+. ++++.+++||.....+...+ .|||+||||++| .++|.... +.+
T Consensus 137 ---~v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y---~~DIVygTPgRLgfDyLrd~~---~~~ 206 (970)
T PRK12899 137 ---PVHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY---QCDVVYGTASEFGFDYLRDNS---IAT 206 (970)
T ss_pred ---CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc---CCCEEEECCChhHHHHhhCCC---CCc
Confidence 28899999999999999999998876 79999999999988766544 389999999999 99997652 333
Q ss_pred C-------CeeEEEEecccccC
Q 006737 533 M-------GLKMLVLDEADHLL 547 (633)
Q Consensus 533 s-------~l~~LVIDEAD~Ll 547 (633)
+ .+.++||||||.||
T Consensus 207 ~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 207 RKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CHHHhhcccccEEEEechhhhh
Confidence 3 56899999999987
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.80 E-value=3.9e-19 Score=190.70 Aligned_cols=148 Identities=25% Similarity=0.239 Sum_probs=102.9
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccch
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~ 497 (633)
|++++||||||||++|++|++..+.... ..++||++|+++|+.|+++.+..++.. .+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~---------~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~ 67 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK---------ADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFK 67 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC---------CCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHH
Confidence 6899999999999999999998764321 236999999999999999999998642 344445443211
Q ss_pred H------------HHHHHhc-----CCCcEEEECchhhHHHHhccc-CcccccC--CeeEEEEecccccCCcChHHHHHH
Q 006737 498 V------------DQRRLES-----DPCQILVATPGRLLDHIENKS-GLSVRLM--GLKMLVLDEADHLLDLGFRKDVEN 557 (633)
Q Consensus 498 ~------------~~~~l~~-----~~~dILIaTPgrLl~lL~~~~-~~~~~Ls--~l~~LVIDEAD~Lld~gf~~~l~~ 557 (633)
. ....... ...+|+|+||++++..+.... .....+. ..++|||||||.++++++.. +..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~ 146 (358)
T TIGR01587 68 RIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILA 146 (358)
T ss_pred HHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHH
Confidence 0 0000001 135799999999988776521 1111122 23789999999999865443 555
Q ss_pred HHHHCC-CCCcEEEEeccCChhh
Q 006737 558 IVDCLP-RRRQSLLFSATMPKEL 579 (633)
Q Consensus 558 Il~~lp-k~~Q~IlfSATl~~el 579 (633)
++..+. .+.|+++||||+|+.+
T Consensus 147 ~l~~l~~~~~~~i~~SATlp~~l 169 (358)
T TIGR01587 147 VLEVLKDNDVPILLMSATLPKFL 169 (358)
T ss_pred HHHHHHHcCCCEEEEecCchHHH
Confidence 555554 4789999999999764
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.80 E-value=1.3e-18 Score=187.57 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=115.3
Q ss_pred HHHHHHHHHhCCCc--EEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcC
Q 006737 405 VQEATLSACLEGKD--AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482 (633)
Q Consensus 405 iQ~~aIp~il~grD--vLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~ 482 (633)
+|.++++.+.++.+ ++++||||||||+||++|++.. . .++||++|+++|+.|+++.+..++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----~----------~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----E----------NDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----C----------CCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 59999999999874 7899999999999999998841 1 248999999999999999999987543
Q ss_pred ---CCceEEEEECCccchH--H-----------------HHHHhcCCCcEEEECchhhHHHHhcccC-----cccccCCe
Q 006737 483 ---DGIGVLTLVGGTRFKV--D-----------------QRRLESDPCQILVATPGRLLDHIENKSG-----LSVRLMGL 535 (633)
Q Consensus 483 ---~~i~v~~l~Gg~~~~~--~-----------------~~~l~~~~~dILIaTPgrLl~lL~~~~~-----~~~~Ls~l 535 (633)
.++.+..+.|.+.... . ........++|+++||+.|..++..... ....+.++
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 2556666666532210 0 1111223578999999999776643211 11135789
Q ss_pred eEEEEecccccCCcC-----hHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 536 KMLVLDEADHLLDLG-----FRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 536 ~~LVIDEAD~Lld~g-----f~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
++|||||+|.+..++ +...+..++.......++|++|||+++.+
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~ 195 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPAL 195 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHH
Confidence 999999999987543 22234455555455689999999999884
No 70
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.78 E-value=5.9e-18 Score=162.02 Aligned_cols=171 Identities=43% Similarity=0.645 Sum_probs=137.5
Q ss_pred HcCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHH
Q 006737 396 AAGYIQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (633)
Q Consensus 396 ~~g~~~pt~iQ~~aIp~il~g-rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~ 474 (633)
..++..++++|.+++..++.. +.++++++||+|||.+++.+++..+.... ..++||++|++.++.|+...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~ 73 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEE 73 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHH
Confidence 356789999999999999999 99999999999999999999888765432 12599999999999999999
Q ss_pred HHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHH
Q 006737 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (633)
Q Consensus 475 l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~ 554 (633)
+..++... ........++.........+.....+|+++|++.|...+.... .....+.+|||||||.+....+...
T Consensus 74 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~ 149 (201)
T smart00487 74 LKKLGPSL-GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEAHRLLDGGFGDQ 149 (201)
T ss_pred HHHHhccC-CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECHHHHhcCCcHHH
Confidence 98887543 2233444444443444555555545999999999999887652 4567889999999999997678899
Q ss_pred HHHHHHHCCCCCcEEEEeccCChhh
Q 006737 555 VENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 555 l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+..++..+++..+++++|||.++..
T Consensus 150 ~~~~~~~~~~~~~~v~~saT~~~~~ 174 (201)
T smart00487 150 LEKLLKLLPKNVQLLLLSATPPEEI 174 (201)
T ss_pred HHHHHHhCCccceEEEEecCCchhH
Confidence 9999998888899999999998764
No 71
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=4e-17 Score=185.40 Aligned_cols=185 Identities=18% Similarity=0.222 Sum_probs=144.7
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
..| ++...|++||-++..|.+|+|.|+|.+|||++.-..+...- .. ..++||.+|.++|.+|-++.|+
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq-~h----------~TR~iYTSPIKALSNQKfRDFk 361 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ-KH----------MTRTIYTSPIKALSNQKFRDFK 361 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH-hh----------ccceEecchhhhhccchHHHHH
Confidence 344 79999999999999999999999999999998554443211 11 2469999999999999999999
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHH
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~ 556 (633)
..+.. +.+++|+..... .+.++|+|.+.|..+|.++. --++++++||+||+|.+.|...+-.++
T Consensus 362 ~tF~D-----vgLlTGDvqinP--------eAsCLIMTTEILRsMLYrga---dliRDvE~VIFDEVHYiND~eRGvVWE 425 (1248)
T KOG0947|consen 362 ETFGD-----VGLLTGDVQINP--------EASCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVHYINDVERGVVWE 425 (1248)
T ss_pred Hhccc-----cceeecceeeCC--------CcceEeehHHHHHHHHhccc---chhhccceEEEeeeeecccccccccce
Confidence 88653 348888876553 26899999999999998874 337789999999999999999999999
Q ss_pred HHHHHCCCCCcEEEEeccCChhhhccccceEeee--cc-ccccccCccceEEEeeh
Q 006737 557 NIVDCLPRRRQSLLFSATMPKELVLKREHTYIDT--VG-LGSVETPVKVSKYNIYV 609 (633)
Q Consensus 557 ~Il~~lpk~~Q~IlfSATl~~el~l~~~~~~i~~--~~-~~~~~~~~~V~q~~i~v 609 (633)
.++-++|+..++|++|||+|+...+..+-..+.. ++ +.....|..++|+..+-
T Consensus 426 EViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~ 481 (1248)
T KOG0947|consen 426 EVIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTK 481 (1248)
T ss_pred eeeeeccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEec
Confidence 9999999999999999999999766533211111 11 11234566777776643
No 72
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.73 E-value=1.8e-16 Score=183.94 Aligned_cols=153 Identities=21% Similarity=0.249 Sum_probs=118.3
Q ss_pred CCcHHHHHHHHHHhCC---CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACLEG---KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~g---rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
.+|+.|++++..++++ ++++++++||||||.+|+.++...+... .++|||+||++|+.|+++.+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-----------~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-----------KQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHHHHHHHHH
Confidence 6899999999999984 7999999999999999988776665432 3699999999999999999988
Q ss_pred HHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcCh---
Q 006737 478 LLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF--- 551 (633)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf--- 551 (633)
.+ +..+..++|+.+..... ..+..+.++|||+|++.+. ..+.++.+|||||+|...-+..
T Consensus 213 ~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEeh~~s~~~~~~p 278 (679)
T PRK05580 213 RF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEEHDSSYKQQEGP 278 (679)
T ss_pred Hh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECCCccccccCcCC
Confidence 65 56788999987765433 3445566899999998763 3467899999999998763321
Q ss_pred ---HHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 552 ---RKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 552 ---~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
...+. ++.....+.|+|++|||.+.+.
T Consensus 279 ~y~~r~va-~~ra~~~~~~~il~SATps~~s 308 (679)
T PRK05580 279 RYHARDLA-VVRAKLENIPVVLGSATPSLES 308 (679)
T ss_pred CCcHHHHH-HHHhhccCCCEEEEcCCCCHHH
Confidence 12222 2333446799999999987663
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.73 E-value=2.8e-17 Score=184.69 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=114.5
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
...|+++|.++++.++.+++.++++|||+|||+++.+. ...+.... ..++|||+||++|+.|+.+.+.++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~~---------~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLENY---------EGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhcC---------CCeEEEEECcHHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999976432 22222221 126999999999999999999987
Q ss_pred HhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHH
Q 006737 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (633)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~I 558 (633)
+... ...+..+.+|.... ...+|+|+||++|..... ..+.++++|||||||++... .+..+
T Consensus 182 ~~~~-~~~~~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~~~----~~~~i 242 (501)
T PHA02558 182 RLFP-REAMHKIYSGTAKD--------TDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFTGK----SLTSI 242 (501)
T ss_pred cccc-ccceeEEecCcccC--------CCCCEEEeeHHHHhhchh------hhccccCEEEEEchhcccch----hHHHH
Confidence 6432 34455566665422 235899999999876432 23678999999999999754 45677
Q ss_pred HHHCCCCCcEEEEeccCChh
Q 006737 559 VDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 559 l~~lpk~~Q~IlfSATl~~e 578 (633)
+..+++.+|+++||||+...
T Consensus 243 l~~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 243 ITKLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred HHhhhccceEEEEeccCCCc
Confidence 77777778999999999753
No 74
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.72 E-value=3e-17 Score=192.24 Aligned_cols=165 Identities=19% Similarity=0.209 Sum_probs=139.4
Q ss_pred HHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHH
Q 006737 394 LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (633)
Q Consensus 394 L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~ 473 (633)
....+| .+.++|++++-+|..|.+|++|||||+|||++.-..+...+... -+++|++|.++|.+|.++
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~-----------qrviYTsPIKALsNQKyr 180 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDG-----------QRVIYTSPIKALSNQKYR 180 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcC-----------CceEeccchhhhhhhHHH
Confidence 344566 79999999999999999999999999999998666555444333 249999999999999999
Q ss_pred HHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHH
Q 006737 474 EAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553 (633)
Q Consensus 474 ~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~ 553 (633)
.+...+... .-.+++++|+.... ..+.|+|+|.+.|..++..+ ...+..+..||+||+|.|.+...+.
T Consensus 181 dl~~~fgdv-~~~vGL~TGDv~IN--------~~A~clvMTTEILRnMlyrg---~~~~~~i~~ViFDEvHyi~D~eRG~ 248 (1041)
T COG4581 181 DLLAKFGDV-ADMVGLMTGDVSIN--------PDAPCLVMTTEILRNMLYRG---SESLRDIEWVVFDEVHYIGDRERGV 248 (1041)
T ss_pred HHHHHhhhh-hhhccceecceeeC--------CCCceEEeeHHHHHHHhccC---cccccccceEEEEeeeeccccccch
Confidence 998887543 33467888887754 34789999999999999877 3558899999999999999999999
Q ss_pred HHHHHHHHCCCCCcEEEEeccCChhhhcc
Q 006737 554 DVENIVDCLPRRRQSLLFSATMPKELVLK 582 (633)
Q Consensus 554 ~l~~Il~~lpk~~Q~IlfSATl~~el~l~ 582 (633)
.++.++-++|...|+|+||||+|+...+.
T Consensus 249 VWEE~Ii~lP~~v~~v~LSATv~N~~EF~ 277 (1041)
T COG4581 249 VWEEVIILLPDHVRFVFLSATVPNAEEFA 277 (1041)
T ss_pred hHHHHHHhcCCCCcEEEEeCCCCCHHHHH
Confidence 99999999999999999999999996543
No 75
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=8.4e-17 Score=186.48 Aligned_cols=239 Identities=21% Similarity=0.241 Sum_probs=168.4
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCC-cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcc
Q 006737 385 GISPLTIKALTAAGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (633)
Q Consensus 385 ~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~gr-DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvP 463 (633)
.++.+-..++ .|...+..+|..+..+.+.+. ++++|||||+|||...++-+|+.+-........-.....+++|++|
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 3445555555 466779999999999998875 9999999999999999999999987765533333344568999999
Q ss_pred cHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecc
Q 006737 464 TRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543 (633)
Q Consensus 464 TReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEA 543 (633)
+.+|+..++..+.+.+..+ ++.|..++|+.....++ + ...+||||||+..- .+.+..+......-++++||||.
T Consensus 373 mKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~q--i--eeTqVIV~TPEK~D-iITRk~gdraY~qlvrLlIIDEI 446 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQ--I--EETQVIVTTPEKWD-IITRKSGDRAYEQLVRLLIIDEI 446 (1674)
T ss_pred HHHHHHHHHHHHHhhcccc-CcEEEEecccccchhhh--h--hcceeEEeccchhh-hhhcccCchhHHHHHHHHhhhhh
Confidence 9999999999888887776 89999999987654322 1 13689999999963 34333222233456789999999
Q ss_pred cccCCcChHHHHHHHHHHC-------CCCCcEEEEeccCChhhhcccc--ceEeeeccccccccCccceEEEeehh----
Q 006737 544 DHLLDLGFRKDVENIVDCL-------PRRRQSLLFSATMPKELVLKRE--HTYIDTVGLGSVETPVKVSKYNIYVF---- 610 (633)
Q Consensus 544 D~Lld~gf~~~l~~Il~~l-------pk~~Q~IlfSATl~~el~l~~~--~~~i~~~~~~~~~~~~~V~q~~i~v~---- 610 (633)
|.+-|. .++.++.|+... ...++++++|||+||-...... ...-+.-..+..-.|..+.|.||-+-
T Consensus 447 HLLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 447 HLLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKP 525 (1674)
T ss_pred hhcccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCc
Confidence 998653 455555554432 2368999999999998533221 00111122233456778888888653
Q ss_pred -----------hHHHHhhcCCceEEEEEccccC
Q 006737 611 -----------VLVLSIKIQAFYIICFVYTISM 632 (633)
Q Consensus 611 -----------~l~~~~k~~~~~~LVFcnT~s~ 632 (633)
+-+.+......++||||.|+++
T Consensus 526 ~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkE 558 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKE 558 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEEechH
Confidence 2233444555799999998753
No 76
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.68 E-value=1.3e-16 Score=168.65 Aligned_cols=168 Identities=21% Similarity=0.264 Sum_probs=124.4
Q ss_pred HHHHHHHH-cCCCCC-cHHHHHHHHHHhCC-CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccH
Q 006737 389 LTIKALTA-AGYIQM-TRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (633)
Q Consensus 389 ~Ll~~L~~-~g~~~p-t~iQ~~aIp~il~g-rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTR 465 (633)
.+..+|++ +|+..+ +++|.+++..+..+ +||.|++|||+||+|||+||+|.+ . + .+||++|..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~----------g-ITIV~SPLi 71 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---G----------G-ITIVISPLI 71 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---C----------C-eEEEehHHH
Confidence 45667776 477765 89999999998776 599999999999999999999843 1 1 589999999
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHH---HHh--cCCCcEEEECchhh-----HHHHhcccCcccccCCe
Q 006737 466 ELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR---RLE--SDPCQILVATPGRL-----LDHIENKSGLSVRLMGL 535 (633)
Q Consensus 466 eLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~---~l~--~~~~dILIaTPgrL-----l~lL~~~~~~~~~Ls~l 535 (633)
+|+.++...+..+ .+.+..+....+..+..+ .+. .....||+.||+.- ..+|+.- ..-.-+
T Consensus 72 ALIkDQiDHL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L----~~r~~L 142 (641)
T KOG0352|consen 72 ALIKDQIDHLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL----ANRDVL 142 (641)
T ss_pred HHHHHHHHHHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH----hhhcee
Confidence 9999998888777 444444555444443222 122 23467999999874 3333322 234568
Q ss_pred eEEEEecccccCCcC--hHHHHHHHHH--HCCCCCcEEEEeccCChhh
Q 006737 536 KMLVLDEADHLLDLG--FRKDVENIVD--CLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 536 ~~LVIDEAD~Lld~g--f~~~l~~Il~--~lpk~~Q~IlfSATl~~el 579 (633)
.|+|||||||+.+|| |++++..+-. ..-.....++++||.+.++
T Consensus 143 ~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~V 190 (641)
T KOG0352|consen 143 RYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKV 190 (641)
T ss_pred eeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhH
Confidence 999999999999998 8888887733 2234788999999999985
No 77
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.67 E-value=2.4e-16 Score=185.33 Aligned_cols=171 Identities=23% Similarity=0.252 Sum_probs=128.9
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHH
Q 006737 389 LTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (633)
Q Consensus 389 ~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa 468 (633)
........+|+..+++-|.++|..++.|+|++|.+|||.||++||+||++ +.. ..+|||.|.++|+
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~--l~~------------gitvVISPL~SLm 317 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL--LLG------------GVTVVISPLISLM 317 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc--ccC------------CceEEeccHHHHH
Confidence 33334445799999999999999999999999999999999999999997 211 2489999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEECCccchH---HHHHHhcC--CCcEEEECchhhHHHHhcccCcccccCC---eeEEEE
Q 006737 469 SQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQRRLESD--PCQILVATPGRLLDHIENKSGLSVRLMG---LKMLVL 540 (633)
Q Consensus 469 ~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~---~~~~l~~~--~~dILIaTPgrLl~lL~~~~~~~~~Ls~---l~~LVI 540 (633)
..+...+... ++....+.++..... ..+.+..+ .++|++.||+.+...-.-. .....|.. |.++||
T Consensus 318 ~DQv~~L~~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-~~~~~L~~~~~lal~vI 391 (941)
T KOG0351|consen 318 QDQVTHLSKK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLL-ESLADLYARGLLALFVI 391 (941)
T ss_pred HHHHHhhhhc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchh-hHHHhccCCCeeEEEEe
Confidence 9877665333 777888887766542 23344444 6899999999985421100 00123444 899999
Q ss_pred ecccccCCcC--hHHHHHHHHHHCC--CCCcEEEEeccCChhh
Q 006737 541 DEADHLLDLG--FRKDVENIVDCLP--RRRQSLLFSATMPKEL 579 (633)
Q Consensus 541 DEAD~Lld~g--f~~~l~~Il~~lp--k~~Q~IlfSATl~~el 579 (633)
|||||++.|| |++.+..+-.... ....+|++|||.+..+
T Consensus 392 DEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v 434 (941)
T KOG0351|consen 392 DEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERV 434 (941)
T ss_pred cHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHH
Confidence 9999999998 8998887744322 2489999999999885
No 78
>PRK13766 Hef nuclease; Provisional
Probab=99.65 E-value=3e-15 Score=176.56 Aligned_cols=160 Identities=22% Similarity=0.203 Sum_probs=123.3
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
.-+++++|..++..++.+ |+|+++|||+|||+++++++...+... +.++|||+||++|+.|+.+.++.+
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~----------~~~vLvl~Pt~~L~~Q~~~~~~~~ 81 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKK----------GGKVLILAPTKPLVEQHAEFFRKF 81 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhC----------CCeEEEEeCcHHHHHHHHHHHHHH
Confidence 447899999999988887 999999999999999999888776311 236999999999999999999887
Q ss_pred HhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHH
Q 006737 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (633)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~I 558 (633)
+.. ....+..++|+........ +.. .++|+|+||+.+...+... ...+.++++|||||||++........+...
T Consensus 82 ~~~-~~~~v~~~~g~~~~~~r~~-~~~-~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~~~~~~~~~~i~~~ 155 (773)
T PRK13766 82 LNI-PEEKIVVFTGEVSPEKRAE-LWE-KAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHRAVGNYAYVYIAER 155 (773)
T ss_pred hCC-CCceEEEEeCCCCHHHHHH-HHh-CCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCccccccccHHHHHHH
Confidence 642 2457788888876553332 222 3589999999998776544 356789999999999998755444445444
Q ss_pred HHHCCCCCcEEEEeccC
Q 006737 559 VDCLPRRRQSLLFSATM 575 (633)
Q Consensus 559 l~~lpk~~Q~IlfSATl 575 (633)
+....+..++++||||.
T Consensus 156 ~~~~~~~~~il~lTaTP 172 (773)
T PRK13766 156 YHEDAKNPLVLGLTASP 172 (773)
T ss_pred HHhcCCCCEEEEEEcCC
Confidence 44455567899999996
No 79
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.62 E-value=1.2e-15 Score=159.09 Aligned_cols=180 Identities=22% Similarity=0.321 Sum_probs=135.2
Q ss_pred cccCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 006737 382 DECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLI 460 (633)
Q Consensus 382 ~el~L~~~Ll~~L~~-~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLI 460 (633)
++++.+....+.|.+ +...+++|+|..+|.+.+.|.|+++..|||.||++||+||+|-. . -.+||
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---d-----------g~alv 139 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---D-----------GFALV 139 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---C-----------CceEe
Confidence 567888888888876 46789999999999999999999999999999999999999722 1 14899
Q ss_pred EcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHH--hcCCCcEEEECchhhHHH--HhcccCcccccC
Q 006737 461 LCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRL--ESDPCQILVATPGRLLDH--IENKSGLSVRLM 533 (633)
Q Consensus 461 LvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l--~~~~~dILIaTPgrLl~l--L~~~~~~~~~Ls 533 (633)
|+|...|+.++.-+++.+ ++....+...++..... ..+ +.....+|+.||+.+... +.+.-...+...
T Consensus 140 i~plislmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~ 214 (695)
T KOG0353|consen 140 ICPLISLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAG 214 (695)
T ss_pred echhHHHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999988888888 45555554444433211 111 223467999999998531 111111124456
Q ss_pred CeeEEEEecccccCCcC--hHHHHHH--HHHHCCCCCcEEEEeccCChhhh
Q 006737 534 GLKMLVLDEADHLLDLG--FRKDVEN--IVDCLPRRRQSLLFSATMPKELV 580 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~g--f~~~l~~--Il~~lpk~~Q~IlfSATl~~el~ 580 (633)
.+.+|.|||+||...|| |++.+.. |+...-+...+|.++||.++.+.
T Consensus 215 ~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl 265 (695)
T KOG0353|consen 215 FFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVL 265 (695)
T ss_pred eeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchh
Confidence 78899999999999998 7877764 46655678999999999999853
No 80
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.62 E-value=3.4e-15 Score=169.61 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccH
Q 006737 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (633)
Q Consensus 386 L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTR 465 (633)
+.+.....+.-...-.++.+|.+.....| |+|+||++|||+|||++.+.-+++++..... -++|+++||+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~---------~KiVF~aP~~ 116 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK---------GKVVFLAPTR 116 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc---------ceEEEeeCCc
Confidence 33444444433445578999999998888 9999999999999999999989988866543 3799999999
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccc
Q 006737 466 ELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (633)
Q Consensus 466 eLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~ 545 (633)
-|+.|+...+..++. +..+....||.........+.. ..+|+|+||..|.+.|..... ..|+.+.++||||||+
T Consensus 117 pLv~QQ~a~~~~~~~---~~~~T~~l~~~~~~~~r~~i~~-s~~vff~TpQil~ndL~~~~~--~~ls~fs~iv~DE~Hr 190 (746)
T KOG0354|consen 117 PLVNQQIACFSIYLI---PYSVTGQLGDTVPRSNRGEIVA-SKRVFFRTPQILENDLKSGLH--DELSDFSLIVFDECHR 190 (746)
T ss_pred hHHHHHHHHHhhccC---cccceeeccCccCCCchhhhhc-ccceEEeChHhhhhhcccccc--cccceEEEEEEccccc
Confidence 999999866666653 2445555555333322223322 359999999999999977643 2378999999999999
Q ss_pred cCCcChHHHHH-HHHHHCCCCCcEEEEeccCChhh
Q 006737 546 LLDLGFRKDVE-NIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 546 Lld~gf~~~l~-~Il~~lpk~~Q~IlfSATl~~el 579 (633)
-....-+..+. .++..-....|+|++|||..+..
T Consensus 191 a~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~ 225 (746)
T KOG0354|consen 191 TSKNHPYNNIMREYLDLKNQGNQILGLTASPGSKL 225 (746)
T ss_pred ccccccHHHHHHHHHHhhhccccEEEEecCCCccH
Confidence 88655445554 44444444459999999998763
No 81
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.61 E-value=2e-14 Score=129.54 Aligned_cols=144 Identities=44% Similarity=0.613 Sum_probs=106.4
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccc
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~ 496 (633)
+++++.++||+|||..++..+........ ..++||++|++.++.|+...+...... .+.+..+.+....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~---------~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 69 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK---------GGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSI 69 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc---------CCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcch
Confidence 46899999999999998887776554311 235999999999999999988887653 5667777776554
Q ss_pred hHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccC
Q 006737 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (633)
Q Consensus 497 ~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl 575 (633)
.... .......+|+|+|++.+...+.... .....+.+|||||+|.+....+...............+++++|||.
T Consensus 70 ~~~~-~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 70 KQQE-KLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hHHH-HHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 4333 2334457999999999988776542 3355788999999999987654444333445556788999999995
No 82
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.61 E-value=6.8e-15 Score=177.05 Aligned_cols=147 Identities=27% Similarity=0.329 Sum_probs=97.4
Q ss_pred HHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcc----cHHHHHHHHHHHHHHHhc
Q 006737 406 QEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP----TRELASQIAAEAIALLKN 481 (633)
Q Consensus 406 Q~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvP----TReLa~Qi~~~l~~l~~~ 481 (633)
-.+.+..|..++.++|+|+||||||+ ++|.+- +...... ...+++..| +++||.+|.+++......
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~l--le~g~g~------~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKIC--LELGRGV------KGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHH--HHcCCCC------CCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 34555666677788999999999999 788653 2222110 113445567 567888887777653322
Q ss_pred CCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccc-ccCCcChHHH-HHHHH
Q 006737 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD-HLLDLGFRKD-VENIV 559 (633)
Q Consensus 482 ~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD-~Lld~gf~~~-l~~Il 559 (633)
.|+.-+ ....+ ....++|+|+|||+|++.+... ..|+++++||||||| ++++.+|... +..++
T Consensus 149 ----~VGY~v---rf~~~----~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL 213 (1294)
T PRK11131 149 ----CVGYKV---RFNDQ----VSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNIDFILGYLKELL 213 (1294)
T ss_pred ----eeceee---cCccc----cCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccchHHHHHHHhh
Confidence 222111 11111 1235799999999999999765 458999999999999 5788887653 33333
Q ss_pred HHCCCCCcEEEEeccCChh
Q 006737 560 DCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 560 ~~lpk~~Q~IlfSATl~~e 578 (633)
.. .++.|+|+||||++.+
T Consensus 214 ~~-rpdlKvILmSATid~e 231 (1294)
T PRK11131 214 PR-RPDLKVIITSATIDPE 231 (1294)
T ss_pred hc-CCCceEEEeeCCCCHH
Confidence 22 2478999999999866
No 83
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.58 E-value=9.3e-15 Score=167.66 Aligned_cols=131 Identities=23% Similarity=0.244 Sum_probs=107.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.|+++|..+.+.++.|+ |+.++||+|||++|++|++...+.. ..|+|++||++||.|.++.+..++.
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G-----------~~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTG-----------KGVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhC-----------CCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 78999999999988886 9999999999999999996443332 1489999999999999999999998
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccC---cccccCCeeEEEEecccccCC
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLLD 548 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~---~~~~Ls~l~~LVIDEAD~Lld 548 (633)
+. ++++++++|+.......... .++|+|+||++| .++|...-. ....++.+.++||||||.|+-
T Consensus 123 ~L-GLsv~~i~g~~~~~~r~~~y---~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 123 FL-GLSVGLILSGMSPEERREAY---ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred cC-CCeEEEEeCCCCHHHHHHhc---CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 76 89999999998865433333 379999999999 888865411 124578999999999999873
No 84
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=1.4e-14 Score=165.29 Aligned_cols=130 Identities=28% Similarity=0.315 Sum_probs=104.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.|+++|..+++.++.|+ |+.+.||+|||++|++|++..... +..|+||+||++||.|.++.+..++.
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-----------G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-----------GLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-----------CCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 78999999999999999 999999999999999999977543 24699999999999999999999988
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccC----------------------cccccCCeeE
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG----------------------LSVRLMGLKM 537 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~----------------------~~~~Ls~l~~ 537 (633)
+. ++++++++|+.... .+... ..|||+|+|...| .++|...-. .......+.+
T Consensus 170 ~l-Glsv~~i~gg~~~~--~r~~~-y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 170 AL-GLTVGCVVEDQSPD--ERRAA-YGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred hc-CCEEEEEeCCCCHH--HHHHH-cCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 66 89999999997643 22222 3589999999988 555543311 0122456789
Q ss_pred EEEecccccC
Q 006737 538 LVLDEADHLL 547 (633)
Q Consensus 538 LVIDEAD~Ll 547 (633)
.||||||.++
T Consensus 246 aIvDEvDSiL 255 (656)
T PRK12898 246 AIVDEADSVL 255 (656)
T ss_pred eEeeccccee
Confidence 9999999876
No 85
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1.9e-14 Score=167.15 Aligned_cols=134 Identities=20% Similarity=0.213 Sum_probs=108.4
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.|. .|+++|..+++.++.|+ |+.+.||+|||++|++|++...+.. ..|+|++||++||.|.++.+.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G-----------~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEG-----------KGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcC-----------CCeEEEeCCHHHHHHHHHHHH
Confidence 355 89999999999999887 9999999999999999998655532 359999999999999999999
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhccc---CcccccCCeeEEEEecccccC
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKS---GLSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~---~~~~~Ls~l~~LVIDEAD~Ll 547 (633)
.++... ++.+++++|+.....+.+.. ..+||+|+||++| .++|...- .....+..+.++||||||.|+
T Consensus 141 ~l~~~l-Gl~v~~i~g~~~~~~~r~~~--y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 141 QVYEFL-GLTVGLNFSDIDDASEKKAI--YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHHhhc-CCeEEEEeCCCCcHHHHHHh--cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 999876 89999999998843333333 3489999999999 55554321 011346889999999999887
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.57 E-value=5.3e-14 Score=165.85 Aligned_cols=171 Identities=22% Similarity=0.182 Sum_probs=114.4
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
...|+|+|..+........-+|+.||||+|||.+.++.+.. +..... .-+++|.+||+++++|+++++.++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~~~--------~~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQGL--------ADSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHhCC--------CCeEEEECcHHHHHHHHHHHHHHH
Confidence 45899999988665555667899999999999998776553 333221 125899999999999999999875
Q ss_pred HhcC-CCceEEEEECCccchHHH---------------------HHHh-----cCCCcEEEECchhhHHHHhcccCcccc
Q 006737 479 LKNH-DGIGVLTLVGGTRFKVDQ---------------------RRLE-----SDPCQILVATPGRLLDHIENKSGLSVR 531 (633)
Q Consensus 479 ~~~~-~~i~v~~l~Gg~~~~~~~---------------------~~l~-----~~~~dILIaTPgrLl~lL~~~~~~~~~ 531 (633)
+... ....+.+++|........ ..+. ..-.+|+|||..+++..+-......+.
T Consensus 355 ~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR 434 (878)
T PRK09694 355 ASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIR 434 (878)
T ss_pred HHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHH
Confidence 5422 235677788765432111 0111 012589999999998655332211111
Q ss_pred cC--CeeEEEEecccccCCcChHHHHHHHHHHCC-CCCcEEEEeccCChhh
Q 006737 532 LM--GLKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls--~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp-k~~Q~IlfSATl~~el 579 (633)
+- .-++|||||+|.+- ..+...+..+++.+. ....+|+||||+|..+
T Consensus 435 ~~~La~svvIiDEVHAyD-~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~ 484 (878)
T PRK09694 435 GFGLGRSVLIVDEVHAYD-AYMYGLLEAVLKAQAQAGGSVILLSATLPATL 484 (878)
T ss_pred HHhhccCeEEEechhhCC-HHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHH
Confidence 11 12589999999984 334555666666543 3578999999999874
No 87
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.57 E-value=3.8e-14 Score=153.80 Aligned_cols=163 Identities=19% Similarity=0.128 Sum_probs=130.5
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
.-+++.+|.......+.+ |+|++.|||-|||++.++-+.+.+...+ + ++|+|+||+-|+.|.+..|.+.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~---------~-kvlfLAPTKPLV~Qh~~~~~~v 81 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG---------G-KVLFLAPTKPLVLQHAEFCRKV 81 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC---------C-eEEEecCCchHHHHHHHHHHHH
Confidence 346788888888777766 9999999999999998888877776543 2 6999999999999999999988
Q ss_pred HhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHH
Q 006737 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (633)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~I 558 (633)
+. .+.-.++.++|............. .+|+|+||..+.+-|..+ .+++.++.+||+||||+-....-+..+...
T Consensus 82 ~~-ip~~~i~~ltGev~p~~R~~~w~~--~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGnyAYv~Va~~ 155 (542)
T COG1111 82 TG-IPEDEIAALTGEVRPEEREELWAK--KKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGNYAYVFVAKE 155 (542)
T ss_pred hC-CChhheeeecCCCChHHHHHHHhh--CCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCcchHHHHHHH
Confidence 75 335678899999887755555444 489999999998888766 588999999999999997755444455554
Q ss_pred HHHCCCCCcEEEEeccCChh
Q 006737 559 VDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 559 l~~lpk~~Q~IlfSATl~~e 578 (633)
.....+++.++++|||-...
T Consensus 156 y~~~~k~~~ilgLTASPGs~ 175 (542)
T COG1111 156 YLRSAKNPLILGLTASPGSD 175 (542)
T ss_pred HHHhccCceEEEEecCCCCC
Confidence 44556678899999999876
No 88
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.55 E-value=1.6e-14 Score=166.65 Aligned_cols=134 Identities=21% Similarity=0.234 Sum_probs=98.4
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 398 g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
|. .|+++|...+..+..| .|+.++||+|||++|++|++.+.+.. ..|+||+|+++||.|..+.+..
T Consensus 68 gl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g-----------~~V~VVTpn~yLA~Rdae~m~~ 133 (762)
T TIGR03714 68 GM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTG-----------KGAMLVTTNDYLAKRDAEEMGP 133 (762)
T ss_pred CC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcC-----------CceEEeCCCHHHHHHHHHHHHH
Confidence 44 5666666555555555 79999999999999999987665432 2499999999999999999999
Q ss_pred HHhcCCCceEEEEECCcc---chHHHHHHhcCCCcEEEECchhh-HHHHhcc---cCcccccCCeeEEEEecccccC
Q 006737 478 LLKNHDGIGVLTLVGGTR---FKVDQRRLESDPCQILVATPGRL-LDHIENK---SGLSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~---~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~---~~~~~~Ls~l~~LVIDEAD~Ll 547 (633)
+..++ ++.+.+++++.. ......... ..|+|+|+||++| .++|... ......+..+.++||||||.||
T Consensus 134 l~~~L-GLsv~~~~~~s~~~~~~~~~rr~~-y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 134 VYEWL-GLTVSLGVVDDPDEEYDANEKRKI-YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred HHhhc-CCcEEEEECCCCccccCHHHHHHh-CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 98876 888988877632 222222222 3589999999999 5555322 0112346789999999999986
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=9.3e-14 Score=156.26 Aligned_cols=133 Identities=23% Similarity=0.227 Sum_probs=96.5
Q ss_pred EEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH
Q 006737 420 VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499 (633)
Q Consensus 420 Lv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~ 499 (633)
|+.|+||||||++|+..+. .++..+ .++|||+|+++|+.|+++.+++.+ +..+..++++......
T Consensus 1 LL~g~TGsGKT~v~l~~i~-~~l~~g----------~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIE-KVLALG----------KSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEK 65 (505)
T ss_pred CccCCCCCCHHHHHHHHHH-HHHHcC----------CeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHH
Confidence 4689999999999965543 333322 259999999999999999998875 4567888888765432
Q ss_pred ---HHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcC------hHHHHHHHHHHCCCCCcEEE
Q 006737 500 ---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG------FRKDVENIVDCLPRRRQSLL 570 (633)
Q Consensus 500 ---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~g------f~~~l~~Il~~lpk~~Q~Il 570 (633)
+..+..+.++|||+|+..|. ..+.++.+|||||+|...-++ ....+..+.... .+.++|+
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~-~~~~vil 134 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK-FNCPVVL 134 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh-cCCCEEE
Confidence 34455567899999998663 346789999999999877432 112233333333 4789999
Q ss_pred EeccCChh
Q 006737 571 FSATMPKE 578 (633)
Q Consensus 571 fSATl~~e 578 (633)
+|||.+.+
T Consensus 135 ~SATPsle 142 (505)
T TIGR00595 135 GSATPSLE 142 (505)
T ss_pred EeCCCCHH
Confidence 99997765
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=3.8e-14 Score=164.84 Aligned_cols=130 Identities=22% Similarity=0.240 Sum_probs=104.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.|+++|.-.--.+..|+ |+.++||+|||++|.+|++..++.. ..|+||+||++||.|.++.+..+..
T Consensus 82 ~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G-----------~~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISG-----------RGVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 67788876666666665 8999999999999999999776543 1389999999999999999999988
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccCccc---ccCCeeEEEEecccccC
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGLSV---RLMGLKMLVLDEADHLL 547 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~~~~---~Ls~l~~LVIDEAD~Ll 547 (633)
++ ++.+.+++|+.......... .+||+|+||++| .++|...-.... ....+.++||||||.||
T Consensus 149 ~l-GLtv~~i~gg~~~~~r~~~y---~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 149 FL-GLTVGVIYPDMSHKEKQEAY---KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred cc-CceEEEEeCCCCHHHHHHHh---CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 76 89999999998766554443 479999999999 999876521111 12589999999999887
No 91
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.53 E-value=8e-15 Score=163.57 Aligned_cols=156 Identities=19% Similarity=0.228 Sum_probs=133.9
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
..+.|.|..+|-.+-++.+|+|.|.|.+|||++.-..|.+.+.... +|||.+|-++|.+|-|+++..-+
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ-----------RVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ-----------RVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC-----------eEEeeChhhhhcchhHHHHHHHh
Confidence 3689999999999999999999999999999997776666654432 69999999999999999998876
Q ss_pred hcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHH
Q 006737 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (633)
Q Consensus 480 ~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il 559 (633)
+. |++.+|+..... .+..||+|.+.|..+|.++. --+..|.+||+||+|.|-|...+-.++.-+
T Consensus 197 ~D-----VGLMTGDVTInP--------~ASCLVMTTEILRsMLYRGS---EvmrEVaWVIFDEIHYMRDkERGVVWEETI 260 (1041)
T KOG0948|consen 197 KD-----VGLMTGDVTINP--------DASCLVMTTEILRSMLYRGS---EVMREVAWVIFDEIHYMRDKERGVVWEETI 260 (1041)
T ss_pred cc-----cceeecceeeCC--------CCceeeeHHHHHHHHHhccc---hHhheeeeEEeeeehhccccccceeeeeeE
Confidence 53 677888877553 36799999999999998874 447889999999999999988888888888
Q ss_pred HHCCCCCcEEEEeccCChhhhcc
Q 006737 560 DCLPRRRQSLLFSATMPKELVLK 582 (633)
Q Consensus 560 ~~lpk~~Q~IlfSATl~~el~l~ 582 (633)
-.+|++.+.+++|||+|+...+.
T Consensus 261 IllP~~vr~VFLSATiPNA~qFA 283 (1041)
T KOG0948|consen 261 ILLPDNVRFVFLSATIPNARQFA 283 (1041)
T ss_pred EeccccceEEEEeccCCCHHHHH
Confidence 89999999999999999996554
No 92
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.50 E-value=3e-13 Score=163.49 Aligned_cols=148 Identities=23% Similarity=0.255 Sum_probs=104.4
Q ss_pred HHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceE
Q 006737 408 ATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGV 487 (633)
Q Consensus 408 ~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v 487 (633)
+.+..|..++.+|++|+||||||. ++|.+- +..... ...+++++.|.|-.|..+...+..... ..+
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~l--le~~~~------~~~~I~~tQPRRlAA~svA~RvA~elg----~~l 139 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKIC--LELGRG------SHGLIGHTQPRRLAARTVAQRIAEELG----TPL 139 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHH--HHcCCC------CCceEecCCccHHHHHHHHHHHHHHhC----CCc
Confidence 455666677789999999999999 778763 332211 112567788999888888877766553 333
Q ss_pred EEEECC-ccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccc-ccCCcChHHH-HHHHHHHCCC
Q 006737 488 LTLVGG-TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD-HLLDLGFRKD-VENIVDCLPR 564 (633)
Q Consensus 488 ~~l~Gg-~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD-~Lld~gf~~~-l~~Il~~lpk 564 (633)
+..+|. ...... .+..+.|+|+|||+|+..+... ..|+++++||||||| ++++.+|... +..++... +
T Consensus 140 G~~VGY~vR~~~~----~s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-p 210 (1283)
T TIGR01967 140 GEKVGYKVRFHDQ----VSSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-P 210 (1283)
T ss_pred ceEEeeEEcCCcc----cCCCceeeeccccHHHHHhhhC----cccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-C
Confidence 334442 122111 1234789999999999998765 458999999999999 5888887764 55665444 5
Q ss_pred CCcEEEEeccCChh
Q 006737 565 RRQSLLFSATMPKE 578 (633)
Q Consensus 565 ~~Q~IlfSATl~~e 578 (633)
+.|+|+||||++.+
T Consensus 211 dLKlIlmSATld~~ 224 (1283)
T TIGR01967 211 DLKIIITSATIDPE 224 (1283)
T ss_pred CCeEEEEeCCcCHH
Confidence 78999999999865
No 93
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.47 E-value=2.7e-13 Score=129.94 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=101.8
Q ss_pred CCcHHHHHHHHHHhC-------CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHH
Q 006737 401 QMTRVQEATLSACLE-------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~-------grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~ 473 (633)
+|++.|.+++..+.. .+.+++.+|||||||.+++..+.... . ++||++|+..|+.|..+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~-------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R-------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C-------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c-------------ceeEecCHHHHHHHHHH
Confidence 578999999999884 58999999999999998775444332 2 48999999999999999
Q ss_pred HHHHHHhcCCCceEE---------EEECCccchHHHHHHhcCCCcEEEECchhhHHHHhccc--------CcccccCCee
Q 006737 474 EAIALLKNHDGIGVL---------TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS--------GLSVRLMGLK 536 (633)
Q Consensus 474 ~l~~l~~~~~~i~v~---------~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~--------~~~~~Ls~l~ 536 (633)
.+..+.......... ....................+|+++|...|........ ..........
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 69 EFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred HHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 996665422111000 00011111112223334456899999999987765321 1112345678
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCC
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
+||+||||++....- +..++. .+...+|+||||..
T Consensus 149 ~vI~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 149 LVIIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEEEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred EEEEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 999999999864321 444544 45677999999974
No 94
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=4.6e-13 Score=145.25 Aligned_cols=179 Identities=26% Similarity=0.268 Sum_probs=123.1
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccC-CCCc--hhhhHHHHHHHHHHhc--------------------CCCCCCCCCCe
Q 006737 400 IQMTRVQEATLSACLEGKDAVVKAKT-GTGK--SIAFLLPAIEAVLKAT--------------------SSSTTQLVPPI 456 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grDvLv~ApT-GSGK--TlaylLPiL~~l~~~~--------------------~~~~~~~~~~~ 456 (633)
..+|+.|.+.+-.+.+++|+++.-.| +.|+ +-.|+|++|+|+++.. ....+++.++|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 46899999999999999999876544 2344 5679999999998731 11245788899
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceE--------EEEECC--------ccchHHHHHHhc---------------
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGV--------LTLVGG--------TRFKVDQRRLES--------------- 505 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v--------~~l~Gg--------~~~~~~~~~l~~--------------- 505 (633)
+||||||+|+.|..+++.+..++.....-++ .--++| .+...+.+.+..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999999999988533221010 001111 000011111111
Q ss_pred ---------CCCcEEEECchhhHHHHhcccCccc---ccCCeeEEEEecccccCC--cChHHHHHHHHHHCCCC------
Q 006737 506 ---------DPCQILVATPGRLLDHIENKSGLSV---RLMGLKMLVLDEADHLLD--LGFRKDVENIVDCLPRR------ 565 (633)
Q Consensus 506 ---------~~~dILIaTPgrLl~lL~~~~~~~~---~Ls~l~~LVIDEAD~Lld--~gf~~~l~~Il~~lpk~------ 565 (633)
..+|||||+|..|..+|.+.+.... .|++|.++|||.||.|+. |.+..++..-++.+|.+
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~Df 454 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDVDF 454 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCCCh
Confidence 2579999999999999985443222 389999999999999883 43444444444555542
Q ss_pred ---------------CcEEEEeccCChh
Q 006737 566 ---------------RQSLLFSATMPKE 578 (633)
Q Consensus 566 ---------------~Q~IlfSATl~~e 578 (633)
+|+++||+-..+.
T Consensus 455 SRVR~wyL~~qsr~~rQtl~Fs~y~~~~ 482 (698)
T KOG2340|consen 455 SRVRMWYLDGQSRYFRQTLLFSRYSHPL 482 (698)
T ss_pred hheehheeccHHHHHHHHHHHHhhccHH
Confidence 6999999988776
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=4e-12 Score=147.90 Aligned_cols=130 Identities=24% Similarity=0.258 Sum_probs=104.9
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.|+++|.-..-.+..|+ |+.++||+|||+++.+|++-..+... .|-|++||..||.|.++.+..++.
T Consensus 81 ~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~-----------~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 81 RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGK-----------GVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCC-----------CEEEEecCHHHHHHHHHHHHHHHh
Confidence 68889988777777775 89999999999999999963333221 267999999999999999999988
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccCc---ccccCCeeEEEEecccccC
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGL---SVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~~---~~~Ls~l~~LVIDEAD~Ll 547 (633)
.. ++.+++++|+.+........ .+||+|+||+.| .++|...-.. ...+..+.++||||||.||
T Consensus 148 ~L-Glsv~~i~~~~~~~er~~~y---~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 148 FL-GLSVGVILSGMSPEERREAY---AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred hc-CCeEEEEcCCCCHHHHHHhc---CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 76 89999999998877655544 379999999999 8898755211 1236789999999999887
No 96
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=5.1e-11 Score=134.36 Aligned_cols=152 Identities=23% Similarity=0.253 Sum_probs=110.1
Q ss_pred HHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH-HHHhcCCCc
Q 006737 407 EATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI-ALLKNHDGI 485 (633)
Q Consensus 407 ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~-~l~~~~~~i 485 (633)
++++++|..+--|||||.||||||. ++|.+ |+..+........+++.+ |..|.|-.|..+.+++- ++......+
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQF--LYEAGf~s~~~~~~gmIG-ITqPRRVAaiamAkRVa~EL~~~~~eV 336 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQF--LYEAGFASEQSSSPGMIG-ITQPRRVAAIAMAKRVAFELGVLGSEV 336 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHH--HHHcccCCccCCCCCeee-ecCchHHHHHHHHHHHHHHhccCccce
Confidence 4566777778889999999999998 88866 888776655444455655 89999988888776654 443322234
Q ss_pred eEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCC-----cChHHHHHHHHH
Q 006737 486 GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-----LGFRKDVENIVD 560 (633)
Q Consensus 486 ~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld-----~gf~~~l~~Il~ 560 (633)
...+-+.++-.. ...|.++|.|.|+.-|.++ +.|.....|||||||.-.- .|+...+..|..
T Consensus 337 sYqIRfd~ti~e---------~T~IkFMTDGVLLrEi~~D----flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~ 403 (1172)
T KOG0926|consen 337 SYQIRFDGTIGE---------DTSIKFMTDGVLLREIEND----FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQ 403 (1172)
T ss_pred eEEEEeccccCC---------CceeEEecchHHHHHHHHh----HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHH
Confidence 455555554322 3689999999999999886 6789999999999997652 245555556655
Q ss_pred HCCC------CCcEEEEeccCC
Q 006737 561 CLPR------RRQSLLFSATMP 576 (633)
Q Consensus 561 ~lpk------~~Q~IlfSATl~ 576 (633)
.+.+ ....|+||||+-
T Consensus 404 k~~ke~~~~kpLKLIIMSATLR 425 (1172)
T KOG0926|consen 404 KYYKEQCQIKPLKLIIMSATLR 425 (1172)
T ss_pred HHhhhhcccCceeEEEEeeeEE
Confidence 5444 467899999984
No 97
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.31 E-value=8.7e-12 Score=138.37 Aligned_cols=146 Identities=23% Similarity=0.294 Sum_probs=100.3
Q ss_pred CCCCcHHHHHHHHHHhC----CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLE----GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~----grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~ 474 (633)
...++++|.+++..+.+ .+..++++|||+|||++++..+ ..+. ..+||||||++|+.|..+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~-~~~~-------------~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAI-AELK-------------RSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHH-HHhc-------------CCEEEEECcHHHHHHHHHH
Confidence 34699999999999998 8899999999999998765433 2221 1299999999999999877
Q ss_pred HHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHH--HhcccCcccccCCeeEEEEecccccCCcChH
Q 006737 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH--IENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552 (633)
Q Consensus 475 l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~l--L~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~ 552 (633)
+...+... ..+..+.|+..... . ..|.|+|-..+... +.. .......+|||||||++....+.
T Consensus 100 ~~~~~~~~--~~~g~~~~~~~~~~------~--~~i~vat~qtl~~~~~l~~-----~~~~~~~liI~DE~Hh~~a~~~~ 164 (442)
T COG1061 100 LKKFLLLN--DEIGIYGGGEKELE------P--AKVTVATVQTLARRQLLDE-----FLGNEFGLIIFDEVHHLPAPSYR 164 (442)
T ss_pred HHHhcCCc--cccceecCceeccC------C--CcEEEEEhHHHhhhhhhhh-----hcccccCEEEEEccccCCcHHHH
Confidence 76665321 12344444333211 0 26999998888764 221 22346899999999999876444
Q ss_pred HHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 553 KDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 553 ~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
. +...+.....+++||||.+-
T Consensus 165 ~----~~~~~~~~~~~LGLTATp~R 185 (442)
T COG1061 165 R----ILELLSAAYPRLGLTATPER 185 (442)
T ss_pred H----HHHhhhcccceeeeccCcee
Confidence 3 33333322228999999763
No 98
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.31 E-value=7.5e-12 Score=143.35 Aligned_cols=165 Identities=22% Similarity=0.239 Sum_probs=123.9
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.|..+|.+.+..+-.+..++|+|||.+|||++- ..+++++++.... --+|+++||.+|++|+...+...+.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLResD~--------~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRESDS--------DVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhhcCC--------CEEEEecchHHHhhhhhHHHHHhhc
Confidence 588999999999999999999999999999863 3455666654322 1489999999999999988888774
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHH
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~ 560 (633)
...-.+...+.|......++. .-.|+|+|+-|+.|..+|............|++||+||+|++....-...++.++.
T Consensus 582 ~~t~~rg~sl~g~ltqEYsin---p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 582 TKTFLRGVSLLGDLTQEYSIN---PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred cCccccchhhHhhhhHHhcCC---chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 332233333444433222221 23589999999999998876433345678999999999999987665666667776
Q ss_pred HCCCCCcEEEEeccCChhh
Q 006737 561 CLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 561 ~lpk~~Q~IlfSATl~~el 579 (633)
.++ |.++++|||+.+..
T Consensus 659 li~--CP~L~LSATigN~~ 675 (1330)
T KOG0949|consen 659 LIP--CPFLVLSATIGNPN 675 (1330)
T ss_pred hcC--CCeeEEecccCCHH
Confidence 664 89999999998873
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.30 E-value=1e-10 Score=121.98 Aligned_cols=148 Identities=20% Similarity=0.231 Sum_probs=111.9
Q ss_pred CCcHHHHHHHHH----HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSA----CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 401 ~pt~iQ~~aIp~----il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
++++.|+.+-.. +.+.+++|+.|-||+|||.. +.+.++..++.+ .++.|.+|....|.+++.+++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~G----------~~vciASPRvDVclEl~~Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQG----------GRVCIASPRVDVCLELYPRLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhcC----------CeEEEecCcccchHHHHHHHH
Confidence 689999877655 44568999999999999974 556676666653 368899999999999999998
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHH
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~ 556 (633)
..+. +..+.+++|+...... .+++|||..+|+++-. .+++|||||+|..--..-.....
T Consensus 166 ~aF~---~~~I~~Lyg~S~~~fr--------~plvVaTtHQLlrFk~----------aFD~liIDEVDAFP~~~d~~L~~ 224 (441)
T COG4098 166 QAFS---NCDIDLLYGDSDSYFR--------APLVVATTHQLLRFKQ----------AFDLLIIDEVDAFPFSDDQSLQY 224 (441)
T ss_pred Hhhc---cCCeeeEecCCchhcc--------ccEEEEehHHHHHHHh----------hccEEEEeccccccccCCHHHHH
Confidence 8875 5678899998775431 5899999999987643 46789999999876332222222
Q ss_pred HHHHHCCCCCcEEEEeccCChhhh
Q 006737 557 NIVDCLPRRRQSLLFSATMPKELV 580 (633)
Q Consensus 557 ~Il~~lpk~~Q~IlfSATl~~el~ 580 (633)
.+-+...+.--+|++|||-++++.
T Consensus 225 Av~~ark~~g~~IylTATp~k~l~ 248 (441)
T COG4098 225 AVKKARKKEGATIYLTATPTKKLE 248 (441)
T ss_pred HHHHhhcccCceEEEecCChHHHH
Confidence 333444556789999999998864
No 100
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.28 E-value=3.2e-11 Score=143.88 Aligned_cols=98 Identities=24% Similarity=0.299 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEE
Q 006737 386 ISPLTIKALTAAGYIQMTRVQEATLS----ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461 (633)
Q Consensus 386 L~~~Ll~~L~~~g~~~pt~iQ~~aIp----~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLIL 461 (633)
+++.+...+...||+ +++.|.+.+. .+..++++++.||||+|||++|++|++.... .. .++||.
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~----------~~vvi~ 298 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TE----------KPVVIS 298 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CC----------CeEEEE
Confidence 345677788888886 7899998665 5667899999999999999999999987654 11 259999
Q ss_pred cccHHHHHHHHH-HHHHHHhcCC-CceEEEEECCcc
Q 006737 462 CPTRELASQIAA-EAIALLKNHD-GIGVLTLVGGTR 495 (633)
Q Consensus 462 vPTReLa~Qi~~-~l~~l~~~~~-~i~v~~l~Gg~~ 495 (633)
+||++|+.|++. .+..+.+... .+++.++.|+..
T Consensus 299 t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ 334 (850)
T TIGR01407 299 TNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSN 334 (850)
T ss_pred eCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchh
Confidence 999999999875 4554443321 367777776543
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.27 E-value=1.6e-11 Score=141.27 Aligned_cols=176 Identities=20% Similarity=0.187 Sum_probs=132.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHH--HHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcc
Q 006737 386 ISPLTIKALTAAGYIQMTRVQEATL--SACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (633)
Q Consensus 386 L~~~Ll~~L~~~g~~~pt~iQ~~aI--p~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvP 463 (633)
++....-.....|...++.+|.+|+ |.++.++|+|+.+||+.|||++.-|-++..++.... .++.+.|
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr----------~~llilp 277 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR----------NVLLILP 277 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh----------ceeEecc
Confidence 3333344445578999999999998 668889999999999999999998888877766543 3888889
Q ss_pred cHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecc
Q 006737 464 TRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543 (633)
Q Consensus 464 TReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEA 543 (633)
....+..-...+..++... |+.|-+++|........ + .-++.|||-++-..++..-.. .-.+..+.+|||||.
T Consensus 278 ~vsiv~Ek~~~l~~~~~~~-G~~ve~y~g~~~p~~~~---k--~~sv~i~tiEkanslin~lie-~g~~~~~g~vvVdEl 350 (1008)
T KOG0950|consen 278 YVSIVQEKISALSPFSIDL-GFPVEEYAGRFPPEKRR---K--RESVAIATIEKANSLINSLIE-QGRLDFLGMVVVDEL 350 (1008)
T ss_pred eeehhHHHHhhhhhhcccc-CCcchhhcccCCCCCcc---c--ceeeeeeehHhhHhHHHHHHh-cCCccccCcEEEeee
Confidence 8888888777777776655 78888887665533211 1 248999999887665543211 134778999999999
Q ss_pred cccCCcChHHHHHHHHHHC-----CCCCcEEEEeccCChh
Q 006737 544 DHLLDLGFRKDVENIVDCL-----PRRRQSLLFSATMPKE 578 (633)
Q Consensus 544 D~Lld~gf~~~l~~Il~~l-----pk~~Q~IlfSATl~~e 578 (633)
|.+.+.+....++.++..+ ....|+|+||||++|-
T Consensus 351 hmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 351 HMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred eeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh
Confidence 9999998888877776532 2346799999999987
No 102
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.27 E-value=2.4e-10 Score=129.00 Aligned_cols=168 Identities=20% Similarity=0.266 Sum_probs=127.7
Q ss_pred CCCHHHHHHH-HHcCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 385 GISPLTIKAL-TAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 385 ~L~~~Ll~~L-~~~g~~~pt~iQ~~aIp~il~g------rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
.....+++.+ ....| ++|.-|+.++..|... .+=++++--|||||++.++.++..+... .+
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-----------~Q 313 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-----------YQ 313 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-----------Ce
Confidence 3445555555 44555 8999999999998864 3568999999999999999998876443 36
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchH---HHHHHhcCCCcEEEECchhhHHHHhcccCcccccCC
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~---~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~ 534 (633)
+..++||--||.|-++.+.+++... ++.|..++|...-.. ....+.++..+|+|+|-.-+ .. ...+++
T Consensus 314 ~ALMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi----Qd----~V~F~~ 384 (677)
T COG1200 314 AALMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI----QD----KVEFHN 384 (677)
T ss_pred eEEeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh----hc----ceeecc
Confidence 8999999999999999999999876 799999999876554 34566677899999995433 32 367889
Q ss_pred eeEEEEecccccCCcChHHHHHHHHHHCCC-CCcEEEEeccCChh
Q 006737 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPR-RRQSLLFSATMPKE 578 (633)
Q Consensus 535 l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk-~~Q~IlfSATl~~e 578 (633)
+.++||||-|++. -.=+..+..-.. ..-+++||||-=+-
T Consensus 385 LgLVIiDEQHRFG-----V~QR~~L~~KG~~~Ph~LvMTATPIPR 424 (677)
T COG1200 385 LGLVIIDEQHRFG-----VHQRLALREKGEQNPHVLVMTATPIPR 424 (677)
T ss_pred eeEEEEecccccc-----HHHHHHHHHhCCCCCcEEEEeCCCchH
Confidence 9999999999954 233333333333 56799999996443
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=1.4e-11 Score=143.41 Aligned_cols=130 Identities=22% Similarity=0.226 Sum_probs=102.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.|+++|.-.--.+..|+ |+.++||.|||++|.+|++...+... .|.||+|+.+||.+..+.+..++.
T Consensus 82 ~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~-----------~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 82 RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGK-----------GVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCC-----------CEEEEeCCHHHHHHHHHHHHHHHH
Confidence 57778876555555554 89999999999999999987665432 399999999999999999999998
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccCcc---cccCCeeEEEEecccccC
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSGLS---VRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~~~---~~Ls~l~~LVIDEAD~Ll 547 (633)
++ ++.|.++.++.... .......|||+++||+.| .++|...-... .....+.++||||||.+|
T Consensus 149 ~l-Glsv~~i~~~~~~~---~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 149 FL-GLTVGINVAGLGQQ---EKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred hc-CCeEEEecCCCCHH---HHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 76 99999999987753 233344589999999999 88886551111 123778999999999887
No 104
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.21 E-value=1.3e-10 Score=140.82 Aligned_cols=162 Identities=17% Similarity=0.188 Sum_probs=105.4
Q ss_pred CCcHHHHHHHHHHh----C-CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACL----E-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 401 ~pt~iQ~~aIp~il----~-grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.++++|..||..+. . .+.+|++++||||||++. +.++..+++... ..++|||+|+++|+.|..+.|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~~--------~~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAKR--------FRRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcCc--------cCeEEEEecHHHHHHHHHHHH
Confidence 58999999998775 2 368999999999999874 345555554321 136999999999999999988
Q ss_pred HHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccC--cccccCCeeEEEEecccccCC-----
Q 006737 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG--LSVRLMGLKMLVLDEADHLLD----- 548 (633)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~--~~~~Ls~l~~LVIDEAD~Lld----- 548 (633)
..+.... ...+..+++.... ..........|+|+|...|...+..... ....+..+++|||||||+-..
T Consensus 484 ~~~~~~~-~~~~~~i~~i~~L---~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~ 559 (1123)
T PRK11448 484 KDTKIEG-DQTFASIYDIKGL---EDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEM 559 (1123)
T ss_pred Hhccccc-ccchhhhhchhhh---hhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccc
Confidence 8763211 1111111111111 1111223468999999998776532211 113467788999999998531
Q ss_pred ----c------ChHHHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 549 ----L------GFRKDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 549 ----~------gf~~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
. .+...+..++..+ +.-.|+||||.-.
T Consensus 560 ~~~~~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r 596 (1123)
T PRK11448 560 SEGELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPAL 596 (1123)
T ss_pred ccchhccchhhhHHHHHHHHHhhc--CccEEEEecCCcc
Confidence 0 1246677777765 3568999999753
No 105
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=1e-10 Score=135.24 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=103.9
Q ss_pred CCCcHHHHHHHHHHhC-C--CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLE-G--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~-g--rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
..++++|.+++..++. | +..++++|||+|||+..+..+ ..+ . -++|||||+..|+.|..+++.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l---~----------k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV---K----------KSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh---C----------CCEEEEeCcHHHHHHHHHHHH
Confidence 3689999999999874 4 378999999999999865433 222 1 138999999999999999999
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccC-----cccccCCeeEEEEecccccCCcCh
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG-----LSVRLMGLKMLVLDEADHLLDLGF 551 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~-----~~~~Ls~l~~LVIDEAD~Lld~gf 551 (633)
+++.. ....+..++|+..... .....|+|+|...+.....+... ..+.-....+||+||||++..
T Consensus 320 ~~~~l-~~~~I~~~tg~~k~~~------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--- 389 (732)
T TIGR00603 320 MWSTI-DDSQICRFTSDAKERF------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--- 389 (732)
T ss_pred HhcCC-CCceEEEEecCccccc------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---
Confidence 87532 2455666666543211 12258999999876532211100 001123577999999999864
Q ss_pred HHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 552 RKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 552 ~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
..+..++..+. ....++||||.-.+
T Consensus 390 -~~fr~il~~l~-a~~RLGLTATP~Re 414 (732)
T TIGR00603 390 -AMFRRVLTIVQ-AHCKLGLTATLVRE 414 (732)
T ss_pred -HHHHHHHHhcC-cCcEEEEeecCccc
Confidence 34555666664 34579999998643
No 106
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.17 E-value=2.7e-10 Score=130.45 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=58.4
Q ss_pred HHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH-hcC-CCc
Q 006737 408 ATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL-KNH-DGI 485 (633)
Q Consensus 408 ~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~-~~~-~~i 485 (633)
.+...+..++.+++.|+||+|||++|++|++..+.... +.++||++||++|+.|+++.+..+. +.. ..+
T Consensus 8 ~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~---------~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i 78 (636)
T TIGR03117 8 NCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERP---------DQKIAIAVPTLALMGQLWSELERLTAEGLAGPV 78 (636)
T ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhcc---------CceEEEECCcHHHHHHHHHHHHHHHHhhcCCCe
Confidence 34455667889999999999999999999998765321 2369999999999999999888776 322 145
Q ss_pred eEEEEECC
Q 006737 486 GVLTLVGG 493 (633)
Q Consensus 486 ~v~~l~Gg 493 (633)
++.++.|+
T Consensus 79 ~~~~lkGr 86 (636)
T TIGR03117 79 QAGFFPGS 86 (636)
T ss_pred eEEEEECC
Confidence 55555554
No 107
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.17 E-value=8.1e-10 Score=129.44 Aligned_cols=152 Identities=22% Similarity=0.236 Sum_probs=107.2
Q ss_pred HHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCc
Q 006737 406 QEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI 485 (633)
Q Consensus 406 Q~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i 485 (633)
..+.+.++.+.+-+||+|+||||||. ++|.+ ++...... .-.+.++.|.|-.|..+.+.+-+.+....|-
T Consensus 55 ~~~i~~ai~~~~vvii~getGsGKTT--qlP~~--lle~g~~~------~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 55 RDEILKAIEQNQVVIIVGETGSGKTT--QLPQF--LLEEGLGI------AGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHhCCEEEEeCCCCCChHH--HHHHH--HHhhhccc------CCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 34455566677789999999999999 66654 44443211 1247789999988888888777666543343
Q ss_pred eEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccC-CcChH-HHHHHHHHHCC
Q 006737 486 GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL-DLGFR-KDVENIVDCLP 563 (633)
Q Consensus 486 ~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Ll-d~gf~-~~l~~Il~~lp 563 (633)
.|+.-+-. .........|-++|.|.|+..+.++ ..|+.+++|||||||.-+ +.+|. ..+..++...+
T Consensus 125 ~VGY~iRf-------e~~~s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr 193 (845)
T COG1643 125 TVGYSIRF-------ESKVSPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR 193 (845)
T ss_pred eeeEEEEe-------eccCCCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC
Confidence 34322211 1112234689999999999999876 569999999999999654 44443 34455677777
Q ss_pred CCCcEEEEeccCChh
Q 006737 564 RRRQSLLFSATMPKE 578 (633)
Q Consensus 564 k~~Q~IlfSATl~~e 578 (633)
.+..+|+||||+..+
T Consensus 194 ~DLKiIimSATld~~ 208 (845)
T COG1643 194 DDLKLIIMSATLDAE 208 (845)
T ss_pred CCceEEEEecccCHH
Confidence 789999999999988
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.14 E-value=1.3e-09 Score=126.51 Aligned_cols=135 Identities=24% Similarity=0.305 Sum_probs=100.5
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 398 g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
|+ .|...|+....-++.|++.-+.||||.|||.--++.. ++-... +-+++||+||..|+.|+++.+..
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~s---l~~a~k--------gkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMS---LYLAKK--------GKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHH---HHHHhc--------CCeEEEEecCHHHHHHHHHHHHH
Confidence 44 8999999999999999999999999999997433322 222211 13699999999999999999999
Q ss_pred HHhcCCCceEEE-EECCccchH---HHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCc
Q 006737 478 LLKNHDGIGVLT-LVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (633)
Q Consensus 478 l~~~~~~i~v~~-l~Gg~~~~~---~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~ 549 (633)
+.....+..+.+ +++..+.+. ..+.+.++..||+|+|..-|...+..-. --++++|++|.+|.++..
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~-----~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS-----KLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc-----ccCCCEEEEccHHHHHhc
Confidence 986654344444 555544333 3456777889999999888776654331 126789999999998853
No 109
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.12 E-value=3.1e-10 Score=134.49 Aligned_cols=85 Identities=26% Similarity=0.384 Sum_probs=64.9
Q ss_pred cCCCCCcHHHHHHHHH----HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSA----CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~----il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~ 472 (633)
.|| ++++.|.+.... +..+..+++.|+||+|||++|++|++... . +.++||++||++|+.|+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~--~----------~~~vvI~t~T~~Lq~Ql~ 308 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS--D----------QRQIIVSVPTKILQDQIM 308 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc--C----------CCcEEEEeCcHHHHHHHH
Confidence 355 688999885544 44578999999999999999999988653 1 246999999999999995
Q ss_pred -HHHHHHHhcCCCceEEEEECCcc
Q 006737 473 -AEAIALLKNHDGIGVLTLVGGTR 495 (633)
Q Consensus 473 -~~l~~l~~~~~~i~v~~l~Gg~~ 495 (633)
+.+..+.+.. ++.+.++.|+..
T Consensus 309 ~~~i~~l~~~~-~~~~~~~kg~~~ 331 (820)
T PRK07246 309 AEEVKAIQEVF-HIDCHSLKGPQN 331 (820)
T ss_pred HHHHHHHHHhc-CCcEEEEECCcc
Confidence 5666665543 677777777654
No 110
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.11 E-value=5.9e-10 Score=122.35 Aligned_cols=187 Identities=21% Similarity=0.168 Sum_probs=114.7
Q ss_pred CCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCc----eEEEEEC--------------CccchHHHHHHhcC--
Q 006737 447 SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI----GVLTLVG--------------GTRFKVDQRRLESD-- 506 (633)
Q Consensus 447 ~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i----~v~~l~G--------------g~~~~~~~~~l~~~-- 506 (633)
..++|+.++|+||||+|+|..|.++++.+..++.....+ +...-+| ......+...+..+
T Consensus 29 ~~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~ 108 (442)
T PF06862_consen 29 EFRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNN 108 (442)
T ss_pred hhhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCc
Confidence 456789999999999999999999999998887431000 0000011 00111122222221
Q ss_pred ----------------------CCcEEEECchhhHHHHhcc---cCcccccCCeeEEEEecccccC--CcChHHHHHHHH
Q 006737 507 ----------------------PCQILVATPGRLLDHIENK---SGLSVRLMGLKMLVLDEADHLL--DLGFRKDVENIV 559 (633)
Q Consensus 507 ----------------------~~dILIaTPgrLl~lL~~~---~~~~~~Ls~l~~LVIDEAD~Ll--d~gf~~~l~~Il 559 (633)
.+|||||+|..|...+... ....-.|++|+++|||.||.|+ +|.+...+...+
T Consensus 109 DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~l 188 (442)
T PF06862_consen 109 DDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHL 188 (442)
T ss_pred cceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHh
Confidence 5799999999999999852 1222359999999999999887 455555555555
Q ss_pred HHCCCC---------------------CcEEEEeccCChhhh-cc-------ccceEeeeccc---cccccCccceEEEe
Q 006737 560 DCLPRR---------------------RQSLLFSATMPKELV-LK-------REHTYIDTVGL---GSVETPVKVSKYNI 607 (633)
Q Consensus 560 ~~lpk~---------------------~Q~IlfSATl~~el~-l~-------~~~~~i~~~~~---~~~~~~~~V~q~~i 607 (633)
+..|++ +|+|+||+..++++. +. ...+.+..... ........|+|.+.
T Consensus 189 N~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~ 268 (442)
T PF06862_consen 189 NLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQ 268 (442)
T ss_pred ccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEE
Confidence 555542 899999999999852 11 11111111111 11234556777766
Q ss_pred ehh------------------hHHHHh-hcCCceEEEEEccccCC
Q 006737 608 YVF------------------VLVLSI-KIQAFYIICFVYTISMY 633 (633)
Q Consensus 608 ~v~------------------~l~~~~-k~~~~~~LVFcnT~s~~ 633 (633)
-+. ++-.+. ......+||||+|.-.|
T Consensus 269 r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDf 313 (442)
T PF06862_consen 269 RFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDF 313 (442)
T ss_pred EecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhh
Confidence 421 222222 34456899999997554
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.09 E-value=1.6e-09 Score=125.27 Aligned_cols=153 Identities=26% Similarity=0.303 Sum_probs=115.9
Q ss_pred CCCcHHHHHHHHHHhCC----CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEG----KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~g----rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
..+++-|..++..|... .-.++.+.||||||.+|+= ++...+..+. +||||+|-++|..|+.+.|
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~-~i~~~L~~Gk----------qvLvLVPEI~Ltpq~~~rf 265 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLE-AIAKVLAQGK----------QVLVLVPEIALTPQLLARF 265 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHH-HHHHHHHcCC----------EEEEEeccccchHHHHHHH
Confidence 36788999999998765 5789999999999999864 5555555432 5999999999999999999
Q ss_pred HHHHhcCCCceEEEEECCccchH---HHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCC---c
Q 006737 476 IALLKNHDGIGVLTLVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD---L 549 (633)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~---~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld---~ 549 (633)
+..+ +.++.+++++.+... .+.....+...|+|+|=..| ...+.++.+|||||-|.-.- .
T Consensus 266 ~~rF----g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl----------F~Pf~~LGLIIvDEEHD~sYKq~~ 331 (730)
T COG1198 266 KARF----GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL----------FLPFKNLGLIIVDEEHDSSYKQED 331 (730)
T ss_pred HHHh----CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----------cCchhhccEEEEeccccccccCCc
Confidence 9998 467888888876544 45566678899999994333 35688999999999997652 1
Q ss_pred C---hHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 550 G---FRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 550 g---f~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
+ +..++-...... .++++|+-|||-+-+
T Consensus 332 ~prYhARdvA~~Ra~~-~~~pvvLgSATPSLE 362 (730)
T COG1198 332 GPRYHARDVAVLRAKK-ENAPVVLGSATPSLE 362 (730)
T ss_pred CCCcCHHHHHHHHHHH-hCCCEEEecCCCCHH
Confidence 2 333333333333 478999999999877
No 112
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.06 E-value=1.5e-09 Score=127.07 Aligned_cols=157 Identities=21% Similarity=0.239 Sum_probs=115.5
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHH--HHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI--EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 402 pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL--~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
....+...|.+|.+.+.++|+|.||+|||. ++|.+ ......+ ..+.+|+..|.|-.|..+++++..--
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTT--QvpQfiLd~~~~~~--------~~~~IicTQPRRIsAIsvAeRVa~ER 243 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTT--QVPQFILDEAIESG--------AACNIICTQPRRISAISVAERVAKER 243 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchh--hhhHHHHHHHHhcC--------CCCeEEecCCchHHHHHHHHHHHHHh
Confidence 456788889999999999999999999998 56544 3322222 34568999999999988887775554
Q ss_pred hcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccC-CcChHHHHHHH
Q 006737 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL-DLGFRKDVENI 558 (633)
Q Consensus 480 ~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Ll-d~gf~~~l~~I 558 (633)
....+-.|+.-.+..+. ......+++||.|.|++.|... ..+..+.+||+||+|.-. +.+|.-.+.+.
T Consensus 244 ~~~~g~~VGYqvrl~~~-------~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~DflLi~lk~ 312 (924)
T KOG0920|consen 244 GESLGEEVGYQVRLESK-------RSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINTDFLLILLKD 312 (924)
T ss_pred ccccCCeeeEEEeeecc-------cCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCcccHHHHHHH
Confidence 33334333332222111 1223689999999999999774 568899999999999765 55677777777
Q ss_pred HHHCCCCCcEEEEeccCChhh
Q 006737 559 VDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 559 l~~lpk~~Q~IlfSATl~~el 579 (633)
+-..+++.++|+||||+..+.
T Consensus 313 lL~~~p~LkvILMSAT~dae~ 333 (924)
T KOG0920|consen 313 LLPRNPDLKVILMSATLDAEL 333 (924)
T ss_pred HhhhCCCceEEEeeeecchHH
Confidence 666678999999999999873
No 113
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.04 E-value=6.7e-10 Score=130.51 Aligned_cols=170 Identities=21% Similarity=0.186 Sum_probs=108.6
Q ss_pred CcHHHHHHHHHHhCC---C-cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 402 MTRVQEATLSACLEG---K-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 402 pt~iQ~~aIp~il~g---r-DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
..+.|..++..++.. . .+++.||||+|||.+.+++++..+.... ....+++++.|++.++.++++.++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~-------~~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI-------KLKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc-------cccceEEEEccHHHHHHHHHHHHHh
Confidence 488898888887753 3 7889999999999999999887765521 1234799999999999999999998
Q ss_pred HHhcCCCceEEEEECCccchHHHH-------------HHhcCCCcEEEECchhhHHHHhcccCccc-ccCCeeEEEEecc
Q 006737 478 LLKNHDGIGVLTLVGGTRFKVDQR-------------RLESDPCQILVATPGRLLDHIENKSGLSV-RLMGLKMLVLDEA 543 (633)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~-------------~l~~~~~dILIaTPgrLl~lL~~~~~~~~-~Ls~l~~LVIDEA 543 (633)
.+... .+.....+|......... .....-..++++||-.+............ .+-...++|+||+
T Consensus 269 ~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~ 347 (733)
T COG1203 269 IFGLF-SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEV 347 (733)
T ss_pred hhccc-ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccH
Confidence 87543 111111233322111100 01111235666676666553322221111 1113468999999
Q ss_pred cccCCcChHHHHHHHHHHCC-CCCcEEEEeccCChhh
Q 006737 544 DHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKEL 579 (633)
Q Consensus 544 D~Lld~gf~~~l~~Il~~lp-k~~Q~IlfSATl~~el 579 (633)
|.+.+......+..++..+. .+..+|++|||+|+.+
T Consensus 348 h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~ 384 (733)
T COG1203 348 HLYADETMLAALLALLEALAEAGVPVLLMSATLPPFL 384 (733)
T ss_pred HhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHH
Confidence 99987644444445544443 3688999999999984
No 114
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.04 E-value=1.9e-09 Score=125.51 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=95.9
Q ss_pred CcHHHHHHHHHHh----C------CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH
Q 006737 402 MTRVQEATLSACL----E------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (633)
Q Consensus 402 pt~iQ~~aIp~il----~------grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi 471 (633)
+...|..|+..+. . .+..+++.+||||||++.+.-+ ..+.... ..+++|||+|+.+|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la-~~l~~~~--------~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA-RKALELL--------KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-HHHHhhc--------CCCeEEEEECcHHHHHHH
Confidence 6778888776643 2 2479999999999998765433 3333221 235799999999999999
Q ss_pred HHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccC-cccccCCeeEEEEecccccCCcC
Q 006737 472 AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG-LSVRLMGLKMLVLDEADHLLDLG 550 (633)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~-~~~~Ls~l~~LVIDEAD~Lld~g 550 (633)
.+.+..+.... + .+..+...-...+......|+|+|...|...+..... ......++ +||+||||+....
T Consensus 310 ~~~f~~~~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~-lvIvDEaHrs~~~- 380 (667)
T TIGR00348 310 MKEFQSLQKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEV-VVIFDEAHRSQYG- 380 (667)
T ss_pred HHHHHhhCCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCE-EEEEEcCccccch-
Confidence 99998875311 0 1111112222334444468999999999864432110 00111122 8999999996533
Q ss_pred hHHHHHHHH-HHCCCCCcEEEEeccCC
Q 006737 551 FRKDVENIV-DCLPRRRQSLLFSATMP 576 (633)
Q Consensus 551 f~~~l~~Il-~~lpk~~Q~IlfSATl~ 576 (633)
.+..++ ..+| +...++||||.-
T Consensus 381 ---~~~~~l~~~~p-~a~~lGfTaTP~ 403 (667)
T TIGR00348 381 ---ELAKNLKKALK-NASFFGFTGTPI 403 (667)
T ss_pred ---HHHHHHHhhCC-CCcEEEEeCCCc
Confidence 233333 3454 578999999984
No 115
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.01 E-value=8.5e-09 Score=122.34 Aligned_cols=169 Identities=20% Similarity=0.193 Sum_probs=125.8
Q ss_pred cCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhC----C--CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 384 CGISPLTIKALTA-AGYIQMTRVQEATLSACLE----G--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 384 l~L~~~Ll~~L~~-~g~~~pt~iQ~~aIp~il~----g--rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
+..+......+.. ++| .-|+=|..||..+.. + .|=|+||--|-|||.+.+=.++..+... .
T Consensus 577 f~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-----------K 644 (1139)
T COG1197 577 FPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-----------K 644 (1139)
T ss_pred CCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-----------C
Confidence 3344555555555 344 569999999999875 3 3899999999999998877777665443 4
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchH---HHHHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~---~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
+|.|||||--||.|-++.|++.++.+ .++|..+.-=.+.++ -.+.++.+..||||+| ..+|... +.++
T Consensus 645 QVAvLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT----HrLL~kd----v~Fk 715 (1139)
T COG1197 645 QVAVLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT----HRLLSKD----VKFK 715 (1139)
T ss_pred eEEEEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEec----hHhhCCC----cEEe
Confidence 69999999999999999999999877 577777655444333 3456777899999999 3455443 6789
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
++.+|||||-|+..- ...+.+..+ ..+.-++-||||-=+-
T Consensus 716 dLGLlIIDEEqRFGV-k~KEkLK~L----r~~VDvLTLSATPIPR 755 (1139)
T COG1197 716 DLGLLIIDEEQRFGV-KHKEKLKEL----RANVDVLTLSATPIPR 755 (1139)
T ss_pred cCCeEEEechhhcCc-cHHHHHHHH----hccCcEEEeeCCCCcc
Confidence 999999999999653 244444444 4566799999995433
No 116
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.00 E-value=1.3e-08 Score=114.38 Aligned_cols=149 Identities=22% Similarity=0.213 Sum_probs=102.4
Q ss_pred HHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCc
Q 006737 406 QEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI 485 (633)
Q Consensus 406 Q~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i 485 (633)
-.+.+..+..++-+||.|.||||||. ++|-+ +.+.+.... + ++.+..|.|-.|..+++++..-.....|-
T Consensus 56 r~~il~~ve~nqvlIviGeTGsGKST--QipQy--L~eaG~~~~-----g-~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 56 RDQILYAVEDNQVLIVIGETGSGKST--QIPQY--LAEAGFASS-----G-KIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHCCEEEEEcCCCCCccc--cHhHH--HHhcccccC-----C-cEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 35566677788899999999999998 78865 655543221 2 26799999999888887765554333233
Q ss_pred eEEE--EECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHC-
Q 006737 486 GVLT--LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL- 562 (633)
Q Consensus 486 ~v~~--l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~l- 562 (633)
.|+. -+.+.. .....|.++|.|.|++.+..+ ..|+..++|||||||.-.- .-+.+..+++.+
T Consensus 126 ~VGY~IRFed~t---------s~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHERsl--~TDiLlGlLKki~ 190 (674)
T KOG0922|consen 126 EVGYTIRFEDST---------SKDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHERSL--HTDILLGLLKKIL 190 (674)
T ss_pred eeeeEEEecccC---------CCceeEEEecchHHHHHHhcC----CccccccEEEEechhhhhh--HHHHHHHHHHHHH
Confidence 3332 222221 223689999999999988765 5689999999999997542 123333333322
Q ss_pred --CCCCcEEEEeccCChhh
Q 006737 563 --PRRRQSLLFSATMPKEL 579 (633)
Q Consensus 563 --pk~~Q~IlfSATl~~el 579 (633)
+++..+|++|||+..+.
T Consensus 191 ~~R~~LklIimSATlda~k 209 (674)
T KOG0922|consen 191 KKRPDLKLIIMSATLDAEK 209 (674)
T ss_pred hcCCCceEEEEeeeecHHH
Confidence 24678999999999874
No 117
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.97 E-value=2.1e-09 Score=126.27 Aligned_cols=156 Identities=15% Similarity=0.261 Sum_probs=122.2
Q ss_pred CCCCcHHHHHHHHHHhCC-CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~g-rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
|....++|.++++.+.+. .+|++++|+|||||.|.-+.++. . .+-.+++++.|..+.+..++..+.+
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~--------~~~~~~vyi~p~~~i~~~~~~~w~~ 1208 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----P--------DTIGRAVYIAPLEEIADEQYRDWEK 1208 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----C--------ccceEEEEecchHHHHHHHHHHHHH
Confidence 334589999999998775 57999999999999998887764 1 2235799999999999999999988
Q ss_pred HHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcC------h
Q 006737 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG------F 551 (633)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~g------f 551 (633)
.+....|+.+..+.|...... +.+.. .+|||+||+++-.+ . ....+++.|.||+|.+.+.. .
T Consensus 1209 ~f~~~~G~~~~~l~ge~s~~l--kl~~~--~~vii~tpe~~d~l-q-------~iQ~v~l~i~d~lh~igg~~g~v~evi 1276 (1674)
T KOG0951|consen 1209 KFSKLLGLRIVKLTGETSLDL--KLLQK--GQVIISTPEQWDLL-Q-------SIQQVDLFIVDELHLIGGVYGAVYEVI 1276 (1674)
T ss_pred hhccccCceEEecCCccccch--HHhhh--cceEEechhHHHHH-h-------hhhhcceEeeehhhhhcccCCceEEEE
Confidence 888777888888888776542 22322 48999999998554 2 24578899999999998432 2
Q ss_pred HHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 552 RKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 552 ~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
.. +..|-..+-++.+++++|..+++.-
T Consensus 1277 ~S-~r~ia~q~~k~ir~v~ls~~lana~ 1303 (1674)
T KOG0951|consen 1277 CS-MRYIASQLEKKIRVVALSSSLANAR 1303 (1674)
T ss_pred ee-HHHHHHHHHhheeEEEeehhhccch
Confidence 23 6677777778899999999998873
No 118
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.91 E-value=1e-08 Score=107.86 Aligned_cols=73 Identities=19% Similarity=0.164 Sum_probs=57.6
Q ss_pred CCcHHHHH----HHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 401 QMTRVQEA----TLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 401 ~pt~iQ~~----aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.|+|.|.+ ++..+..|.++++.||||+|||++|++|++..+....... .+.+++|+++|..+..|....++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-----~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-----QKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-----cccceeEEeccHHHHHHHHHHHH
Confidence 36999998 5555667899999999999999999999998766543210 12469999999999999877776
Q ss_pred HH
Q 006737 477 AL 478 (633)
Q Consensus 477 ~l 478 (633)
++
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 119
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.91 E-value=1e-08 Score=107.86 Aligned_cols=73 Identities=19% Similarity=0.164 Sum_probs=57.6
Q ss_pred CCcHHHHH----HHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 401 QMTRVQEA----TLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 401 ~pt~iQ~~----aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.|+|.|.+ ++..+..|.++++.||||+|||++|++|++..+....... .+.+++|+++|..+..|....++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-----~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-----QKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-----cccceeEEeccHHHHHHHHHHHH
Confidence 36999998 5555667899999999999999999999998766543210 12469999999999999877776
Q ss_pred HH
Q 006737 477 AL 478 (633)
Q Consensus 477 ~l 478 (633)
++
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 120
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.90 E-value=1.1e-08 Score=123.34 Aligned_cols=82 Identities=27% Similarity=0.310 Sum_probs=59.8
Q ss_pred CCcHHHHHHHHH----HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHH--
Q 006737 401 QMTRVQEATLSA----CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE-- 474 (633)
Q Consensus 401 ~pt~iQ~~aIp~----il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~-- 474 (633)
++++-|.+.+.. +..++.+++.|+||+|||++|++|++....... -++||-++|+.|..|+...
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~----------~~vvIsT~T~~LQ~Ql~~kDi 326 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKE----------EPVVISTYTIQLQQQLLEKDI 326 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccC----------CeEEEEcCCHHHHHHHHHhhH
Confidence 789999886654 445789999999999999999999986543322 2599999999999998763
Q ss_pred --HHHHHhcCCCceEEEEECCc
Q 006737 475 --AIALLKNHDGIGVLTLVGGT 494 (633)
Q Consensus 475 --l~~l~~~~~~i~v~~l~Gg~ 494 (633)
+.+++.. .++++++.|..
T Consensus 327 P~L~~~~~~--~~~~~~lKGr~ 346 (928)
T PRK08074 327 PLLQKIFPF--PVEAALLKGRS 346 (928)
T ss_pred HHHHHHcCC--CceEEEEEccc
Confidence 3333321 35555555543
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.84 E-value=1.4e-08 Score=118.78 Aligned_cols=131 Identities=21% Similarity=0.171 Sum_probs=99.1
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
-.|+++|.-.--.+..|+ |+.+.||.|||++..+|++-..+... .|-|++||-.||.+-++.+..++
T Consensus 81 m~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~-----------~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGK-----------GVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCC-----------CEEEEeCCHHHHHHHHHHHHHHh
Confidence 367888876655566664 88999999999999999986655432 48899999999999999999998
Q ss_pred hcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccC---cccccCCeeEEEEecccccC
Q 006737 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 480 ~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~---~~~~Ls~l~~LVIDEAD~Ll 547 (633)
..+ ++.|.++.++........... |||+++|..-| .++|...-. .......+.++||||+|.+|
T Consensus 148 ~~l-Gl~v~~i~~~~~~~err~~Y~---~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 148 EFL-GLSVGIVTPFQPPEEKRAAYA---ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred ccc-CCEEEEECCCCCHHHHHHHhc---CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 876 899999988876554433332 79999999886 344432210 01124788999999999887
No 122
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.78 E-value=2.7e-08 Score=93.67 Aligned_cols=135 Identities=21% Similarity=0.274 Sum_probs=78.3
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCcc
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~ 495 (633)
|+=.++-..+|+|||--.+--++...+.. +.++|||.|||.++..+.+.++.. .+++.. ...
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t---~~~ 65 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR----------RLRVLVLAPTRVVAEEMYEALKGL-----PVRFHT---NAR 65 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHTTTS-----SEEEES---TTS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc----------cCeEEEecccHHHHHHHHHHHhcC-----CcccCc---eee
Confidence 44467889999999987554454444333 247999999999999988776533 222221 000
Q ss_pred chHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcC--hHHHHHHHHHHCCCCCcEEEEec
Q 006737 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG--FRKDVENIVDCLPRRRQSLLFSA 573 (633)
Q Consensus 496 ~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~g--f~~~l~~Il~~lpk~~Q~IlfSA 573 (633)
.. ...++.-|-|+|-..+...+.+. ..+.+.++||+||+|..--.. +...+... ... ..+.+|++||
T Consensus 66 ~~-----~~~g~~~i~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTA 134 (148)
T PF07652_consen 66 MR-----THFGSSIIDVMCHATYGHFLLNP----CRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMTA 134 (148)
T ss_dssp S---------SSSSEEEEEHHHHHHHHHTS----SCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEES
T ss_pred ec-----cccCCCcccccccHHHHHHhcCc----ccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEeC
Confidence 00 11233467889999988877664 346789999999999964322 23333332 222 2467999999
Q ss_pred cCChhh
Q 006737 574 TMPKEL 579 (633)
Q Consensus 574 Tl~~el 579 (633)
|-|-..
T Consensus 135 TPPG~~ 140 (148)
T PF07652_consen 135 TPPGSE 140 (148)
T ss_dssp S-TT--
T ss_pred CCCCCC
Confidence 988653
No 123
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=5.7e-08 Score=113.26 Aligned_cols=131 Identities=23% Similarity=0.244 Sum_probs=100.8
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
..|+++|.-..-.+..|+ |+...||+|||++..+|++...+... .|-|++||--||.|=++.+..++
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~-----------~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK-----------GVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC-----------CeEEEeccHHHHHhhHHHHHHHH
Confidence 378899988777777776 99999999999999999887665543 38899999999999999999999
Q ss_pred hcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccC---cccccCCeeEEEEecccccC
Q 006737 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 480 ~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~---~~~~Ls~l~~LVIDEAD~Ll 547 (633)
..+ ++.|+++.++.......... .|||+++|...| .++|...-. .......+.+.||||||.+|
T Consensus 146 ~~L-Gl~vg~i~~~~~~~~r~~~y---~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 146 RWL-GLTVGLNLNSMSPDEKRAAY---NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred Hhc-CCeEEEeCCCCCHHHHHHHh---cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 877 89999999886655433333 379999999877 344433210 01224567899999999876
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.72 E-value=7.8e-08 Score=110.40 Aligned_cols=130 Identities=21% Similarity=0.220 Sum_probs=100.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.|+++|.-..-.++.|+ |+.+.||.|||++..+|++...+... .|.|++|+-.||.+-++.+..++.
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~-----------~VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGR-----------RVHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCC-----------CeEEEcCCHHHHHHHHHHHHHHHH
Confidence 78999999998888885 78999999999999999986665442 388999999999999999999988
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccC---cccccCCeeEEEEecccccC
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~---~~~~Ls~l~~LVIDEAD~Ll 547 (633)
.+ ++.|+++.++.......... .|||+++|..-| .++|...-. .......+.+.||||+|.+|
T Consensus 145 ~L-GLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 145 AL-GLTVGWITEESTPEERRAAY---ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred hc-CCEEEEECCCCCHHHHHHHH---cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 76 89999998887655333333 379999998876 233322110 01234668899999999876
No 125
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.71 E-value=1.6e-07 Score=105.06 Aligned_cols=156 Identities=21% Similarity=0.195 Sum_probs=102.8
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhc
Q 006737 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (633)
Q Consensus 402 pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~ 481 (633)
..+.-.+.+.++..++-+||.|.||||||. +||.. |...+... .+.++=+..|.|-.|..+..++.+-..-
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQy--L~EaGytk-----~gk~IgcTQPRRVAAmSVAaRVA~EMgv 336 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQY--LYEAGYTK-----GGKKIGCTQPRRVAAMSVAARVAEEMGV 336 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHH--HHhccccc-----CCceEeecCcchHHHHHHHHHHHHHhCc
Confidence 345556777788888899999999999998 88865 55554322 1334668999999998887665444321
Q ss_pred CCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccC-CcC-hHHHHHHHH
Q 006737 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL-DLG-FRKDVENIV 559 (633)
Q Consensus 482 ~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Ll-d~g-f~~~l~~Il 559 (633)
..|-.|+. ++ ..+.......-|-++|.|.|++-+... .+|.+.++|||||||.-- .-+ ....+..|.
T Consensus 337 kLG~eVGY-----sI--RFEdcTSekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL~TDILfgLvKDIa 405 (902)
T KOG0923|consen 337 KLGHEVGY-----SI--RFEDCTSEKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTLHTDILFGLVKDIA 405 (902)
T ss_pred ccccccce-----EE--EeccccCcceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhhhhhHHHHHHHHHH
Confidence 11111111 00 111112233568899999999877665 678999999999999643 221 222333333
Q ss_pred HHCCCCCcEEEEeccCChh
Q 006737 560 DCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 560 ~~lpk~~Q~IlfSATl~~e 578 (633)
...++..+++.|||+..+
T Consensus 406 -r~RpdLKllIsSAT~DAe 423 (902)
T KOG0923|consen 406 -RFRPDLKLLISSATMDAE 423 (902)
T ss_pred -hhCCcceEEeeccccCHH
Confidence 344688999999999887
No 126
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.66 E-value=2.1e-07 Score=104.26 Aligned_cols=155 Identities=20% Similarity=0.187 Sum_probs=102.7
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
+-.....+.+.+..|-.++-|||++.||||||. +||.+ |+..+... .++ +-+..|.|..|..++..+..-
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~Qy--L~edGY~~-----~Gm-IGcTQPRRvAAiSVAkrVa~E 423 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQY--LYEDGYAD-----NGM-IGCTQPRRVAAISVAKRVAEE 423 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHH--HHhccccc-----CCe-eeecCchHHHHHHHHHHHHHH
Confidence 334456677788888888899999999999998 66654 55554432 222 457889999999988777655
Q ss_pred HhcCCCceEE--EEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHH
Q 006737 479 LKNHDGIGVL--TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (633)
Q Consensus 479 ~~~~~~i~v~--~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~ 556 (633)
.....|-.|+ +-+.+ .......|-++|.|.|+.-.-.. ..|....+||+||||.-.-. .+.+.
T Consensus 424 M~~~lG~~VGYsIRFEd---------vT~~~T~IkymTDGiLLrEsL~d----~~L~kYSviImDEAHERslN--tDilf 488 (1042)
T KOG0924|consen 424 MGVTLGDTVGYSIRFED---------VTSEDTKIKYMTDGILLRESLKD----RDLDKYSVIIMDEAHERSLN--TDILF 488 (1042)
T ss_pred hCCccccccceEEEeee---------cCCCceeEEEeccchHHHHHhhh----hhhhheeEEEechhhhcccc--hHHHH
Confidence 4322222221 11111 12233578899999998755433 45889999999999965421 22333
Q ss_pred HHHH---HCCCCCcEEEEeccCChh
Q 006737 557 NIVD---CLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 557 ~Il~---~lpk~~Q~IlfSATl~~e 578 (633)
.|+. .-..+..+|++|||+...
T Consensus 489 Gllk~~larRrdlKliVtSATm~a~ 513 (1042)
T KOG0924|consen 489 GLLKKVLARRRDLKLIVTSATMDAQ 513 (1042)
T ss_pred HHHHHHHHhhccceEEEeeccccHH
Confidence 3333 223478999999999877
No 127
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.66 E-value=2.4e-07 Score=108.53 Aligned_cols=66 Identities=24% Similarity=0.384 Sum_probs=51.4
Q ss_pred CCCCCcHHHHHHHHHHh---CC------CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHH
Q 006737 398 GYIQMTRVQEATLSACL---EG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (633)
Q Consensus 398 g~~~pt~iQ~~aIp~il---~g------rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa 468 (633)
|| ++++-|.+.+..|. ++ +.++|.|+||+|||++|++|++-.....+. ++||-+.|+.|-
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k----------~vVIST~T~~LQ 91 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKK----------KLVISTATVALQ 91 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCC----------eEEEEcCCHHHH
Confidence 44 68899988665544 33 678999999999999999999865443322 599999999999
Q ss_pred HHHHHH
Q 006737 469 SQIAAE 474 (633)
Q Consensus 469 ~Qi~~~ 474 (633)
.|+...
T Consensus 92 eQL~~k 97 (697)
T PRK11747 92 EQLVSK 97 (697)
T ss_pred HHHHhh
Confidence 998643
No 128
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.65 E-value=1.1e-07 Score=109.41 Aligned_cols=152 Identities=19% Similarity=0.176 Sum_probs=101.4
Q ss_pred CCcHHHHHHHHHH----hCCC-cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSAC----LEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 401 ~pt~iQ~~aIp~i----l~gr-DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.++..|..||..+ ..|+ -+|+++.||+|||... +.++..|.+.... -++|+|+-+++|+.|.+..+
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~--------KRVLFLaDR~~Lv~QA~~af 235 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWV--------KRVLFLADRNALVDQAYGAF 235 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchh--------heeeEEechHHHHHHHHHHH
Confidence 5788998888654 4454 5999999999999763 4566667665432 26999999999999999888
Q ss_pred HHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcc-c-CcccccCCeeEEEEecccccCCcChHH
Q 006737 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENK-S-GLSVRLMGLKMLVLDEADHLLDLGFRK 553 (633)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~-~-~~~~~Ls~l~~LVIDEAD~Lld~gf~~ 553 (633)
..+..... .+..+.+. ... ..++|.|+|-..+...+... . ...+....+++|||||||+=. ..
T Consensus 236 ~~~~P~~~--~~n~i~~~-~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~ 300 (875)
T COG4096 236 EDFLPFGT--KMNKIEDK-KGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YS 300 (875)
T ss_pred HHhCCCcc--ceeeeecc-cCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----Hh
Confidence 87765332 22222221 111 13799999999998877654 1 112334458999999999843 33
Q ss_pred HHHHHHHHCCCCCcEEEEeccCChh
Q 006737 554 DVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 554 ~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
....|+.++..- +++++||..+.
T Consensus 301 ~~~~I~dYFdA~--~~gLTATP~~~ 323 (875)
T COG4096 301 EWSSILDYFDAA--TQGLTATPKET 323 (875)
T ss_pred hhHHHHHHHHHH--HHhhccCcccc
Confidence 444666655322 33348887764
No 129
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.64 E-value=1.1e-07 Score=98.62 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=84.0
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCc
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~ 494 (633)
..+.+|++-..|+|||+..+. ++..+........ .-.+|||+|. .+..|...++..++... .+++..+.|..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~~~~-----~~~~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~ 95 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIA-LISYLKNEFPQRG-----EKKTLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDS 95 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHH-HHHHHHHCCTTSS------S-EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSC
T ss_pred CCCCEEEEECCCCCchhhhhh-hhhhhhhcccccc-----ccceeEeecc-chhhhhhhhhccccccc-ccccccccccc
Confidence 346799999999999987554 3334433322110 0138999999 88899999999887432 45666666665
Q ss_pred cchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEecc
Q 006737 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 495 ~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
....... ......+|+|+|...+...........+.-....+|||||+|.+-+. .......+..+. ....+++|||
T Consensus 96 ~~~~~~~-~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~~l~~l~-~~~~~lLSgT 171 (299)
T PF00176_consen 96 ERRRLSK-NQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYKALRKLR-ARYRWLLSGT 171 (299)
T ss_dssp HHHHTTS-SSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHHHHHCCC-ECEEEEE-SS
T ss_pred ccccccc-cccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccccccccc-cceEEeeccc
Confidence 1111111 11234689999999988111000000111234889999999999432 333334444454 5678899999
Q ss_pred CCh
Q 006737 575 MPK 577 (633)
Q Consensus 575 l~~ 577 (633)
.-.
T Consensus 172 P~~ 174 (299)
T PF00176_consen 172 PIQ 174 (299)
T ss_dssp -SS
T ss_pred ccc
Confidence 543
No 130
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.61 E-value=4.8e-07 Score=93.98 Aligned_cols=132 Identities=22% Similarity=0.255 Sum_probs=95.1
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
-..|+++|.-++=.+..|+ |+...||-|||++..+|+.-..+.. ..|=|++..-.||..=++.+..+
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G-----------~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQG-----------KGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTS-----------S-EEEEESSHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhc-----------CCcEEEeccHHHhhccHHHHHHH
Confidence 3479999999988887776 9999999999999888876554433 23889999999999999999999
Q ss_pred HhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhH-HHHhcccCc---ccccCCeeEEEEecccccC
Q 006737 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLL-DHIENKSGL---SVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl-~lL~~~~~~---~~~Ls~l~~LVIDEAD~Ll 547 (633)
+..+ ++.+.+++++........... ++|+++|...|. ++|...-.. ......+.++||||||.++
T Consensus 142 y~~L-Glsv~~~~~~~~~~~r~~~Y~---~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEFL-GLSVGIITSDMSSEERREAYA---ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHT-T--EEEEETTTEHHHHHHHHH---SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHh-hhccccCccccCHHHHHHHHh---CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 8876 999999999887544333332 689999999884 445432111 1124678999999999876
No 131
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.55 E-value=4.3e-07 Score=106.16 Aligned_cols=129 Identities=23% Similarity=0.237 Sum_probs=97.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.|+++|.-.--++..|+ |+.+.||-|||+++.+|+.-..+... .|-||+++-.||..=++.+..+..
T Consensus 85 r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~Gk-----------gVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 85 RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGK-----------GVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCC-----------CeEEEeCCHHHHHhHHHHHHHHHH
Confidence 67788877666666664 89999999999999999875544432 388999999999998888888887
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-----HHHHhcccCcccccCCeeEEEEecccccC
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-----LDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-----l~lL~~~~~~~~~Ls~l~~LVIDEAD~Ll 547 (633)
.+ |+.|+++.++........ ...|||+++|+..| .+.+..... ......+.+.||||||.+|
T Consensus 152 ~L-GLtvg~i~~~~~~~err~---aY~~DItYgTn~e~gFDYLRDnm~~~~~-~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 152 FL-GLSVGLIQQDMSPEERKK---NYACDITYATNSELGFDYLRDNMATDIS-EVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred Hh-CCeEEEECCCCChHHHHH---hcCCCeEEecCCcccccchhhhhccccc-ccccCccceEEEeccccee
Confidence 76 999999887765443222 23589999999988 454433211 1235778899999999876
No 132
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.54 E-value=3.7e-07 Score=106.69 Aligned_cols=133 Identities=21% Similarity=0.179 Sum_probs=96.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.|. .|+++|.-..=++.. .-|+.+.||.|||+++.+|+.-..+.. ..|-||+++..||.+-++.+.
T Consensus 73 lG~-r~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL~G-----------~~VhVvT~NdyLA~RD~e~m~ 138 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNALTG-----------KGVHIVTVNDYLAKRDQEWMG 138 (870)
T ss_pred hCC-CCCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHhcC-----------CceEEEeCCHHHHHHHHHHHH
Confidence 354 478888776555544 469999999999999999996433322 238899999999999999999
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhH-HHHhcccC---cccccCCeeEEEEecccccC
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLL-DHIENKSG---LSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl-~lL~~~~~---~~~~Ls~l~~LVIDEAD~Ll 547 (633)
.+...+ |+.|+++.++.+........ .|||+++|..-|- ++|...-. .......+.+.||||||.+|
T Consensus 139 pvy~~L-GLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 139 QIYRFL-GLTVGLIQEGMSSEERKKNY---LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHc-CCceeeeCCCCChHHHHHhc---CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 998877 89999988877755433332 3799999997552 33322210 01235678899999999876
No 133
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.52 E-value=1.3e-06 Score=105.24 Aligned_cols=156 Identities=13% Similarity=0.190 Sum_probs=103.7
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 401 ~pt~iQ~~aIp~il----~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.+.++|...+..++ +|.+.|++-..|.|||+.. +.++..+...... .+ .+|||||. .+..+..+++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~~~------~g-p~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYRGI------TG-PHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhcCC------CC-CEEEEeCh-HHHHHHHHHHH
Confidence 68899999988765 5778999999999999864 3344444332111 11 37999996 66677888888
Q ss_pred HHHhcCCCceEEEEECCccchHHH--HHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHH
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQ--RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~--~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~ 554 (633)
+++ +.+.+..++|........ ..+.....+|+|+|.+.+...... +.--...+|||||||+|-+. ...
T Consensus 240 kw~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDEAHrIKN~--~Sk 309 (1033)
T PLN03142 240 RFC---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDEAHRIKNE--NSL 309 (1033)
T ss_pred HHC---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcCccccCCH--HHH
Confidence 775 467788888765432221 122334579999999888654321 11224679999999998653 334
Q ss_pred HHHHHHHCCCCCcEEEEeccCC
Q 006737 555 VENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 555 l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
+..++..+.. ...+++|+|.-
T Consensus 310 lskalr~L~a-~~RLLLTGTPl 330 (1033)
T PLN03142 310 LSKTMRLFST-NYRLLITGTPL 330 (1033)
T ss_pred HHHHHHHhhc-CcEEEEecCCC
Confidence 4555555543 34678899964
No 134
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.50 E-value=2e-06 Score=99.98 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=92.8
Q ss_pred cCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchH---HH
Q 006737 424 KTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQ 500 (633)
Q Consensus 424 pTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~---~~ 500 (633)
.+|||||.+|+-. +...+..+. ++|||+|...|+.|+...++..+. +..+..++++.+... .+
T Consensus 168 ~~GSGKTevyl~~-i~~~l~~Gk----------~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 168 LPGEDWARRLAAA-AAATLRAGR----------GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred CCCCcHHHHHHHH-HHHHHHcCC----------eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHH
Confidence 3599999998754 444444322 599999999999999999998873 256788888876554 33
Q ss_pred HHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCC---cC---hHHHHHHHHHHCCCCCcEEEEecc
Q 006737 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD---LG---FRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 501 ~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld---~g---f~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
..+..+...|||+|-..+ ...+.++.+|||||-|.-.- .+ +..++-..... ..+..+|+-|||
T Consensus 234 ~~~~~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaT 302 (665)
T PRK14873 234 LAVLRGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHA 302 (665)
T ss_pred HHHhCCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCC
Confidence 455667789999995443 35688999999999996541 11 22233333333 247889999999
Q ss_pred CChhh
Q 006737 575 MPKEL 579 (633)
Q Consensus 575 l~~el 579 (633)
-+-+.
T Consensus 303 PSles 307 (665)
T PRK14873 303 RTAEA 307 (665)
T ss_pred CCHHH
Confidence 88774
No 135
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.47 E-value=3.7e-07 Score=106.22 Aligned_cols=73 Identities=29% Similarity=0.378 Sum_probs=59.4
Q ss_pred HcCCCCCcHHHHHHHHHH----hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH
Q 006737 396 AAGYIQMTRVQEATLSAC----LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (633)
Q Consensus 396 ~~g~~~pt~iQ~~aIp~i----l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi 471 (633)
.+....+++.|.+++..+ .+++.+++.||||+|||++|++|++....... .+++|.++|+.|..|+
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~----------~~viist~t~~lq~q~ 79 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG----------KKVIISTRTKALQEQL 79 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC----------CcEEEECCCHHHHHHH
Confidence 355668999999888553 44667999999999999999999998765543 2599999999999999
Q ss_pred HHHHHHH
Q 006737 472 AAEAIAL 478 (633)
Q Consensus 472 ~~~l~~l 478 (633)
.+....+
T Consensus 80 ~~~~~~~ 86 (654)
T COG1199 80 LEEDLPI 86 (654)
T ss_pred HHhhcch
Confidence 8876654
No 136
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.40 E-value=2.9e-06 Score=101.72 Aligned_cols=159 Identities=17% Similarity=0.136 Sum_probs=94.2
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~g--rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
.|.|+|..++-.++.. .-+|+.-..|.|||.-..+-+-..+..... -++|||||+ .|+.|...++.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~---------~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRA---------ERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCC---------CcEEEEcCH-HHHHHHHHHHHHH
Confidence 5899999998776543 368999999999998765544333332211 149999998 8999998888766
Q ss_pred HhcCCCceEEEEECCccchHHHH--HHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCc-C-hHHH
Q 006737 479 LKNHDGIGVLTLVGGTRFKVDQR--RLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G-FRKD 554 (633)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~--~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~-g-f~~~ 554 (633)
+ ++.+.++.++........ ... ...+++|+|.+.|...-.... .+.-...++|||||||++-.. + -...
T Consensus 222 F----~l~~~i~~~~~~~~~~~~~~~pf-~~~~~vI~S~~~l~~~~~~~~--~l~~~~wdlvIvDEAH~lk~~~~~~s~~ 294 (956)
T PRK04914 222 F----NLRFSLFDEERYAEAQHDADNPF-ETEQLVICSLDFLRRNKQRLE--QALAAEWDLLVVDEAHHLVWSEEAPSRE 294 (956)
T ss_pred h----CCCeEEEcCcchhhhcccccCcc-ccCcEEEEEHHHhhhCHHHHH--HHhhcCCCEEEEechhhhccCCCCcCHH
Confidence 5 344444433321110000 000 125799999876653110000 011236789999999998621 1 1112
Q ss_pred HHHHHHHCCCCCcEEEEeccCC
Q 006737 555 VENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 555 l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
+..+.....+...++++|||--
T Consensus 295 y~~v~~La~~~~~~LLLTATP~ 316 (956)
T PRK04914 295 YQVVEQLAEVIPGVLLLTATPE 316 (956)
T ss_pred HHHHHHHhhccCCEEEEEcCcc
Confidence 2222222223456899999964
No 137
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.39 E-value=2.7e-06 Score=101.08 Aligned_cols=148 Identities=19% Similarity=0.274 Sum_probs=87.2
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH-----HHHhc-CCC--ceEE
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI-----ALLKN-HDG--IGVL 488 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~-----~l~~~-~~~--i~v~ 488 (633)
.++.+.++||+|||.+|+-.++......+ ..+.||+||+.+.-..+.+.+. ..+.. +.+ +...
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~---------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~ 130 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG---------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELY 130 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC---------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEE
Confidence 47999999999999999877765433322 2369999999998887775554 22221 122 3333
Q ss_pred EEECCc-------cchHHHHHHhc------CCCcEEEECchhhHHHHh-cc-------cCcccc---cCCe-eEEEEecc
Q 006737 489 TLVGGT-------RFKVDQRRLES------DPCQILVATPGRLLDHIE-NK-------SGLSVR---LMGL-KMLVLDEA 543 (633)
Q Consensus 489 ~l~Gg~-------~~~~~~~~l~~------~~~dILIaTPgrLl~lL~-~~-------~~~~~~---Ls~l-~~LVIDEA 543 (633)
.+.++. .+......+.. +.++|+|+|-+.|..-.. +. .+.... +... -+|||||.
T Consensus 131 ~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEP 210 (986)
T PRK15483 131 VINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEP 210 (986)
T ss_pred EEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECC
Confidence 444332 11223233322 247999999888854211 00 000011 1222 27999999
Q ss_pred cccCCcChHHHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 544 DHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 544 D~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
|++... ...+..| ..+++.+ ++.||||.+.
T Consensus 211 h~~~~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 211 HRFPRD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred CCCCcc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 998642 2233444 5555444 6779999987
No 138
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.37 E-value=3.7e-06 Score=91.70 Aligned_cols=177 Identities=20% Similarity=0.152 Sum_probs=109.7
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHH--HHHHhcCCCCCCCCCC
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE--AVLKATSSSTTQLVPP 455 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~--~l~~~~~~~~~~~~~~ 455 (633)
...|...+.++.-.+.|++.---.....+.+-+..+.+++-+++++.||||||. ++|..- ..+...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~~---------- 91 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSHL---------- 91 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhhc----------
Confidence 456888889999888887753323344455666777888999999999999998 555432 221111
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCe
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l 535 (633)
..+....|.|-.|.++..++-.-. ++..+.-+|-.- . .+.-.....-+-+||.+.|++-..+. ..+...
T Consensus 92 ~~v~CTQprrvaamsva~RVadEM----Dv~lG~EVGysI-r--fEdC~~~~T~Lky~tDgmLlrEams~----p~l~~y 160 (699)
T KOG0925|consen 92 TGVACTQPRRVAAMSVAQRVADEM----DVTLGEEVGYSI-R--FEDCTSPNTLLKYCTDGMLLREAMSD----PLLGRY 160 (699)
T ss_pred cceeecCchHHHHHHHHHHHHHHh----ccccchhccccc-c--ccccCChhHHHHHhcchHHHHHHhhC----cccccc
Confidence 137889999999999877665443 333322222111 0 00000111122356777776655443 458899
Q ss_pred eEEEEecccccCC-cC-hHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 536 KMLVLDEADHLLD-LG-FRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 536 ~~LVIDEAD~Lld-~g-f~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
.+||+||||.-.- .+ ..-.+..++..- ++..+|++|||+-..
T Consensus 161 ~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~ 204 (699)
T KOG0925|consen 161 GVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE 204 (699)
T ss_pred cEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH
Confidence 9999999996431 11 222333444333 489999999999776
No 139
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.28 E-value=3.3e-06 Score=99.38 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=59.9
Q ss_pred cCCCCCcHHHHHHHHH----HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSA----CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~----il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~ 472 (633)
+-|..++|.|.+.+.. +..+.++++.||||+|||++.+.|+|..+..... .++++|.+.|..-..|+.
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~--------~~kIiy~sRThsQl~q~i 77 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPE--------VRKIIYASRTHSQLEQAT 77 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccc--------cccEEEEcccchHHHHHH
Confidence 3466779999887655 4568899999999999999999999987654321 246899999999999999
Q ss_pred HHHHHHH
Q 006737 473 AEAIALL 479 (633)
Q Consensus 473 ~~l~~l~ 479 (633)
++++++.
T Consensus 78 ~Elk~~~ 84 (705)
T TIGR00604 78 EELRKLM 84 (705)
T ss_pred HHHHhhh
Confidence 9988853
No 140
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.21 E-value=5.2e-06 Score=98.66 Aligned_cols=168 Identities=23% Similarity=0.190 Sum_probs=101.3
Q ss_pred CCcHHHHHHHHHHhC--------CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHH
Q 006737 401 QMTRVQEATLSACLE--------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~--------grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~ 472 (633)
.-..+|-.|+..+.. |-=+|-.|.||+|||++=.= |+..+... ..++|..|-.-.|.|..|.-
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~--------~~g~RfsiALGLRTLTLQTG 478 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD--------KQGARFAIALGLRSLTLQTG 478 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC--------CCCceEEEEccccceeccch
Confidence 346788888887665 11255669999999997432 22223222 23467778888888888888
Q ss_pred HHHHHHHhcCCCceEEEEECCccchHHHH----HH---------------------------------------hc----
Q 006737 473 AEAIALLKNHDGIGVLTLVGGTRFKVDQR----RL---------------------------------------ES---- 505 (633)
Q Consensus 473 ~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~----~l---------------------------------------~~---- 505 (633)
..+++.+.- ..-..++++|+.....-.+ .. ..
T Consensus 479 da~r~rL~L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~ 557 (1110)
T TIGR02562 479 HALKTRLNL-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKE 557 (1110)
T ss_pred HHHHHhcCC-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhh
Confidence 888776532 2334555666543222110 00 00
Q ss_pred ---CCCcEEEECchhhHHHHhcc--cCcccccCC--eeEEEEecccccCCcChHHHHHHHHHHCC-CCCcEEEEeccCCh
Q 006737 506 ---DPCQILVATPGRLLDHIENK--SGLSVRLMG--LKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPK 577 (633)
Q Consensus 506 ---~~~dILIaTPgrLl~lL~~~--~~~~~~Ls~--l~~LVIDEAD~Lld~gf~~~l~~Il~~lp-k~~Q~IlfSATl~~ 577 (633)
-...|+|||+..++...... +.....+-. =+.|||||+|.+-.. ....+..++..+. -...+|++|||+|+
T Consensus 558 ~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 558 KTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPP 636 (1110)
T ss_pred hhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 03579999999998876322 111111111 257999999997643 3334445544322 26889999999999
Q ss_pred hh
Q 006737 578 EL 579 (633)
Q Consensus 578 el 579 (633)
.+
T Consensus 637 ~l 638 (1110)
T TIGR02562 637 AL 638 (1110)
T ss_pred HH
Confidence 84
No 141
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.05 E-value=2.2e-05 Score=77.80 Aligned_cols=74 Identities=16% Similarity=0.308 Sum_probs=49.3
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grD-vLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
++++-|..|+..+++... .+|.||.|||||.+ +..++..+..... ......+.++||++|+...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~--~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFK--SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH---------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchh--hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999998 99999999999954 3334444421000 00011234699999999999999988877
No 142
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.00 E-value=7.3e-06 Score=90.61 Aligned_cols=230 Identities=8% Similarity=-0.018 Sum_probs=141.5
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH
Q 006737 392 KALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (633)
Q Consensus 392 ~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi 471 (633)
..+..+.......+|..+|..+..|+++++.-.|.+||.+||.+.....+...... ..+++.||.+++...
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s---------~~~~~~~~~~~~~~~ 347 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHAT---------NSLLPSEMVEHLRNG 347 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCccc---------ceecchhHHHHhhcc
Confidence 34445666778899999999999999999999999999999999887665544321 268999999998765
Q ss_pred HHHHHHHHhcCCCce--EEEEECCccchHHHHHHhcCCCcEEEECchhhHHHH-hcccCcccccCCeeEEEEecccccCC
Q 006737 472 AAEAIALLKNHDGIG--VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHI-ENKSGLSVRLMGLKMLVLDEADHLLD 548 (633)
Q Consensus 472 ~~~l~~l~~~~~~i~--v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL-~~~~~~~~~Ls~l~~LVIDEAD~Lld 548 (633)
.+-+.-.....+..+ ++-.+.+.. ......++..+.++|++.|..+...+ .+...+...+-.+.++++||+|..+.
T Consensus 348 ~~~~~V~~~~I~~~K~A~V~~~D~~s-E~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~ 426 (1034)
T KOG4150|consen 348 SKGQVVHVEVIKARKSAYVEMSDKLS-ETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF 426 (1034)
T ss_pred CCceEEEEEehhhhhcceeecccCCC-chhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec
Confidence 432221111111111 111222222 33455566667899999998776543 33333344455678899999998764
Q ss_pred cC---hHHHHHHHHHHC-----CCCCcEEEEeccCChhhhccccceEee-eccccccccCccceEEEeehh---------
Q 006737 549 LG---FRKDVENIVDCL-----PRRRQSLLFSATMPKELVLKREHTYID-TVGLGSVETPVKVSKYNIYVF--------- 610 (633)
Q Consensus 549 ~g---f~~~l~~Il~~l-----pk~~Q~IlfSATl~~el~l~~~~~~i~-~~~~~~~~~~~~V~q~~i~v~--------- 610 (633)
.- -..++..++..+ +.+.|++-.|||+-..+.+..+---++ ..-+.....|..-++++++-+
T Consensus 427 ~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 427 PTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhh
Confidence 31 233444444433 246899999999987754432211111 001112345555666655432
Q ss_pred ---------hHHHHhhcCCceEEEEEcccc
Q 006737 611 ---------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ---------~l~~~~k~~~~~~LVFcnT~s 631 (633)
-+......++.++|.||+++.
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~ 536 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRK 536 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHH
Confidence 222334566779999999753
No 143
>COG4889 Predicted helicase [General function prediction only]
Probab=97.99 E-value=1.8e-05 Score=91.16 Aligned_cols=139 Identities=20% Similarity=0.208 Sum_probs=90.4
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCC-----CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccH
Q 006737 391 IKALTAAGYIQMTRVQEATLSACLEG-----KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (633)
Q Consensus 391 l~~L~~~g~~~pt~iQ~~aIp~il~g-----rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTR 465 (633)
..+|.-..-.+|+|+|+.||...+.| +--| .+..|+|||+.. |-+.+.+.. .++|+|+|+.
T Consensus 151 ~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkL-IMAcGTGKTfTs-LkisEala~------------~~iL~LvPSI 216 (1518)
T COG4889 151 QDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKL-IMACGTGKTFTS-LKISEALAA------------ARILFLVPSI 216 (1518)
T ss_pred ccccccCCCCCCChhHHHHHHHHHhhcccccCCcE-EEecCCCccchH-HHHHHHHhh------------hheEeecchH
Confidence 33333345568999999999998865 2223 344699999875 445565544 2599999999
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH------------------------HHHhcCCCcEEEECchhhHHH
Q 006737 466 ELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ------------------------RRLESDPCQILVATPGRLLDH 521 (633)
Q Consensus 466 eLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~------------------------~~l~~~~~dILIaTPgrLl~l 521 (633)
.|..|..++...-.. ..++...++++....... ..-+..+--||++|...|...
T Consensus 217 sLLsQTlrew~~~~~--l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i 294 (1518)
T COG4889 217 SLLSQTLREWTAQKE--LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRI 294 (1518)
T ss_pred HHHHHHHHHHhhccC--ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHH
Confidence 999998877655421 145555554443322111 111223456899999888765
Q ss_pred HhcccCcccccCCeeEEEEecccccCC
Q 006737 522 IENKSGLSVRLMGLKMLVLDEADHLLD 548 (633)
Q Consensus 522 L~~~~~~~~~Ls~l~~LVIDEAD~Lld 548 (633)
-+.. ..-+..+++||.||||+-..
T Consensus 295 ~eAQ---e~G~~~fDliicDEAHRTtG 318 (1518)
T COG4889 295 KEAQ---EAGLDEFDLIICDEAHRTTG 318 (1518)
T ss_pred HHHH---HcCCCCccEEEecchhcccc
Confidence 5433 23477899999999998653
No 144
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.95 E-value=5.9e-05 Score=88.47 Aligned_cols=132 Identities=23% Similarity=0.236 Sum_probs=94.3
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 398 g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
|. .|+++|.-.--.+..|+ |+.+.||-|||++..||+.-..+... .|-||+..--||..=.+.+..
T Consensus 76 G~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~Gk-----------gVhVVTvNdYLA~RDae~mg~ 141 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGK-----------GVIVSTVNEYLAERDAEEMGK 141 (925)
T ss_pred CC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCC-----------ceEEEecchhhhhhhHHHHHH
Confidence 44 78888987776777774 79999999999999999864443332 277888888999877777777
Q ss_pred HHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccC---cccccCCeeEEEEecccccC
Q 006737 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~---~~~~Ls~l~~LVIDEAD~Ll 547 (633)
+..++ |+.|+++..+.......... .|||+++|..-| .++|...-. .......+.+.||||+|.+|
T Consensus 142 vy~fL-GLsvG~i~~~~~~~~rr~aY---~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 142 VFNFL-GLSVGINKANMDPNLKREAY---ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHHHh-CCceeeeCCCCChHHHHHhc---cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 77665 89999888766544333322 489999998876 345543210 01225678899999999876
No 145
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.93 E-value=7.2e-05 Score=90.61 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=89.6
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccc
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~ 496 (633)
+.-+|+--||||||+.... +...+... . ..+.+|+|+-.++|-.|+.+.+..+...... .. ...+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~-~-------~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~--~~---~~~s~ 339 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL-P-------KNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN--DP---KAEST 339 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc-c-------CCCeEEEEechHHHHHHHHHHHHHHHHhhhh--cc---cccCH
Confidence 4589999999999997443 22333333 1 2357999999999999999999988653311 11 22333
Q ss_pred hHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCC
Q 006737 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 497 ~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
..-.+.+....-.|||+|-..|...+.........-.++ +||+||||+-- ++..-..+...++ +...++||.|--
T Consensus 340 ~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~i-vvI~DEaHRSQ---~G~~~~~~~~~~~-~a~~~gFTGTPi 414 (962)
T COG0610 340 SELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNV-VVIIDEAHRSQ---YGELAKLLKKALK-KAIFIGFTGTPI 414 (962)
T ss_pred HHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcE-EEEEechhhcc---ccHHHHHHHHHhc-cceEEEeeCCcc
Confidence 333445554445899999999988875541111112222 78999999943 2333333344444 377999998863
No 146
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=97.90 E-value=1.6e-05 Score=87.07 Aligned_cols=153 Identities=17% Similarity=0.158 Sum_probs=101.8
Q ss_pred CCCcHHHHHHHHHHhCC---CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEG---KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~g---rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
..++|+|..++..++.+ ++-||+.|.|+|||++-+-.+. .+. -.+|||+.+--.+.|...++.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-tik-------------K~clvLcts~VSVeQWkqQfk 366 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TIK-------------KSCLVLCTSAVSVEQWKQQFK 366 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-eec-------------ccEEEEecCccCHHHHHHHHH
Confidence 46899999999998853 5889999999999997554332 111 148999999999999998888
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccC-----cccccCCeeEEEEecccccCCcCh
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG-----LSVRLMGLKMLVLDEADHLLDLGF 551 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~-----~~~~Ls~l~~LVIDEAD~Lld~gf 551 (633)
.+..-. .-.++.++.+... ....++.|+|+|...+..--++... ..+.-....++|+||+|.+...-|
T Consensus 367 ~wsti~-d~~i~rFTsd~Ke------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MF 439 (776)
T KOG1123|consen 367 QWSTIQ-DDQICRFTSDAKE------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMF 439 (776)
T ss_pred hhcccC-ccceEEeeccccc------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHH
Confidence 776422 3445555554332 2234589999997665321111000 001123467899999999987656
Q ss_pred HHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 552 RKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 552 ~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
+..+.-+-..+ -+.++||+-.+
T Consensus 440 RRVlsiv~aHc-----KLGLTATLvRE 461 (776)
T KOG1123|consen 440 RRVLSIVQAHC-----KLGLTATLVRE 461 (776)
T ss_pred HHHHHHHHHHh-----hccceeEEeec
Confidence 65555444444 56889998655
No 147
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.89 E-value=2.4e-06 Score=99.97 Aligned_cols=164 Identities=19% Similarity=0.216 Sum_probs=112.1
Q ss_pred CCCCcHHHHHHHHHHhC-CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~-grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
+..+.|+|.+.+-.+.. ..++++.+|||+|||++|-+.++..+.... ..+|+|++|..+|+..-.+....
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p---------~~kvvyIap~kalvker~~Dw~~ 995 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP---------GSKVVYIAPDKALVKERSDDWSK 995 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC---------CccEEEEcCCchhhcccccchhh
Confidence 33566677766654433 457899999999999999998876554332 34799999999999988888777
Q ss_pred HHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHH
Q 006737 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557 (633)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~ 557 (633)
... .+++++.-+.|...... .... .++|+|+||++.-.+..+.. ....+.++..+|+||.|++.+. ..+.++.
T Consensus 996 r~~-~~g~k~ie~tgd~~pd~--~~v~--~~~~~ittpek~dgi~Rsw~-~r~~v~~v~~iv~de~hllg~~-rgPVle~ 1068 (1230)
T KOG0952|consen 996 RDE-LPGIKVIELTGDVTPDV--KAVR--EADIVITTPEKWDGISRSWQ-TRKYVQSVSLIVLDEIHLLGED-RGPVLEV 1068 (1230)
T ss_pred hcc-cCCceeEeccCccCCCh--hhee--cCceEEcccccccCcccccc-chhhhccccceeecccccccCC-CcceEEE
Confidence 654 34888999888876542 2222 36999999999877665332 2345789999999999998753 3333333
Q ss_pred HHH-------HCCCCCcEEEEeccCChh
Q 006737 558 IVD-------CLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 558 Il~-------~lpk~~Q~IlfSATl~~e 578 (633)
+.. .+++..|.+.+|--+.+.
T Consensus 1069 ivsr~n~~s~~t~~~vr~~glsta~~na 1096 (1230)
T KOG0952|consen 1069 IVSRMNYISSQTEEPVRYLGLSTALANA 1096 (1230)
T ss_pred EeeccccCccccCcchhhhhHhhhhhcc
Confidence 322 233345666665544443
No 148
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.88 E-value=4e-05 Score=76.24 Aligned_cols=123 Identities=21% Similarity=0.270 Sum_probs=71.3
Q ss_pred CCcHHHHHHHHHHhCCC--cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACLEGK--DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~gr--DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
++++-|.+++..++... -++++++.|+|||.+ +-.+...+... +.++++++||...+..+.+.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~----------g~~v~~~apT~~Aa~~L~~~~--- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA----------GKRVIGLAPTNKAAKELREKT--- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC----------CCeEEEECCcHHHHHHHHHhh---
Confidence 36889999999997654 477889999999974 23344443332 135999999999988755442
Q ss_pred HhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCc----ccccCCeeEEEEecccccCCcChHHH
Q 006737 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL----SVRLMGLKMLVLDEADHLLDLGFRKD 554 (633)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~----~~~Ls~l~~LVIDEAD~Lld~gf~~~ 554 (633)
++.+. | +..++...... ...+....+||||||-.+.. ..
T Consensus 67 -----~~~a~-------------------------T---i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~ 109 (196)
T PF13604_consen 67 -----GIEAQ-------------------------T---IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQ 109 (196)
T ss_dssp -----TS-EE-------------------------E---HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HH
T ss_pred -----Ccchh-------------------------h---HHHHHhcCCcccccccccCCcccEEEEecccccCH----HH
Confidence 11111 1 11111111000 01144567999999988763 47
Q ss_pred HHHHHHHCCC-CCcEEEEecc
Q 006737 555 VENIVDCLPR-RRQSLLFSAT 574 (633)
Q Consensus 555 l~~Il~~lpk-~~Q~IlfSAT 574 (633)
+..++..++. ..++|++-=+
T Consensus 110 ~~~ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 110 LARLLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp HHHHHHHS-T-T-EEEEEE-T
T ss_pred HHHHHHHHHhcCCEEEEECCc
Confidence 7788888776 5666666543
No 149
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=97.87 E-value=0.00017 Score=82.73 Aligned_cols=155 Identities=14% Similarity=0.249 Sum_probs=100.9
Q ss_pred CCcHHHHHHHHH----HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSA----CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 401 ~pt~iQ~~aIp~----il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.++++|.+-+.- ..+|-+.|+.-.-|-|||+- .|.+|..+..... .++| -|||+|.--|.+= ++++.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~------~~GP-fLVi~P~StL~NW-~~Ef~ 237 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG------IPGP-FLVIAPKSTLDNW-MNEFK 237 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC------CCCC-eEEEeeHhhHHHH-HHHHH
Confidence 678888776544 44677999999999999985 3344444433221 2234 4799998887653 34555
Q ss_pred HHHhcCCCceEEEEECCccchHH--HHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHH
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVD--QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~--~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~ 554 (633)
++ ++++.+.+++|+...... ...+..+..+|+|+|.+..+.--. .+.--.-+||||||||+|-+. ...
T Consensus 238 rf---~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~-----~lk~~~W~ylvIDEaHRiKN~--~s~ 307 (971)
T KOG0385|consen 238 RF---TPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS-----FLKKFNWRYLVIDEAHRIKNE--KSK 307 (971)
T ss_pred Hh---CCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-----HHhcCCceEEEechhhhhcch--hhH
Confidence 54 678999999998653332 223344578999999887764311 112225689999999999764 445
Q ss_pred HHHHHHHCCCCCcEEEEeccC
Q 006737 555 VENIVDCLPRRRQSLLFSATM 575 (633)
Q Consensus 555 l~~Il~~lpk~~Q~IlfSATl 575 (633)
+..++..+.-.. .+++|.|-
T Consensus 308 L~~~lr~f~~~n-rLLlTGTP 327 (971)
T KOG0385|consen 308 LSKILREFKTDN-RLLLTGTP 327 (971)
T ss_pred HHHHHHHhcccc-eeEeeCCc
Confidence 556777665444 44556664
No 150
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.84 E-value=0.00038 Score=80.18 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=97.2
Q ss_pred cCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh----CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 006737 384 CGISPLTIKALTAAGYIQMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (633)
Q Consensus 384 l~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il----~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vL 459 (633)
+.++..|.. .+.++|+..+.-+. ++.--|+.-.-|-|||.-- +..|..|..... ..+ .||
T Consensus 196 ~~vPg~I~~--------~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k------~~~-paL 259 (923)
T KOG0387|consen 196 FKVPGFIWS--------KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGK------LTK-PAL 259 (923)
T ss_pred ccccHHHHH--------HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhccc------ccC-ceE
Confidence 556666644 45678998877654 3445677778899999631 222222322211 111 399
Q ss_pred EEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchH------------HHHHHhcCCCcEEEECchhhHHHHhcccC
Q 006737 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV------------DQRRLESDPCQILVATPGRLLDHIENKSG 527 (633)
Q Consensus 460 ILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~------------~~~~l~~~~~dILIaTPgrLl~lL~~~~~ 527 (633)
||||. .++.|.++++..+. +.++|.++++...... ..........+|+|+|...|.-+ . .
T Consensus 260 IVCP~-Tii~qW~~E~~~w~---p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-~-d-- 331 (923)
T KOG0387|consen 260 IVCPA-TIIHQWMKEFQTWW---PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-G-D-- 331 (923)
T ss_pred EEccH-HHHHHHHHHHHHhC---cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-C-c--
Confidence 99996 46677777777775 4788989888765211 01111122347999997776432 1 1
Q ss_pred cccccCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCC
Q 006737 528 LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 528 ~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
.+.-..-+|+|+||.|+|-+.. ..+......++ ..+.|++|.|.=
T Consensus 332 -~l~~~~W~y~ILDEGH~IrNpn--s~islackki~-T~~RiILSGTPi 376 (923)
T KOG0387|consen 332 -DLLGILWDYVILDEGHRIRNPN--SKISLACKKIR-TVHRIILSGTPI 376 (923)
T ss_pred -ccccccccEEEecCcccccCCc--cHHHHHHHhcc-ccceEEeeCccc
Confidence 1222345799999999997652 23333333333 455677787753
No 151
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.83 E-value=6.7e-05 Score=75.24 Aligned_cols=140 Identities=19% Similarity=0.231 Sum_probs=73.0
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
+...|.-|..++.++++..-+++.||.|||||+..+..+++.+...... +.+|+-|+.+....+
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~---------kiii~Rp~v~~~~~l------- 65 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYD---------KIIITRPPVEAGEDL------- 65 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S---------EEEEEE-S--TT----------
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc---------EEEEEecCCCCcccc-------
Confidence 3456889999999999888899999999999999888888887664322 577887876542221
Q ss_pred HhcCCCc---eE-----------EEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccc
Q 006737 479 LKNHDGI---GV-----------LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (633)
Q Consensus 479 ~~~~~~i---~v-----------~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD 544 (633)
.+.++- +. ..+.+.. ....+... ..|-+..+.-+. + ..+.+ .+||||||.
T Consensus 66 -GflpG~~~eK~~p~~~p~~d~l~~~~~~~----~~~~~~~~-~~Ie~~~~~~iR-----G----rt~~~-~~iIvDEaQ 129 (205)
T PF02562_consen 66 -GFLPGDLEEKMEPYLRPIYDALEELFGKE----KLEELIQN-GKIEIEPLAFIR-----G----RTFDN-AFIIVDEAQ 129 (205)
T ss_dssp --SS---------TTTHHHHHHHTTTS-TT----CHHHHHHT-TSEEEEEGGGGT-----T------B-S-EEEEE-SGG
T ss_pred -ccCCCCHHHHHHHHHHHHHHHHHHHhChH----hHHHHhhc-CeEEEEehhhhc-----C----ccccc-eEEEEeccc
Confidence 111100 00 0000111 11111111 245555433321 1 22332 789999999
Q ss_pred ccCCcChHHHHHHHHHHCCCCCcEEEEecc
Q 006737 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 545 ~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
.+. ..++..++..+..++++|++--.
T Consensus 130 N~t----~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 130 NLT----PEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp G------HHHHHHHHTTB-TT-EEEEEE--
T ss_pred CCC----HHHHHHHHcccCCCcEEEEecCc
Confidence 876 55888999999988988887543
No 152
>PRK10536 hypothetical protein; Provisional
Probab=97.66 E-value=0.00066 Score=70.32 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=83.2
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHH------
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ------ 470 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Q------ 470 (633)
.++...+..|...+..+.++..+++.|++|||||+..+..+++.+..... -+++|.-|+.+....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~---------~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDV---------DRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCe---------eEEEEeCCCCCchhhhCcCCC
Confidence 45667889999999999998889999999999999776666655544221 246666666543221
Q ss_pred -HHHHHHHHHhcC-CCceEEEEECCccchHHHHHHh-cCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccC
Q 006737 471 -IAAEAIALLKNH-DGIGVLTLVGGTRFKVDQRRLE-SDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 471 -i~~~l~~l~~~~-~~i~v~~l~Gg~~~~~~~~~l~-~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Ll 547 (633)
+.+.+..++... ..+. .+.|.. ....+. ...-.|-|.. - .++.. ..| +-.+||||||+.+.
T Consensus 126 ~~~eK~~p~~~pi~D~L~--~~~~~~----~~~~~~~~~~~~Iei~~-l---~ymRG-----rtl-~~~~vIvDEaqn~~ 189 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLV--RRLGAS----FMQYCLRPEIGKVEIAP-F---AYMRG-----RTF-ENAVVILDEAQNVT 189 (262)
T ss_pred CHHHHHHHHHHHHHHHHH--HHhChH----HHHHHHHhccCcEEEec-H---HHhcC-----Ccc-cCCEEEEechhcCC
Confidence 111111111100 0000 001111 111111 1111344443 2 22221 123 23789999999876
Q ss_pred CcChHHHHHHHHHHCCCCCcEEEEec
Q 006737 548 DLGFRKDVENIVDCLPRRRQSLLFSA 573 (633)
Q Consensus 548 d~gf~~~l~~Il~~lpk~~Q~IlfSA 573 (633)
- .++..++..+..+.++|++--
T Consensus 190 ~----~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 190 A----AQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred H----HHHHHHHhhcCCCCEEEEeCC
Confidence 3 688889999998888777543
No 153
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.65 E-value=0.00013 Score=86.66 Aligned_cols=130 Identities=21% Similarity=0.249 Sum_probs=89.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.|+++|.-.--.+..|+ |+.+.||-||||+..||+.-..+.... |-||+-.--||.-=.+.+..++.
T Consensus 138 ~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~G~g-----------VHvVTvNDYLA~RDaewm~p~y~ 204 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALTGRG-----------VHVVTVNDYLAQRDKEWMNPVFE 204 (1025)
T ss_pred cccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHcCCC-----------cEEEeechHhhhhhHHHHHHHHH
Confidence 46677766555566665 889999999999999999755554422 66777778888876667777776
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccC---cccccCCeeEEEEecccccC
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~---~~~~Ls~l~~LVIDEAD~Ll 547 (633)
++ |+.|.|+..+....... ....|||.++|..-| .++|...-. .......+.+.||||+|.+|
T Consensus 205 fl-GLtVg~i~~~~~~~~Rr---~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 205 FH-GLSVGVILNTMRPEERR---EQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred Hh-CCeeeeeCCCCCHHHHH---HhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 66 99999987655544322 233589999998766 333322210 01224678899999999876
No 154
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=97.53 E-value=0.0013 Score=77.07 Aligned_cols=164 Identities=17% Similarity=0.207 Sum_probs=104.1
Q ss_pred CCcHHHHHHHHHHhC---CC-------cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHH
Q 006737 401 QMTRVQEATLSACLE---GK-------DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~---gr-------DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Q 470 (633)
.+.|+|++.+.-+.. |. -+|+.-..|+|||+. +|+.+..+++..+.... .--++|||+|. .|+.-
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~---~~~k~lVV~P~-sLv~n 312 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKP---LINKPLVVAPS-SLVNN 312 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccc---cccccEEEccH-HHHHH
Confidence 568999999877543 22 355555679999986 45566666665332100 11358999994 68888
Q ss_pred HHHHHHHHHhcCCCceEEEEECCccc-hHHHHH-H----hcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccc
Q 006737 471 IAAEAIALLKNHDGIGVLTLVGGTRF-KVDQRR-L----ESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (633)
Q Consensus 471 i~~~l~~l~~~~~~i~v~~l~Gg~~~-~~~~~~-l----~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD 544 (633)
..++|.++.... .+....++|.... ...... + .....-|+|.+.+.+.+++.. +.+..+.+||+||.|
T Consensus 313 WkkEF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 313 WKKEFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcCCCCeEEECCCC
Confidence 889998887642 5667777777663 000010 1 111235777888888766543 456789999999999
Q ss_pred ccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 545 ~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
++=+. ...+...+..+. -..-|++|.|+=..
T Consensus 387 rlkN~--~s~~~kaL~~l~-t~rRVLLSGTp~QN 417 (776)
T KOG0390|consen 387 RLKNS--DSLTLKALSSLK-TPRRVLLTGTPIQN 417 (776)
T ss_pred Cccch--hhHHHHHHHhcC-CCceEEeeCCcccc
Confidence 98653 344555555554 34467789997544
No 155
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.46 E-value=0.00037 Score=75.39 Aligned_cols=108 Identities=16% Similarity=0.252 Sum_probs=65.7
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccch
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~ 497 (633)
-++|.|..|||||++. +-++..+.... .+..++++++...|...+...+......
T Consensus 3 v~~I~G~aGTGKTvla-~~l~~~l~~~~--------~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLA-LNLAKELQNSE--------EGKKVLYLCGNHPLRNKLREQLAKKYNP---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHH-HHHHHHhhccc--------cCCceEEEEecchHHHHHHHHHhhhccc----------------
Confidence 4789999999999863 33343331111 1235899999999998877666544200
Q ss_pred HHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcC-------hHHHHHHHHHH
Q 006737 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-------FRKDVENIVDC 561 (633)
Q Consensus 498 ~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~g-------f~~~l~~Il~~ 561 (633)
......+..|..+...+... .......++|||||||+|...+ ...++..|+..
T Consensus 58 --------~~~~~~~~~~~~~i~~~~~~---~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --------KLKKSDFRKPTSFINNYSES---DKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --------chhhhhhhhhHHHHhhcccc---cccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 00123344444444433211 1335688999999999998732 34667777665
No 156
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.46 E-value=0.00032 Score=83.65 Aligned_cols=131 Identities=19% Similarity=0.195 Sum_probs=86.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.++++|.-.--.+..| -|+.+.||-||||+..||+.-..+.... |-||+..--||.-=.+.+..+..
T Consensus 169 ~~yDVQliGgivLh~G--~IAEM~TGEGKTLvAtlp~yLnAL~Gkg-----------VHvVTVNDYLA~RDaewmgply~ 235 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQG--KIAEMATGEGKTLVATLPVYLNALTGNG-----------VHVVTVNDYLAKRDSEWMGPLYE 235 (1112)
T ss_pred cccchHHhhhhhhcCC--ceeeecCCCCchhHHHHHHHHHHHcCCC-----------cEEEEechhhhhccHHHHHHHHH
Confidence 3566665554445555 4899999999999999999766554432 66778888888766666666666
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccC---cccccCCeeEEEEecccccC
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~---~~~~Ls~l~~LVIDEAD~Ll 547 (633)
++ |+.|+|+..........+. ...|||.++|..-| .++|...-. .......+.+.||||+|.+|
T Consensus 236 fL-GLsvg~i~~~~~~~~~rr~--aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 236 FH-GLSVDCIDKHQPNSEARRK--AYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred Hh-CCceeecCCCCCCHHHHHH--hCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 55 8999988653222222222 23489999998766 333322210 01235668899999999876
No 157
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.44 E-value=0.00055 Score=77.14 Aligned_cols=65 Identities=23% Similarity=0.347 Sum_probs=50.6
Q ss_pred CCCcHHHHHHHHHHhCCCc-EEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grD-vLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
+.+.+-|..|+....+.++ .+++||+|+|||.....-+.+.+ ..+. ++||..||.+.+..|.+.+
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlv-k~~k----------~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLV-KQKK----------RVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHH-HcCC----------eEEEEcCchHHHHHHHHHh
Confidence 3578889999999988865 57889999999987655444444 4332 6999999999999888753
No 158
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.42 E-value=0.00071 Score=76.68 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=64.9
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHH
Q 006737 393 ALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (633)
Q Consensus 393 ~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~ 472 (633)
.+...++.+++.-|..|+.++|+..=.||++|+|+|||+.-.- |+-++.+... ..+||.+|+.-.+.|+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~~~---------~~VLvcApSNiAVDqLa 471 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQHA---------GPVLVCAPSNIAVDQLA 471 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHhcC---------CceEEEcccchhHHHHH
Confidence 4455678889999999999999999999999999999987543 3444444322 14999999999999998
Q ss_pred HHHHHHHhcCCCceEEEEE
Q 006737 473 AEAIALLKNHDGIGVLTLV 491 (633)
Q Consensus 473 ~~l~~l~~~~~~i~v~~l~ 491 (633)
+.+.+. +++|.-++
T Consensus 472 eKIh~t-----gLKVvRl~ 485 (935)
T KOG1802|consen 472 EKIHKT-----GLKVVRLC 485 (935)
T ss_pred HHHHhc-----CceEeeee
Confidence 887765 56665443
No 159
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.42 E-value=0.00099 Score=76.86 Aligned_cols=157 Identities=15% Similarity=0.228 Sum_probs=95.2
Q ss_pred CcHHHHHHHHHHh----CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 402 MTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 402 pt~iQ~~aIp~il----~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
+-++|.--+..+. .+-+.|+.-.-|-|||.- ++..|..|...+. ++| -|||||.--|-+ -+++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-------~gp-HLVVvPsSTleN----WlrE 466 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-------PGP-HLVVVPSSTLEN----WLRE 466 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC-------CCC-cEEEecchhHHH----HHHH
Confidence 6778877665532 234678888899999953 3444444443332 222 489999866644 5566
Q ss_pred HHhcCCCceEEEEECCccchHHHH-HHhc--CCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHH
Q 006737 478 LLKNHDGIGVLTLVGGTRFKVDQR-RLES--DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (633)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~-~l~~--~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~ 554 (633)
+.++++.++|..++|........+ .+.. .+.+||++|......--... ..+.-.++.++|+||+|.|-+.. ...
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDR--sflk~~~~n~viyDEgHmLKN~~-SeR 543 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDR--SFLKNQKFNYVIYDEGHMLKNRT-SER 543 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHH--HHHHhccccEEEecchhhhhccc-hHH
Confidence 666678999999999875554433 2233 26899999975543110000 01223467899999999987653 222
Q ss_pred HHHHHHHCCCCCcEEEEeccCC
Q 006737 555 VENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 555 l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
+..++. ++ ..+.|+++.|--
T Consensus 544 y~~LM~-I~-An~RlLLTGTPL 563 (941)
T KOG0389|consen 544 YKHLMS-IN-ANFRLLLTGTPL 563 (941)
T ss_pred HHHhcc-cc-ccceEEeeCCcc
Confidence 333322 22 345677788753
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.39 E-value=0.00048 Score=80.44 Aligned_cols=137 Identities=19% Similarity=0.243 Sum_probs=84.8
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccch
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~ 497 (633)
-.+|.||.|||||.+..-+ |...+.. +..++|+|+-.+.|+.++...++...- .++....-..+..
T Consensus 51 V~vVRSpMGTGKTtaLi~w-Lk~~l~~---------~~~~VLvVShRrSL~~sL~~rf~~~~l--~gFv~Y~d~~~~~-- 116 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRW-LKDALKN---------PDKSVLVVSHRRSLTKSLAERFKKAGL--SGFVNYLDSDDYI-- 116 (824)
T ss_pred eEEEECCCCCCcHHHHHHH-HHHhccC---------CCCeEEEEEhHHHHHHHHHHHHhhcCC--Ccceeeecccccc--
Confidence 4688899999999865443 3332211 123699999999999999888875421 1222111111111
Q ss_pred HHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHH------H-HHHHCCCCCcEEE
Q 006737 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE------N-IVDCLPRRRQSLL 570 (633)
Q Consensus 498 ~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~------~-Il~~lpk~~Q~Il 570 (633)
+.....+-+++..+.|.++.. ..+.+.++|||||+..++..-|...+. . +...+.....+|+
T Consensus 117 -----i~~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~ 185 (824)
T PF02399_consen 117 -----IDGRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIV 185 (824)
T ss_pred -----ccccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEE
Confidence 111124677777777766532 236678999999999877543322222 2 2334556678999
Q ss_pred EeccCChhh
Q 006737 571 FSATMPKEL 579 (633)
Q Consensus 571 fSATl~~el 579 (633)
+-||++...
T Consensus 186 ~DA~ln~~t 194 (824)
T PF02399_consen 186 MDADLNDQT 194 (824)
T ss_pred ecCCCCHHH
Confidence 999999883
No 161
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.39 E-value=0.0014 Score=78.10 Aligned_cols=154 Identities=16% Similarity=0.252 Sum_probs=97.1
Q ss_pred CcHHHHHHHHHHh----CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 402 MTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 402 pt~iQ~~aIp~il----~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
++.+|..-+..+. ++-|-|+.-.-|-|||.- .|.+|.|+.-.+.. . || -||||||-.+.+= .-+|++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeegn-W-----GP-HLIVVpTsviLnW-EMElKR 686 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEGN-W-----GP-HLIVVPTSVILNW-EMELKR 686 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcccC-C-----CC-ceEEeechhhhhh-hHHHhh
Confidence 4567777665543 234778888999999974 45667776554321 1 12 5899999766542 235555
Q ss_pred HHhcCCCceEEEEECCccchHHH--HHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHH
Q 006737 478 LLKNHDGIGVLTLVGGTRFKVDQ--RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555 (633)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~--~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l 555 (633)
+ ++++++..++|........ ...+.+..||.|++...+..-+.. +.-.+.+|+||||||.+-++ -...+
T Consensus 687 w---cPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-----FkrkrWqyLvLDEaqnIKnf-ksqrW 757 (1958)
T KOG0391|consen 687 W---CPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-----FKRKRWQYLVLDEAQNIKNF-KSQRW 757 (1958)
T ss_pred h---CCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-----HHhhccceeehhhhhhhcch-hHHHH
Confidence 5 5699999999986543322 223345678999887776654432 23457889999999999765 23344
Q ss_pred HHHHHHCCCCCcEEEEeccC
Q 006737 556 ENIVDCLPRRRQSLLFSATM 575 (633)
Q Consensus 556 ~~Il~~lpk~~Q~IlfSATl 575 (633)
..+++. +. .|.++++.|-
T Consensus 758 QAllnf-ns-qrRLLLtgTP 775 (1958)
T KOG0391|consen 758 QALLNF-NS-QRRLLLTGTP 775 (1958)
T ss_pred HHHhcc-ch-hheeeecCCc
Confidence 455443 32 3455666663
No 162
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.37 E-value=0.0015 Score=77.15 Aligned_cols=129 Identities=19% Similarity=0.243 Sum_probs=77.7
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
..+++-|++|+..+..++-+++.++.|+|||.+. -.++..+..... ...+++++||-..|..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~--------~~~v~l~ApTg~AA~~L~e~~---- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGG--------LLPVGLAAPTGRAAKRLGEVT---- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCC--------CceEEEEeCchHHHHHHHHhc----
Confidence 4799999999999999999999999999999742 223333322210 124788999998887543221
Q ss_pred hcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHH
Q 006737 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (633)
Q Consensus 480 ~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il 559 (633)
+.... ....+... .|+...... .......++||||||+++... .+..++
T Consensus 389 ----g~~a~----------Tih~lL~~-------~~~~~~~~~------~~~~~~~~llIvDEaSMvd~~----~~~~Ll 437 (720)
T TIGR01448 389 ----GLTAS----------TIHRLLGY-------GPDTFRHNH------LEDPIDCDLLIVDESSMMDTW----LALSLL 437 (720)
T ss_pred ----CCccc----------cHHHHhhc-------cCCccchhh------hhccccCCEEEEeccccCCHH----HHHHHH
Confidence 11100 11111110 111110000 011235679999999998643 567777
Q ss_pred HHCCCCCcEEEEe
Q 006737 560 DCLPRRRQSLLFS 572 (633)
Q Consensus 560 ~~lpk~~Q~IlfS 572 (633)
..++...++|++-
T Consensus 438 ~~~~~~~rlilvG 450 (720)
T TIGR01448 438 AALPDHARLLLVG 450 (720)
T ss_pred HhCCCCCEEEEEC
Confidence 7888888887764
No 163
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.36 E-value=0.0012 Score=67.07 Aligned_cols=154 Identities=20% Similarity=0.254 Sum_probs=94.9
Q ss_pred ccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC---CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLE---GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 381 F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~---grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
|+-+.-+..++=.+.. ++ -+++.|.++...+.+ |.|.+.+.-.|.|||.+ ++|++..++.++.. .
T Consensus 5 w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~---------L 72 (229)
T PF12340_consen 5 WDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR---------L 72 (229)
T ss_pred CCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc---------E
Confidence 4444445555544432 22 578999999988876 57999999999999976 78998887765432 3
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEE--CCccchH----HH----HHHhcCCCcEEEECchhhHHHHhccc-
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLV--GGTRFKV----DQ----RRLESDPCQILVATPGRLLDHIENKS- 526 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~--Gg~~~~~----~~----~~l~~~~~dILIaTPgrLl~lL~~~~- 526 (633)
|.+++| ++|..|..+.+...+...-+-.+..+. -.+.... .. +..... -.|+++||+.++.+.-..-
T Consensus 73 vrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~-~gill~~PEhilSf~L~~le 150 (229)
T PF12340_consen 73 VRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRS-GGILLATPEHILSFKLKGLE 150 (229)
T ss_pred EEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHc-CCEEEeChHHHHHHHHHHHH
Confidence 667777 569999998888777654444443332 1222111 11 112222 2699999998864321110
Q ss_pred -----C---------cccccCCeeEEEEecccccCC
Q 006737 527 -----G---------LSVRLMGLKMLVLDEADHLLD 548 (633)
Q Consensus 527 -----~---------~~~~Ls~l~~LVIDEAD~Lld 548 (633)
. ....+.....=|+||+|.++.
T Consensus 151 ~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 151 RLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0 000133444578999998875
No 164
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.30 E-value=0.0016 Score=75.08 Aligned_cols=143 Identities=19% Similarity=0.245 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCC
Q 006737 404 RVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD 483 (633)
Q Consensus 404 ~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~ 483 (633)
..|+.++..++.++-+++.|+.|||||.+. ..++..+....... ..+++++++||--.|..+.+.+.......
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~~-----~~~~I~l~APTGkAA~rL~e~~~~~~~~l- 220 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPKQ-----GKLRIALAAPTGKAAARLAESLRKAVKNL- 220 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhcccc-----CCCcEEEECCcHHHHHHHHHHHHhhhccc-
Confidence 799999999999999999999999999853 22333333221110 12468999999999988776665433211
Q ss_pred CceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCc---ccccCCeeEEEEecccccCCcChHHHHHHHHH
Q 006737 484 GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL---SVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (633)
Q Consensus 484 ~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~---~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~ 560 (633)
.. . ..... ...+-..|-.+|+........+ ..+...+++||||||=++. ...+..++.
T Consensus 221 --~~-------~-~~~~~-----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~ 281 (586)
T TIGR01447 221 --AA-------A-EALIA-----ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLK 281 (586)
T ss_pred --cc-------c-hhhhh-----ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHH
Confidence 00 0 00000 0011123333333221110000 0122357899999997764 336777888
Q ss_pred HCCCCCcEEEEe
Q 006737 561 CLPRRRQSLLFS 572 (633)
Q Consensus 561 ~lpk~~Q~IlfS 572 (633)
.++...++|++-
T Consensus 282 al~~~~rlIlvG 293 (586)
T TIGR01447 282 ALPPNTKLILLG 293 (586)
T ss_pred hcCCCCEEEEEC
Confidence 888888777764
No 165
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.30 E-value=0.0031 Score=69.53 Aligned_cols=131 Identities=20% Similarity=0.246 Sum_probs=83.1
Q ss_pred CCcHHHHHHHHHHhCCC-----cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACLEGK-----DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~gr-----DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.+-|+|.+-+--+.... --|+.-.-|.|||.-.+.-+| .... +-.+|||+|+.+|. |..+++
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLll----ae~~--------ra~tLVvaP~VAlm-QW~nEI 250 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLL----AEVD--------RAPTLVVAPTVALM-QWKNEI 250 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHH----hccc--------cCCeeEEccHHHHH-HHHHHH
Confidence 45678887765544332 235566779999975433222 2211 12389999999985 566777
Q ss_pred HHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhc-ccC---------cccccCCee--EEEEecc
Q 006737 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIEN-KSG---------LSVRLMGLK--MLVLDEA 543 (633)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~-~~~---------~~~~Ls~l~--~LVIDEA 543 (633)
..... ..+++.+++|..... ..+.+.+ .|++.+|...+...... ..+ ....|.+++ -||+|||
T Consensus 251 ~~~T~--gslkv~~YhG~~R~~-nikel~~--YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEA 325 (791)
T KOG1002|consen 251 ERHTS--GSLKVYIYHGAKRDK-NIKELMN--YDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEA 325 (791)
T ss_pred HHhcc--CceEEEEEecccccC-CHHHhhc--CcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhh
Confidence 77765 367888888765533 3444443 69999999888776644 221 111255555 5899999
Q ss_pred cccCCc
Q 006737 544 DHLLDL 549 (633)
Q Consensus 544 D~Lld~ 549 (633)
|.+-+.
T Consensus 326 H~IK~R 331 (791)
T KOG1002|consen 326 HNIKDR 331 (791)
T ss_pred cccccc
Confidence 998753
No 166
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.29 E-value=0.0024 Score=67.37 Aligned_cols=175 Identities=18% Similarity=0.170 Sum_probs=106.8
Q ss_pred ccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC----------CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCC
Q 006737 383 ECGISPLTIKALTAAGYIQMTRVQEATLSACLE----------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQL 452 (633)
Q Consensus 383 el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~----------grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~ 452 (633)
.+.|++.++. .| .++..|.+++-.... ..-.++--.||.||.-.-.--|+.+.+...
T Consensus 25 ~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr------- 91 (303)
T PF13872_consen 25 RLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR------- 91 (303)
T ss_pred ccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-------
Confidence 3456665432 22 568888888755432 345778888999987654444555555442
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 453 VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 453 ~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
.++|+|+.+-.|-.+..+.+..+... .+.+..+.. .... ....+ .-.||++|.-.|...-.........|
T Consensus 92 ---~r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~-~~~~-~~~~~---~~GvlF~TYs~L~~~~~~~~~~~sRl 161 (303)
T PF13872_consen 92 ---KRAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNK-FKYG-DIIRL---KEGVLFSTYSTLISESQSGGKYRSRL 161 (303)
T ss_pred ---CceEEEECChhhhhHHHHHHHHhCCC--cccceechh-hccC-cCCCC---CCCccchhHHHHHhHHhccCCccchH
Confidence 25899999999999999999988654 233322211 0000 00111 23699999888766543211111111
Q ss_pred C--------C-eeEEEEecccccCCcC--------hHHHHHHHHHHCCCCCcEEEEeccCChhhhc
Q 006737 533 M--------G-LKMLVLDEADHLLDLG--------FRKDVENIVDCLPRRRQSLLFSATMPKELVL 581 (633)
Q Consensus 533 s--------~-l~~LVIDEAD~Lld~g--------f~~~l~~Il~~lpk~~Q~IlfSATl~~el~l 581 (633)
. + =.+||+||+|..-+.. -...+..+.+.+|+ .++|.+|||-..+...
T Consensus 162 ~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~-ARvvY~SATgasep~N 226 (303)
T PF13872_consen 162 DQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN-ARVVYASATGASEPRN 226 (303)
T ss_pred HHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC-CcEEEecccccCCCce
Confidence 1 1 1379999999987542 23456666777865 4599999999877543
No 167
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.26 E-value=0.0013 Score=76.19 Aligned_cols=143 Identities=19% Similarity=0.261 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcC
Q 006737 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482 (633)
Q Consensus 403 t~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~ 482 (633)
.+.|+.|+-..+..+-++|.|++|+|||.+. .-++..+..... ....++++++||...|..+.+.+.......
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~~~~~~ 226 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLAD------GERCRIRLAAPTGKAAARLTESLGKALRQL 226 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHhhhhcc
Confidence 5899999999999999999999999999753 223333332211 012468899999999998877665443211
Q ss_pred CCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCc---ccccCCeeEEEEecccccCCcChHHHHHHHH
Q 006737 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL---SVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (633)
Q Consensus 483 ~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~---~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il 559 (633)
. + ....... ...-..|-.+|+........+ ..+.-.+++||||||-++- ...+..++
T Consensus 227 ~-~-----------~~~~~~~----~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll 286 (615)
T PRK10875 227 P-L-----------TDEQKKR----IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLI 286 (615)
T ss_pred c-c-----------chhhhhc----CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHH
Confidence 0 0 0000000 001112222222211100000 0122346899999997764 44677788
Q ss_pred HHCCCCCcEEEEe
Q 006737 560 DCLPRRRQSLLFS 572 (633)
Q Consensus 560 ~~lpk~~Q~IlfS 572 (633)
..+++..++|++-
T Consensus 287 ~al~~~~rlIlvG 299 (615)
T PRK10875 287 DALPPHARVIFLG 299 (615)
T ss_pred HhcccCCEEEEec
Confidence 8888888887774
No 168
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.16 E-value=0.00087 Score=76.41 Aligned_cols=142 Identities=19% Similarity=0.315 Sum_probs=88.5
Q ss_pred CCcHHHHHHHHHHhC-----CCcEEEEccCCCCchhhhHHHHHHHHHHh-cCCCCCCCCCCeEEEEEcccHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACLE-----GKDAVVKAKTGTGKSIAFLLPAIEAVLKA-TSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~-----grDvLv~ApTGSGKTlaylLPiL~~l~~~-~~~~~~~~~~~~~vLILvPTReLa~Qi~~~ 474 (633)
.+-|+|..++..++- ..--|+..--|-|||+..+--++..-... ........ .. .+|||||- .|+.|.+.+
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~-a~-~TLII~Pa-Sli~qW~~E 401 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGES-AS-KTLIICPA-SLIHQWEAE 401 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccc-cC-CeEEeCcH-HHHHHHHHH
Confidence 367899999887763 23456677778999996544444322211 11111111 11 48999995 677888888
Q ss_pred HHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHH----HHhcccCcccccCCe--eEEEEecccccCC
Q 006737 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLD----HIENKSGLSVRLMGL--KMLVLDEADHLLD 548 (633)
Q Consensus 475 l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~----lL~~~~~~~~~Ls~l--~~LVIDEAD~Lld 548 (633)
+....... .+.|.+++|........+.+.. +||||+|..-+.. -+..... ...|-.| ..||+||||.+-+
T Consensus 402 v~~rl~~n-~LsV~~~HG~n~r~i~~~~L~~--YDvViTTY~lva~~~~~e~~~~~~-~spL~~I~W~RVILDEAH~IrN 477 (901)
T KOG4439|consen 402 VARRLEQN-ALSVYLYHGPNKREISAKELRK--YDVVITTYNLVANKPDDELEEGKN-SSPLARIAWSRVILDEAHNIRN 477 (901)
T ss_pred HHHHHhhc-ceEEEEecCCccccCCHHHHhh--cceEEEeeeccccCCchhhhcccC-ccHHHHhhHHHhhhhhhhhhcc
Confidence 87776543 7899999998764444555554 6999999766544 1111111 1123333 4699999999865
Q ss_pred c
Q 006737 549 L 549 (633)
Q Consensus 549 ~ 549 (633)
.
T Consensus 478 ~ 478 (901)
T KOG4439|consen 478 S 478 (901)
T ss_pred c
Confidence 4
No 169
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.12 E-value=0.0024 Score=74.45 Aligned_cols=148 Identities=18% Similarity=0.219 Sum_probs=79.2
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhc-----CCCceEEEEEC
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN-----HDGIGVLTLVG 492 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~-----~~~i~v~~l~G 492 (633)
++=|.+.||+|||.||+=.+++.-...+ -.+-||||||.+.-.-++........+ +.+.+.-.++-
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~YG---------~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~ 146 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKYG---------LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIY 146 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHhC---------ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEee
Confidence 7888999999999999876664322222 136799999998765544333332222 22333333322
Q ss_pred CccchHHHHHHhcCCCcEEEECchhhHH------HHhccc----Cc----ccc---cCCe-eEEEEecccccCCcChHHH
Q 006737 493 GTRFKVDQRRLESDPCQILVATPGRLLD------HIENKS----GL----SVR---LMGL-KMLVLDEADHLLDLGFRKD 554 (633)
Q Consensus 493 g~~~~~~~~~l~~~~~dILIaTPgrLl~------lL~~~~----~~----~~~---Ls~l-~~LVIDEAD~Lld~gf~~~ 554 (633)
..... ....-.++.+.||+.|-..+.. ++.... +. ... +..+ -+|||||=|+|... -..
T Consensus 147 ~~~~~-~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~ 223 (985)
T COG3587 147 DEDIE-KFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKT 223 (985)
T ss_pred chHHH-HHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHH
Confidence 21111 1122233456788777555432 121110 00 000 1112 27999999999853 223
Q ss_pred HHHHHHHCCCCCcEEEEeccCChhh
Q 006737 555 VENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 555 l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+..|....| .-++=|+||.+.+.
T Consensus 224 ~~~i~~l~p--l~ilRfgATfkd~y 246 (985)
T COG3587 224 YGAIKQLNP--LLILRFGATFKDEY 246 (985)
T ss_pred HHHHHhhCc--eEEEEecccchhhh
Confidence 333333322 23677899999884
No 170
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.11 E-value=0.00071 Score=69.89 Aligned_cols=86 Identities=24% Similarity=0.296 Sum_probs=65.6
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECC-ccchHHHHHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 454 PPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG-TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 454 ~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg-~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
+.|.+|||+..--=|.++.+.++.+-.. +..|+-++.. ....++...+....++|.||||+||..++.++ .+.+
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~---~L~l 199 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG---ALSL 199 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC---CCCc
Confidence 3567999999887788888777766311 2334444444 36677888888888999999999999999877 5789
Q ss_pred CCeeEEEEeccc
Q 006737 533 MGLKMLVLDEAD 544 (633)
Q Consensus 533 s~l~~LVIDEAD 544 (633)
+++.+||||--|
T Consensus 200 ~~l~~ivlD~s~ 211 (252)
T PF14617_consen 200 SNLKRIVLDWSY 211 (252)
T ss_pred ccCeEEEEcCCc
Confidence 999999999754
No 171
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.08 E-value=0.0024 Score=58.01 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=12.5
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.++.+++.|++|+|||.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3457899999999999853
No 172
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.02 E-value=0.0034 Score=73.44 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=53.4
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCC-----------------CC--------CC
Q 006737 401 QMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSS-----------------ST--------TQ 451 (633)
Q Consensus 401 ~pt~iQ~~aIp~il----~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~-----------------~~--------~~ 451 (633)
+|++.|...+..++ ...+.++.+|||+|||++.+...|......... .. ..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 67899987766655 467899999999999998776666544332100 00 00
Q ss_pred C------CCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 452 L------VPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 452 ~------~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
. ..-|++.|-+-|..-..|+++++++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0 125677777788888888888887663
No 173
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.82 E-value=0.0033 Score=68.54 Aligned_cols=60 Identities=32% Similarity=0.389 Sum_probs=44.4
Q ss_pred CCcHHHHHHHHHH------hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH
Q 006737 401 QMTRVQEATLSAC------LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (633)
Q Consensus 401 ~pt~iQ~~aIp~i------l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi 471 (633)
++++-|+.++..+ ..+..+++.|+-|+|||. ++-++...+... +..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~~~---------~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLRSR---------GKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhccc---------cceEEEecchHHHHHhc
Confidence 3677899998887 678899999999999997 444444443331 23589999998887765
No 174
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.79 E-value=0.015 Score=69.15 Aligned_cols=62 Identities=23% Similarity=0.214 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHHhCC-CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~g-rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~ 472 (633)
..+++-|..|+..++.+ +-+++.++.|+|||.. +-.+..++... +..+++++||--.|..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~~---------g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEAA---------GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHhC---------CCeEEEEeCcHHHHHHHH
Confidence 36899999999999874 5678999999999974 33333333321 235889999987776543
No 175
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.78 E-value=0.0034 Score=65.30 Aligned_cols=71 Identities=24% Similarity=0.332 Sum_probs=51.7
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhc
Q 006737 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (633)
Q Consensus 402 pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~ 481 (633)
+|+-|.+++.. ....++|.|..|||||.+.+--++..+.... ..+-++|+|++|+..|.++...+...+..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-------~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-------VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-------STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-------CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 57889999987 6678999999999999975544444343332 12235999999999999999999887653
No 176
>PF13245 AAA_19: Part of AAA domain
Probab=96.76 E-value=0.0043 Score=52.46 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=35.5
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
+.-++|.+|.|||||... +.++..+....... +-++||++||+..+..+.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~-~~~i~~l~~~~~~~------~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTL-AARIAELLAARADP------GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHHhcCC------CCeEEEECCCHHHHHHHHHHH
Confidence 334556999999999653 34444444321100 125999999999999988777
No 177
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.71 E-value=0.0072 Score=71.44 Aligned_cols=137 Identities=21% Similarity=0.224 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCc-EEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcc
Q 006737 385 GISPLTIKALTAAGYIQMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (633)
Q Consensus 385 ~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grD-vLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvP 463 (633)
.+.|.+.+. -+..++.-|++|+-.++..+| .+|.|-+|+|||... ..+-+++-... -+||+.+=
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI--~~LIkiL~~~g---------kkVLLtsy 721 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTI--SLLIKILVALG---------KKVLLTSY 721 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhH--HHHHHHHHHcC---------CeEEEEeh
Confidence 345555543 245788999999999998886 588899999999853 33333333221 25888888
Q ss_pred cHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHH----------------hcCCCcEEEECchhhHHHHhcccC
Q 006737 464 TRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRL----------------ESDPCQILVATPGRLLDHIENKSG 527 (633)
Q Consensus 464 TReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l----------------~~~~~dILIaTPgrLl~lL~~~~~ 527 (633)
|...+..|.-.+... ++.+.-+-.+.....+.+.+ .-+.+.|+.+|-..+.+.|-.
T Consensus 722 ThsAVDNILiKL~~~-----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~--- 793 (1100)
T KOG1805|consen 722 THSAVDNILIKLKGF-----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFV--- 793 (1100)
T ss_pred hhHHHHHHHHHHhcc-----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhh---
Confidence 887777665544433 22221111111111111111 113468999998888765533
Q ss_pred cccccCCeeEEEEecccccCC
Q 006737 528 LSVRLMGLKMLVLDEADHLLD 548 (633)
Q Consensus 528 ~~~~Ls~l~~LVIDEAD~Lld 548 (633)
.+.++|+|||||-.++.
T Consensus 794 ----~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 794 ----NRQFDYCIIDEASQILL 810 (1100)
T ss_pred ----ccccCEEEEcccccccc
Confidence 34689999999998764
No 178
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.65 E-value=0.012 Score=71.62 Aligned_cols=60 Identities=25% Similarity=0.246 Sum_probs=44.6
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH
Q 006737 401 QMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grD-vLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi 471 (633)
.+++-|..++..++.+++ +++.+..|+|||.. +-.+..+.... +.+++.++||--.|..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~~---------G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWEAA---------GYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHHHc---------CCeEEEecCcHHHHHHH
Confidence 699999999999998765 68899999999984 33333333321 23689999998777554
No 179
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.64 E-value=0.0044 Score=72.48 Aligned_cols=154 Identities=23% Similarity=0.255 Sum_probs=96.5
Q ss_pred HHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCce
Q 006737 407 EATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIG 486 (633)
Q Consensus 407 ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~ 486 (633)
...+.++....-++|.+.||+|||.-+.--+|+.+....... ..-+.+-.|+|-.+.-+.+.+.+--...
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~------~~na~v~qprrisaisiaerva~er~e~---- 453 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA------SFNAVVSQPRRISAISLAERVANERGEE---- 453 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc------cccceeccccccchHHHHHHHHHhhHHh----
Confidence 344555556677889999999999988888888877654322 1237788899988877776654332111
Q ss_pred EEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCC-cChHHHHHHHHHHCCCC
Q 006737 487 VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRR 565 (633)
Q Consensus 487 v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld-~gf~~~l~~Il~~lpk~ 565 (633)
++-.+| .........-... --|++||-+-|+.++.+. +..+.++|+||.|...- ..|...+.+-+..+-++
T Consensus 454 ~g~tvg-y~vRf~Sa~prpy-g~i~fctvgvllr~~e~g------lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~d 525 (1282)
T KOG0921|consen 454 VGETCG-YNVRFDSATPRPY-GSIMFCTVGVLLRMMENG------LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRD 525 (1282)
T ss_pred hccccc-ccccccccccccc-cceeeeccchhhhhhhhc------ccccccccchhhhhhccchHHHHHHHHhhhccchh
Confidence 111111 1111110001111 269999999999999876 56888999999997653 33555444444344446
Q ss_pred CcEEEEeccCChh
Q 006737 566 RQSLLFSATMPKE 578 (633)
Q Consensus 566 ~Q~IlfSATl~~e 578 (633)
..++++|||+.-.
T Consensus 526 l~v~lmsatIdTd 538 (1282)
T KOG0921|consen 526 LRVVLMSATIDTD 538 (1282)
T ss_pred hhhhhhhcccchh
Confidence 6677777777655
No 180
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.59 E-value=0.027 Score=50.63 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
++.+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999963
No 181
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=96.54 E-value=0.016 Score=64.27 Aligned_cols=158 Identities=20% Similarity=0.250 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEccc
Q 006737 386 ISPLTIKALTAAGYIQMTRVQEATLSACL-EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (633)
Q Consensus 386 L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il-~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPT 464 (633)
+++.|+..| -|+|.+-+...+ .|.-+++.-.-|-|||+-.+ ++...+...- | .|||||.
T Consensus 191 ~d~kLvs~L--------lPFQreGv~faL~RgGR~llADeMGLGKTiQAl--aIA~yyraEw---------p-lliVcPA 250 (689)
T KOG1000|consen 191 MDPKLVSRL--------LPFQREGVIFALERGGRILLADEMGLGKTIQAL--AIARYYRAEW---------P-LLIVCPA 250 (689)
T ss_pred cCHHHHHhh--------CchhhhhHHHHHhcCCeEEEecccccchHHHHH--HHHHHHhhcC---------c-EEEEecH
Confidence 346665544 588999887755 46678888999999998543 3334444432 1 6899996
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccc
Q 006737 465 RELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (633)
Q Consensus 465 ReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD 544 (633)
- +-....+.+..++..... +.++.++.+.....- . ...|.|.+.+.|..+-.. +.-....+||+||.|
T Consensus 251 s-vrftWa~al~r~lps~~p--i~vv~~~~D~~~~~~---t-~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH 318 (689)
T KOG1000|consen 251 S-VRFTWAKALNRFLPSIHP--IFVVDKSSDPLPDVC---T-SNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESH 318 (689)
T ss_pred H-HhHHHHHHHHHhcccccc--eEEEecccCCccccc---c-CCeEEEEEHHHHHHHHHH-----HhcccceEEEEechh
Confidence 4 334455666666644322 344444433221110 1 136888887776543221 222347899999999
Q ss_pred ccCCcChHHHHHHHHHHCCCCCcEEEEeccCC
Q 006737 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 545 ~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
.|-+.. ...+..++..+..-..+|++|.|-.
T Consensus 319 ~Lk~sk-tkr~Ka~~dllk~akhvILLSGTPa 349 (689)
T KOG1000|consen 319 MLKDSK-TKRTKAATDLLKVAKHVILLSGTPA 349 (689)
T ss_pred hhhccc-hhhhhhhhhHHHHhhheEEecCCcc
Confidence 987542 3335555555555677999999963
No 182
>PRK06921 hypothetical protein; Provisional
Probab=96.42 E-value=0.037 Score=57.83 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=18.8
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~ 442 (633)
.+..+++.|++|+|||... ..+.+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHh
Confidence 3578999999999999632 23344443
No 183
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=96.39 E-value=0.0056 Score=68.53 Aligned_cols=99 Identities=26% Similarity=0.234 Sum_probs=67.4
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccc
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~ 496 (633)
+-++-++||.||||. .+|+++...+. +++--|.|-||.+|++.+.+. ++.+-+++|....
T Consensus 192 kIi~H~GPTNSGKTy----~ALqrl~~aks-----------GvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~ 251 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTY----RALQRLKSAKS-----------GVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERR 251 (700)
T ss_pred eEEEEeCCCCCchhH----HHHHHHhhhcc-----------ceecchHHHHHHHHHHHhhhc-----CCCccccccceee
Confidence 346778999999996 57788776643 689999999999999999887 6666677775432
Q ss_pred hHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCc
Q 006737 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (633)
Q Consensus 497 ~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~ 549 (633)
...- ..+.++.+=||-+.+. --..+++.||||+..|-+.
T Consensus 252 ~~~~---~~~~a~hvScTVEM~s-----------v~~~yeVAViDEIQmm~Dp 290 (700)
T KOG0953|consen 252 FVLD---NGNPAQHVSCTVEMVS-----------VNTPYEVAVIDEIQMMRDP 290 (700)
T ss_pred ecCC---CCCcccceEEEEEEee-----------cCCceEEEEehhHHhhcCc
Confidence 2211 1223566667755431 1134667777777777653
No 184
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.34 E-value=0.026 Score=60.85 Aligned_cols=150 Identities=18% Similarity=0.162 Sum_probs=85.6
Q ss_pred cCCCCCcHHHHHHHHHHhCCC--cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGK--DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~gr--DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~ 474 (633)
.|+..-+..|.-|+.+++.-. =|.+.++.|||||+..+...+...+..+.- -++||.=|+..+-.+|
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y--------~KiiVtRp~vpvG~dI--- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRY--------RKIIVTRPTVPVGEDI--- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhh--------ceEEEecCCcCccccc---
Confidence 577778888999999988764 356779999999999888888887766532 2467766776554332
Q ss_pred HHHHHhcCCCceE---EEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCe-------eEEEEeccc
Q 006737 475 AIALLKNHDGIGV---LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL-------KMLVLDEAD 544 (633)
Q Consensus 475 l~~l~~~~~~i~v---~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l-------~~LVIDEAD 544 (633)
.+.+|..- .-..+ ......+.+.+.. =++-+.|...+....-....+..| .+||||||.
T Consensus 293 -----GfLPG~eEeKm~PWmq--~i~DnLE~L~~~~----~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQ 361 (436)
T COG1875 293 -----GFLPGTEEEKMGPWMQ--AIFDNLEVLFSPN----EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQ 361 (436)
T ss_pred -----CcCCCchhhhccchHH--HHHhHHHHHhccc----ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhh
Confidence 11111000 00000 0000111111110 012233333333221100111111 489999999
Q ss_pred ccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 545 HLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 545 ~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
.|- ..++..|+........+|++.
T Consensus 362 NLT----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 362 NLT----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ccC----HHHHHHHHHhccCCCEEEEcC
Confidence 886 458999999999888888754
No 185
>PRK08181 transposase; Validated
Probab=96.31 E-value=0.039 Score=57.77 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=28.6
Q ss_pred cCCeeEEEEecccccCCcC-hHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLG-FRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~g-f~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
+..+++|||||++.+.... -...+..|++..-....+|+.|-.-+.+
T Consensus 165 l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~ 212 (269)
T PRK08181 165 LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGE 212 (269)
T ss_pred HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 3467799999999875432 3345667766543345565555544444
No 186
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.24 E-value=0.051 Score=66.70 Aligned_cols=138 Identities=18% Similarity=0.182 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcc
Q 006737 385 GISPLTIKALTAAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (633)
Q Consensus 385 ~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~-grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvP 463 (633)
++++..+......+ ..+++-|..++..+.. ++-++++|+.|+|||.+ +-.+..+.... +.+++.++|
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~--l~~~~~~~e~~---------G~~V~g~Ap 433 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM--MKAAREAWEAA---------GYRVVGGAL 433 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH--HHHHHHHHHHc---------CCeEEEEcC
Confidence 34555555544433 4799999999998865 45688999999999974 33333333321 236889999
Q ss_pred cHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecc
Q 006737 464 TRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543 (633)
Q Consensus 464 TReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEA 543 (633)
|--.|..+.+. . ++... |-.+++...... ...+..-.+||||||
T Consensus 434 TgkAA~~L~e~----~----Gi~a~-------------------------TIas~ll~~~~~---~~~l~~~~vlVIDEA 477 (1102)
T PRK13826 434 AGKAAEGLEKE----A----GIQSR-------------------------TLSSWELRWNQG---RDQLDNKTVFVLDEA 477 (1102)
T ss_pred cHHHHHHHHHh----h----CCCee-------------------------eHHHHHhhhccC---ccCCCCCcEEEEECc
Confidence 98777654321 1 22211 111111000011 123556678999999
Q ss_pred cccCCcChHHHHHHHHHHCC-CCCcEEEEecc
Q 006737 544 DHLLDLGFRKDVENIVDCLP-RRRQSLLFSAT 574 (633)
Q Consensus 544 D~Lld~gf~~~l~~Il~~lp-k~~Q~IlfSAT 574 (633)
-++... ++..++...+ ...++|++.=+
T Consensus 478 sMv~~~----~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 478 GMVASR----QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred ccCCHH----HHHHHHHHHHhcCCEEEEECCH
Confidence 877533 5555666554 45677776533
No 187
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.14 E-value=0.029 Score=63.41 Aligned_cols=150 Identities=14% Similarity=0.169 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhC-----C----CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHH
Q 006737 404 RVQEATLSACLE-----G----KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (633)
Q Consensus 404 ~iQ~~aIp~il~-----g----rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~ 474 (633)
|+|+-++-.++. | +.+++.-+-+.|||.....-++-.+.-.. ..+..+++++++++-|..+++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-------~~~~~i~~~A~~~~QA~~~f~~ 73 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG-------EPGAEIYCAANTRDQAKIVFDE 73 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC-------ccCceEEEEeCCHHHHHHHHHH
Confidence 577777777663 2 46888889999999854443343333221 1235699999999999999999
Q ss_pred HHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHH
Q 006737 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554 (633)
Q Consensus 475 l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~ 554 (633)
+..+....+.+.... .........-.|.+-..+.+...+..... ..+=.+..++|+||+|.+-+......
T Consensus 74 ~~~~i~~~~~l~~~~---------~~~~~~~~~~~i~~~~~~s~~~~~s~~~~-~~dG~~~~~~i~DE~h~~~~~~~~~~ 143 (477)
T PF03354_consen 74 AKKMIEASPELRKRK---------KPKIIKSNKKEIEFPKTGSFFKALSSDAD-SLDGLNPSLAIFDELHAHKDDELYDA 143 (477)
T ss_pred HHHHHHhChhhccch---------hhhhhhhhceEEEEcCCCcEEEEEecCCC-CccCCCCceEEEeCCCCCCCHHHHHH
Confidence 999987544322100 00000111123444333444333332221 12223578999999999876544444
Q ss_pred HHHHHHHCCCCCcEEEE
Q 006737 555 VENIVDCLPRRRQSLLF 571 (633)
Q Consensus 555 l~~Il~~lpk~~Q~Ilf 571 (633)
+..-.... ++.+++++
T Consensus 144 l~~g~~~r-~~pl~~~I 159 (477)
T PF03354_consen 144 LESGMGAR-PNPLIIII 159 (477)
T ss_pred HHhhhccC-CCceEEEE
Confidence 44443332 34555555
No 188
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.12 E-value=0.028 Score=67.98 Aligned_cols=159 Identities=19% Similarity=0.253 Sum_probs=96.8
Q ss_pred CcHHHHHHHHHH--h-CCC-cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 402 MTRVQEATLSAC--L-EGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 402 pt~iQ~~aIp~i--l-~gr-DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
++.+|++-+.-+ + .++ +-|+|---|-|||+-.+.-+....++...+ ......+-.|||||. .|+-....++.+
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~--~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSE--SSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhccc--chhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 456787766542 2 233 779999999999996544333333333211 112222338999995 688888888887
Q ss_pred HHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHH
Q 006737 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557 (633)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~ 557 (633)
++. .++|..++|+...+...+.-. ...+|||++...+.+-+..- .-...-|+|+||-|.|-+. ...+.+
T Consensus 1053 f~p---fL~v~~yvg~p~~r~~lR~q~-~~~~iiVtSYDv~RnD~d~l-----~~~~wNYcVLDEGHVikN~--ktkl~k 1121 (1549)
T KOG0392|consen 1053 FFP---FLKVLQYVGPPAERRELRDQY-KNANIIVTSYDVVRNDVDYL-----IKIDWNYCVLDEGHVIKNS--KTKLTK 1121 (1549)
T ss_pred hcc---hhhhhhhcCChHHHHHHHhhc-cccceEEeeHHHHHHHHHHH-----HhcccceEEecCcceecch--HHHHHH
Confidence 764 467777777655443322222 23699999988886433211 1124568999999998764 444445
Q ss_pred HHHHCCCCCcEEEEeccC
Q 006737 558 IVDCLPRRRQSLLFSATM 575 (633)
Q Consensus 558 Il~~lpk~~Q~IlfSATl 575 (633)
.++.+..+. .+++|.|-
T Consensus 1122 avkqL~a~h-RLILSGTP 1138 (1549)
T KOG0392|consen 1122 AVKQLRANH-RLILSGTP 1138 (1549)
T ss_pred HHHHHhhcc-eEEeeCCC
Confidence 555555444 44557774
No 189
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.11 E-value=0.018 Score=67.97 Aligned_cols=126 Identities=23% Similarity=0.285 Sum_probs=87.0
Q ss_pred HHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCce
Q 006737 407 EATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIG 486 (633)
Q Consensus 407 ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~ 486 (633)
.+.+-.+.....-++.+.||-||||+..+|+.-..+..+ .+.+|+-.--||.--.+.+..+..+. ++.
T Consensus 84 VQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk-----------gVhvVTvNdYLA~RDae~m~~l~~~L-Gls 151 (822)
T COG0653 84 VQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK-----------GVHVVTVNDYLARRDAEWMGPLYEFL-GLS 151 (822)
T ss_pred HHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC-----------CcEEeeehHHhhhhCHHHHHHHHHHc-CCc
Confidence 344444444455689999999999999999864433322 27788888899988888888888766 899
Q ss_pred EEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcc---cCcccccCCeeEEEEecccccC
Q 006737 487 VLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENK---SGLSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 487 v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~---~~~~~~Ls~l~~LVIDEAD~Ll 547 (633)
|++...+.......... .|||.++|-..| .++|... .........+.+.||||+|-++
T Consensus 152 vG~~~~~m~~~ek~~aY---~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 152 VGVILAGMSPEEKRAAY---ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeeccCCCChHHHHHHH---hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 99988887655444433 379999998776 2222111 0001234568899999999776
No 190
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.01 Score=66.38 Aligned_cols=68 Identities=24% Similarity=0.354 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHhCC-----CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACLEG-----KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~g-----rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.|+.=|-+||..+..| +.-++.|.||||||+... -++..+ .. -+||++|.+-||.|++.++
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~A-nVI~~~---~r----------PtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMA-NVIAKV---QR----------PTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHH-HHHHHh---CC----------CeEEEecchhHHHHHHHHH
Confidence 3555566666555443 577889999999998532 222222 11 1899999999999999999
Q ss_pred HHHHhcC
Q 006737 476 IALLKNH 482 (633)
Q Consensus 476 ~~l~~~~ 482 (633)
+.++...
T Consensus 78 k~fFP~N 84 (663)
T COG0556 78 KEFFPEN 84 (663)
T ss_pred HHhCcCc
Confidence 9998543
No 191
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.11 Score=57.04 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=33.9
Q ss_pred cCccccCCCHHHHHHHHHc---C--CCCCcHHH---HHHH----HHH-------hCCCcEEEEccCCCCchhhhH
Q 006737 379 KRFDECGISPLTIKALTAA---G--YIQMTRVQ---EATL----SAC-------LEGKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~---g--~~~pt~iQ---~~aI----p~i-------l~grDvLv~ApTGSGKTlayl 434 (633)
..+..+|+++.+.+.|... + ...+...+ ...+ +.+ ..|..+++++|||+|||....
T Consensus 81 ~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 81 KYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred HHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHH
Confidence 4467788999888887552 1 11222222 2222 111 235689999999999998644
No 192
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.97 E-value=0.085 Score=54.50 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=30.3
Q ss_pred cCCeeEEEEecccccCCcChHH-HHHHHHHH-CCCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRK-DVENIVDC-LPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~-~l~~Il~~-lpk~~Q~IlfSATl~~el 579 (633)
+..+++|||||++......+.. .+..|++. ......+|+.|---+.++
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 3467899999999876544443 45556664 334566777665544443
No 193
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.94 E-value=0.026 Score=50.07 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
+..+++.+|+|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 45789999999999984
No 194
>PRK04296 thymidine kinase; Provisional
Probab=95.93 E-value=0.007 Score=59.83 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=24.5
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccC
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl 575 (633)
.++++||||||+.+.. .++..++..+.+.-..+++++-.
T Consensus 77 ~~~dvviIDEaq~l~~----~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 77 EKIDCVLIDEAQFLDK----EQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred CCCCEEEEEccccCCH----HHHHHHHHHHHHcCCeEEEEecC
Confidence 3678999999976532 34666666644444455665544
No 195
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=95.86 E-value=0.034 Score=67.29 Aligned_cols=153 Identities=16% Similarity=0.244 Sum_probs=92.6
Q ss_pred CCCcHHHHHHHHHHh----CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il----~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.+++.+|..-+.-++ ++.++|+.-.-|-|||+- .+..|..|..... ..|| .|||+|.--+.. ..+.+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~------~~gp-flvvvplst~~~-W~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ------IHGP-FLVVVPLSTITA-WEREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhh------ccCC-eEEEeehhhhHH-HHHHH
Confidence 457888887766554 578999999999999964 2233333333221 1223 578889765543 23455
Q ss_pred HHHHhcCCCceEEEEECCccchHHHHHH---hcC-----CCcEEEECchhhHHHHhcccCcccccCCe--eEEEEecccc
Q 006737 476 IALLKNHDGIGVLTLVGGTRFKVDQRRL---ESD-----PCQILVATPGRLLDHIENKSGLSVRLMGL--KMLVLDEADH 545 (633)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l---~~~-----~~dILIaTPgrLl~lL~~~~~~~~~Ls~l--~~LVIDEAD~ 545 (633)
.... .+++.+++|.......++.. ... ..++||+|.+.++.- +..|+.| .+++|||||+
T Consensus 440 ~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD-------k~~L~~i~w~~~~vDeahr 508 (1373)
T KOG0384|consen 440 ETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD-------KAELSKIPWRYLLVDEAHR 508 (1373)
T ss_pred HHHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc-------HhhhccCCcceeeecHHhh
Confidence 5553 67889999987655433222 222 478999998877542 1334444 6899999999
Q ss_pred cCCcChHHHHHHHHHHCCCCCcEEEEeccC
Q 006737 546 LLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (633)
Q Consensus 546 Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl 575 (633)
|-+. ...+...+..+.-+.+ ++++.|-
T Consensus 509 LkN~--~~~l~~~l~~f~~~~r-llitgTP 535 (1373)
T KOG0384|consen 509 LKND--ESKLYESLNQFKMNHR-LLITGTP 535 (1373)
T ss_pred cCch--HHHHHHHHHHhcccce-eeecCCC
Confidence 9754 2233333444433333 4455554
No 196
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.83 E-value=0.052 Score=52.44 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=29.4
Q ss_pred EEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 419 AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 419 vLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
+++.|++|+|||...+--+...+ +.+ -.|+|++ +.+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~g----------~~v~~~s-~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-ARG----------EPGLYVT-LEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HCC----------CcEEEEE-CCCCHHHHHHHHHHc
Confidence 68999999999975332222222 221 2376664 456677776666655
No 197
>PRK06526 transposase; Provisional
Probab=95.80 E-value=0.043 Score=57.00 Aligned_cols=46 Identities=13% Similarity=-0.020 Sum_probs=27.6
Q ss_pred CCeeEEEEecccccCCcC-hHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDLG-FRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~g-f~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
...++|||||+|.+.... -...+..++........+|+.|..-+..
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 456899999999875322 2334556665432334566666665554
No 198
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.66 E-value=0.098 Score=48.46 Aligned_cols=46 Identities=15% Similarity=0.383 Sum_probs=30.6
Q ss_pred CCeeEEEEecccccCCcC----------hHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDLG----------FRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~g----------f~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
....+|||||++.+.+.. ....+..+...+.....++++....++.
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 467899999999875432 3456666666666555566666666554
No 199
>PRK08727 hypothetical protein; Validated
Probab=95.65 E-value=0.063 Score=54.80 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=25.8
Q ss_pred CCeeEEEEecccccCCcC-hHHHHHHHHHHCCC-CCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDLG-FRKDVENIVDCLPR-RRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~g-f~~~l~~Il~~lpk-~~Q~IlfSATl~~e 578 (633)
.+..+|||||+|.+.... ....+..+++.+.. ..++ ++|+..++.
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~v-I~ts~~~p~ 138 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITL-LYTARQMPD 138 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeE-EEECCCChh
Confidence 355689999999987543 33445555554432 3344 455544443
No 200
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.64 E-value=0.033 Score=65.19 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=52.0
Q ss_pred CCCcHHHHHHHHHHhCC-CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~g-rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
..+++.|..|+..++.. ..++|.||+|+|||.+. .-++.++.... .++|+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~~g----------~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVKRG----------LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHHcC----------CCEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999998876 57889999999999753 33344443321 2599999999999998888765
No 201
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.61 E-value=0.12 Score=56.99 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=31.8
Q ss_pred cCCeeEEEEecccccCCcC-hHHHHHHHHHHCCCC-CcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLG-FRKDVENIVDCLPRR-RQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~g-f~~~l~~Il~~lpk~-~Q~IlfSATl~~e 578 (633)
+.+.++||||++.++.... ....+..++...... --++++|||....
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 3578899999999876321 334555666655433 3568889999765
No 202
>PRK12377 putative replication protein; Provisional
Probab=95.59 E-value=0.17 Score=52.38 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=26.5
Q ss_pred cCCeeEEEEecccccCCcC-hHHHHHHHHHH-CCCCCcEEEEecc
Q 006737 532 LMGLKMLVLDEADHLLDLG-FRKDVENIVDC-LPRRRQSLLFSAT 574 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~g-f~~~l~~Il~~-lpk~~Q~IlfSAT 574 (633)
+.++++|||||++...... -...+..|++. ......+|+.|--
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4578899999996543222 34455566654 3345677776553
No 203
>PRK05642 DNA replication initiation factor; Validated
Probab=95.55 E-value=0.077 Score=54.23 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCeeEEEEecccccCCc-ChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDL-GFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~-gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
.++++||||++|.+... .....+..+++.+......+++++|.++.
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 35578999999988643 34566778887665443456666665443
No 204
>PHA02533 17 large terminase protein; Provisional
Probab=95.55 E-value=0.15 Score=58.57 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=86.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.|.|.|...+..+..++=.++..+-..|||.+...-++....... +..+++++|++..|..+++.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~---------~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK---------DKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC---------CCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 578999999988766665677788889999876544443333221 23699999999999999999887765
Q ss_pred cCCCc-eEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHH
Q 006737 481 NHDGI-GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (633)
Q Consensus 481 ~~~~i-~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il 559 (633)
..+.+ ...+.. .. .....+ .+++.|.+.|-.. + ...=.++.++||||+|.+-+ +...+..+.
T Consensus 130 ~~P~l~~~~i~~-~~---~~~I~l-~NGS~I~~lss~~--~--------t~rG~~~~~liiDE~a~~~~--~~e~~~ai~ 192 (534)
T PHA02533 130 LLPDFLQPGIVE-WN---KGSIEL-ENGSKIGAYASSP--D--------AVRGNSFAMIYIDECAFIPN--FIDFWLAIQ 192 (534)
T ss_pred hCHHHhhcceee-cC---ccEEEe-CCCCEEEEEeCCC--C--------ccCCCCCceEEEeccccCCC--HHHHHHHHH
Confidence 44322 111100 00 001111 2334554443211 0 11122567899999998754 333444444
Q ss_pred HHCCC--CCcEEEEeccC
Q 006737 560 DCLPR--RRQSLLFSATM 575 (633)
Q Consensus 560 ~~lpk--~~Q~IlfSATl 575 (633)
..+.. ..+++++|..-
T Consensus 193 p~lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 193 PVISSGRSSKIIITSTPN 210 (534)
T ss_pred HHHHcCCCceEEEEECCC
Confidence 43332 23566666654
No 205
>PRK14974 cell division protein FtsY; Provisional
Probab=95.53 E-value=0.11 Score=56.27 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=36.6
Q ss_pred CCeeEEEEecccccC-CcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Ll-d~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
...++||||.|.++. +..+...+..+...+.++.-+++++||..+.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 356799999999886 3456778888888787787789999988765
No 206
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.53 E-value=0.11 Score=51.97 Aligned_cols=43 Identities=9% Similarity=0.244 Sum_probs=25.2
Q ss_pred eeEEEEecccccCCc-ChHHHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 535 LKMLVLDEADHLLDL-GFRKDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 535 l~~LVIDEAD~Lld~-gf~~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
..+|||||+|.+... .....+..++..+......+++|++.+.
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAP 134 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 357999999998643 2355566666543322224555665443
No 207
>PRK06893 DNA replication initiation factor; Validated
Probab=95.51 E-value=0.036 Score=56.41 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=31.3
Q ss_pred CCeeEEEEecccccCCc-ChHHHHHHHHHHCCC-CCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDL-GFRKDVENIVDCLPR-RRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~-gf~~~l~~Il~~lpk-~~Q~IlfSATl~~e 578 (633)
.+.++|||||+|.+... .+...+..+++.+.. ..++|++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 45678999999998633 244456666665543 45677888887655
No 208
>PRK08116 hypothetical protein; Validated
Probab=95.42 E-value=0.17 Score=52.89 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=28.6
Q ss_pred cCCeeEEEEecccc--cCCcChHHHHHHHHHHC-CCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADH--LLDLGFRKDVENIVDCL-PRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~--Lld~gf~~~l~~Il~~l-pk~~Q~IlfSATl~~el 579 (633)
+.+.++||||+++. ..+| ....+..|++.. ....++|+.|-.-+.++
T Consensus 176 l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEEL 225 (268)
T ss_pred hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 34677899999964 3333 345566666643 34466777666555554
No 209
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.31 E-value=0.22 Score=53.79 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=27.8
Q ss_pred cCCeeEEEEecccccCCcC-hHHHHHHHHHHCC-CCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLG-FRKDVENIVDCLP-RRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~g-f~~~l~~Il~~lp-k~~Q~IlfSATl~~e 578 (633)
+.++++||||+.+...... ....+..|++..- ...++|+ |..++..
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIi-TSNl~~~ 291 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMII-STNLSLE 291 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEE-ECCCCHH
Confidence 3467899999998765333 3456667766442 3455555 5554443
No 210
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.23 E-value=0.021 Score=64.69 Aligned_cols=73 Identities=27% Similarity=0.322 Sum_probs=44.0
Q ss_pred CCCcEEEECchhhHHHHhcccCcccc---cCCeeE-EEEecccccCCcC---------hHHHHH---HHHHHCCCCCcEE
Q 006737 506 DPCQILVATPGRLLDHIENKSGLSVR---LMGLKM-LVLDEADHLLDLG---------FRKDVE---NIVDCLPRRRQSL 569 (633)
Q Consensus 506 ~~~dILIaTPgrLl~lL~~~~~~~~~---Ls~l~~-LVIDEAD~Lld~g---------f~~~l~---~Il~~lpk~~Q~I 569 (633)
....|.++|-..|...+.+...-.+. |.+..+ ++-||||+|-... -...+. .+.-.-+++--++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~l 159 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLL 159 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceee
Confidence 45789999999997776544322232 444444 4679999986321 111122 2222334556678
Q ss_pred EEeccCChh
Q 006737 570 LFSATMPKE 578 (633)
Q Consensus 570 lfSATl~~e 578 (633)
.||||++++
T Consensus 160 ef~at~~k~ 168 (812)
T COG3421 160 EFSATIPKE 168 (812)
T ss_pred hhhhcCCcc
Confidence 899999976
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.23 E-value=0.14 Score=50.98 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=33.0
Q ss_pred CCeeEEEEecccccCC-cChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld-~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
++.++|+||=+-+... ......+..++..+.+..-.+++|||...+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE 128 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH
Confidence 4577899998876553 235667777777776666788889999877
No 212
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.13 E-value=0.043 Score=65.09 Aligned_cols=71 Identities=21% Similarity=0.237 Sum_probs=52.8
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
..+++-|.+++.+. ...++|.|..|||||.+. ..-+.++..... .++-++|+|+-|+..|.++.+.+.+++
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L-~~Ria~Li~~~~------v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVL-THRIAWLLSVEN------ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHH-HHHHHHHHHcCC------CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 46899999998753 458999999999999873 333344443211 123369999999999999999988875
No 213
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.12 E-value=0.3 Score=54.49 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=33.6
Q ss_pred ECchhhHHHHhcccCcccccCCeeEEEEecccccCC-cChHHHHHHHHHHC-CCCCcEEEEeccCChh
Q 006737 513 ATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCL-PRRRQSLLFSATMPKE 578 (633)
Q Consensus 513 aTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld-~gf~~~l~~Il~~l-pk~~Q~IlfSATl~~e 578 (633)
.++..+...+.. +...++||||-+-+... ......+..++... .+..-.+++|||....
T Consensus 285 ~~~~~l~~~l~~-------~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 285 YDPKELAKALEQ-------LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred CCHHhHHHHHHH-------hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 445555555532 23578899998865432 22344555555522 2234477889987754
No 214
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.21 Score=55.11 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=36.6
Q ss_pred EECchhhHHHHhcccCcccccCCeeEEEEecccccCCc-ChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 512 VATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-GFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 512 IaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~-gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
+.+|..|.+.+..- ....+.++|+||-+=+.... .....+..++....+..-++++|||....
T Consensus 302 ~~d~~~L~~aL~~l----k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 302 VRDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred cCCHHHHHHHHHHH----HhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 44677776666432 11125788999988765532 23445555555444444467789886654
No 215
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=94.93 E-value=0.05 Score=64.74 Aligned_cols=131 Identities=15% Similarity=0.231 Sum_probs=82.7
Q ss_pred CCCcHHHHHHHHHHhC---C-CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLE---G-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~---g-rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.++.++|...+..+.+ + -+-|+.-.+|-|||.. .+.++..++..+. ..+| -|||||+--|.+=. .+|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~------~~GP-~LvivPlstL~NW~-~Ef 463 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQ------MQGP-FLIIVPLSTLVNWS-SEF 463 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcc------cCCC-eEEeccccccCCch-hhc
Confidence 4688888888766543 3 3778888999999976 3445555555443 2234 47999998887643 233
Q ss_pred HHHHhcCCCceEEEEECCccchH-HHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCe--eEEEEecccccCCc
Q 006737 476 IALLKNHDGIGVLTLVGGTRFKV-DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL--KMLVLDEADHLLDL 549 (633)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~-~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l--~~LVIDEAD~Lld~ 549 (633)
. ...+.+....+.|...... -...+..+..+||++|.+.+.. . ...|+.| .++||||.|+|-+.
T Consensus 464 ~---kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----d---k~lLsKI~W~yMIIDEGHRmKNa 530 (1157)
T KOG0386|consen 464 P---KWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----D---KALLSKISWKYMIIDEGHRMKNA 530 (1157)
T ss_pred c---ccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----C---HHHHhccCCcceeecccccccch
Confidence 3 3344566655555433222 1223334678999999776643 2 2334544 58999999999753
No 216
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.90 E-value=0.13 Score=57.54 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=26.4
Q ss_pred CCeeEEEEecccccCCcC-hHHHHHHHHHHCC-CCCcEEEEeccCCh
Q 006737 533 MGLKMLVLDEADHLLDLG-FRKDVENIVDCLP-RRRQSLLFSATMPK 577 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~g-f~~~l~~Il~~lp-k~~Q~IlfSATl~~ 577 (633)
.++++|||||+|.+.... ....+..+++.+. ...++|+ +++.++
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iii-ts~~~p 255 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVL-TSDRPP 255 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEE-ECCCCH
Confidence 356789999999986432 2345555555443 3455544 555544
No 217
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.76 E-value=0.12 Score=54.74 Aligned_cols=117 Identities=15% Similarity=0.232 Sum_probs=62.6
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCC-CCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCcc
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTT-QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~-~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~ 495 (633)
.+++++|+|+.|||. ++++.........+ ....-|.++|-+|...-....|..+-..+.-. + ....
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP----~----~~~~ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP----Y----RPRD 128 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc----c----CCCC
Confidence 489999999999998 33444443221111 11223556777788777666666655443210 0 0000
Q ss_pred chHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcCh--HHHHHHHHHHCCCCCcE
Q 006737 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF--RKDVENIVDCLPRRRQS 568 (633)
Q Consensus 496 ~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf--~~~l~~Il~~lpk~~Q~ 568 (633)
...... .....+|. --.+++|||||+|.++.... ...+...++.+.+..++
T Consensus 129 ~~~~~~--------------~~~~~llr--------~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 129 RVAKLE--------------QQVLRLLR--------RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred CHHHHH--------------HHHHHHHH--------HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 000000 01123332 23788999999999986553 23344555565554443
No 218
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.73 E-value=0.18 Score=52.40 Aligned_cols=48 Identities=25% Similarity=0.389 Sum_probs=32.5
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~ 474 (633)
.+.++++.|++|+|||.... .+.+.+...+ . -++++++-+|+.++...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~-Ai~~~l~~~g----------~-sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAI-AIGNELLKAG----------I-SVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHcC----------C-eEEEEEHHHHHHHHHHH
Confidence 67799999999999997543 3344444322 2 35667888888776543
No 219
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.72 E-value=0.21 Score=51.04 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=26.9
Q ss_pred eeEEEEecccccCCc-ChHHHHHHHHHHCCC-CCcEEEEeccCChh
Q 006737 535 LKMLVLDEADHLLDL-GFRKDVENIVDCLPR-RRQSLLFSATMPKE 578 (633)
Q Consensus 535 l~~LVIDEAD~Lld~-gf~~~l~~Il~~lpk-~~Q~IlfSATl~~e 578 (633)
+++|||||+|.+... .....+..+++.+.. ....+++|++.++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~ 143 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPR 143 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChH
Confidence 468999999998643 345556666665432 23245556665544
No 220
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=94.68 E-value=0.9 Score=54.35 Aligned_cols=149 Identities=15% Similarity=0.211 Sum_probs=71.5
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCC---CceEEEEECCc
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD---GIGVLTLVGGT 494 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~---~i~v~~l~Gg~ 494 (633)
-+|+.---|-||||-. +..|+.++..... .--+||||+|..-+. ..+++|.++..... .+.|..+..-.
T Consensus 698 GcILAHcMGLGKTlQV-vtflhTvL~c~kl------g~ktaLvV~PlNt~~-NW~~EFekWm~~~e~~~~leV~eL~~vk 769 (1567)
T KOG1015|consen 698 GCILAHCMGLGKTLQV-VTFLHTVLLCDKL------GFKTALVVCPLNTAL-NWMNEFEKWMEGLEDDEKLEVSELATVK 769 (1567)
T ss_pred chHHHHhhcccceehh-hHHHHHHHHhhcc------CCceEEEEcchHHHH-HHHHHHHHhcccccccccceeehhhhcc
Confidence 3444444588999853 2333333332211 112599999976554 45677777765321 34444332222
Q ss_pred cchHHHH---HHhcCCCcEEEECchhhHHHHhcccCcc-----------cccCCeeEEEEecccccCCcChHHHHHHHHH
Q 006737 495 RFKVDQR---RLESDPCQILVATPGRLLDHIENKSGLS-----------VRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (633)
Q Consensus 495 ~~~~~~~---~l~~~~~dILIaTPgrLl~lL~~~~~~~-----------~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~ 560 (633)
....... .....+ -|.|.-...+..+- ...... +.-..-++||.||+|.|-+. ...+...+.
T Consensus 770 r~e~R~~~L~~W~~~g-gVmIiGYdmyRnLa-~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~ 845 (1567)
T KOG1015|consen 770 RPEERSYMLQRWQEDG-GVMIIGYDMYRNLA-QGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMN 845 (1567)
T ss_pred ChHHHHHHHHHHHhcC-CEEEEehHHHHHHh-cccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHH
Confidence 2122221 112222 34443333332222 111100 11224579999999998754 345555555
Q ss_pred HCCCCCcEEEEeccCChh
Q 006737 561 CLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 561 ~lpk~~Q~IlfSATl~~e 578 (633)
.+.-.++|++....|-+.
T Consensus 846 ~irtkRRI~LTGTPLQNN 863 (1567)
T KOG1015|consen 846 SIRTKRRIILTGTPLQNN 863 (1567)
T ss_pred HHHhheeEEeecCchhhh
Confidence 554455555544444444
No 221
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.53 E-value=0.08 Score=53.33 Aligned_cols=129 Identities=18% Similarity=0.220 Sum_probs=68.9
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCc
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~ 494 (633)
.|..+++.+++|+|||...+--+.+.+..... +|++++ +.+-..++.+.+..+.-
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge----------~vlyvs-~ee~~~~l~~~~~s~g~-------------- 72 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE----------KVLYVS-FEEPPEELIENMKSFGW-------------- 72 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------------EEEEE-SSS-HHHHHHHHHTTTS--------------
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC----------cEEEEE-ecCCHHHHHHHHHHcCC--------------
Confidence 45789999999999997543334444444121 376766 45555666666654421
Q ss_pred cchHHHHHHhcCCCcEEEEC----------chhhHHHHhcccCcccccCCeeEEEEecccccCC----cChHHHHHHHHH
Q 006737 495 RFKVDQRRLESDPCQILVAT----------PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD----LGFRKDVENIVD 560 (633)
Q Consensus 495 ~~~~~~~~l~~~~~dILIaT----------PgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld----~gf~~~l~~Il~ 560 (633)
+.. .....+...++=+. +..+...+... +.-...+.||||-...+.. ..++..+..+..
T Consensus 73 d~~---~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~----i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~ 145 (226)
T PF06745_consen 73 DLE---EYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREA----IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIK 145 (226)
T ss_dssp -HH---HHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHH----HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHH
T ss_pred cHH---HHhhcCCEEEEecccccccccccCHHHHHHHHHHH----HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHH
Confidence 001 01111111222122 22333333222 1112347999999998832 225667777777
Q ss_pred HCCCCCcEEEEeccC
Q 006737 561 CLPRRRQSLLFSATM 575 (633)
Q Consensus 561 ~lpk~~Q~IlfSATl 575 (633)
.+.....+++|++..
T Consensus 146 ~l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 146 FLKSRGVTTLLTSEM 160 (226)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCEEEEEEcc
Confidence 776666677777774
No 222
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=94.50 E-value=0.2 Score=57.86 Aligned_cols=152 Identities=15% Similarity=0.247 Sum_probs=96.3
Q ss_pred CcHHHHHHHHHHh----CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 402 MTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 402 pt~iQ~~aIp~il----~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
+..+|..-+.-+. .|=|-|+.-.-|-|||+- .+.+|.|+..... .-|| -|||+|.--|- +-..+
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQ-sisvlAhLaE~~n------IwGP-FLVVtpaStL~----NWaqE 635 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQ-SISVLAHLAETHN------IWGP-FLVVTPASTLH----NWAQE 635 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHH-HHHHHHHHHHhcc------CCCc-eEEeehHHHHh----HHHHH
Confidence 3455655554443 466788888999999975 4567788877643 2234 47888866554 34455
Q ss_pred HHhcCCCceEEEEECCccchHHHHHH--------hcCCCcEEEECchhhHH---HHhcccCcccccCCeeEEEEeccccc
Q 006737 478 LLKNHDGIGVLTLVGGTRFKVDQRRL--------ESDPCQILVATPGRLLD---HIENKSGLSVRLMGLKMLVLDEADHL 546 (633)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~~l--------~~~~~dILIaTPgrLl~---lL~~~~~~~~~Ls~l~~LVIDEAD~L 546 (633)
+..+++.++++-+.|+.......+.+ ...+.||+|+|...+.. ++.. -.-.|.|+|||..+
T Consensus 636 isrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk--------vKWQYMILDEAQAI 707 (1185)
T KOG0388|consen 636 ISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK--------VKWQYMILDEAQAI 707 (1185)
T ss_pred HHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh--------hhhhheehhHHHHh
Confidence 55667789999899987644333221 23468999998766532 2221 24568999999988
Q ss_pred CCcChHHHHHHHHHHCCCCCcEEEEeccCC
Q 006737 547 LDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 547 ld~gf~~~l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
-.. ....+..++..-. +-.++++.|--
T Consensus 708 KSS-sS~RWKtLLsF~c--RNRLLLTGTPI 734 (1185)
T KOG0388|consen 708 KSS-SSSRWKTLLSFKC--RNRLLLTGTPI 734 (1185)
T ss_pred hhh-hhhHHHHHhhhhc--cceeeecCCcc
Confidence 532 4455566655432 33567777753
No 223
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.49 E-value=0.27 Score=55.26 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=28.6
Q ss_pred cCCeeEEEEecccccCCc-ChHHHHHHHHHHCCC-CCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDL-GFRKDVENIVDCLPR-RRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~-gf~~~l~~Il~~lpk-~~Q~IlfSATl~~e 578 (633)
+.++++|||||+|.+... .....+..+++.+.. ..|+|+.|-..|..
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~ 252 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPEL 252 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 346789999999988643 244566666665433 44555544444434
No 224
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.41 E-value=0.2 Score=55.32 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=25.7
Q ss_pred CeeEEEEecccccCCcC-hHHHHHHHHHHC-CCCCcEEEEeccCCh
Q 006737 534 GLKMLVLDEADHLLDLG-FRKDVENIVDCL-PRRRQSLLFSATMPK 577 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~g-f~~~l~~Il~~l-pk~~Q~IlfSATl~~ 577 (633)
.+++|||||+|.+.... ....+..+++.+ ....++|+ +++.++
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iii-ts~~~p 243 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVL-TSDRPP 243 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEE-ecCCCH
Confidence 46789999999886542 234455555543 23456555 555443
No 225
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.35 E-value=0.085 Score=55.85 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=35.3
Q ss_pred ccCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 531 RLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 531 ~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
.....++|||||||.|... -...+.+.++..++...+|+.+..++.
T Consensus 126 ~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChhh
Confidence 3556789999999998743 566778888887778888888776544
No 226
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.30 E-value=0.087 Score=62.13 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.+++-|.+++.+. ...++|.|..|||||.+..- -+.+++.... .++-++|+|+.|+..|.++.+++..++.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~-Ria~Li~~~~------v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITN-KIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHH-HHHHHHHhcC------CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4789999998753 45789999999999987433 3344443211 1223599999999999999999987764
No 227
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.30 E-value=0.3 Score=63.92 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=79.5
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~g--rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
.+++-|..++..++.. +=+++.++.|+|||.+ +-.+..+.... +.++++++||-..+..+.+.....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~~---------G~~V~~lAPTgrAA~~L~e~~g~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASEQ---------GYEIQIITAGSLSAQELRQKIPRL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHhcch
Confidence 5889999999999876 4678999999999974 33333343321 236999999998877665442211
Q ss_pred HhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHH
Q 006737 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (633)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~I 558 (633)
.. ........+.. ..-..|..+|+ . . ...+..-++||||||-++... .+..+
T Consensus 498 A~--------------Ti~~~l~~l~~---~~~~~tv~~fl---~-~---~~~l~~~~vlIVDEAsMl~~~----~~~~L 549 (1960)
T TIGR02760 498 AS--------------TFITWVKNLFN---DDQDHTVQGLL---D-K---SSPFSNKDIFVVDEANKLSNN----ELLKL 549 (1960)
T ss_pred hh--------------hHHHHHHhhcc---cccchhHHHhh---c-c---cCCCCCCCEEEEECCCCCCHH----HHHHH
Confidence 00 00000111111 11112222232 1 1 123556789999999887643 66667
Q ss_pred HHHC-CCCCcEEEEec
Q 006737 559 VDCL-PRRRQSLLFSA 573 (633)
Q Consensus 559 l~~l-pk~~Q~IlfSA 573 (633)
+... +.+.++|++-=
T Consensus 550 l~~a~~~garvVlvGD 565 (1960)
T TIGR02760 550 IDKAEQHNSKLILLND 565 (1960)
T ss_pred HHHHhhcCCEEEEEcC
Confidence 6655 35678887754
No 228
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.27 E-value=0.61 Score=52.53 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=28.6
Q ss_pred CCCCCcHHHHHHHHH----HhCCCcEEEEccCCCCchhhhHHHHHH
Q 006737 398 GYIQMTRVQEATLSA----CLEGKDAVVKAKTGTGKSIAFLLPAIE 439 (633)
Q Consensus 398 g~~~pt~iQ~~aIp~----il~grDvLv~ApTGSGKTlaylLPiL~ 439 (633)
-|...+|-|-.-+-. +-++.++++.+|+|+|||.+.+--++.
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~a 58 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIA 58 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHH
Confidence 455667777554433 334668999999999999875544443
No 229
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.16 E-value=0.73 Score=54.69 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=28.3
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
...+++||||+|.|.... .+.+.++++.-+....+|+ ++|-+..
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FIL-aTtd~~K 161 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFIL-ATTDPQK 161 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEE-EECChhh
Confidence 357899999999987543 3455566666665554444 4454444
No 230
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.09 E-value=0.23 Score=57.57 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=30.5
Q ss_pred CCeeEEEEecccccCCcC-hHHHHHHHHHHCCC-CCcEEEEeccCChhh
Q 006737 533 MGLKMLVLDEADHLLDLG-FRKDVENIVDCLPR-RRQSLLFSATMPKEL 579 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~g-f~~~l~~Il~~lpk-~~Q~IlfSATl~~el 579 (633)
.++++||||++|.+.... ....+..+++.+.. +.++|+.|-..|.++
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 457889999999986543 34556667665543 567776555544443
No 231
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.05 E-value=0.36 Score=56.37 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=26.1
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
...+++||||+|.|....+ +.+.++++.-+.++.+|+.|
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEe
Confidence 4678999999999975433 44555566555566555554
No 232
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.02 E-value=0.35 Score=51.34 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=27.5
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCC
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
...++|||||+|.+... ....+..+++..+...++|+ +++-+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il-~~~~~ 165 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII-ATRQP 165 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE-EeCCh
Confidence 45678999999988642 44566677776666666555 44433
No 233
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.01 E-value=0.48 Score=56.90 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=23.8
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCC-CCCcEEEEecc
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSLLFSAT 574 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp-k~~Q~IlfSAT 574 (633)
..+.+|||||+|.|... ....+..++.... ...+++++..+
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHHhhccCCeEEEEEec
Confidence 34678999999999864 2344445554322 24455544433
No 234
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.97 E-value=0.018 Score=56.68 Aligned_cols=126 Identities=24% Similarity=0.238 Sum_probs=53.6
Q ss_pred EEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH
Q 006737 420 VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499 (633)
Q Consensus 420 Lv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~ 499 (633)
|+.|+-|-|||.+.-+.+...+.. ...+++|.+|+.+-+..+++.+..-+... +++. ........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~----~~~~~~~~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----------GKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKE----EKKKRIGQ 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----------cCceEEEecCCHHHHHHHHHHHHhhcccc-cccc----cccccccc
Confidence 578999999998654432211111 11359999999999888877665443321 1111 00000000
Q ss_pred HHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 500 ~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
...+......|-+..|..+... ....++||||||=.+- .+.+..++.. ...++||.|+.--
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~----------~~~~DlliVDEAAaIp----~p~L~~ll~~----~~~vv~stTi~GY 126 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAE----------KPQADLLIVDEAAAIP----LPLLKQLLRR----FPRVVFSTTIHGY 126 (177)
T ss_dssp -------CCC--B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEBSST
T ss_pred ccccccccceEEEECCHHHHhC----------cCCCCEEEEechhcCC----HHHHHHHHhh----CCEEEEEeecccc
Confidence 0111112346666777655321 1235789999997764 3455555433 3477888888653
No 235
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.95 E-value=0.27 Score=59.16 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=31.1
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
....+++||||||.|... -.+.+.++++..+..+.+|+.+ |-+..
T Consensus 118 ~~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t-t~~~k 162 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT-TEPDK 162 (824)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe-CChhh
Confidence 356789999999999754 4456667777777666666654 54444
No 236
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.94 E-value=0.26 Score=49.89 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=33.3
Q ss_pred cCCeeEEEEecccccCCcC-hHHHHHHHHHHCC-CCCcEEEEeccCChhhh
Q 006737 532 LMGLKMLVLDEADHLLDLG-FRKDVENIVDCLP-RRRQSLLFSATMPKELV 580 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~g-f~~~l~~Il~~lp-k~~Q~IlfSATl~~el~ 580 (633)
+..+++||||.+|.+.... ....+..+++.+. ...|+|+.|...|.++.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc
Confidence 4578899999999987542 4556666666543 35677777777777653
No 237
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.89 E-value=0.61 Score=54.38 Aligned_cols=139 Identities=19% Similarity=0.227 Sum_probs=84.6
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcC-CCceEEEEEC
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLVG 492 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~-~~i~v~~l~G 492 (633)
...+-.++..|--.|||.... +++..++... .+.+++|++|.+..+..+++++...+... +...+..+.|
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s~--------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG 322 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALATF--------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG 322 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHhC--------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC
Confidence 455678888999999998644 6665554432 24679999999999999999998876532 1111222222
Q ss_pred CccchHHHHHHhcCC-CcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCC-CCCcEEE
Q 006737 493 GTRFKVDQRRLESDP-CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSLL 570 (633)
Q Consensus 493 g~~~~~~~~~l~~~~-~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp-k~~Q~Il 570 (633)
... ...+.++. ..|.++|- .+.. ...=..+++||||||+.+-+. .+..|+-.+. .+.++|+
T Consensus 323 -e~I---~i~f~nG~kstI~FaSa-------rntN--siRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ 385 (738)
T PHA03368 323 -ETI---SFSFPDGSRSTIVFASS-------HNTN--GIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIF 385 (738)
T ss_pred -cEE---EEEecCCCccEEEEEec-------cCCC--CccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEE
Confidence 111 00111111 24555532 1110 122236889999999998764 4444443332 3799999
Q ss_pred EeccCChh
Q 006737 571 FSATMPKE 578 (633)
Q Consensus 571 fSATl~~e 578 (633)
+|.|.+..
T Consensus 386 ISS~Ns~~ 393 (738)
T PHA03368 386 VSSTNTGK 393 (738)
T ss_pred EecCCCCc
Confidence 99998765
No 238
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.78 E-value=0.29 Score=62.33 Aligned_cols=63 Identities=25% Similarity=0.352 Sum_probs=45.2
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCCchhhh--HHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHH
Q 006737 401 QMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAF--LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~g--rDvLv~ApTGSGKTlay--lLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~ 472 (633)
.+++-|..++..++.. +-++|++..|+|||... ++-++..+... .+..++.++||-..+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~---------~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES---------ERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc---------cCceEEEEechHHHHHHHH
Confidence 6899999999999965 67899999999999853 22222222111 1245888999988887653
No 239
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=93.77 E-value=0.0075 Score=66.67 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=89.1
Q ss_pred eeeeeccCCCCccCCCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc---CCCCCCCCch
Q 006737 21 RVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLFDKADPDSE---TNQHKPMSPD 97 (633)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 97 (633)
-++++.++|+++||+..+..|+|..+...+.|..-.+++....+-|.+++.+|.++.+...+...-. ..+..+..++
T Consensus 121 Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~ 200 (543)
T KOG0342|consen 121 DVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD 200 (543)
T ss_pred cceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999776443221 2245556778
Q ss_pred HHHHHHHHhhcccCcccccCCCCCCCc
Q 006737 98 EHVKALADRFMKEGAEDLWNEDDGPVK 124 (633)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (633)
...|.....+.+||....|-+|.++..
T Consensus 201 kl~k~~niliATPGRLlDHlqNt~~f~ 227 (543)
T KOG0342|consen 201 KLVKGCNILIATPGRLLDHLQNTSGFL 227 (543)
T ss_pred HhhccccEEEeCCchHHhHhhcCCcch
Confidence 888889999999999999999998844
No 240
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.74 E-value=0.3 Score=56.84 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=27.6
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
....++|||||+|.|... -.+.+.+.++..+..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 457789999999999753 3445555666666666666654
No 241
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.66 E-value=0.32 Score=49.02 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=26.8
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCc-EEEEeccCCh
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ-SLLFSATMPK 577 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q-~IlfSATl~~ 577 (633)
..++|||||+|.+... -...+..+++.+..... +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 3457999999987543 34445555554433333 5777777654
No 242
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.62 E-value=0.32 Score=53.37 Aligned_cols=135 Identities=14% Similarity=0.201 Sum_probs=73.5
Q ss_pred EEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHH-HHHHHHHHHHHHHhcCCCceEEEEECCccch
Q 006737 419 AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE-LASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (633)
Q Consensus 419 vLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTRe-La~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~ 497 (633)
.++.+..|||||.+.++-++..++... ++.++||+-|+.. |..-++..+...+... ++....-.....+
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~- 73 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK--------KQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSM- 73 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC--------CCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCcc-
Confidence 578899999999998887777776641 1246899999987 6666677777665433 2221111111100
Q ss_pred HHHHHHhcCCCcEEEECc-hhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCC--CCCcEEEEecc
Q 006737 498 VDQRRLESDPCQILVATP-GRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP--RRRQSLLFSAT 574 (633)
Q Consensus 498 ~~~~~l~~~~~dILIaTP-grLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp--k~~Q~IlfSAT 574 (633)
...+...+..|++..- ..... + .....+.+++||||..+... .+..++..+. ...+.|++|.|
T Consensus 74 --~i~~~~~g~~i~f~g~~d~~~~-i-------k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~N 139 (396)
T TIGR01547 74 --EIKILNTGKKFIFKGLNDKPNK-L-------KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSN 139 (396)
T ss_pred --EEEecCCCeEEEeecccCChhH-h-------hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcC
Confidence 0011111234555432 11111 1 12334689999999998543 3333333332 22224666766
Q ss_pred CCh
Q 006737 575 MPK 577 (633)
Q Consensus 575 l~~ 577 (633)
-..
T Consensus 140 P~~ 142 (396)
T TIGR01547 140 PES 142 (396)
T ss_pred cCC
Confidence 543
No 243
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.60 E-value=0.43 Score=53.54 Aligned_cols=45 Identities=16% Similarity=0.332 Sum_probs=26.1
Q ss_pred CeeEEEEecccccCCcC-hHHHHHHHHHHCCC-CCcEEEEeccCChh
Q 006737 534 GLKMLVLDEADHLLDLG-FRKDVENIVDCLPR-RRQSLLFSATMPKE 578 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~g-f~~~l~~Il~~lpk-~~Q~IlfSATl~~e 578 (633)
.+++|||||+|.+.+.. ....+..+++.+.. ..|+|+.|-.-|..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~ 240 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHH
Confidence 46789999999887542 33445555554433 34555544444444
No 244
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.59 E-value=0.55 Score=49.62 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=27.4
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
..++|||||+|.+........+..+++..+..+++|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 456899999999844335566677777777777666544
No 245
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.57 E-value=0.26 Score=58.18 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=52.5
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
-..+++-|+.++-. ...+++|.|..|||||.+.+ .-+..++.... ..+-++|+|+.|+..|..+.+++...
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~-~r~ayLl~~~~------~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLV-ARAGWLLARGQ------AQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHH-HHHHHHHHhCC------CCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 35799999999864 33578999999999998643 33333443221 11236999999999999999988776
Q ss_pred Hh
Q 006737 479 LK 480 (633)
Q Consensus 479 ~~ 480 (633)
+.
T Consensus 265 lg 266 (684)
T PRK11054 265 LG 266 (684)
T ss_pred cC
Confidence 54
No 246
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.47 E-value=1.5 Score=51.51 Aligned_cols=153 Identities=8% Similarity=0.111 Sum_probs=83.5
Q ss_pred CcHHHHHHHHHH---hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 402 MTRVQEATLSAC---LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 402 pt~iQ~~aIp~i---l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
|+|.=.+-|..+ +..+-.++.+|-|.|||.+..+.++ .+... .+.+++|++|...-+.++++.+...
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f---------~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF---------LEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh---------cCCeEEEECCChhhHHHHHHHHHHH
Confidence 344433334333 3456678889999999987544433 22221 1246999999999999999988888
Q ss_pred HhcCC------C-ceEEEEECCcc-chHHH-HHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCc
Q 006737 479 LKNHD------G-IGVLTLVGGTR-FKVDQ-RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (633)
Q Consensus 479 ~~~~~------~-i~v~~l~Gg~~-~~~~~-~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~ 549 (633)
+.... . -.+..+.|+.. ..... ...+.++..|.+++-. .+ ...-...++||||||..+-.
T Consensus 240 le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~---s~RG~~~DLLIVDEAAfI~~- 308 (752)
T PHA03333 240 VHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PN---AARGQNPDLVIVDEAAFVNP- 308 (752)
T ss_pred HHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CC---CcCCCCCCEEEEECcccCCH-
Confidence 75321 1 11222222211 00000 0000011223332211 01 11223568999999999875
Q ss_pred ChHHHHHHHHHHCC-CCCcEEEEeccCChh
Q 006737 550 GFRKDVENIVDCLP-RRRQSLLFSATMPKE 578 (633)
Q Consensus 550 gf~~~l~~Il~~lp-k~~Q~IlfSATl~~e 578 (633)
..+..|+-.+. ...+++++|.+.+..
T Consensus 309 ---~~l~aIlP~l~~~~~k~IiISS~~~~~ 335 (752)
T PHA03333 309 ---GALLSVLPLMAVKGTKQIHISSPVDAD 335 (752)
T ss_pred ---HHHHHHHHHHccCCCceEEEeCCCCcc
Confidence 35555555444 467888889887554
No 247
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.45 E-value=1.3 Score=51.56 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=29.5
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
....+++||||||.|... -.+.+.++++..+...-+|+.+ |-++.
T Consensus 116 ~~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t-te~~k 160 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT-TEPEK 160 (584)
T ss_pred cCCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe-CChHh
Confidence 456789999999999754 3445566666666555555544 55444
No 248
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.42 E-value=0.36 Score=54.22 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=28.8
Q ss_pred CCeeEEEEecccccCCcC-hHHHHHHHHHHCC-CCCcEEEEeccCChhh
Q 006737 533 MGLKMLVLDEADHLLDLG-FRKDVENIVDCLP-RRRQSLLFSATMPKEL 579 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~g-f~~~l~~Il~~lp-k~~Q~IlfSATl~~el 579 (633)
.++++|||||+|.+.... ....+..+++.+. ...|+|+.|-+.|.++
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l 249 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDL 249 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHH
Confidence 467799999999987532 3455556655432 3456655554445543
No 249
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.37 E-value=0.47 Score=51.73 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCchhh
Q 006737 417 KDAVVKAKTGTGKSIA 432 (633)
Q Consensus 417 rDvLv~ApTGSGKTla 432 (633)
.+++++||+|+|||.+
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999985
No 250
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.32 E-value=0.29 Score=50.30 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHHh----CCC-cEEEEccCCCCchhhh
Q 006737 401 QMTRVQEATLSACL----EGK-DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 401 ~pt~iQ~~aIp~il----~gr-DvLv~ApTGSGKTlay 433 (633)
.+++.+..++..+. .+. .++++|++|+|||...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 34555555555443 223 6889999999999743
No 251
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.32 E-value=0.52 Score=50.03 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=35.0
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcC
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATS 446 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~ 446 (633)
.+.+|++|++++-+.+.+.. ...=++|.+|||||||.. +..++.++.+...
T Consensus 104 ~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~~~ 154 (353)
T COG2805 104 KIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKHKA 154 (353)
T ss_pred cCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhccCC
Confidence 34568888888877663322 112488999999999976 4567777766543
No 252
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.19 E-value=0.63 Score=47.51 Aligned_cols=53 Identities=17% Similarity=0.073 Sum_probs=34.3
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
.|..+++.|++|+|||...+--+.+.+... -.+||++ +.+-..|+.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~g-----------e~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG-----------EPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-----------CcEEEEE-eeCCHHHHHHHHHHhC
Confidence 467899999999999974332233333211 1377776 5667777777776653
No 253
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=93.18 E-value=0.41 Score=56.32 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=50.2
Q ss_pred CCcHHHHHHHHHHhCC-----CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACLEG-----KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~g-----rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.|++.|..++..+.++ +..++.+.||||||+... .++..+ . ..+|||+|+..+|.|+++.+
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~---~----------r~vLIVt~~~~~A~~l~~dL 77 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL---Q----------RPTLVLAHNKTLAAQLYSEF 77 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh---C----------CCEEEEECCHHHHHHHHHHH
Confidence 6899999999887543 257799999999998532 222211 1 13899999999999999999
Q ss_pred HHHHh
Q 006737 476 IALLK 480 (633)
Q Consensus 476 ~~l~~ 480 (633)
..++.
T Consensus 78 ~~~~~ 82 (652)
T PRK05298 78 KEFFP 82 (652)
T ss_pred HHhcC
Confidence 88864
No 254
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.14 E-value=0.94 Score=53.63 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=86.7
Q ss_pred HHHcCCCCCcHHHHHHHHHHhCCC--cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH
Q 006737 394 LTAAGYIQMTRVQEATLSACLEGK--DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (633)
Q Consensus 394 L~~~g~~~pt~iQ~~aIp~il~gr--DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi 471 (633)
|.....+....-|.+.+..++..+ -+++.|.-|-|||.+.-|.+.. +..... +..++|++|+.+-+..+
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~~--------~~~iiVTAP~~~nv~~L 277 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLAG--------SVRIIVTAPTPANVQTL 277 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhcC--------CceEEEeCCCHHHHHHH
Confidence 444445555555666666666654 5888999999999987665532 222111 24699999999999988
Q ss_pred HHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcCh
Q 006737 472 AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551 (633)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf 551 (633)
+..+.+-+... +.+-.+...... ...........|=+-+|.... . .-++||||||=.|-
T Consensus 278 f~fa~~~l~~l-g~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~------------~-~~DllvVDEAAaIp---- 336 (758)
T COG1444 278 FEFAGKGLEFL-GYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ------------E-EADLLVVDEAAAIP---- 336 (758)
T ss_pred HHHHHHhHHHh-CCcccccccccc---ceeeecCCceeEEeeCcchhc------------c-cCCEEEEehhhcCC----
Confidence 87776655433 222111111000 000011111234445553321 1 15689999997764
Q ss_pred HHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 552 RKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 552 ~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
.+.+.+++... +.++||.|+.--
T Consensus 337 lplL~~l~~~~----~rv~~sTTIhGY 359 (758)
T COG1444 337 LPLLHKLLRRF----PRVLFSTTIHGY 359 (758)
T ss_pred hHHHHHHHhhc----CceEEEeeeccc
Confidence 45666666554 478888888543
No 255
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=93.14 E-value=0.32 Score=58.18 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=89.8
Q ss_pred CCCcHHHHHHHHHHh-----CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACL-----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il-----~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~ 474 (633)
..+.++|...+..+. .+.+.++...-|.|||+..+.-+.. +....... ...+||++|+- ++.+..++
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~~~------~~~~liv~p~s-~~~nw~~e 408 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIKVY------LGPALIVVPAS-LLSNWKRE 408 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhcccCC------CCCeEEEecHH-HHHHHHHH
Confidence 456677887776644 2557788899999999764433322 22221110 12488999974 44555666
Q ss_pred HHHHHhcCCCce-EEEEECCccc----hHHHHHHhcCC----CcEEEECchhhHHHHhcccCcccccCCeeEEEEecccc
Q 006737 475 AIALLKNHDGIG-VLTLVGGTRF----KVDQRRLESDP----CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (633)
Q Consensus 475 l~~l~~~~~~i~-v~~l~Gg~~~----~~~~~~l~~~~----~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~ 545 (633)
+.++. +.++ +...+|.... ......+.... .+|+++|-+.|...+.... .+.-....++|+||||.
T Consensus 409 ~~k~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~--~l~~~~~~~~v~DEa~~ 483 (866)
T COG0553 409 FEKFA---PDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHG--GLKKIEWDRVVLDEAHR 483 (866)
T ss_pred HhhhC---ccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHH--HHhhceeeeeehhhHHH
Confidence 65554 3555 6777776541 22222222211 5899999888877321110 12234567999999999
Q ss_pred cCCcChHHHHHHHHHHCCCCCcEEEEeccC
Q 006737 546 LLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (633)
Q Consensus 546 Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl 575 (633)
+-+.. ......+. .++.... +++|.|.
T Consensus 484 ikn~~-s~~~~~l~-~~~~~~~-~~LtgTP 510 (866)
T COG0553 484 IKNDQ-SSEGKALQ-FLKALNR-LDLTGTP 510 (866)
T ss_pred Hhhhh-hHHHHHHH-HHhhcce-eeCCCCh
Confidence 76432 22222222 3332232 6667765
No 256
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.12 E-value=0.31 Score=57.21 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 402 pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
+++-|.+++.+ ....++|.|..|||||.+.+- -+.+++.... ..+-++|+|+.|+..|.++.+.+.+.+.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~-ri~~ll~~~~------~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITN-KIAYLIQNCG------YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHH-HHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68899998865 346899999999999986443 3334443211 1123589999999999999999987764
No 257
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.11 E-value=0.51 Score=60.77 Aligned_cols=65 Identities=23% Similarity=0.263 Sum_probs=44.7
Q ss_pred CCCcHHHHHHHHHHhCC--CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~g--rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi 471 (633)
..+++.|..++..++.+ +-++|++..|+|||.. +-.+..++..... ..+..++.++||--.|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~--l~~v~~~~~~l~~-----~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ--FRAVMSAVNTLPE-----SERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH--HHHHHHHHHHhhc-----ccCceEEEECCcHHHHHHH
Confidence 36899999999999985 4688999999999975 2222222221100 0124588899998888654
No 258
>PRK09183 transposase/IS protein; Provisional
Probab=93.08 E-value=0.48 Score=49.27 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=17.7
Q ss_pred HhCCCcEEEEccCCCCchhhh
Q 006737 413 CLEGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlay 433 (633)
+..+.++++.||+|+|||...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 456889999999999999743
No 259
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.02 E-value=0.18 Score=59.94 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
..+++-|.+++.+. ...++|.|..|||||.+-. .-+.++..... .++-++|+|+-|+..|.++.+++.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~-~Ria~Li~~~~------v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLV-HRIAWLMQVEN------ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHH-HHHHHHHHcCC------CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 35899999998753 4589999999999998643 33334443211 122359999999999999999998886
Q ss_pred h
Q 006737 480 K 480 (633)
Q Consensus 480 ~ 480 (633)
.
T Consensus 79 ~ 79 (721)
T PRK11773 79 G 79 (721)
T ss_pred c
Confidence 4
No 260
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.95 E-value=0.28 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=17.7
Q ss_pred HHhCCCcEEEEccCCCCchhhh
Q 006737 412 ACLEGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 412 ~il~grDvLv~ApTGSGKTlay 433 (633)
-+..|.-+++.|++|+|||...
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~ 47 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFL 47 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHH
Confidence 3456778999999999999743
No 261
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.95 E-value=0.5 Score=42.42 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=12.5
Q ss_pred EEEEccCCCCchhh
Q 006737 419 AVVKAKTGTGKSIA 432 (633)
Q Consensus 419 vLv~ApTGSGKTla 432 (633)
+++.||+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 68999999999974
No 262
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.78 E-value=0.92 Score=53.44 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=28.4
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
+...++|||||+|.|... -...+.++++..+..+.+|+.+ |-+.
T Consensus 117 ~gk~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~fILaT-td~~ 160 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT-TDPH 160 (709)
T ss_pred hCCcEEEEEECccccCHH-HHHHHHHHHHhCCCCcEEEEEe-CCcc
Confidence 456789999999987643 3345666666666666565544 4333
No 263
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.33 Score=53.16 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=21.9
Q ss_pred HHHHHhCCC--cEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 409 TLSACLEGK--DAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 409 aIp~il~gr--DvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
..|.+.++. |+++.|+||+|||++.. -++..+..
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~-~v~~~l~~ 68 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATVK-FVMEELEE 68 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHHH-HHHHHHHh
Confidence 344444443 79999999999998633 24444433
No 264
>PRK05973 replicative DNA helicase; Provisional
Probab=92.67 E-value=0.58 Score=48.23 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=47.3
Q ss_pred cCCCHHHHHHHHHcCCCC----------CcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCC
Q 006737 384 CGISPLTIKALTAAGYIQ----------MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLV 453 (633)
Q Consensus 384 l~L~~~Ll~~L~~~g~~~----------pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~ 453 (633)
+.+++.+-+...+.||.. +||... +..-+..|.-++|.|++|+|||...+--+.+.+ ..+
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~G-------- 92 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-KSG-------- 92 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-hcC--------
Confidence 345555555555666654 455222 344455677889999999999974333233322 221
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 454 PPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 454 ~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
-.++|++ .-+-..|+.+.+..+
T Consensus 93 --e~vlyfS-lEes~~~i~~R~~s~ 114 (237)
T PRK05973 93 --RTGVFFT-LEYTEQDVRDRLRAL 114 (237)
T ss_pred --CeEEEEE-EeCCHHHHHHHHHHc
Confidence 1366664 344456777776655
No 265
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.56 E-value=0.91 Score=46.34 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=31.5
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
..|.-+++.+++|+|||...+ -++..+.+.. -++++++ +-+-..++.+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~-~~~~~~~~~g----------~~~~yi~-~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQ-RLAYGFLQNG----------YSVSYVS-TQLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHH-HHHHHHHhCC----------CcEEEEe-CCCCHHHHHHHHHHh
Confidence 457789999999999997522 2233333221 2477777 444445555555444
No 266
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.52 E-value=0.29 Score=57.60 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=49.4
Q ss_pred CCcHHHHHHHHHHhCC-----CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACLEG-----KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~g-----rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.|+-.|..+|..+.++ +..++.|.||||||+...- +++.+ .. .+|||+|+..+|.|++..+
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~---~~----------p~Lvi~~n~~~A~ql~~el 74 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV---NR----------PTLVIAHNKTLAAQLYNEF 74 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh---CC----------CEEEEECCHHHHHHHHHHH
Confidence 5788888888877543 3667999999999985321 22221 11 2899999999999999999
Q ss_pred HHHHh
Q 006737 476 IALLK 480 (633)
Q Consensus 476 ~~l~~ 480 (633)
+.++.
T Consensus 75 ~~f~p 79 (655)
T TIGR00631 75 KEFFP 79 (655)
T ss_pred HHhCC
Confidence 99864
No 267
>PF13173 AAA_14: AAA domain
Probab=92.48 E-value=0.81 Score=41.94 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=27.3
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccC
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl 575 (633)
.-.+|||||+|.+-+ +...+..+.... ++.++++.+...
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccch
Confidence 445799999999864 577777777755 456676654443
No 268
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.45 E-value=0.82 Score=50.04 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=27.9
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEecc
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
....++|||||||.|.. .-.+.+.++++..+....+|++|..
T Consensus 139 ~~~~kVviIDead~m~~-~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA-NAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCH-HHHHHHHHHHhcCCCCeEEEEEECC
Confidence 45678999999999863 3455666666665555555554443
No 269
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.45 E-value=2.2 Score=48.58 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=27.9
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
....+++||||+|.|.... .+.+.+.++.-|....+|+ .+|-...
T Consensus 114 ~~~~KVvIIDEah~Ls~~A-~NaLLK~LEePp~~v~fIl-atte~~K 158 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSA-FNALLKTLEEPAPHVKFIL-ATTEVKK 158 (491)
T ss_pred cCCceEEEEeChHhCCHHH-HHHHHHHHhCCCCCeEEEE-EeCChHH
Confidence 4578899999999987542 3445555555555554444 4454443
No 270
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.29 E-value=1.2 Score=48.02 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=30.2
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEec
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSA 573 (633)
....+++|||+||.|... -.+.+.++++.-|.++.+|++|.
T Consensus 111 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 111 YGIAQVVIVDPADAINRA-ACNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred cCCcEEEEeccHhhhCHH-HHHHHHHHhhCCCCCCeEEEEEC
Confidence 456789999999999643 45666777777676776666654
No 271
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.24 E-value=1.5 Score=46.16 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=36.1
Q ss_pred ECchhhHHHHhcccCcccccCCeeEEEEecccccCC-cChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 513 ATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 513 aTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld-~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
.+|..|...+..- ......++||||-+=+... ......+..++....+..-++++|||....
T Consensus 137 ~~~~~l~~~l~~l----~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 137 RDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred CCHHHHHHHHHHH----HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 3555555554321 1123578899999877642 224445555555555554467789987654
No 272
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.22 E-value=0.38 Score=55.57 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=73.0
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHH-HHHHH
Q 006737 401 QMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA-AEAIA 477 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~g--rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~-~~l~~ 477 (633)
..+|+|.+.+..+... +.|+++.++-+|||.+.+. ++-....... .-+|++.||.++|.... ..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~~P---------~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSIDQDP---------GPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEEeCC---------CCEEEEEEcHHHHHHHHHHHHHH
Confidence 5688899888887764 5899999999999984333 2222222211 23899999999999876 56777
Q ss_pred HHhcCCCceEEEEE---CCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccC
Q 006737 478 LLKNHDGIGVLTLV---GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 478 l~~~~~~i~v~~l~---Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Ll 547 (633)
++...+.++-.+.- .........+.+. + ..|.++.-.. ...+.-..+++|++||+|.+.
T Consensus 86 mi~~sp~l~~~~~~~~~~~~~~t~~~k~f~-g-g~l~~~ga~S---------~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 86 MIRASPVLRRKLSPSKSRDSGNTILYKRFP-G-GFLYLVGANS---------PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHhCHHHHHHhCchhhcccCCchhheecC-C-CEEEEEeCCC---------CcccccCCcCEEEEechhhcc
Confidence 76655443311111 0011111111111 2 2333332111 112334578999999999985
No 273
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.22 E-value=0.51 Score=48.83 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.8
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
.++++.||+|+|||...
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47999999999999754
No 274
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.13 E-value=0.36 Score=51.90 Aligned_cols=68 Identities=25% Similarity=0.350 Sum_probs=42.9
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHH
Q 006737 390 TIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (633)
Q Consensus 390 Ll~~L~~~g~~~pt~iQ~~aIp~-il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa 468 (633)
.+..|.+.|+ +++.|...+.. +..+++++++|+||||||.. +-.++..+.... +..++++|-.+.||.
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~--------~~~rivtIEd~~El~ 191 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD--------PTERVFIIEDTGEIQ 191 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC--------CCceEEEEcCCCccc
Confidence 3455555564 56777777765 45677999999999999963 333443332111 123577777777763
No 275
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.13 E-value=0.6 Score=52.44 Aligned_cols=52 Identities=31% Similarity=0.287 Sum_probs=32.2
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
.|.-+++.+++|+|||...+- ++..+... +-++||+. +.+...|+...+..+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq-~a~~~a~~----------g~~vlYvs-~Ees~~qi~~ra~rl 130 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQ-VAARLAAA----------GGKVLYVS-GEESASQIKLRAERL 130 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHH-HHHHHHhc----------CCeEEEEE-ccccHHHHHHHHHHc
Confidence 466789999999999974322 22222221 12477876 455666776666554
No 276
>PRK04195 replication factor C large subunit; Provisional
Probab=92.09 E-value=1.2 Score=50.58 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=27.0
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC---CCcEEEEccCCCCchhh
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLE---GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~---grDvLv~ApTGSGKTla 432 (633)
++|+++-..+..++.|... +..... .+.+++.||+|+|||.+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~------------l~~~~~g~~~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREW------------IESWLKGKPKKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCHHHhcCCHHHHHHHHHH------------HHHHhcCCCCCeEEEECCCCCCHHHH
Confidence 3466766666666655442 011112 46799999999999974
No 277
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.03 E-value=2 Score=50.41 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=27.8
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
...+++||||||+|... -.+.+.++++.-|....+|+. .|-+..
T Consensus 118 g~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FIL~-Tt~~~k 161 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA-TTDPQK 161 (647)
T ss_pred CCCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEEEe-cCCccc
Confidence 46789999999998754 344555566665555545443 444443
No 278
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.94 E-value=0.43 Score=51.40 Aligned_cols=66 Identities=20% Similarity=0.302 Sum_probs=40.4
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHH
Q 006737 392 KALTAAGYIQMTRVQEATLSACL-EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (633)
Q Consensus 392 ~~L~~~g~~~pt~iQ~~aIp~il-~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa 468 (633)
..+.+.|. +++.|...|..+. .+.+++|+|+||||||.. +-.++..+..... .-+++++-.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~--------~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASAP--------EDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCC--------CceEEEecCCcccc
Confidence 34445554 6677777766544 466999999999999973 2233333322111 12567777777763
No 279
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.94 E-value=1.5 Score=48.28 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
++-+++++|||+|||...
T Consensus 206 ~~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTL 223 (407)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567889999999999754
No 280
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=91.90 E-value=0.55 Score=52.66 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCCchhhh
Q 006737 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 402 pt~iQ~~aIp~il~grDvLv~ApTGSGKTlay 433 (633)
+-.....++..+..++++++++++|+|||...
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44455666777778999999999999999754
No 281
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.85 E-value=0.26 Score=50.46 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=30.6
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCC
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
..-++||+||||.|-+ |-...+.+.++...+.+++.+.+-+..
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcchh
Confidence 4567899999999974 456677777777766666666555543
No 282
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.82 E-value=1.2 Score=50.86 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=27.3
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
...+++||||||.|.... .+.+.++++..|..+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 356899999999987543 345666777766666666544
No 283
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.78 E-value=2 Score=49.08 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=25.2
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
....+++||||+|.|... -...+.+.++..+... +++|.+|-...
T Consensus 126 ~~~~KVvIIDEa~~Ls~~-a~naLLk~LEepp~~~-vfI~aTte~~k 170 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKG-AFNALLKTLEEPPPHI-IFIFATTEVQK 170 (507)
T ss_pred cCCcEEEEEEChhhcCHH-HHHHHHHHHhhcCCCE-EEEEEeCChHH
Confidence 456789999999998643 2333444444433333 44444444333
No 284
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.67 E-value=0.74 Score=60.45 Aligned_cols=63 Identities=17% Similarity=0.292 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHHhCC--CcEEEEccCCCCchhhhH--HHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFL--LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~g--rDvLv~ApTGSGKTlayl--LPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi 471 (633)
..+++.|..++..++.+ +-++|++..|+|||.... +-.+..+... .+..++.++||-..+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES---------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---------cCCeEEEEeChHHHHHHH
Confidence 46899999999999876 456788999999997531 1222222221 124688899998877665
No 285
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=91.63 E-value=0.34 Score=57.70 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
..+++-|.+++.+. ...++|.|..|||||.+..-=+ .+++.... ..+-++|+|+-|+..|..+.+.+..++
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ri-a~Li~~~~------i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRI-AHLIAEKN------VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHH-HHHHHcCC------CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 46899999999753 4579999999999998644333 33433211 112358999999999999999988776
Q ss_pred h
Q 006737 480 K 480 (633)
Q Consensus 480 ~ 480 (633)
.
T Consensus 74 ~ 74 (726)
T TIGR01073 74 G 74 (726)
T ss_pred c
Confidence 4
No 286
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.62 E-value=1.4 Score=53.15 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=28.6
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
...+++||||||.|... -.+.+.++++.-+..+.+|+. .|-+..
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa-TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA-TTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE-CCCchh
Confidence 35789999999999633 345556666665656655554 454444
No 287
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.60 E-value=0.87 Score=48.65 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=26.8
Q ss_pred cCCeeEEEEecccccC--CcChHHHHHHHHHH-CCCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLL--DLGFRKDVENIVDC-LPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Ll--d~gf~~~l~~Il~~-lpk~~Q~IlfSATl~~el 579 (633)
+.++++|||||+..-. +|.....+..|++. +.....+|+.|---..++
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el 265 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDEL 265 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHH
Confidence 4578899999997543 33222334455553 234555666554444443
No 288
>PLN03025 replication factor C subunit; Provisional
Probab=91.58 E-value=1.4 Score=46.93 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=26.7
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCC
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
..++|||||||.|... -...+..+++..+....+|+ +++..
T Consensus 99 ~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il-~~n~~ 139 (319)
T PLN03025 99 RHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFAL-ACNTS 139 (319)
T ss_pred CeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEE-EeCCc
Confidence 4678999999998743 34556666666665555544 44433
No 289
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.44 E-value=2.3 Score=48.60 Aligned_cols=98 Identities=21% Similarity=0.212 Sum_probs=73.3
Q ss_pred CCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchH---HHH
Q 006737 425 TGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQR 501 (633)
Q Consensus 425 TGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~---~~~ 501 (633)
.++|++..-++.+.+.+.... .|-+||.+-+.+-|.|++.++. .+.++++.+++|...... ...
T Consensus 366 vF~gse~~K~lA~rq~v~~g~---------~PP~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGF---------KPPVLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred eeeecchhHHHHHHHHHhccC---------CCCeEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHH
Confidence 477888777777666654431 1348999999999999988876 245899999999865443 345
Q ss_pred HHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccc
Q 006737 502 RLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (633)
Q Consensus 502 ~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD 544 (633)
.+..+...|+||| ++|.++ +++.++.+||.+..-
T Consensus 433 ~FR~g~IwvLicT-----dll~RG----iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 433 RFRIGKIWVLICT-----DLLARG----IDFKGVNLVINYDFP 466 (593)
T ss_pred HHhccCeeEEEeh-----hhhhcc----ccccCcceEEecCCC
Confidence 6667788999999 566665 789999999997654
No 290
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.38 E-value=0.45 Score=59.98 Aligned_cols=126 Identities=16% Similarity=0.164 Sum_probs=76.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
++|+-|.++|. ..+++++|.|..|||||.+.+--++..+... . ..-++|+|+=|+..|.++.+++...+.
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~-------~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-V-------DIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-C-------CHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 36899999997 3688999999999999987655555555432 1 112489999999999999888877654
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccc
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~ 545 (633)
....-.. .......+...+ ...-|+|-..+...+-+.....+.+ +-.+=|.||...
T Consensus 71 ~~~~~~p----~~~~L~~q~~~~----~~~~i~Tihsf~~~~~~~~~~~l~l-dP~F~i~de~e~ 126 (1232)
T TIGR02785 71 KALQQEP----NSKHLRRQLALL----NTANISTLHSFCLKVIRKHYYLLDL-DPSFRILTDTEQ 126 (1232)
T ss_pred HHHhcCc----hhHHHHHHHhhc----cCCeEeeHHHHHHHHHHHhhhhcCC-CCCceeCCHHHH
Confidence 2110000 001111111111 2566888888865443332222222 113456887775
No 291
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.26 E-value=2.2 Score=41.11 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=30.5
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccC
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl 575 (633)
-...+++|||+||.|... -.+.+.++++.-|.+..+|++|...
T Consensus 100 ~~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 100 EGKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp TSSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred cCCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 356889999999998743 5677778888877777666655443
No 292
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.20 E-value=0.32 Score=52.44 Aligned_cols=62 Identities=24% Similarity=0.232 Sum_probs=44.7
Q ss_pred CCCCCcHHHHHHHHHHhCCC-cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH
Q 006737 398 GYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (633)
Q Consensus 398 g~~~pt~iQ~~aIp~il~gr-DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi 471 (633)
.|..+++-|...+-.+..++ |+|+++.||||||. +|-++ ...-.. .=++|.+--|.||..+.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lLNal---~~~i~~-------~eRvItiEDtaELql~~ 216 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LLNAL---SGFIDS-------DERVITIEDTAELQLAH 216 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HHHHH---HhcCCC-------cccEEEEeehhhhccCC
Confidence 46789999999999888877 99999999999997 33333 221111 11588888888876553
No 293
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.13 E-value=1.1 Score=52.22 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=26.7
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
...+++||||+|.|.... .+.+.++++..|....+|+ .+|-+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a-~NaLLKtLEEPP~~~~fIL-~Ttd~~k 166 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA-FNAMLKTLEEPPEYLKFVL-ATTDPQK 166 (618)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHhcccCCCCeEEEE-EECCchh
Confidence 467899999999987543 3334455555444454544 4455444
No 294
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.12 E-value=2.4 Score=50.67 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCchhhhHH
Q 006737 416 GKDAVVKAKTGTGKSIAFLL 435 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylL 435 (633)
++-+.+++|||+|||.+...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 44578999999999986543
No 295
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.10 E-value=0.65 Score=57.96 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=61.6
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
+++|++|+++-+..+++.+.+++ +++.+.+++|+.+..... ..+..+..+||||| +.+..+ +++.
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~---p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIierG----IDIP 878 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TIIETG----IDIP 878 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhC---CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chhhcc----cccc
Confidence 69999999999988888887764 367899999998765432 44566789999999 344544 7889
Q ss_pred CeeEEEEeccccc
Q 006737 534 GLKMLVLDEADHL 546 (633)
Q Consensus 534 ~l~~LVIDEAD~L 546 (633)
++.+|||+.||++
T Consensus 879 ~v~~VIi~~ad~f 891 (1147)
T PRK10689 879 TANTIIIERADHF 891 (1147)
T ss_pred cCCEEEEecCCCC
Confidence 9999999999874
No 296
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.10 E-value=0.83 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=17.5
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHH
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAV 441 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l 441 (633)
.+++++||+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 58999999999999753 2334444
No 297
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.04 E-value=1.9 Score=47.09 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=24.6
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
...+++||||||.|....+ +.+.+.++..+....+|+.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4567999999999875322 33455555555555555543
No 298
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.02 E-value=3.5 Score=47.88 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=28.9
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
....+++||||+|.|... -.+.+.++++..+....+|+ .+|-+..
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl-~t~~~~k 161 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIF-ATTEPHK 161 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEE-EeCChhh
Confidence 456789999999988743 34556666666555554544 4454444
No 299
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.02 E-value=0.3 Score=54.72 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=37.7
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
.++++.||||||||..|++|.+- .... -+||+-|--||........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll---~~~~----------s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL---NYPG----------SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH---hccC----------CEEEEECCCcHHHHHHHHHHHC
Confidence 47999999999999999999762 2211 1789999999988776655554
No 300
>PF05729 NACHT: NACHT domain
Probab=90.68 E-value=1.7 Score=40.37 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=27.1
Q ss_pred EEEEecccccCCcC-------hHHHHHHHHHH-CCCCCcEEEEeccCCh
Q 006737 537 MLVLDEADHLLDLG-------FRKDVENIVDC-LPRRRQSLLFSATMPK 577 (633)
Q Consensus 537 ~LVIDEAD~Lld~g-------f~~~l~~Il~~-lpk~~Q~IlfSATl~~ 577 (633)
+||||-+|.+.... +...+..++.. ++++.++++.|.+-+.
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 49999999988632 33445555554 5567777777766544
No 301
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.68 E-value=1.9 Score=43.39 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.|..+++.+++|+|||...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred CCeEEEEECCCCCChHHHH
Confidence 4678999999999999743
No 302
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.55 E-value=2.2 Score=46.10 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHhCCC----cEEEEccCCCCchhhh
Q 006737 402 MTRVQEATLSACLEGK----DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 402 pt~iQ~~aIp~il~gr----DvLv~ApTGSGKTlay 433 (633)
++|+|...+..+.... -++++||.|.|||...
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A 39 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA 39 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH
Confidence 4688888888877542 5889999999999753
No 303
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.52 E-value=1.3 Score=48.71 Aligned_cols=52 Identities=27% Similarity=0.258 Sum_probs=30.8
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
.|.-+++.+++|+|||...+ -+...+.... -+++|+.-. +...|+...+..+
T Consensus 81 ~GslvLI~G~pG~GKStLll-q~a~~~a~~g----------~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLL-QVAARLAKRG----------GKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHH-HHHHHHHhcC----------CeEEEEECC-cCHHHHHHHHHHc
Confidence 45678999999999997433 2223332221 247777643 4456665555444
No 304
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.50 E-value=0.87 Score=48.47 Aligned_cols=68 Identities=32% Similarity=0.411 Sum_probs=40.6
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHH
Q 006737 390 TIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (633)
Q Consensus 390 Ll~~L~~~g~~~pt~iQ~~aIp~-il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa 468 (633)
-+..|.+.|. +++.|...+.. +..+++++++|+||||||... -.++..+.... +.-+++++--+.|+.
T Consensus 107 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~--------~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 107 TLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKND--------PTDRVVIIEDTRELQ 175 (299)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccC--------CCceEEEECCchhhc
Confidence 3445555553 55556666555 445679999999999999742 22333332211 113577777777764
No 305
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.49 E-value=1.2 Score=49.49 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=35.0
Q ss_pred CeeEEEEecccccCCc-ChHHHHHHHHHHCCC-CCcEEEEeccCChhhh
Q 006737 534 GLKMLVLDEADHLLDL-GFRKDVENIVDCLPR-RRQSLLFSATMPKELV 580 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~-gf~~~l~~Il~~lpk-~~Q~IlfSATl~~el~ 580 (633)
++++|+||.++.+... .....+..+++.+.. ..|+|+.|...|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 7889999999998765 356777777776654 3477777777777753
No 306
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=90.46 E-value=0.76 Score=56.15 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=62.6
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
-+++|++|+++-+..+++.++++. +++++..++|+....... ..+..+..+|||||. .+..+ +++
T Consensus 661 ~qv~if~n~i~~~e~l~~~L~~~~---p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie~G----IDI 728 (926)
T TIGR00580 661 GQVFYVHNRIESIEKLATQLRELV---PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIETG----IDI 728 (926)
T ss_pred CeEEEEECCcHHHHHHHHHHHHhC---CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcc----ccc
Confidence 369999999999998888887764 478899999998755433 355667899999994 45554 788
Q ss_pred CCeeEEEEeccccc
Q 006737 533 MGLKMLVLDEADHL 546 (633)
Q Consensus 533 s~l~~LVIDEAD~L 546 (633)
.++.+||++.++..
T Consensus 729 p~v~~VIi~~a~~~ 742 (926)
T TIGR00580 729 PNANTIIIERADKF 742 (926)
T ss_pred ccCCEEEEecCCCC
Confidence 89999999999874
No 307
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.39 E-value=1.6 Score=44.22 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=29.6
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
.|.-+++.+++|+|||...+--+...+ ... -+++|+.= .+-..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~-~~g----------~~~~y~~~-e~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL-KQG----------KKVYVITT-ENTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH-hCC----------CEEEEEEc-CCCHHHHHHHHHHC
Confidence 356789999999999974333223222 211 13656553 34445555555554
No 308
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.34 E-value=5.6 Score=45.75 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=33.0
Q ss_pred cCccccCCCHHHHHHHHHcCC--CCCcHHHHHHHHH------------HhCCCcEEEEccCCCCchhhh
Q 006737 379 KRFDECGISPLTIKALTAAGY--IQMTRVQEATLSA------------CLEGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~--~~pt~iQ~~aIp~------------il~grDvLv~ApTGSGKTlay 433 (633)
..+..+|+++.+.+.|...-- .........++.. +..|+.++++||||+|||...
T Consensus 299 ~~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 299 ELMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred HHHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHH
Confidence 345677888888888865311 1111112222211 234678889999999999854
No 309
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=90.30 E-value=1.1 Score=49.32 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.++-+.++||||.|||..-
T Consensus 202 ~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred cCcEEEEECCCCCcHHHHH
Confidence 3788999999999999853
No 310
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=90.29 E-value=0.23 Score=54.40 Aligned_cols=48 Identities=27% Similarity=0.332 Sum_probs=36.3
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
+++++|+||||||.++++|.+-. .. -.+||+-|--|+........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~~----------~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---WP----------GSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---CC----------CCEEEEccchhHHHHHHHHHHHc
Confidence 47899999999999999987632 11 13889999999998766555443
No 311
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.17 E-value=1.4 Score=50.41 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=14.2
Q ss_pred cEEEEccCCCCchhhhH
Q 006737 418 DAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 418 DvLv~ApTGSGKTlayl 434 (633)
-+|++||.|+|||.+..
T Consensus 38 a~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 38 AYLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35999999999998643
No 312
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.14 E-value=1.6 Score=44.20 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=15.8
Q ss_pred hCCCcEEEEccCCCCchhh
Q 006737 414 LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTla 432 (633)
..|.-+++.|++|+|||..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~ 29 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAF 29 (242)
T ss_pred CCCeEEEEEeCCCCCHHHH
Confidence 4567789999999999964
No 313
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.08 E-value=2.8 Score=44.17 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=55.4
Q ss_pred EEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH-HH---HHHHHHhcCCCceEEEEECCcc
Q 006737 420 VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI-AA---EAIALLKNHDGIGVLTLVGGTR 495 (633)
Q Consensus 420 Lv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi-~~---~l~~l~~~~~~i~v~~l~Gg~~ 495 (633)
++.++.|+|||.+.++.++..+..... ...++++ ||...+..+ .. .+..+......+........ .
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~--------~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP--------GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR-K 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS----------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS-E
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC--------CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC-c
Confidence 567899999999877777766654432 1245454 666555543 32 22222222111111100010 0
Q ss_pred chHHHHHHhcCCCcEEEECchh--hHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEec
Q 006737 496 FKVDQRRLESDPCQILVATPGR--LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (633)
Q Consensus 496 ~~~~~~~l~~~~~dILIaTPgr--Ll~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSA 573 (633)
. .+ .+++.|.+.+-.. -..-+. =..+.+|||||+-.+.+..+...+...+.... ....+++|-
T Consensus 71 ~-----~~-~nG~~i~~~~~~~~~~~~~~~--------G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~ 135 (384)
T PF03237_consen 71 I-----IL-PNGSRIQFRGADSPDSGDNIR--------GFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYIST 135 (384)
T ss_dssp E-----EE-TTS-EEEEES-----SHHHHH--------TS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE
T ss_pred E-----Ee-cCceEEEEecccccccccccc--------ccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeec
Confidence 0 01 2344565555221 111111 13677899999988876544444444433332 222225555
Q ss_pred cCC
Q 006737 574 TMP 576 (633)
Q Consensus 574 Tl~ 576 (633)
|..
T Consensus 136 p~~ 138 (384)
T PF03237_consen 136 PPN 138 (384)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 314
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.06 E-value=4.7 Score=46.74 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=26.2
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
....+++||||+|.|.... ...+.++++..|... +++|.+|-+..
T Consensus 117 ~~~~kViIIDE~~~Lt~~a-~naLLKtLEepp~~~-ifIlatt~~~k 161 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGA-FNALLKTLEEPPAHV-IFILATTEPHK 161 (559)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHhcCCCCCe-EEEEEeCChhh
Confidence 4567899999999987532 334444455444343 44444554443
No 315
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=89.94 E-value=0.44 Score=57.21 Aligned_cols=66 Identities=11% Similarity=0.018 Sum_probs=54.7
Q ss_pred cEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 509 QILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 509 dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
.|+++||..|..-|-.+ .+.+..|..|||||||++.+..-...+.++...-++..=+.+|||....
T Consensus 9 gi~~~T~rIl~~DlL~~---ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 9 GIFSITSRILVVDLLTG---IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred CEEEEechhhHhHHhcC---CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 79999999986544444 3789999999999999998777777888888887777889999998764
No 316
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.92 E-value=1 Score=51.03 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=66.6
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCc
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~ 494 (633)
.|.-+++.+++|+|||+..+- .+....+.. -+++|++ +-|-..|+...+..+.-..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~-f~~~~~~~g----------e~~~y~s-~eEs~~~i~~~~~~lg~~~------------ 317 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSK-FLENACANK----------ERAILFA-YEESRAQLLRNAYSWGIDF------------ 317 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHH-HHHHHHHCC----------CeEEEEE-eeCCHHHHHHHHHHcCCCh------------
Confidence 456899999999999974332 222222221 2477765 7788888888887663110
Q ss_pred cchHHHHHHhcCCCcEEEE-----CchhhHHHHhcccCcccccCCeeEEEEecccccCC----cChHHHHHHHHHHCCCC
Q 006737 495 RFKVDQRRLESDPCQILVA-----TPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD----LGFRKDVENIVDCLPRR 565 (633)
Q Consensus 495 ~~~~~~~~l~~~~~dILIa-----TPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld----~gf~~~l~~Il~~lpk~ 565 (633)
. .....+...|+-. .|+.++..+... +.-.+.+.||||=.-.+.. ......+..+...+...
T Consensus 318 --~---~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~----i~~~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~ 388 (484)
T TIGR02655 318 --E---EMEQQGLLKIICAYPESAGLEDHLQIIKSE----IADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQE 388 (484)
T ss_pred --H---HHhhCCcEEEEEcccccCChHHHHHHHHHH----HHHcCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhC
Confidence 1 1111111222221 234444444322 2223567899998876532 11333444555665544
Q ss_pred CcEEEEecc
Q 006737 566 RQSLLFSAT 574 (633)
Q Consensus 566 ~Q~IlfSAT 574 (633)
--+++|+..
T Consensus 389 ~it~~~t~~ 397 (484)
T TIGR02655 389 EITGFFTNT 397 (484)
T ss_pred CCeEEEeec
Confidence 344444433
No 317
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=89.90 E-value=2.4 Score=48.36 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=85.5
Q ss_pred CCcHHHHHHHHHHhC----------CCcEEEEccCCCCchhhhH-HHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHH
Q 006737 401 QMTRVQEATLSACLE----------GKDAVVKAKTGTGKSIAFL-LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~----------grDvLv~ApTGSGKTlayl-LPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~ 469 (633)
.+-|+|.-++-.|+. -+..+|..|-+-|||.... |.....+..... +-...|++|+.+-+.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~--------~~~~~i~A~s~~qa~ 132 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRS--------GAGIYILAPSVEQAA 132 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhc--------CCcEEEEeccHHHHH
Confidence 567899998888873 1468899999999996433 222222333211 124889999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCc
Q 006737 470 QIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (633)
Q Consensus 470 Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~ 549 (633)
+.+..++.+....+.+.. ..........|.+.--...+..+..... ..+-.+..+.||||.|...+.
T Consensus 133 ~~F~~ar~mv~~~~~l~~------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~-~~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 133 NSFNPARDMVKRDDDLRD------------LCNVQTHSRTITHRKTDSTIKAVAADPN-TVDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred HhhHHHHHHHHhCcchhh------------hhccccceeEEEecccceeeeeeccCCC-cccCCCcceEEEehhhhhcCH
Confidence 999999888764431111 1111111112333222233333333321 123335568999999998765
Q ss_pred ChHHHHHHHHHHC--CCCCcEEEEec
Q 006737 550 GFRKDVENIVDCL--PRRRQSLLFSA 573 (633)
Q Consensus 550 gf~~~l~~Il~~l--pk~~Q~IlfSA 573 (633)
+ ..+..+..-+ .++.+++..|-
T Consensus 200 ~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 200 E--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred H--HHHHHHHhhhccCcCceEEEEec
Confidence 2 4444444433 23555665553
No 318
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=89.87 E-value=2.6 Score=44.39 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
++.+++++|||+|||...
T Consensus 194 ~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999754
No 319
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.74 E-value=0.89 Score=47.77 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=29.5
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
....++|||||||.|.. +-...+..+++.-+.+..+|+.+- -+..
T Consensus 107 ~~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~n-~~~~ 151 (325)
T COG0470 107 EGGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILITN-DPSK 151 (325)
T ss_pred CCCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEcC-Chhh
Confidence 35788999999999875 345566666666555565555443 4443
No 320
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.56 E-value=1.6 Score=49.44 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=24.2
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
..+++||||||.|... ..+.+..+++.-+... ++++.+|-+..
T Consensus 121 ~~KV~IIDEah~Ls~~-A~NALLKtLEEPp~~v-iFILaTte~~k 163 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQ-SFNALLKTLEEPPAHI-VFILATTEFHK 163 (484)
T ss_pred CCEEEEEechhhcCHH-HHHHHHHHhhcCCCce-EEEeecCChhh
Confidence 5679999999998753 3344444444433222 33344454433
No 321
>PRK04328 hypothetical protein; Provisional
Probab=89.50 E-value=2.2 Score=44.00 Aligned_cols=53 Identities=17% Similarity=0.057 Sum_probs=32.1
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
.|..+++.+++|+|||...+--+.+.+... -.++|++ +.+-..++.+.+..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~g-----------e~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG-----------EPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC-----------CcEEEEE-eeCCHHHHHHHHHHcC
Confidence 467889999999999864322233333221 1366665 5566666666666553
No 322
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.41 E-value=3.4 Score=46.18 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=25.1
Q ss_pred CeeEEEEecccccC-CcChHHHHHHHHHHCC---CCCcEEEEeccCChh
Q 006737 534 GLKMLVLDEADHLL-DLGFRKDVENIVDCLP---RRRQSLLFSATMPKE 578 (633)
Q Consensus 534 ~l~~LVIDEAD~Ll-d~gf~~~l~~Il~~lp---k~~Q~IlfSATl~~e 578 (633)
..++||||=+-+.. +......+..++.... +.--++++|||....
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~ 347 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH 347 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH
Confidence 56678888665542 2223344444444432 223467778888774
No 323
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.39 E-value=0.8 Score=45.10 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=24.8
Q ss_pred eEEEEecccccC-C----cChHHHHHHHHHHCCC-CCcEEEEeccC
Q 006737 536 KMLVLDEADHLL-D----LGFRKDVENIVDCLPR-RRQSLLFSATM 575 (633)
Q Consensus 536 ~~LVIDEAD~Ll-d----~gf~~~l~~Il~~lpk-~~Q~IlfSATl 575 (633)
-+|||||+|.+. . ..+...+..++..+.. ....++++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 589999999998 2 2366677777766332 33445555554
No 324
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.35 E-value=2 Score=49.77 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=56.4
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
.++||.|+|+..|.++++.+... ++.+..++|+....... ..+..+..+||||| +.+..+ +++
T Consensus 258 ~k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~arG----IDi 323 (572)
T PRK04537 258 ARTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAARG----LHI 323 (572)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhcC----CCc
Confidence 35999999999999998877654 67899999987765433 45556778999999 345544 778
Q ss_pred CCeeEEEEecc
Q 006737 533 MGLKMLVLDEA 543 (633)
Q Consensus 533 s~l~~LVIDEA 543 (633)
.++++||.-+.
T Consensus 324 p~V~~VInyd~ 334 (572)
T PRK04537 324 DGVKYVYNYDL 334 (572)
T ss_pred cCCCEEEEcCC
Confidence 88988886544
No 325
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.22 E-value=2.2 Score=48.45 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCCchhhhHH
Q 006737 416 GKDAVVKAKTGTGKSIAFLL 435 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylL 435 (633)
|+-++++||||+|||.+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CcEEEEECCCCccHHHHHHH
Confidence 55688999999999986443
No 326
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=89.20 E-value=2.4 Score=47.08 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=18.3
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHH
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEA 440 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~ 440 (633)
..|.=+++.|+||+|||.. ++-+..+
T Consensus 192 ~~g~liviag~pg~GKT~~-al~ia~~ 217 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTL-ALNIAEN 217 (421)
T ss_pred CCCceEEEEeCCCCCHHHH-HHHHHHH
Confidence 3566788899999999964 4444433
No 327
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=89.11 E-value=1.2 Score=45.89 Aligned_cols=141 Identities=18% Similarity=0.169 Sum_probs=67.7
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCcc
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~ 495 (633)
|.=+++.|.||.|||.. ++-+..++..... ..|+|++.- .-..++..++..... ++....+..+.-
T Consensus 19 g~L~vi~a~pg~GKT~~-~l~ia~~~a~~~~---------~~vly~SlE-m~~~~l~~R~la~~s---~v~~~~i~~g~l 84 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAF-ALQIALNAALNGG---------YPVLYFSLE-MSEEELAARLLARLS---GVPYNKIRSGDL 84 (259)
T ss_dssp T-EEEEEESTTSSHHHH-HHHHHHHHHHTTS---------SEEEEEESS-S-HHHHHHHHHHHHH---TSTHHHHHCCGC
T ss_pred CcEEEEEecccCCchHH-HHHHHHHHHHhcC---------CeEEEEcCC-CCHHHHHHHHHHHhh---cchhhhhhcccc
Confidence 44578889999999964 4455555444321 247777642 222333333333322 221111111111
Q ss_pred chHHH-------HHHhcCCCcEE-EECch----hhHHHHhcccCcccccCCeeEEEEecccccCCc----ChHHHHHHHH
Q 006737 496 FKVDQ-------RRLESDPCQIL-VATPG----RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL----GFRKDVENIV 559 (633)
Q Consensus 496 ~~~~~-------~~l~~~~~dIL-IaTPg----rLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~----gf~~~l~~Il 559 (633)
...+. ..+... .+. ..+|. .|...+..- ......+.+||||=+|.|-.. .....+..+.
T Consensus 85 ~~~e~~~~~~~~~~l~~~--~l~i~~~~~~~~~~i~~~i~~~---~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~ 159 (259)
T PF03796_consen 85 SDEEFERLQAAAEKLSDL--PLYIEDTPSLTIDDIESKIRRL---KREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEIS 159 (259)
T ss_dssp HHHHHHHHHHHHHHHHTS--EEEEEESSS-BHHHHHHHHHHH---HHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhC--cEEEECCCCCCHHHHHHHHHHH---HhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHH
Confidence 11111 122222 344 34443 444444322 122368899999999998753 2344444443
Q ss_pred HHCC-----CCCcEEEEeccC
Q 006737 560 DCLP-----RRRQSLLFSATM 575 (633)
Q Consensus 560 ~~lp-----k~~Q~IlfSATl 575 (633)
..|. .++.+|++|..-
T Consensus 160 ~~Lk~lA~~~~i~vi~~sQln 180 (259)
T PF03796_consen 160 RELKALAKELNIPVIALSQLN 180 (259)
T ss_dssp HHHHHHHHHHTSEEEEEEEBS
T ss_pred HHHHHHHHHcCCeEEEccccC
Confidence 3332 156677766643
No 328
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.07 E-value=2.9 Score=48.28 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=27.4
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
....+++||||||.|... -.+.+.++++..|....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 346689999999998753 3455666666666666566544
No 329
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.01 E-value=2.6 Score=49.19 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=24.9
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
...++|||||||.|... -...+.++++..+ ..-+++|.+|-+..
T Consensus 118 g~~kVIIIDEad~Lt~~-a~naLLk~LEEP~-~~~ifILaTt~~~k 161 (624)
T PRK14959 118 GRYKVFIIDEAHMLTRE-AFNALLKTLEEPP-ARVTFVLATTEPHK 161 (624)
T ss_pred CCceEEEEEChHhCCHH-HHHHHHHHhhccC-CCEEEEEecCChhh
Confidence 45689999999998633 2233344444332 23345555555444
No 330
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.01 E-value=1.1 Score=51.23 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
.+.+|+.+|+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999984
No 331
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=88.85 E-value=1.3 Score=44.44 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=62.9
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCc
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~ 494 (633)
.|.-+++.+++|+|||...+--+.+.+. .. -.++|++ +.+-..++.+.+..+...
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~-~g----------~~~~y~s-~e~~~~~l~~~~~~~~~~------------- 69 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK-NG----------EKAMYIS-LEEREERILGYAKSKGWD------------- 69 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-CC----------CeEEEEE-CCCCHHHHHHHHHHcCCC-------------
Confidence 3567899999999998632222333222 21 1366664 445567776666555211
Q ss_pred cchHHHHHHhcCCCcEEEECchhhHH---HHhcccCcccccCCeeEEEEecccccC----C-cChHHHHHHHHHHCCCCC
Q 006737 495 RFKVDQRRLESDPCQILVATPGRLLD---HIENKSGLSVRLMGLKMLVLDEADHLL----D-LGFRKDVENIVDCLPRRR 566 (633)
Q Consensus 495 ~~~~~~~~l~~~~~dILIaTPgrLl~---lL~~~~~~~~~Ls~l~~LVIDEAD~Ll----d-~gf~~~l~~Il~~lpk~~ 566 (633)
... .+.. ...|+-.+|..+.. .+...-...+.-..++.||||=...+. + ..+...+..++..+....
T Consensus 70 -~~~---~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~ 144 (224)
T TIGR03880 70 -LED---YIDK-SLYIVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETG 144 (224)
T ss_pred -hHH---HHhC-CeEEEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCC
Confidence 010 0111 12222223332211 111000000111246789999877551 1 113455666777666555
Q ss_pred cEEEEeccC
Q 006737 567 QSLLFSATM 575 (633)
Q Consensus 567 Q~IlfSATl 575 (633)
.++++++..
T Consensus 145 ~tvll~s~~ 153 (224)
T TIGR03880 145 VTTILTSEA 153 (224)
T ss_pred CEEEEEEcc
Confidence 566766654
No 332
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=88.77 E-value=2.4 Score=44.01 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.|.-++|.+++|+|||..
T Consensus 35 ~gs~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLM 52 (259)
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 467789999999999974
No 333
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.67 E-value=3.4 Score=46.38 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
..+++++++|+|||.+.
T Consensus 96 ~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTA 112 (437)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46889999999999864
No 334
>CHL00181 cbbX CbbX; Provisional
Probab=88.44 E-value=2 Score=45.41 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006737 416 GKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 416 grDvLv~ApTGSGKTlayl 434 (633)
+.++++.||+|+|||.+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999998644
No 335
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=88.40 E-value=2.9 Score=45.60 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=28.8
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
...++|||||||.|... -.+.+.++++..+....+|++| +-+.
T Consensus 140 g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit-~~~~ 182 (351)
T PRK09112 140 GNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILIS-HSSG 182 (351)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEE-CChh
Confidence 46789999999998643 3455777777755556555554 4343
No 336
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=88.20 E-value=6 Score=43.36 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=31.5
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHC-CCCCcEEEEeccCChhh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCL-PRRRQSLLFSATMPKEL 579 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~l-pk~~Q~IlfSATl~~el 579 (633)
....+|.+||.|.- |.+-.-.+..++..+ ....-+|+.|-+.|+++
T Consensus 126 ~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 35668999999863 444455666676644 44677777788888774
No 337
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=88.19 E-value=0.55 Score=54.67 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=38.5
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
.++++.||||||||..|++|.+-.. .. -+||+-|--|+........+++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~--~~-----------S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW--ED-----------SVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC--CC-----------CEEEEeCcHHHHHHHHHHHHHC
Confidence 4799999999999999999987432 11 2889999999998777555543
No 338
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.19 E-value=2.2 Score=50.97 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=29.9
Q ss_pred ccCccccCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~---g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
..+|++++-....++.+.++ .+..+.-.+... +..++.++++||+|+|||+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 35688886555555555442 111111111111 23457899999999999974
No 339
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.14 E-value=2.1 Score=49.15 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=26.4
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
....+++||||||.|.... .+.+.+.++..|....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 3467899999999987542 344555666655566555544
No 340
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=88.14 E-value=6.7 Score=39.17 Aligned_cols=50 Identities=22% Similarity=0.405 Sum_probs=37.6
Q ss_pred CCeeEEEEecccccCCcCh--HHHHHHHHHHCCCCCcEEEEeccCChhhhcc
Q 006737 533 MGLKMLVLDEADHLLDLGF--RKDVENIVDCLPRRRQSLLFSATMPKELVLK 582 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf--~~~l~~Il~~lpk~~Q~IlfSATl~~el~l~ 582 (633)
...++||+||+-..++.++ ...+..++..-|...-+|+.--..|+++.-.
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ 165 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEA 165 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 4688999999998888874 5678888888777766666666677765433
No 341
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.09 E-value=1.6 Score=49.73 Aligned_cols=86 Identities=17% Similarity=0.279 Sum_probs=60.3
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHH---HhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR---LESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~---l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
.++||.|-|+.-|.++...+... ++.+.+++|+.+..+.... +..+.+.|||||- ...+ .+++
T Consensus 342 ~KvIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd-----VAaR----GLDi 407 (519)
T KOG0331|consen 342 GKVIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD-----VAAR----GLDV 407 (519)
T ss_pred CcEEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc-----cccc----cCCC
Confidence 47999999999999988877765 5778999999887765444 4467899999993 2222 3677
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCC
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLP 563 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp 563 (633)
.+|++||- .+|-..++..++.+.
T Consensus 408 ~dV~lVIn--------ydfP~~vEdYVHRiG 430 (519)
T KOG0331|consen 408 PDVDLVIN--------YDFPNNVEDYVHRIG 430 (519)
T ss_pred ccccEEEe--------CCCCCCHHHHHhhcC
Confidence 77777763 334444554554443
No 342
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.95 E-value=3.8 Score=48.18 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=28.1
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
...+++||||||+|... -...+.++++..+....+|+ .+|-+..
T Consensus 117 gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FIL-aTtd~~k 160 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLF-ATTDPQK 160 (702)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEE-EECChHh
Confidence 45689999999988754 34456666666665554544 4454433
No 343
>PRK06904 replicative DNA helicase; Validated
Probab=87.74 E-value=4.6 Score=45.82 Aligned_cols=142 Identities=18% Similarity=0.212 Sum_probs=67.9
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEE-EC
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL-VG 492 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l-~G 492 (633)
..|.=+++.|.||.|||. |.+-+..++.... +..|+|++ .-.-..|+..++..... ++....+ .|
T Consensus 219 ~~G~LiiIaarPg~GKTa-falnia~~~a~~~---------g~~Vl~fS-lEMs~~ql~~Rlla~~s---~v~~~~i~~g 284 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTT-FAMNLCENAAMAS---------EKPVLVFS-LEMPAEQIMMRMLASLS---RVDQTKIRTG 284 (472)
T ss_pred CCCcEEEEEeCCCCChHH-HHHHHHHHHHHhc---------CCeEEEEe-ccCCHHHHHHHHHHhhC---CCCHHHhccC
Confidence 345556778999999997 4444444443221 11255554 34555666655544432 2222212 22
Q ss_pred CccchHHHH-------HHhcCCCcEEEE-----CchhhHHHHhcccCcccccCCeeEEEEecccccCCcC----hHHHHH
Q 006737 493 GTRFKVDQR-------RLESDPCQILVA-----TPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG----FRKDVE 556 (633)
Q Consensus 493 g~~~~~~~~-------~l~~~~~dILIa-----TPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~g----f~~~l~ 556 (633)
..-...++. .+.. ...+.|- |+..+...+... ......+++||||=.+.|...+ ....+.
T Consensus 285 ~~l~~~e~~~~~~a~~~l~~-~~~l~I~d~~~~t~~~i~~~~r~~---~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~ 360 (472)
T PRK06904 285 QNLDQQDWAKISSTVGMFKQ-KPNLYIDDSSGLTPTELRSRARRV---YRENGGLSLIMVDYLQLMRAPGFEDNRTLEIA 360 (472)
T ss_pred CCCCHHHHHHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHHH---HHhCCCCCEEEEecHHhcCCCCCCCcHHHHHH
Confidence 111111221 2211 2345553 333333322221 0111258899999999885332 233444
Q ss_pred HHHHHC---CC--CCcEEEEec
Q 006737 557 NIVDCL---PR--RRQSLLFSA 573 (633)
Q Consensus 557 ~Il~~l---pk--~~Q~IlfSA 573 (633)
.|...| -+ ++.+|++|-
T Consensus 361 ~isr~LK~lAkel~ipVi~lsQ 382 (472)
T PRK06904 361 EISRSLKALAKELKVPVVALSQ 382 (472)
T ss_pred HHHHHHHHHHHHhCCeEEEEEe
Confidence 443333 22 677888773
No 344
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.69 E-value=4.3 Score=42.53 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=25.3
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
..++|||||+|.+... ....+..+++..+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4578999999998643 3445666666666666555544
No 345
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=87.66 E-value=0.54 Score=53.55 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=29.5
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEE
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~Ilf 571 (633)
+++-+++|+||+-.-+|......+.+.+..+.+++-+|+.
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 6677899999999988887777787777766545434443
No 346
>PRK13342 recombination factor protein RarA; Reviewed
Probab=87.58 E-value=2.2 Score=47.31 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=23.0
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCC
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
.-.+|||||+|++... ....++..+.. ..++++.+|-.
T Consensus 92 ~~~vL~IDEi~~l~~~----~q~~LL~~le~-~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNKA----QQDALLPHVED-GTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCHH----HHHHHHHHhhc-CcEEEEEeCCC
Confidence 3457999999998632 33344444433 45666666543
No 347
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.57 E-value=3.2 Score=48.63 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=24.8
Q ss_pred ccCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 531 RLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 531 ~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
....-++|||||+|.|.... .+.+.+.++..+...-+|+++
T Consensus 124 ~~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred hcCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 34567899999999997532 334444555544444444433
No 348
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=87.53 E-value=1.9 Score=51.47 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=24.6
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
...+|||||+|.+... ....++..+. +.++++++||-.+.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCCh
Confidence 3457999999998632 2223333333 35677878875543
No 349
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=87.47 E-value=4 Score=39.51 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=40.5
Q ss_pred cCCeeEEEEecccccCCcC--hHHHHHHHHHHCCCCCcEEEEeccCChhhhcccc
Q 006737 532 LMGLKMLVLDEADHLLDLG--FRKDVENIVDCLPRRRQSLLFSATMPKELVLKRE 584 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~g--f~~~l~~Il~~lpk~~Q~IlfSATl~~el~l~~~ 584 (633)
....++|||||+=..+..+ -...+..+++..|...-+|+.+-..|+++.-..+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 4578999999999887776 4677888888888777777777777877654433
No 350
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.43 E-value=2.2 Score=48.43 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.2
Q ss_pred cEEEEccCCCCchhhhH
Q 006737 418 DAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 418 DvLv~ApTGSGKTlayl 434 (633)
.+|++||+|+|||.+..
T Consensus 38 ~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 38 AYIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999998543
No 351
>PRK08506 replicative DNA helicase; Provisional
Probab=87.37 E-value=2.7 Score=47.57 Aligned_cols=139 Identities=15% Similarity=0.169 Sum_probs=66.7
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEE-ECC
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL-VGG 493 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l-~Gg 493 (633)
.|.=+++.|.||.|||.. ++-+..++...+ ..|+|++ .-.-+.|+..++..... ++....+ .|.
T Consensus 191 ~G~LivIaarpg~GKT~f-al~ia~~~~~~g----------~~V~~fS-lEMs~~ql~~Rlla~~s---~v~~~~i~~~~ 255 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTL-CLNMALKALNQD----------KGVAFFS-LEMPAEQLMLRMLSAKT---SIPLQNLRTGD 255 (472)
T ss_pred CCceEEEEcCCCCChHHH-HHHHHHHHHhcC----------CcEEEEe-CcCCHHHHHHHHHHHhc---CCCHHHHhcCC
Confidence 455678899999999964 444444443321 1255553 34555666555544322 2222111 122
Q ss_pred ccchHHH-------HHHhcCCCcEEEE-C----chhhHHHHhcccCcccccCCeeEEEEecccccCCcC----hHHHHHH
Q 006737 494 TRFKVDQ-------RRLESDPCQILVA-T----PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG----FRKDVEN 557 (633)
Q Consensus 494 ~~~~~~~-------~~l~~~~~dILIa-T----PgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~g----f~~~l~~ 557 (633)
.. ..++ ..+... .+.|- + +..|...+..- ......+++||||=.+.|...+ ....+..
T Consensus 256 l~-~~e~~~~~~a~~~l~~~--~l~I~d~~~~ti~~I~~~~r~l---~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~ 329 (472)
T PRK08506 256 LD-DDEWERLSDACDELSKK--KLFVYDSGYVNIHQVRAQLRKL---KSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISE 329 (472)
T ss_pred CC-HHHHHHHHHHHHHHHcC--CeEEECCCCCCHHHHHHHHHHH---HHhCCCCCEEEEcChhhccCCCCCCCHHHHHHH
Confidence 11 1111 122222 34443 3 33333333221 1112358899999999875322 2333444
Q ss_pred HHHHC---CC--CCcEEEEecc
Q 006737 558 IVDCL---PR--RRQSLLFSAT 574 (633)
Q Consensus 558 Il~~l---pk--~~Q~IlfSAT 574 (633)
|...| -+ ++.+|++|-.
T Consensus 330 isr~LK~lAkel~ipVi~lsQL 351 (472)
T PRK08506 330 ISRGLKLLARELDIPIIALSQL 351 (472)
T ss_pred HHHHHHHHHHHhCCcEEEEeec
Confidence 43332 22 6778887743
No 352
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.28 E-value=1.3 Score=52.64 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=39.9
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
+--+||||.-|.+.+...-..+..+++..|.+.+.|+.|=+-|.-
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l 173 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQL 173 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCC
Confidence 445899999999999888999999999999999999988887764
No 353
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.23 E-value=6.7 Score=46.07 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=23.8
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEecc
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
....++|||||||.|... -...+.+.++.-+....+ +|.++
T Consensus 119 ~~~~KViIIDEad~Lt~~-a~naLLK~LEePp~~tvf-IL~t~ 159 (620)
T PRK14948 119 QARWKVYVIDECHMLSTA-AFNALLKTLEEPPPRVVF-VLATT 159 (620)
T ss_pred cCCceEEEEECccccCHH-HHHHHHHHHhcCCcCeEE-EEEeC
Confidence 346689999999998643 234445555544434333 33344
No 354
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=87.21 E-value=6.7 Score=45.56 Aligned_cols=137 Identities=17% Similarity=0.204 Sum_probs=85.0
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhc-CCCceEEEEEC
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN-HDGIGVLTLVG 492 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~-~~~i~v~~l~G 492 (633)
+..+-.++--|--.|||+ |+.|++..++..- .++++.|++.-+..++-+++++...+.. ++.-.+...
T Consensus 200 FKQkaTVFLVPRRHGKTW-f~VpiIsllL~s~--------~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~-- 268 (668)
T PHA03372 200 FKQKATVFLVPRRHGKTW-FIIPIISFLLKNI--------IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN-- 268 (668)
T ss_pred hhccceEEEecccCCcee-hHHHHHHHHHHhh--------cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee--
Confidence 445667777899999997 6888888887742 3578999999999888888777655432 221111111
Q ss_pred CccchHHHHHHhcCCCcEEEECchhhHHH--HhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCC-CCCcEE
Q 006737 493 GTRFKVDQRRLESDPCQILVATPGRLLDH--IENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSL 569 (633)
Q Consensus 493 g~~~~~~~~~l~~~~~dILIaTPgrLl~l--L~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp-k~~Q~I 569 (633)
. +-.|.+.-|+.=... +.....-.+.=.+..+|+|||||-+-. ..+..|+-.+. +++.+|
T Consensus 269 ------------k-~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~KiI 331 (668)
T PHA03372 269 ------------K-DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTTKII 331 (668)
T ss_pred ------------c-CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCceEE
Confidence 1 114555544332100 110000013344678999999998763 36666776554 578999
Q ss_pred EEeccCChh
Q 006737 570 LFSATMPKE 578 (633)
Q Consensus 570 lfSATl~~e 578 (633)
..|.|.+..
T Consensus 332 fISS~Nsg~ 340 (668)
T PHA03372 332 FISSTNTTN 340 (668)
T ss_pred EEeCCCCCC
Confidence 999997544
No 355
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.21 E-value=3.5 Score=46.09 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCCchhhhH
Q 006737 415 EGKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlayl 434 (633)
.|.-+.++||||+|||....
T Consensus 190 ~g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35568899999999998543
No 356
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=87.16 E-value=0.7 Score=53.62 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=34.8
Q ss_pred CCcHHHHHHHHH----HhCCCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 401 QMTRVQEATLSA----CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 401 ~pt~iQ~~aIp~----il~grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
+|+.||...+.. |-.|+--|+.+|||+|||+..+..+|..|..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 688999877655 4468988999999999999988877776653
No 357
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=87.13 E-value=7 Score=42.16 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=29.8
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
....+++|||++|.|.. .....+.++++..+.... ++++++-+.
T Consensus 111 ~~~~kV~iiEp~~~Ld~-~a~naLLk~LEep~~~~~-~Ilvth~~~ 154 (325)
T PRK08699 111 RGGLRVILIHPAESMNL-QAANSLLKVLEEPPPQVV-FLLVSHAAD 154 (325)
T ss_pred cCCceEEEEechhhCCH-HHHHHHHHHHHhCcCCCE-EEEEeCChH
Confidence 45678999999999864 466777778877765544 444444433
No 358
>PRK09087 hypothetical protein; Validated
Probab=87.10 E-value=1.8 Score=44.10 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=24.6
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEecc-CChh
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT-MPKE 578 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT-l~~e 578 (633)
+|+||++|.+. .-...+..+++.+......++++++ -|+.
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 69999999873 2345677777766543334555554 4444
No 359
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=87.05 E-value=3.9 Score=44.12 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=28.0
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
....+++|||+||.|... -.+.+.++++.-|.+.-+|+.|
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEE
Confidence 456789999999999743 4566667777656566555544
No 360
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=87.04 E-value=3 Score=46.40 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=66.2
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEE-EC
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL-VG 492 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l-~G 492 (633)
..|.=+++.|+||+|||. |++-++.++.... +..+++++ .-.-..|+..++..... ++....+ .|
T Consensus 193 ~~G~l~vi~g~pg~GKT~-~~l~~a~~~a~~~---------g~~vl~~S-lEm~~~~i~~R~~~~~~---~v~~~~~~~g 258 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTA-FALNIAENAAIKE---------GKPVAFFS-LEMSAEQLAMRMLSSES---RVDSQKLRTG 258 (434)
T ss_pred CCCeEEEEEeCCCCChHH-HHHHHHHHHHHhC---------CCeEEEEe-CcCCHHHHHHHHHHHhc---CCCHHHhccC
Confidence 346667889999999996 4444444433211 11255553 34445555555544432 2221111 12
Q ss_pred CccchHHH-------HHHhcCCCcEEE-ECc----hhhHHHHhcccCcccccCCeeEEEEecccccCCcC----hHHHHH
Q 006737 493 GTRFKVDQ-------RRLESDPCQILV-ATP----GRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG----FRKDVE 556 (633)
Q Consensus 493 g~~~~~~~-------~~l~~~~~dILI-aTP----grLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~g----f~~~l~ 556 (633)
.... .+. ..+.. ..+.| .+| ..|...+..- ..-..+++||||=.+.|...+ ....+.
T Consensus 259 ~l~~-~~~~~~~~a~~~l~~--~~l~i~d~~~~~~~~i~~~i~~~----~~~~~~~~vvID~l~~i~~~~~~~~r~~~i~ 331 (434)
T TIGR00665 259 KLSD-EDWEKLTSAAGKLSE--APLYIDDTPGLTITELRAKARRL----KREHGLGLIVIDYLQLMSGSGRSENRQQEVS 331 (434)
T ss_pred CCCH-HHHHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHH----HHhcCCCEEEEcchHhcCCCCCCCCHHHHHH
Confidence 2111 111 12222 23444 333 3343333221 111358899999998875321 223344
Q ss_pred HHHHHCC-----CCCcEEEEec
Q 006737 557 NIVDCLP-----RRRQSLLFSA 573 (633)
Q Consensus 557 ~Il~~lp-----k~~Q~IlfSA 573 (633)
.|...|. .++.+|++|-
T Consensus 332 ~i~~~Lk~lA~e~~i~vi~lsq 353 (434)
T TIGR00665 332 EISRSLKALAKELNVPVIALSQ 353 (434)
T ss_pred HHHHHHHHHHHHhCCeEEEEec
Confidence 4444332 2577777774
No 361
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.04 E-value=1.6 Score=50.70 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=24.4
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEecc
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
+...++|||||+|.|... -.+.+.++++..+... +++|.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~~-a~naLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHH-HHHHHHHHHhcCCCCe-EEEEEeC
Confidence 456789999999998753 2334444455544343 4444444
No 362
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.91 E-value=4.6 Score=44.62 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=24.5
Q ss_pred ccCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEecc
Q 006737 531 RLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 531 ~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
.....++|||||||.|.... ...+...++..+... +++|.++
T Consensus 124 ~~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t-~~Il~t~ 165 (397)
T PRK14955 124 QKGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHA-IFIFATT 165 (397)
T ss_pred hcCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCe-EEEEEeC
Confidence 35677899999999997532 233444444444444 3344444
No 363
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=86.89 E-value=1.6 Score=43.28 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCCchhhhH
Q 006737 415 EGKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlayl 434 (633)
.|.-+.+.+++|+|||...+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~ 30 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICM 30 (209)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678999999999997543
No 364
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=86.86 E-value=5.7 Score=41.68 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006737 416 GKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 416 grDvLv~ApTGSGKTlayl 434 (633)
.+-+++++++|+|||....
T Consensus 72 ~~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIA 90 (272)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3467788999999998543
No 365
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=86.85 E-value=3.1 Score=47.61 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=52.1
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.+.|+..|..+...+... ++++..++|+....... ..++.+..+|+|||- ...++ +++.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~-----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD-----vaaRG----iDi~ 340 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR-----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATD-----VAARG----LDIP 340 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC-----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec-----hhhcc----CCcc
Confidence 5999999999999987766655 78999999998866543 455667899999994 22333 5666
Q ss_pred CeeEEE
Q 006737 534 GLKMLV 539 (633)
Q Consensus 534 ~l~~LV 539 (633)
++.+||
T Consensus 341 ~v~~Vi 346 (513)
T COG0513 341 DVSHVI 346 (513)
T ss_pred ccceeE
Confidence 666664
No 366
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=86.85 E-value=2.9 Score=46.40 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=53.5
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.+++++-|..++..+... ++.+..++|+....... ..+..+..+|||||- .+..+ +++.
T Consensus 247 ~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~~G----iDip 312 (434)
T PRK11192 247 RSIVFVRTRERVHELAGWLRKA-----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAARG----IDID 312 (434)
T ss_pred eEEEEeCChHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccccC----ccCC
Confidence 6999999999999988887653 78889999987765443 455667889999993 33333 6778
Q ss_pred CeeEEEE
Q 006737 534 GLKMLVL 540 (633)
Q Consensus 534 ~l~~LVI 540 (633)
++.+||.
T Consensus 313 ~v~~VI~ 319 (434)
T PRK11192 313 DVSHVIN 319 (434)
T ss_pred CCCEEEE
Confidence 8888774
No 367
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=86.82 E-value=3 Score=46.19 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=28.7
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
....+++||||||.|... ..+.+.++++.-+... ++++.||-+..
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~-~fIL~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRT-VWLLCAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCC-eEEEEECChHH
Confidence 346789999999999754 3455666666544454 45555555544
No 368
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.81 E-value=1.4 Score=45.62 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=27.2
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa 468 (633)
+..+.+++++|+||||||... -.++..+... .-+++++--+.|+-
T Consensus 124 v~~~~~ili~G~tGSGKTT~l-~all~~i~~~----------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLL-NALLEEIPPE----------DERIVTIEDPPELR 168 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT----------TSEEEEEESSS-S-
T ss_pred cccceEEEEECCCccccchHH-HHHhhhcccc----------ccceEEecccccee
Confidence 345779999999999999843 3334433222 12466666665553
No 369
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=86.72 E-value=0.76 Score=49.93 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=28.6
Q ss_pred HHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHH
Q 006737 412 ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (633)
Q Consensus 412 ~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa 468 (633)
++..+++++|+|+||||||.. +-.++..+.. .-+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~-----------~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIPP-----------QERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccCC-----------CCCEEEECCCcccc
Confidence 355678999999999999973 2222222211 12466777777764
No 370
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=86.63 E-value=5.4 Score=43.38 Aligned_cols=40 Identities=23% Similarity=0.157 Sum_probs=26.9
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
....+++|||+||.|... -.+.+.++++.-|.+.-+|++|
T Consensus 130 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t 169 (342)
T PRK06964 130 RGGARVVVLYPAEALNVA-AANALLKTLEEPPPGTVFLLVS 169 (342)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHhcCCCcCcEEEEEE
Confidence 456789999999999743 4556666666655555444444
No 371
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=86.57 E-value=1.7 Score=48.09 Aligned_cols=72 Identities=21% Similarity=0.186 Sum_probs=54.6
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.|+++..|..+++.+... ++.+..++|+....... ..+..+.++||||| +.+..+ +++.
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT-----dv~~rG----iDip 322 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT-----DVAARG----LHIP 322 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEe-----chhhcC----CCcc
Confidence 6999999999999888777643 78899999987655433 44566789999999 344444 7788
Q ss_pred CeeEEEEec
Q 006737 534 GLKMLVLDE 542 (633)
Q Consensus 534 ~l~~LVIDE 542 (633)
++++||.-+
T Consensus 323 ~v~~VI~~d 331 (423)
T PRK04837 323 AVTHVFNYD 331 (423)
T ss_pred ccCEEEEeC
Confidence 888877544
No 372
>PRK07004 replicative DNA helicase; Provisional
Probab=86.54 E-value=2.9 Score=47.26 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=25.2
Q ss_pred CeeEEEEecccccCCcC----hHHHHHHHHHHCC-----CCCcEEEEec
Q 006737 534 GLKMLVLDEADHLLDLG----FRKDVENIVDCLP-----RRRQSLLFSA 573 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~g----f~~~l~~Il~~lp-----k~~Q~IlfSA 573 (633)
.+++||||=.+.|...+ ....+..|...+. .++.+|++|-
T Consensus 324 ~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQ 372 (460)
T PRK07004 324 KLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQ 372 (460)
T ss_pred CCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 58899999999886321 3334455544332 2577777775
No 373
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.44 E-value=2.5 Score=46.63 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchhh
Q 006737 417 KDAVVKAKTGTGKSIA 432 (633)
Q Consensus 417 rDvLv~ApTGSGKTla 432 (633)
+.++++||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5799999999999974
No 374
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=86.41 E-value=3.3 Score=45.68 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.9
Q ss_pred cEEEEccCCCCchhhhH
Q 006737 418 DAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 418 DvLv~ApTGSGKTlayl 434 (633)
++|+.+|+|+|||....
T Consensus 50 SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 50 SMILWGPPGTGKTTLAR 66 (436)
T ss_pred eeEEECCCCCCHHHHHH
Confidence 89999999999998544
No 375
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.29 E-value=1.3 Score=43.54 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=27.7
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi 471 (633)
+-.++++++.|++|+|||.... .+...+...+ ..|++ +.+.+|...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~-ai~~~~~~~g----------~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAV-AIANEAIRKG----------YSVLF-ITASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHH-HHHHHHHHTT------------EEE-EEHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHH-HHHHHhccCC----------cceeE-eecCceeccc
Confidence 3467899999999999997543 3444454432 23544 5566666554
No 376
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=86.27 E-value=2.7 Score=44.30 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
+.++++.||+|+|||.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999754
No 377
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.90 E-value=4.2 Score=48.79 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=26.6
Q ss_pred eEEEEecccccCCcCh----HHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 536 KMLVLDEADHLLDLGF----RKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 536 ~~LVIDEAD~Lld~gf----~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
.+|+|||+|.+...+- ...+..++..+-...++.++.||-+++
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E 326 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQE 326 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHH
Confidence 4799999999975431 233444444332345577777777665
No 378
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=85.89 E-value=3.1 Score=45.00 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=27.5
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEec
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSA 573 (633)
....+++|||+||.|... -.+.+.++++.=|...-+|++|.
T Consensus 106 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred cCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEEC
Confidence 457889999999999753 45566666666555554444443
No 379
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=85.82 E-value=1.6 Score=51.86 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=27.0
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
....+++||||||.|... -...+...++..|... +++|.+|-+..
T Consensus 116 ~g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~t-ifILaTte~~K 160 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHV-IFILATTEVHK 160 (725)
T ss_pred cCCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCce-EEEEEcCChhh
Confidence 456789999999998643 3344555555544444 33444454444
No 380
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=85.82 E-value=5.8 Score=46.28 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=26.2
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
...+++||||||.|... -...+..+++..|... +++|.+|-+..
T Consensus 118 ~~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~t-vfIL~Tt~~~K 161 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHV-VFIFATTEFQK 161 (605)
T ss_pred CCcEEEEEechHhCCHH-HHHHHHHHHHhCCCcE-EEEEECCChHh
Confidence 45678999999998643 3345555555555444 44444454443
No 381
>PRK05748 replicative DNA helicase; Provisional
Probab=85.80 E-value=3.9 Score=45.87 Aligned_cols=142 Identities=19% Similarity=0.220 Sum_probs=67.6
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEE-EC
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL-VG 492 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l-~G 492 (633)
..|.-++|.|+||.|||. |.+-++.++..... -.|+|+ ..-.-..|+..++..... ++....+ .|
T Consensus 201 ~~G~livIaarpg~GKT~-~al~ia~~~a~~~g---------~~v~~f-SlEms~~~l~~R~l~~~~---~v~~~~i~~~ 266 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTA-FALNIAQNVATKTD---------KNVAIF-SLEMGAESLVMRMLCAEG---NIDAQRLRTG 266 (448)
T ss_pred CCCceEEEEeCCCCCchH-HHHHHHHHHHHhCC---------CeEEEE-eCCCCHHHHHHHHHHHhc---CCCHHHhhcC
Confidence 345668889999999996 44445444332111 125554 444455566555543322 2221111 12
Q ss_pred CccchHHHH-------HHhcCCCcEEEE-Cc----hhhHHHHhcccCcccccCCeeEEEEecccccCCcC-----hHHHH
Q 006737 493 GTRFKVDQR-------RLESDPCQILVA-TP----GRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-----FRKDV 555 (633)
Q Consensus 493 g~~~~~~~~-------~l~~~~~dILIa-TP----grLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~g-----f~~~l 555 (633)
... ..+.. .+.. ..+.|. +| ..+...+..- ......+++||||=.+.|-..+ ....+
T Consensus 267 ~l~-~~e~~~~~~a~~~l~~--~~~~i~d~~~~ti~~i~~~~r~~---~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i 340 (448)
T PRK05748 267 QLT-DDDWPKLTIAMGSLSD--APIYIDDTPGIKVTEIRARCRRL---AQEHGGLGLILIDYLQLIQGSGRSGENRQQEV 340 (448)
T ss_pred CCC-HHHHHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHH---HHhcCCCCEEEEccchhcCCCCCCCcCHHHHH
Confidence 222 11221 2222 245553 44 3333333221 0111268899999999884221 22334
Q ss_pred HHHHHHCC-----CCCcEEEEeccC
Q 006737 556 ENIVDCLP-----RRRQSLLFSATM 575 (633)
Q Consensus 556 ~~Il~~lp-----k~~Q~IlfSATl 575 (633)
..|...+. .++.+|++|-.-
T Consensus 341 ~~i~~~LK~lAke~~i~vi~lsQln 365 (448)
T PRK05748 341 SEISRSLKALAKELKVPVIALSQLS 365 (448)
T ss_pred HHHHHHHHHHHHHhCCeEEEecccC
Confidence 44444332 257777777644
No 382
>PRK08760 replicative DNA helicase; Provisional
Probab=85.77 E-value=3.3 Score=47.03 Aligned_cols=139 Identities=20% Similarity=0.208 Sum_probs=65.2
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEE-EC
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL-VG 492 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l-~G 492 (633)
..|.=++|.|.||.|||.. ++-+...+..... ..|+|++ .-.-..|+..++...... +....+ .|
T Consensus 227 ~~G~LivIaarPg~GKTaf-al~iA~~~a~~~g---------~~V~~fS-lEMs~~ql~~Rl~a~~s~---i~~~~i~~g 292 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTF-ALNIAEYAAIKSK---------KGVAVFS-MEMSASQLAMRLISSNGR---INAQRLRTG 292 (476)
T ss_pred CCCceEEEEeCCCCChhHH-HHHHHHHHHHhcC---------CceEEEe-ccCCHHHHHHHHHHhhCC---CcHHHHhcC
Confidence 3455678889999999964 4444444432111 1255553 333345555555444321 211111 12
Q ss_pred CccchHHH-------HHHhcCCCcEEEE-C----chhhHHHHhcccCcccccCCeeEEEEecccccCCcC----hHHHHH
Q 006737 493 GTRFKVDQ-------RRLESDPCQILVA-T----PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG----FRKDVE 556 (633)
Q Consensus 493 g~~~~~~~-------~~l~~~~~dILIa-T----PgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~g----f~~~l~ 556 (633)
... ..++ ..+.. ..|.|. + +..+...+..- ..-..+++||||=.+.|...+ ....+.
T Consensus 293 ~l~-~~e~~~~~~a~~~l~~--~~l~I~d~~~~t~~~I~~~~r~l----~~~~~~~lVvIDyLql~~~~~~~~~r~~ei~ 365 (476)
T PRK08760 293 ALE-DEDWARVTGAIKMLKE--TKIFIDDTPGVSPEVLRSKCRRL----KREHDLGLIVIDYLQLMSVPGNSENRATEIS 365 (476)
T ss_pred CCC-HHHHHHHHHHHHHHhc--CCEEEeCCCCCCHHHHHHHHHHH----HHhcCCCEEEEecHHhcCCCCCCcccHHHHH
Confidence 211 1111 12222 345554 2 33333333221 112358899999999875221 223344
Q ss_pred HHHHHC---CC--CCcEEEEec
Q 006737 557 NIVDCL---PR--RRQSLLFSA 573 (633)
Q Consensus 557 ~Il~~l---pk--~~Q~IlfSA 573 (633)
.|...| -+ ++.+|++|-
T Consensus 366 ~Isr~LK~lAkel~ipVi~lsQ 387 (476)
T PRK08760 366 EISRSLKGLAKELNVPVIALSQ 387 (476)
T ss_pred HHHHHHHHHHHHhCCEEEEeec
Confidence 443333 22 566777663
No 383
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=85.71 E-value=2.7 Score=47.21 Aligned_cols=70 Identities=23% Similarity=0.241 Sum_probs=53.1
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++++.-|..+++.+... ++.+..++|+...... ...+..+..+||||| +.+..+ +++.
T Consensus 247 ~~lVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~rG----iDip 312 (456)
T PRK10590 247 QVLVFTRTKHGANHLAEQLNKD-----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAARG----LDIE 312 (456)
T ss_pred cEEEEcCcHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHhcC----CCcc
Confidence 5899999999999988777654 6788999998776543 345566788999999 344444 7778
Q ss_pred CeeEEEE
Q 006737 534 GLKMLVL 540 (633)
Q Consensus 534 ~l~~LVI 540 (633)
+|++||.
T Consensus 313 ~v~~VI~ 319 (456)
T PRK10590 313 ELPHVVN 319 (456)
T ss_pred cCCEEEE
Confidence 8888774
No 384
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=85.54 E-value=1.9 Score=46.65 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=17.3
Q ss_pred HHhCCCcEEEEccCCCCchh
Q 006737 412 ACLEGKDAVVKAKTGTGKSI 431 (633)
Q Consensus 412 ~il~grDvLv~ApTGSGKTl 431 (633)
++..+++++|+|+||||||.
T Consensus 156 ~v~~~~nili~G~tgSGKTT 175 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT 175 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH
Confidence 34567899999999999997
No 385
>PTZ00110 helicase; Provisional
Probab=85.29 E-value=2.9 Score=48.23 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=54.2
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
.++||.|+|+.-|..+...+... ++.+.+++|+....... ..++.+...|||||. .+..+ +++
T Consensus 378 ~k~LIF~~t~~~a~~l~~~L~~~-----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~rG----IDi 443 (545)
T PTZ00110 378 DKILIFVETKKGADFLTKELRLD-----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VASRG----LDV 443 (545)
T ss_pred CeEEEEecChHHHHHHHHHHHHc-----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhhcC----CCc
Confidence 47999999999999988777643 67788999987765433 455667789999993 44443 778
Q ss_pred CCeeEEEEe
Q 006737 533 MGLKMLVLD 541 (633)
Q Consensus 533 s~l~~LVID 541 (633)
.+|.+||.=
T Consensus 444 ~~v~~VI~~ 452 (545)
T PTZ00110 444 KDVKYVINF 452 (545)
T ss_pred ccCCEEEEe
Confidence 888888863
No 386
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=85.28 E-value=0.92 Score=53.49 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=36.6
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
.+++++||||||||..|++|-+-.. .. .+||+-|--|+........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~---~g----------S~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF---KG----------SVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC---CC----------CEEEEeCCchHHHHHHHHHHh
Confidence 4899999999999999999986431 11 288999999988776544443
No 387
>PRK09165 replicative DNA helicase; Provisional
Probab=85.22 E-value=3.9 Score=46.70 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=17.5
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l 441 (633)
.|.=+++.|+||.|||.. .+-+...+
T Consensus 216 ~g~livIaarpg~GKT~~-al~ia~~~ 241 (497)
T PRK09165 216 PSDLIILAGRPSMGKTAL-ATNIAFNA 241 (497)
T ss_pred CCceEEEEeCCCCChHHH-HHHHHHHH
Confidence 455678899999999964 33333333
No 388
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=85.19 E-value=3.1 Score=41.73 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCCchhhhH
Q 006737 415 EGKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlayl 434 (633)
.|.-+++.+++|+|||...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678999999999997543
No 389
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=85.14 E-value=3.9 Score=45.78 Aligned_cols=73 Identities=22% Similarity=0.366 Sum_probs=54.5
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.|+|+.-|..+++.+... ++.+..++|+....... ..+..+..+|||||- .+..+ +++.
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~-----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~~rG----iDi~ 309 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQ-----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VAARG----LDIK 309 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----ccccc----cchh
Confidence 5899999999999998887654 67889999988765433 345567789999993 33333 6677
Q ss_pred CeeEEEEecc
Q 006737 534 GLKMLVLDEA 543 (633)
Q Consensus 534 ~l~~LVIDEA 543 (633)
++.+||.-+.
T Consensus 310 ~v~~VI~~d~ 319 (460)
T PRK11776 310 ALEAVINYEL 319 (460)
T ss_pred cCCeEEEecC
Confidence 8888776544
No 390
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=84.95 E-value=7.6 Score=40.78 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchhh
Q 006737 417 KDAVVKAKTGTGKSIA 432 (633)
Q Consensus 417 rDvLv~ApTGSGKTla 432 (633)
+++++.+|||+|||..
T Consensus 112 ~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL 127 (270)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 5889999999999983
No 391
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=84.92 E-value=0.73 Score=54.12 Aligned_cols=160 Identities=20% Similarity=0.258 Sum_probs=92.0
Q ss_pred CCCcHHHHHHHHHHhCCC----------cEEEEccC--CCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHH
Q 006737 400 IQMTRVQEATLSACLEGK----------DAVVKAKT--GTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~gr----------DvLv~ApT--GSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReL 467 (633)
..++.+|.+++-..+... -.||--.. |-|.|.|-+ |++..++.. -++|+++=+..|
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi--IfeNyLkGR----------KrAlW~SVSsDL 330 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI--IFENYLKGR----------KRALWFSVSSDL 330 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE--Eehhhhccc----------ceeEEEEecccc
Confidence 356777877776554422 24444333 456666544 344444432 369999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEE----CCccchHHHHHHhcCCCcEEEECchhhHHHHhcccC-ccccc--------CC
Q 006737 468 ASQIAAEAIALLKNHDGIGVLTLV----GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG-LSVRL--------MG 534 (633)
Q Consensus 468 a~Qi~~~l~~l~~~~~~i~v~~l~----Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~-~~~~L--------s~ 534 (633)
-.+..+.+..+... +|.|..+. +..+.+ .....+ --||+||.-.|+---....+ ....+ .+
T Consensus 331 KfDAERDL~DigA~--~I~V~alnK~KYakIss~-en~n~k---rGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~ 404 (1300)
T KOG1513|consen 331 KFDAERDLRDIGAT--GIAVHALNKFKYAKISSK-ENTNTK---RGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGED 404 (1300)
T ss_pred ccchhhchhhcCCC--Cccceehhhccccccccc-ccCCcc---ceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhc
Confidence 88888888777542 45554332 111111 111112 25999998766432221110 00001 11
Q ss_pred e-eEEEEecccccCCc---------ChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 535 L-KMLVLDEADHLLDL---------GFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 535 l-~~LVIDEAD~Lld~---------gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
+ .+||+||+|.--+. -....+..+-+.|| +.++|.-|||=..+
T Consensus 405 feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGAsE 457 (1300)
T KOG1513|consen 405 FEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGASE 457 (1300)
T ss_pred cceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCCCC
Confidence 1 37999999976441 16677888888887 56689999997655
No 392
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=84.90 E-value=3.8 Score=47.31 Aligned_cols=60 Identities=27% Similarity=0.280 Sum_probs=41.1
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
++-+||+|..|||||.+.+ +=+..++-.-.+ +...+ .+||+.|.+-+..-|.+++-.++.
T Consensus 226 ~~ilVVQGaAGSGKTtiAL-HRvAyLlY~~R~---~l~~k-~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 226 NKILVVQGAAGSGKTTIAL-HRVAYLLYGYRG---PLQAK-PVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred CCeEEEecCCCCCchhHHH-HHHHHHHhcccc---ccccC-ceEEEcCcHHHHHHHHHhchhhcc
Confidence 4568999999999998743 333333322111 11112 299999999999999999888864
No 393
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=84.86 E-value=1.2 Score=45.70 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
++|++||+|+|||..
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 699999999999973
No 394
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=84.72 E-value=11 Score=36.64 Aligned_cols=41 Identities=7% Similarity=0.258 Sum_probs=25.1
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEecc
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
....++|||||+|.|... ....+...++..++..- ++|.++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~-~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTL-FILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeE-EEEEEC
Confidence 456789999999998743 33445555555444444 444444
No 395
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.50 E-value=7.6 Score=46.97 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=35.5
Q ss_pred eeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 535 l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
--+||||++|.+.+......+..++..++....+|+.|-+.++
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 3479999999997666777888999999988999888877544
No 396
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=84.49 E-value=7.9 Score=41.63 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
+.-+++++|+|+|||...
T Consensus 114 ~~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTI 131 (318)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456788999999999753
No 397
>PRK08840 replicative DNA helicase; Provisional
Probab=84.45 E-value=6.7 Score=44.40 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=24.5
Q ss_pred CeeEEEEecccccCCcC----hHHHHHHHHHHCC-----CCCcEEEEec
Q 006737 534 GLKMLVLDEADHLLDLG----FRKDVENIVDCLP-----RRRQSLLFSA 573 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~g----f~~~l~~Il~~lp-----k~~Q~IlfSA 573 (633)
.+++||||=.+.|...+ ....+..|...|. -++.+|++|-
T Consensus 329 ~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQ 377 (464)
T PRK08840 329 GLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQ 377 (464)
T ss_pred CCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 58899999999885222 2233444443332 2577888773
No 398
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.41 E-value=3.7 Score=49.10 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=30.2
Q ss_pred ccCccccCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~---g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
..+|++++-.+.+.+.|... .+..+.-++..- +...+.+++.||+|+|||+.
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLL 503 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHH
Confidence 34678887777777666553 111111111110 11235699999999999983
No 399
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=84.28 E-value=4.9 Score=40.06 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
|.-+++.+++|+|||...
T Consensus 19 g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999743
No 400
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.27 E-value=1.3 Score=50.06 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHhCCC--cEEEEccCCCCchhhhHHHHHHHHHHh
Q 006737 403 TRVQEATLSACLEGK--DAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (633)
Q Consensus 403 t~iQ~~aIp~il~gr--DvLv~ApTGSGKTlaylLPiL~~l~~~ 444 (633)
++.|...+-.+++.. =+|+.||||||||.. +..+++.+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 567777777766644 478999999999975 45566666543
No 401
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=84.26 E-value=8.6 Score=43.12 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
-+++++++|+|||.+.
T Consensus 102 vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTC 117 (429)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999753
No 402
>PRK10436 hypothetical protein; Provisional
Probab=84.03 E-value=1.3 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=18.3
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHH
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAV 441 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l 441 (633)
+.-+|+++|||||||... ..++..+
T Consensus 218 ~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 218 QGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CCeEEEECCCCCChHHHH-HHHHHhh
Confidence 446899999999999852 3455554
No 403
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.03 E-value=10 Score=41.05 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=14.2
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
+.++++||.|+|||...
T Consensus 40 ~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 40 QALLFCGPRGVGKTTCA 56 (367)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999743
No 404
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.00 E-value=1.4 Score=41.53 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=32.9
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
...+++|+||...=+|......+..++..+....++++++.--...+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 143 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA 143 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 45678999999998887777788777776544334666665554443
No 405
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=83.77 E-value=8.8 Score=45.36 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=71.2
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
-++||+++|+..|..+.+.+... ++.+..++|+...... ...+..+..+|+||| ..+..+ +++
T Consensus 443 ~~vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~rG----fDi 508 (655)
T TIGR00631 443 ERVLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG----LDL 508 (655)
T ss_pred CEEEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----ChhcCC----eee
Confidence 46999999999999988887765 6778888887654332 234556778999998 344444 778
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCC--CCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLP--RRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp--k~~Q~IlfSATl~~e 578 (633)
..+++||+=+++...-......+.+++.... ....++++--..+..
T Consensus 509 P~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~ 556 (655)
T TIGR00631 509 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDS 556 (655)
T ss_pred CCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHH
Confidence 8999999888887532222233333332221 234466665566554
No 406
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.76 E-value=3.1 Score=39.97 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=35.4
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~ 580 (633)
+.+-+++++||--.-+|......+..++..+... .+|+++..-...+.
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~ 159 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVIAHRLSTIR 159 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEEecCHHHHH
Confidence 4567899999999988888888888888877554 56666655444443
No 407
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=83.74 E-value=4.2 Score=46.33 Aligned_cols=52 Identities=25% Similarity=0.220 Sum_probs=31.4
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
.|.-+++.+++|+|||...+--+.+. .... -+++|++ +-+...++.+.+..+
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~-~~~g----------~~~~yis-~e~~~~~i~~~~~~~ 323 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAA-CRRG----------ERCLLFA-FEESRAQLIRNARSW 323 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HhCC----------CcEEEEE-ecCCHHHHHHHHHHc
Confidence 35678899999999997433223222 2221 1377775 445566776666554
No 408
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.66 E-value=6.7 Score=44.23 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=54.2
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
.+||.++|+..|.+++..+... ++.+..++++....... ..+..+.++|||||. .+..+ +++.
T Consensus 228 ~~IIF~~s~~~~e~la~~L~~~-----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-----~~~~G----ID~p 293 (470)
T TIGR00614 228 SGIIYCPSRKKSEQVTASLQNL-----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-----AFGMG----INKP 293 (470)
T ss_pred ceEEEECcHHHHHHHHHHHHhc-----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-----hhhcc----CCcc
Confidence 4799999999999998887754 78889999987765433 345567889999993 23333 6677
Q ss_pred CeeEEEEecc
Q 006737 534 GLKMLVLDEA 543 (633)
Q Consensus 534 ~l~~LVIDEA 543 (633)
++++||.-..
T Consensus 294 ~V~~VI~~~~ 303 (470)
T TIGR00614 294 DVRFVIHYSL 303 (470)
T ss_pred cceEEEEeCC
Confidence 8888776544
No 409
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=83.58 E-value=4.7 Score=38.96 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=34.3
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~ 580 (633)
+.+-+++|+||.-.-+|......+..++..+.+. .+|+++..-...+.
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~ 161 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITHHLTGIE 161 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEecCHHHHH
Confidence 5667899999999988887777887887766543 45666555444443
No 410
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=83.52 E-value=6.6 Score=43.59 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=29.7
Q ss_pred cCccccCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 379 KRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~---g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
.+|++++--+...+.|... -+..|.-++..- +...+.+++.||+|+|||+.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHH
Confidence 3577876555555555442 222222222111 12357899999999999984
No 411
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=83.50 E-value=2 Score=45.19 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCchhh
Q 006737 417 KDAVVKAKTGTGKSIA 432 (633)
Q Consensus 417 rDvLv~ApTGSGKTla 432 (633)
..++++||+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999973
No 412
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.47 E-value=2.5 Score=48.06 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=30.5
Q ss_pred cccccCccccC---CCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 375 ILSQKRFDECG---ISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 375 ~~~~~~F~el~---L~~~Ll~~L~~~---g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
+.+.-.|++|| |+.+.-..+... -...|.-+.+--+++ =+-+|+.+|+|+||||.
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~H---VKGiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKH---VKGILLYGPPGTGKTLI 272 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccc---eeeEEEECCCCCChhHH
Confidence 33445688886 455444333322 111222233333332 25789999999999984
No 413
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=83.40 E-value=3.9 Score=40.19 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=38.9
Q ss_pred CCeeEEEEecccccCCcCh--HHHHHHHHHHCCCCCcEEEEeccCChhhhccc
Q 006737 533 MGLKMLVLDEADHLLDLGF--RKDVENIVDCLPRRRQSLLFSATMPKELVLKR 583 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf--~~~l~~Il~~lpk~~Q~IlfSATl~~el~l~~ 583 (633)
..+++||+||+-..++.++ ...+..+++.-|...-+|+..-..|+++.-..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 4689999999998887773 56778888888877777777777777764433
No 414
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=83.37 E-value=3.5 Score=46.46 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=53.7
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.|++++-|..+++.+... ++.+..++|+....... ..+..+...||||| +.+..+ +++.
T Consensus 337 ~~IVF~~s~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT-----~~l~~G----IDi~ 402 (475)
T PRK01297 337 RVMVFANRKDEVRRIEERLVKD-----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-----DVAGRG----IHID 402 (475)
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEc-----cccccC----Cccc
Confidence 6999999999999888777544 67788889987765543 44556778999999 344444 7788
Q ss_pred CeeEEEEe
Q 006737 534 GLKMLVLD 541 (633)
Q Consensus 534 ~l~~LVID 541 (633)
++++||.-
T Consensus 403 ~v~~VI~~ 410 (475)
T PRK01297 403 GISHVINF 410 (475)
T ss_pred CCCEEEEe
Confidence 89888864
No 415
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=83.30 E-value=4.4 Score=46.05 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=29.7
Q ss_pred cccCccccCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 377 SQKRFDECGISPLTIKALTAAG--YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g--~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
+..+|+++.-.+.+...+...- +..+..++..- ....+.+++.+|+|+|||+.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHH
Confidence 3456888866666555544320 12222221111 11235799999999999984
No 416
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=83.06 E-value=5.2 Score=45.15 Aligned_cols=52 Identities=29% Similarity=0.326 Sum_probs=31.8
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
.|.-+++.+++|+|||...+- ++..+.... -++||+.- .+-..|+...+..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq-~a~~~a~~g----------~kvlYvs~-EEs~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQ-VACQLAKNQ----------MKVLYVSG-EESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHH-HHHHHHhcC----------CcEEEEEC-cCCHHHHHHHHHHc
Confidence 466789999999999975332 333332221 14788765 35556766555544
No 417
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.01 E-value=5.9 Score=45.20 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=32.0
Q ss_pred ccCCCHHHHHHHHHcCCCCCcHHHHHHHHH-------HhC-----CCcEEEEccCCCCchhh
Q 006737 383 ECGISPLTIKALTAAGYIQMTRVQEATLSA-------CLE-----GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 383 el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~-------il~-----grDvLv~ApTGSGKTla 432 (633)
.+|++++.++.....|.-...+.-...+.. +.+ -..|++.+|.|||||..
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaL 554 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTAL 554 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHH
Confidence 467888888887777655444433333321 111 13799999999999963
No 418
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=82.93 E-value=1.7 Score=51.06 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=35.2
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.++++.||||+|||..+++|-+- .... -+||+-|--|+...+....
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL---~~~g----------S~VV~DpKgEl~~~Ta~~R 270 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTAL---KWGG----------PLVVLDPSTEVAPMVSEHR 270 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhh---cCCC----------CEEEEeCcHHHHHHHHHHH
Confidence 48999999999999999999752 2111 2788889999887665544
No 419
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=82.93 E-value=7.6 Score=44.76 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=28.8
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
....+++||||||.|... -...+.++++..|....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 456789999999998743 3456667777767777666655
No 420
>PF12846 AAA_10: AAA-like domain
Probab=82.92 E-value=1.6 Score=44.83 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=19.5
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
.+++|+|+||+|||.+.. .++..+..
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~ 27 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR 27 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH
Confidence 579999999999998765 44444443
No 421
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.74 E-value=1.2 Score=52.18 Aligned_cols=41 Identities=32% Similarity=0.362 Sum_probs=33.0
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEec
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSA 573 (633)
+++-.+||+|||---||..-...+...+..+.++ ++++.=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEe
Confidence 5677899999999999988888888888877666 5666544
No 422
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=82.65 E-value=5.8 Score=45.07 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=34.4
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
.|+-+++.+++|+|||+..+--+.+.+.+... .+||++= -|-..++.+.+..+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge----------~~lyvs~-eE~~~~l~~~~~~~G 73 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE----------PGVFVTF-EESPQDIIKNARSFG 73 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC----------CEEEEEE-ecCHHHHHHHHHHcC
Confidence 46789999999999997543333333333111 2677763 466677777766664
No 423
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.57 E-value=47 Score=35.75 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=27.9
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCC-----cEEEEccCCCCchh
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGK-----DAVVKAKTGTGKSI 431 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~gr-----DvLv~ApTGSGKTl 431 (633)
..|++.-=-+...++|++.=+ -|| -+|+++.|+ -+|+.+|+|+||+.
T Consensus 130 VkWsDVAGLE~AKeALKEAVI---LPI---KFPqlFtGkR~PwrgiLLyGPPGTGKSY 181 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVI---LPI---KFPQLFTGKRKPWRGILLYGPPGTGKSY 181 (439)
T ss_pred CchhhhccchhHHHHHHhhee---ecc---cchhhhcCCCCcceeEEEeCCCCCcHHH
Confidence 446665333444555554211 111 136777764 58999999999985
No 424
>PRK08006 replicative DNA helicase; Provisional
Probab=82.57 E-value=10 Score=43.12 Aligned_cols=140 Identities=18% Similarity=0.175 Sum_probs=66.1
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEE-CC
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV-GG 493 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~-Gg 493 (633)
.|.=+++.|.+|.|||. |++-+..++.... +..|+|++. -.-..|+..++..... ++....+. |.
T Consensus 223 ~G~LiiIaarPgmGKTa-falnia~~~a~~~---------g~~V~~fSl-EM~~~ql~~Rlla~~~---~v~~~~i~~~~ 288 (471)
T PRK08006 223 PSDLIIVAARPSMGKTT-FAMNLCENAAMLQ---------DKPVLIFSL-EMPGEQIMMRMLASLS---RVDQTRIRTGQ 288 (471)
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHhc---------CCeEEEEec-cCCHHHHHHHHHHHhc---CCCHHHhhcCC
Confidence 45557788999999996 4444444433211 112555543 3444555555443322 22222121 22
Q ss_pred ccchHHHHH-------HhcCCCcEEEE-----CchhhHHHHhcccCcccccCCeeEEEEecccccCCc----ChHHHHHH
Q 006737 494 TRFKVDQRR-------LESDPCQILVA-----TPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL----GFRKDVEN 557 (633)
Q Consensus 494 ~~~~~~~~~-------l~~~~~dILIa-----TPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~----gf~~~l~~ 557 (633)
.. ..++.. +.. ...+.|- |+..+...+..- ......+++||||=.+.|-.. .....+..
T Consensus 289 l~-~~e~~~~~~a~~~~~~-~~~l~I~d~~~~t~~~i~~~~r~~---~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~ 363 (471)
T PRK08006 289 LD-DEDWARISGTMGILLE-KRNMYIDDSSGLTPTEVRSRARRI---FREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAE 363 (471)
T ss_pred CC-HHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHH---HHhcCCCCEEEEccHHHccCCCCCCCcHHHHHH
Confidence 22 122211 211 2345553 233333322211 111236899999999987522 12334555
Q ss_pred HHHHCC-----CCCcEEEEec
Q 006737 558 IVDCLP-----RRRQSLLFSA 573 (633)
Q Consensus 558 Il~~lp-----k~~Q~IlfSA 573 (633)
|...|. -++.+|++|-
T Consensus 364 isr~LK~lAkel~ipVi~LsQ 384 (471)
T PRK08006 364 ISRSLKALAKELQVPVVALSQ 384 (471)
T ss_pred HHHHHHHHHHHhCCeEEEEEe
Confidence 544332 2577888873
No 425
>PRK05636 replicative DNA helicase; Provisional
Probab=82.52 E-value=3.7 Score=47.00 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=24.8
Q ss_pred CCeeEEEEecccccCCcC----hHHHHHHHHHHC---CC--CCcEEEEec
Q 006737 533 MGLKMLVLDEADHLLDLG----FRKDVENIVDCL---PR--RRQSLLFSA 573 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~g----f~~~l~~Il~~l---pk--~~Q~IlfSA 573 (633)
..+++||||=.+.|.... ....+..|...| -+ ++.+|++|-
T Consensus 374 ~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~lsQ 423 (505)
T PRK05636 374 HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAISQ 423 (505)
T ss_pred cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 458999999999886321 223344443333 22 577777774
No 426
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=82.51 E-value=3.5 Score=39.69 Aligned_cols=48 Identities=23% Similarity=0.332 Sum_probs=34.2
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+.+-+++|+||--.-+|......+..++..+.....+++++..-...+
T Consensus 112 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL 159 (173)
T ss_pred hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 567789999999999998888888888876644334555555444444
No 427
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=82.45 E-value=1.7 Score=51.13 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=34.3
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHH
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~ 473 (633)
.+++++||||||||..+++|.|-. ... .+||+-|--|+......
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~---~~~----------S~VV~D~KGE~~~~Tag 219 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLS---WGH----------SSVITDLKGELWALTAG 219 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhh---CCC----------CEEEEeCcHHHHHHHHH
Confidence 589999999999999999998732 111 28899999999765543
No 428
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=82.44 E-value=1.1 Score=51.28 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=32.4
Q ss_pred ECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCC
Q 006737 513 ATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP 563 (633)
Q Consensus 513 aTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp 563 (633)
-+||-..++--.. +....-++.|+||+-.-++.+....+-++++...
T Consensus 571 LS~GEqQRLa~AR----Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 571 LSPGEQQRLAFAR----LFYHKPKFAILDECTSAVTEDVEGALYRKCREMG 617 (659)
T ss_pred cCHHHHHHHHHHH----HHhcCCceEEeechhhhccHHHHHHHHHHHHHcC
Confidence 3566554443322 4567788999999998888777777777776653
No 429
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=82.38 E-value=0.6 Score=53.73 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=32.4
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccC
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl 575 (633)
+++-.++|+|||..-+|..-...+...+..+.+++.+++.+-=+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRl 524 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRL 524 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence 56668999999999999888888888877665665455544333
No 430
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=82.29 E-value=3.4 Score=38.79 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=30.8
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
+.+-+++|+||.-.-+|......+..++..+. .+++++.--...
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th~~~~ 129 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSHDRYF 129 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEECCHHH
Confidence 44667899999998888877788887777662 355555443333
No 431
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=82.24 E-value=2.4 Score=41.53 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=24.9
Q ss_pred CCcHHHHHHHHHHh-CCCcEEEEccCCCCchhh
Q 006737 401 QMTRVQEATLSACL-EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 401 ~pt~iQ~~aIp~il-~grDvLv~ApTGSGKTla 432 (633)
.+++-|...+.... .|..++++++||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 45666777776644 577999999999999984
No 432
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.06 E-value=1.7 Score=50.33 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=28.0
Q ss_pred HHHcCCCCCcHHHHHHHHHHhC--CCcEEEEccCCCCchhhhHHHHHHHH
Q 006737 394 LTAAGYIQMTRVQEATLSACLE--GKDAVVKAKTGTGKSIAFLLPAIEAV 441 (633)
Q Consensus 394 L~~~g~~~pt~iQ~~aIp~il~--grDvLv~ApTGSGKTlaylLPiL~~l 441 (633)
|.+.|| .+-|.+.+..++. +.-++++||||||||... ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 445554 4555556555444 346889999999999753 3455554
No 433
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=82.05 E-value=8.6 Score=41.13 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
.++++||.|+|||.+.
T Consensus 38 ~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA 53 (355)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999743
No 434
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=81.89 E-value=10 Score=41.67 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=39.0
Q ss_pred CeeEEEEecccccCCcC--hHHHHHHHHHHCCCCCcEEEEeccCChhhhc
Q 006737 534 GLKMLVLDEADHLLDLG--FRKDVENIVDCLPRRRQSLLFSATMPKELVL 581 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~g--f~~~l~~Il~~lpk~~Q~IlfSATl~~el~l 581 (633)
.--+||+|-||.+-|++ ..+.+.++-..++...-.|+||++..+....
T Consensus 115 ~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~ 164 (438)
T KOG2543|consen 115 QKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYL 164 (438)
T ss_pred ceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhh
Confidence 45589999999998876 6677778878888777789999999888544
No 435
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.62 E-value=1.1 Score=48.10 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=19.6
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
...|+++.+|||||||+... .|.+++.
T Consensus 96 ~KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eeccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 34589999999999998443 4445544
No 436
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=81.57 E-value=7.1 Score=43.75 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.9
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
-+++++++|+|||.+.
T Consensus 101 vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 101 VILMVGLQGSGKTTTC 116 (428)
T ss_pred EEEEECCCCCcHHHHH
Confidence 5789999999999864
No 437
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=81.47 E-value=6.4 Score=47.44 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
+..+++++|+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45799999999999974
No 438
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=81.46 E-value=3.9 Score=48.02 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=52.3
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.|+|+.-+.++++.+... ++.+..++|+...... ...+..+..+||||| +.+..+ +++.
T Consensus 247 ~~IVF~~tk~~a~~l~~~L~~~-----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~arG----IDip 312 (629)
T PRK11634 247 AAIIFVRTKNATLEVAEALERN-----GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVAARG----LDVE 312 (629)
T ss_pred CEEEEeccHHHHHHHHHHHHhC-----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chHhcC----CCcc
Confidence 5899999999999988877654 6788899998765543 345566788999999 344443 6677
Q ss_pred CeeEEEE
Q 006737 534 GLKMLVL 540 (633)
Q Consensus 534 ~l~~LVI 540 (633)
+|.+||.
T Consensus 313 ~V~~VI~ 319 (629)
T PRK11634 313 RISLVVN 319 (629)
T ss_pred cCCEEEE
Confidence 7777764
No 439
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=81.37 E-value=1.5 Score=50.83 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=34.3
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+.+-+++|+||+-.-+|......+...+..+.++ .++++.+--...+
T Consensus 491 l~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~-~tviiitHr~~~~ 537 (574)
T PRK11160 491 LHDAPLLLLDEPTEGLDAETERQILELLAEHAQN-KTVLMITHRLTGL 537 (574)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCC-CEEEEEecChhHH
Confidence 5677899999999999887888888887776544 4555555544444
No 440
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=81.36 E-value=2.3 Score=41.63 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=30.0
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCC-CCcEEEEecc
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPR-RRQSLLFSAT 574 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk-~~Q~IlfSAT 574 (633)
.+-+++|+||...-++......+..++..+.. ..++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 46688999999999988777777777665533 3566665543
No 441
>PRK10867 signal recognition particle protein; Provisional
Probab=81.14 E-value=15 Score=41.23 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
-+++++++|+|||.+.
T Consensus 102 vI~~vG~~GsGKTTta 117 (433)
T PRK10867 102 VIMMVGLQGAGKTTTA 117 (433)
T ss_pred EEEEECCCCCcHHHHH
Confidence 5789999999999754
No 442
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=81.01 E-value=4.4 Score=46.91 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=32.8
Q ss_pred cccccCccccCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 375 ILSQKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 375 ~~~~~~F~el~L~~~Ll~~L~~~---g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
..+..+|++.|--..+...|.-. -+++|.-+ +++-.-. -.-+|+|+|.|+||||.
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~--k~lGi~~-PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLF--KALGIDA-PSGVLLCGPPGCGKTLL 561 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHH--HHhCCCC-CCceEEeCCCCccHHHH
Confidence 34567799998666666555431 23333222 2222211 23699999999999983
No 443
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=80.96 E-value=13 Score=46.06 Aligned_cols=144 Identities=14% Similarity=0.135 Sum_probs=96.8
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHH--HhcCCCCCC--------------------CCCCeEEEEEc
Q 006737 405 VQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVL--KATSSSTTQ--------------------LVPPIYVLILC 462 (633)
Q Consensus 405 iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~--~~~~~~~~~--------------------~~~~~~vLILv 462 (633)
-|++.|..+...-|||--+.|=-=.||-..+.-+..+. ...+..+.. ...+-++.||.
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 36777777777777777777766667643333222111 111100000 01255899999
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEE
Q 006737 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (633)
Q Consensus 463 PTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LV 539 (633)
|..+-..++...++.+. +..++++.+|......- ...+..+..||||||. +++++ +++.+...||
T Consensus 811 NrV~~Ie~~~~~L~~LV---PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIEtG----IDIPnANTiI 878 (1139)
T COG1197 811 NRVESIEKKAERLRELV---PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIETG----IDIPNANTII 878 (1139)
T ss_pred cchhhHHHHHHHHHHhC---CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eeecC----cCCCCCceEE
Confidence 99999999999999986 47889999998765432 3455667899999994 44554 7788999999
Q ss_pred EecccccCCcChHHHHHHHHHHCCC
Q 006737 540 LDEADHLLDLGFRKDVENIVDCLPR 564 (633)
Q Consensus 540 IDEAD~Lld~gf~~~l~~Il~~lpk 564 (633)
|+-||++. ..++.++.....+
T Consensus 879 Ie~AD~fG----LsQLyQLRGRVGR 899 (1139)
T COG1197 879 IERADKFG----LAQLYQLRGRVGR 899 (1139)
T ss_pred Eecccccc----HHHHHHhccccCC
Confidence 99999976 3466666655544
No 444
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=80.90 E-value=8.6 Score=41.47 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=26.6
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa 468 (633)
.|+-+.|.+|+|+|||... +.++....... -.|++|..-..+.
T Consensus 54 ~G~iteI~G~~GsGKTtLa-L~~~~~~~~~g----------~~v~yId~E~~~~ 96 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLA-LHAIAEAQKAG----------GTAAFIDAEHALD 96 (321)
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHHcC----------CcEEEEcccchhH
Confidence 4677899999999999753 44444433321 2377775544333
No 445
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=80.81 E-value=6.1 Score=44.91 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=61.5
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
+.+||.+.+..-|.-+.+.+.++ +++++.++|+.+..... ..++.+..+|+|||. ...+ .+++
T Consensus 518 ppiIIFvN~kk~~d~lAk~LeK~-----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----vAgR----GIDI 583 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKILEKA-----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD-----VAGR----GIDI 583 (673)
T ss_pred CCEEEEEechhhHHHHHHHHhhc-----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----cccc----CCCC
Confidence 34899999999999888888776 78999999998876543 344555679999994 2222 3667
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCC
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLP 563 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp 563 (633)
.+|.+|| +.+|...+...++.+.
T Consensus 584 pnVSlVi--------nydmaksieDYtHRIG 606 (673)
T KOG0333|consen 584 PNVSLVI--------NYDMAKSIEDYTHRIG 606 (673)
T ss_pred Cccceee--------ecchhhhHHHHHHHhc
Confidence 7777665 4456666666666554
No 446
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=80.77 E-value=2.3 Score=47.18 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.1
Q ss_pred HhCCCcEEEEccCCCCchhh
Q 006737 413 CLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTla 432 (633)
+-.|+-+++.+|+|+|||..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCCCChhHH
Confidence 34688999999999999974
No 447
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=80.73 E-value=2.9 Score=49.33 Aligned_cols=115 Identities=21% Similarity=0.323 Sum_probs=61.2
Q ss_pred EEEEccCCCCchhhhHHHHHH-HHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccch
Q 006737 419 AVVKAKTGTGKSIAFLLPAIE-AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (633)
Q Consensus 419 vLv~ApTGSGKTlaylLPiL~-~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~ 497 (633)
.|+.---|-|||..-+.-++. ...... ........-.|||+|+- +..|...++.+. .....+.+.+++| ...
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~~---~~~~~~~kttLivcp~s-~~~qW~~elek~-~~~~~l~v~v~~g--r~k 227 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSKE---EDRQKEFKTTLIVCPTS-LLTQWKTELEKV-TEEDKLSIYVYHG--RTK 227 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCcc---hhhccccCceeEecchH-HHHHHHHHHhcc-CCccceEEEEecc--ccc
Confidence 455556688999864333322 111110 00001122378888864 445555555333 2233566777777 111
Q ss_pred HHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcC
Q 006737 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550 (633)
Q Consensus 498 ~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~g 550 (633)
+...+ .+.+|+++|++.+.. .. ...-.--.||+||||.+.+..
T Consensus 228 -d~~el--~~~dVVltTy~il~~----~~---l~~i~w~Riildea~~ikn~~ 270 (674)
T KOG1001|consen 228 -DKSEL--NSYDVVLTTYDILKN----SP---LVKIKWLRIVLDEAHTIKNKD 270 (674)
T ss_pred -ccchh--cCCceEEeeHHHhhc----cc---ccceeEEEEEeccccccCCcc
Confidence 22222 236899999988863 10 111233469999999998753
No 448
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=80.70 E-value=3 Score=45.21 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=28.4
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEccCCCCchhh
Q 006737 391 IKALTAAGYIQMTRVQEATLSACL-EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 391 l~~L~~~g~~~pt~iQ~~aIp~il-~grDvLv~ApTGSGKTla 432 (633)
+..|.+.|+ +++.+...+..+. .+.+++++++||||||..
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl 194 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL 194 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 455555554 4566666666554 466999999999999973
No 449
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=80.56 E-value=2.2 Score=46.93 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=19.1
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
+..++|++|||||||.. +-.++.++..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 34789999999999974 3344555543
No 450
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=80.40 E-value=2.4 Score=49.69 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=35.1
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.++++.||||||||..+++|-+ +.... -+||+-|--|+.......-
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnL---L~~~g----------S~VV~DpKgE~~~~Ta~~R 257 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTA---LKYGG----------PLVCLDPSTEVAPMVCEHR 257 (623)
T ss_pred ceEEEEeCCCCCccceeehhhh---hcCCC----------CEEEEEChHHHHHHHHHHH
Confidence 4899999999999999999974 22211 1889999999977665433
No 451
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=80.38 E-value=5 Score=45.94 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=54.2
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
+++||.++++.-|..+.+.+... .++.+..++|+....... ..+..+..+|||||. .+..+ +++
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~----~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~rG----iDi 434 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVV----TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLGRG----VDL 434 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhc----cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhhcc----CCc
Confidence 35899999999998877666543 267888999987765433 455667889999994 44444 778
Q ss_pred CCeeEEEEe
Q 006737 533 MGLKMLVLD 541 (633)
Q Consensus 533 s~l~~LVID 541 (633)
.++++||.=
T Consensus 435 p~v~~VI~~ 443 (518)
T PLN00206 435 LRVRQVIIF 443 (518)
T ss_pred ccCCEEEEe
Confidence 899988863
No 452
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=80.36 E-value=2 Score=46.89 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.+.-++|++|||||||..
T Consensus 133 ~~glilI~GpTGSGKTTt 150 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL 150 (358)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 456899999999999984
No 453
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=80.30 E-value=2.5 Score=45.53 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=27.9
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEec
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSA 573 (633)
....+++|||+||.|... -.+.+.++++.-|.+.-+|+.|.
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEEC
Confidence 456789999999999743 45666677776555554444443
No 454
>PHA00729 NTP-binding motif containing protein
Probab=80.25 E-value=12 Score=38.25 Aligned_cols=68 Identities=16% Similarity=0.263 Sum_probs=34.0
Q ss_pred cEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCc-ChH----HHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 509 QILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-GFR----KDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 509 dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~-gf~----~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
..++.+...|+..|.... .....+.+||||++=.-+.. .+. .....+...+...++++.|...-+.++
T Consensus 60 ~~~fid~~~Ll~~L~~a~---~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL 132 (226)
T PHA00729 60 NSYFFELPDALEKIQDAI---DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDL 132 (226)
T ss_pred cEEEEEHHHHHHHHHHHH---hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHH
Confidence 455555566666554321 11234578999994321111 011 222334444444567777777755553
No 455
>PTZ00424 helicase 45; Provisional
Probab=80.19 E-value=4.7 Score=43.90 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=53.4
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++|+.-|..+.+.+... ++.+..++|+....... ..+..+..+|||||. .+..+ +++.
T Consensus 269 ~~ivF~~t~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l~~G----iDip 334 (401)
T PTZ00424 269 QAIIYCNTRRKVDYLTKKMHER-----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LLARG----IDVQ 334 (401)
T ss_pred eEEEEecCcHHHHHHHHHHHHC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----cccCC----cCcc
Confidence 5899999999998887766543 67889999997755433 345567889999993 33333 7788
Q ss_pred CeeEEEEec
Q 006737 534 GLKMLVLDE 542 (633)
Q Consensus 534 ~l~~LVIDE 542 (633)
++.+||.-.
T Consensus 335 ~v~~VI~~~ 343 (401)
T PTZ00424 335 QVSLVINYD 343 (401)
T ss_pred cCCEEEEEC
Confidence 888888643
No 456
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=80.13 E-value=5.6 Score=47.16 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=54.0
Q ss_pred EEEEEcccHH--------HHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcc
Q 006737 457 YVLILCPTRE--------LASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENK 525 (633)
Q Consensus 457 ~vLILvPTRe--------La~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~ 525 (633)
+++|++|+.+ -+.++++.+... .+++.+..++|+....... ..+..+..+|||||. .+..+
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~---~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie~G 544 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEA---FPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VIEVG 544 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHH---CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ceeeC
Confidence 5999999754 233444444433 3357899999997655433 345567789999994 33333
Q ss_pred cCcccccCCeeEEEEeccccc
Q 006737 526 SGLSVRLMGLKMLVLDEADHL 546 (633)
Q Consensus 526 ~~~~~~Ls~l~~LVIDEAD~L 546 (633)
+++.++.+||+..+++.
T Consensus 545 ----iDip~v~~VIi~~~~r~ 561 (681)
T PRK10917 545 ----VDVPNATVMVIENAERF 561 (681)
T ss_pred ----cccCCCcEEEEeCCCCC
Confidence 77889999999998874
No 457
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.97 E-value=2.4 Score=41.12 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=37.3
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCC-CcEEEEeccCChhhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR-RQSLLFSATMPKELV 580 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~-~Q~IlfSATl~~el~ 580 (633)
+.+-+++|+||--.-+|......+..++..+.+. -.+++++..-...+.
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 5577899999999999888888888888776544 457777776665554
No 458
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=79.91 E-value=5.2 Score=46.95 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=54.6
Q ss_pred EEEEEcccHH--------HHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcc
Q 006737 457 YVLILCPTRE--------LASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENK 525 (633)
Q Consensus 457 ~vLILvPTRe--------La~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~ 525 (633)
+++|++|+.+ -+.++++.+.+. .+++.+.+++|+.+..... ..+..+..+|||||. .+..+
T Consensus 450 q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~---~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie~G 521 (630)
T TIGR00643 450 QAYVVYPLIEESEKLDLKAAEALYERLKKA---FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIEVG 521 (630)
T ss_pred cEEEEEccccccccchHHHHHHHHHHHHhh---CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eeecC
Confidence 5899999863 344444444443 3478899999997755432 445567789999994 33333
Q ss_pred cCcccccCCeeEEEEeccccc
Q 006737 526 SGLSVRLMGLKMLVLDEADHL 546 (633)
Q Consensus 526 ~~~~~~Ls~l~~LVIDEAD~L 546 (633)
+++.++.+||+..++..
T Consensus 522 ----vDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 522 ----VDVPNATVMVIEDAERF 538 (630)
T ss_pred ----cccCCCcEEEEeCCCcC
Confidence 77889999999988874
No 459
>PRK13764 ATPase; Provisional
Probab=79.77 E-value=3.3 Score=48.32 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=19.6
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~ 442 (633)
..++++++++||||||.. +-.++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 456899999999999974 334444543
No 460
>PRK09354 recA recombinase A; Provisional
Probab=79.73 E-value=8.7 Score=41.91 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=27.7
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~ 469 (633)
.|+-+.|.+|+|||||...+ .++...... +-.|+||..-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal-~~~~~~~~~----------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLAL-HAIAEAQKA----------GGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHHHHc----------CCcEEEECCccchHH
Confidence 46678899999999997543 333333222 124788876555543
No 461
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=79.51 E-value=7 Score=41.90 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=28.0
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEec
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSA 573 (633)
....+++|||+||.|... -.+.+.++++.-| +..+|++|.
T Consensus 122 ~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 457889999999998643 4566777777766 664554443
No 462
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=79.45 E-value=4.4 Score=40.61 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=32.5
Q ss_pred cEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHC
Q 006737 509 QILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562 (633)
Q Consensus 509 dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~l 562 (633)
-++|-.+..+.+.+.... ....+.+|.||||+-+.. ....++..+...+
T Consensus 61 A~~i~~~~~i~~~i~~~~----~~~~~~~v~IDEaQF~~~-~~v~~l~~lad~l 109 (201)
T COG1435 61 AVVIPSDTDIFDEIAALH----EKPPVDCVLIDEAQFFDE-ELVYVLNELADRL 109 (201)
T ss_pred ceecCChHHHHHHHHhcc----cCCCcCEEEEehhHhCCH-HHHHHHHHHHhhc
Confidence 577778888888886542 112388999999988654 3455555555554
No 463
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=79.28 E-value=2.2 Score=47.00 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=29.0
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Q 470 (633)
-...+++++.|.||||||.+ +-+++..+..... ++||.-|.-+....
T Consensus 12 ~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~g~----------~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 12 DSENRHILIIGATGSGKTQA-IRHLLDQIRARGD----------RAIIYDPKGEFTER 58 (386)
T ss_dssp GGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHTT-----------EEEEEEETTHHHHH
T ss_pred chhhCcEEEECCCCCCHHHH-HHHHHHHHHHcCC----------EEEEEECCchHHHH
Confidence 34567999999999999974 4567766655421 35555555555443
No 464
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=79.26 E-value=4.1 Score=50.44 Aligned_cols=151 Identities=19% Similarity=0.183 Sum_probs=83.7
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHHhcC--------CCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceE
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATS--------SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGV 487 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~~~~--------~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v 487 (633)
|++++..-.-|.|||.+-+.-.+....+... .......++ -+|||+|. ++..|...++..-... .++|
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tg-aTLII~P~-aIl~QW~~EI~kH~~~--~lKv 449 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETG-ATLIICPN-AILMQWFEEIHKHISS--LLKV 449 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecC-ceEEECcH-HHHHHHHHHHHHhccc--cceE
Confidence 5677777788999999866555443222110 000111112 37999996 5557777777666543 4678
Q ss_pred EEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhccc--Ccc---------c----ccCCee--EEEEecccccCCcC
Q 006737 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS--GLS---------V----RLMGLK--MLVLDEADHLLDLG 550 (633)
Q Consensus 488 ~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~--~~~---------~----~Ls~l~--~LVIDEAD~Lld~g 550 (633)
..+.|-........ ..-..+|||++|...|..-+.... +-. . .|-.+. -|+||||..+-.
T Consensus 450 ~~Y~Girk~~~~~~-~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves-- 526 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSP-FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES-- 526 (1394)
T ss_pred EEEechhhhcccCc-hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--
Confidence 77776432211111 111247999999999976553321 000 0 111122 389999988754
Q ss_pred hHHHHHHHHHHCCCCCcEEEEecc
Q 006737 551 FRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 551 f~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
-.....+++..++. .-.-++|.|
T Consensus 527 ssS~~a~M~~rL~~-in~W~VTGT 549 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLHA-INRWCVTGT 549 (1394)
T ss_pred hHHHHHHHHHHhhh-hceeeecCC
Confidence 34444455555543 225667777
No 465
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.14 E-value=9.3 Score=43.54 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=24.4
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEecc
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
....+++||||||.|.... .+.+...+...+... +++|.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a-~naLLk~LEepp~~~-v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEA-FNALLKTLEEPPPRT-IFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHH-HHHHHHHHhcCCCCe-EEEEEEC
Confidence 4567899999999886432 234444455444343 4444444
No 466
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=78.78 E-value=2.7 Score=40.20 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=33.8
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+.+-+++++||--.-+|......+..++..+...-.+++++..-...+
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 445678999999988888888888888876644344666655444433
No 467
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=78.77 E-value=1.7 Score=48.20 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=20.9
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
-...+++++.|+||||||.+ +..++..+..
T Consensus 39 ~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~ 68 (410)
T cd01127 39 DAEEAHTMIIGTTGTGKTTQ-IRELLASIRA 68 (410)
T ss_pred chhhccEEEEcCCCCCHHHH-HHHHHHHHHh
Confidence 34457999999999999985 3344444443
No 468
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=78.70 E-value=14 Score=41.64 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=23.6
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEE
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~Ilf 571 (633)
..-++|||||||.|... -.+.+.++++..+....+|+.
T Consensus 120 ~~~kvvIIdead~lt~~-~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE-AFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred CCCEEEEEecHHhhCHH-HHHHHHHHhhcCCCCceEEEE
Confidence 46678999999998643 234455555554444444443
No 469
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=78.62 E-value=2.7 Score=43.89 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhC--CCcEEEEccCCCCchhhhHHHHHHHH
Q 006737 404 RVQEATLSACLE--GKDAVVKAKTGTGKSIAFLLPAIEAV 441 (633)
Q Consensus 404 ~iQ~~aIp~il~--grDvLv~ApTGSGKTlaylLPiL~~l 441 (633)
+-|.+.|..++. +.-++++++||||||... ..++..+
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 344444444333 346899999999999843 2344444
No 470
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=78.61 E-value=4.9 Score=47.17 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=52.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.+++-|.+++... ...++|.|..|||||.+-.--+. ++.....- .+-.+|.|+=|+-.|.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria-~li~~~~v------~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIA-YLIAAGGV------DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHH-HHHHcCCc------ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999999876 55789999999999987444333 33333211 122488999999999999999998875
No 471
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=78.57 E-value=9 Score=41.13 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=49.9
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH-------HHHHhcCCCcEEEECchhhHHHHhcccCcc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD-------QRRLESDPCQILVATPGRLLDHIENKSGLS 529 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~-------~~~l~~~~~dILIaTPgrLl~lL~~~~~~~ 529 (633)
++||+++|+.-|..+++.+.+... ...+..++|+...... ...+..+...|||||. .+..+
T Consensus 224 ~~lVf~~t~~~~~~~~~~L~~~~~---~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~-----~~~~G---- 291 (358)
T TIGR01587 224 KIAIIVNTVDRAQEFYQQLKENAP---EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ-----VIEAS---- 291 (358)
T ss_pred eEEEEECCHHHHHHHHHHHHhhcC---CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc-----chhce----
Confidence 699999999999999888876532 3468889998765433 2344556778999995 23333
Q ss_pred cccCCeeEEEEe
Q 006737 530 VRLMGLKMLVLD 541 (633)
Q Consensus 530 ~~Ls~l~~LVID 541 (633)
+++ ++.++|.+
T Consensus 292 iDi-~~~~vi~~ 302 (358)
T TIGR01587 292 LDI-SADVMITE 302 (358)
T ss_pred ecc-CCCEEEEc
Confidence 445 35666654
No 472
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=78.50 E-value=14 Score=40.13 Aligned_cols=107 Identities=20% Similarity=0.264 Sum_probs=73.7
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCcc-chHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR-FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~-~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
+||.+|+.+.+.|+...++..+. ...+.+++.... ..+....+..+..+|||+|. +|+++ ..+.+++
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~---~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-----ILERG----VTfp~vd 375 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLP---KETIASVHSEDQHRKEKVEAFRDGKITLLITTT-----ILERG----VTFPNVD 375 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCC---ccceeeeeccCccHHHHHHHHHcCceEEEEEee-----hhhcc----cccccce
Confidence 89999999999999988866543 455566665543 34456778888899999993 55555 6688999
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCC-----CCcEEEEeccCChhh
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPR-----RRQSLLFSATMPKEL 579 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk-----~~Q~IlfSATl~~el 579 (633)
++||+--|.++. ...+.+|-....+ .--+++|-.-.+..+
T Consensus 376 V~Vlgaeh~vfT---esaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM 420 (441)
T COG4098 376 VFVLGAEHRVFT---ESALVQIAGRVGRSLERPTGDVLFFHYGKSKAM 420 (441)
T ss_pred EEEecCCccccc---HHHHHHHhhhccCCCcCCCCcEEEEeccchHHH
Confidence 999998888764 3455555544432 234566655555543
No 473
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=78.48 E-value=14 Score=44.97 Aligned_cols=73 Identities=14% Similarity=0.307 Sum_probs=53.5
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhc---CCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES---DPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~---~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
.+||.+|++.-+..+++.+.+... .++.+..++|+.+...+...+.. +...|||||. ..+.+ +.+.
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----IAErg----ItIp 279 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----IAETS----LTIE 279 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----hHhhc----cccc
Confidence 489999999999998888876432 36889999999988776665543 3468999994 33333 6677
Q ss_pred CeeEEEE
Q 006737 534 GLKMLVL 540 (633)
Q Consensus 534 ~l~~LVI 540 (633)
+|.+||=
T Consensus 280 ~V~~VID 286 (819)
T TIGR01970 280 GIRVVID 286 (819)
T ss_pred CceEEEE
Confidence 8875543
No 474
>PF14516 AAA_35: AAA-like domain
Probab=78.24 E-value=2.4 Score=45.71 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHhC-CCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 403 TRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 403 t~iQ~~aIp~il~-grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
.++...++..|.. |.-+.|.||-.+|||.. +.-+++++..
T Consensus 17 ~~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~ 57 (331)
T PF14516_consen 17 PPAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQ 57 (331)
T ss_pred hHHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHH
Confidence 3588999999888 99999999999999974 3344555544
No 475
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=78.20 E-value=11 Score=45.96 Aligned_cols=45 Identities=24% Similarity=0.236 Sum_probs=25.3
Q ss_pred eeEEEEecccccCCcCh---HHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 535 LKMLVLDEADHLLDLGF---RKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 535 l~~LVIDEAD~Lld~gf---~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
-.+|+|||+|.+...|- ......++...-....+.++-||-.++.
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence 45899999999985331 1122333332222345666677766653
No 476
>PRK10865 protein disaggregation chaperone; Provisional
Probab=78.17 E-value=11 Score=45.93 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.9
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
.++|+.||+|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 48999999999999853
No 477
>PRK07773 replicative DNA helicase; Validated
Probab=78.11 E-value=8.2 Score=47.23 Aligned_cols=140 Identities=15% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEE-ECC
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL-VGG 493 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l-~Gg 493 (633)
.|.=+++.|++|+|||.. .+-++.++..... ..++|++ .-.-..|+...+..... ++....+ .|.
T Consensus 216 ~G~livIagrPg~GKT~f-al~ia~~~a~~~~---------~~V~~fS-lEms~~ql~~R~~s~~~---~i~~~~i~~g~ 281 (886)
T PRK07773 216 PGQLIIVAARPSMGKTTF-GLDFARNCAIRHR---------LAVAIFS-LEMSKEQLVMRLLSAEA---KIKLSDMRSGR 281 (886)
T ss_pred CCcEEEEEeCCCCCcHHH-HHHHHHHHHHhcC---------CeEEEEe-cCCCHHHHHHHHHHHhc---CCCHHHHhcCC
Confidence 455578899999999964 4444444332211 1255553 44445566555544332 2211111 121
Q ss_pred ccchHHHH-------HHhcCCCcEEEE-----CchhhHHHHhcccCcccccCCeeEEEEecccccCCc----ChHHHHHH
Q 006737 494 TRFKVDQR-------RLESDPCQILVA-----TPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL----GFRKDVEN 557 (633)
Q Consensus 494 ~~~~~~~~-------~l~~~~~dILIa-----TPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~----gf~~~l~~ 557 (633)
.. ..+.. .+.. ..|.|. |+..|...+..- ..-..+++||||=.+.|... .....+..
T Consensus 282 l~-~~~~~~~~~a~~~l~~--~~i~i~d~~~~~i~~i~~~~r~~----~~~~~~~lvvIDyLql~~~~~~~~~r~~ei~~ 354 (886)
T PRK07773 282 MS-DDDWTRLARAMGEISE--APIFIDDTPNLTVMEIRAKARRL----RQEANLGLIVVDYLQLMTSGKKYENRQQEVSE 354 (886)
T ss_pred CC-HHHHHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHH----HHhcCCCEEEEcchhhcCCCCCCCCHHHHHHH
Confidence 11 11211 2222 245552 333333322221 11236889999999988532 12234444
Q ss_pred HHHHCC-----CCCcEEEEeccC
Q 006737 558 IVDCLP-----RRRQSLLFSATM 575 (633)
Q Consensus 558 Il~~lp-----k~~Q~IlfSATl 575 (633)
|...|. -++.+|++|-.-
T Consensus 355 isr~LK~lAkel~vpvi~lsQLn 377 (886)
T PRK07773 355 ISRHLKLLAKELEVPVVALSQLS 377 (886)
T ss_pred HHHHHHHHHHHHCCcEEEecccC
Confidence 444332 257777776543
No 478
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=77.92 E-value=6.6 Score=45.08 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=31.8
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEecc
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
+.+-+++|+||+-.-+|......+...+..+.+++-+|+.|=.
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~ 527 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR 527 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 5566789999999999888888888777766555545555443
No 479
>PRK13767 ATP-dependent helicase; Provisional
Probab=77.87 E-value=12 Score=45.89 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=53.9
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhc-CCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKN-HDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~-~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
++||.|+||..|..++..+...+.. ..+..+...+|+.+..... +.++++..+|||||.- +..+ +++
T Consensus 286 ~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-----Le~G----IDi 356 (876)
T PRK13767 286 TTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-----LELG----IDI 356 (876)
T ss_pred CEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----HHhc----CCC
Confidence 4899999999999999888775432 1245688889987755432 4566778899999952 2222 566
Q ss_pred CCeeEEEEec
Q 006737 533 MGLKMLVLDE 542 (633)
Q Consensus 533 s~l~~LVIDE 542 (633)
..+++||.-.
T Consensus 357 p~Vd~VI~~~ 366 (876)
T PRK13767 357 GYIDLVVLLG 366 (876)
T ss_pred CCCcEEEEeC
Confidence 6777777543
No 480
>CHL00176 ftsH cell division protein; Validated
Probab=77.87 E-value=12 Score=44.19 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=27.0
Q ss_pred eeEEEEecccccCCc-------C---hHHHHHHHHHHC---CCCCcEEEEeccCChh
Q 006737 535 LKMLVLDEADHLLDL-------G---FRKDVENIVDCL---PRRRQSLLFSATMPKE 578 (633)
Q Consensus 535 l~~LVIDEAD~Lld~-------g---f~~~l~~Il~~l---pk~~Q~IlfSATl~~e 578 (633)
-.+|+|||+|.+... + ....+..++..+ ..+..++++.||-..+
T Consensus 276 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~ 332 (638)
T CHL00176 276 PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVD 332 (638)
T ss_pred CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchH
Confidence 357999999998521 1 233455555444 2345677777776644
No 481
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=77.85 E-value=13 Score=44.51 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
.++|+.||+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 48999999999999853
No 482
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=77.74 E-value=16 Score=36.24 Aligned_cols=47 Identities=23% Similarity=0.222 Sum_probs=34.0
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHC-CC--CCcEEEEeccCChhh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCL-PR--RRQSLLFSATMPKEL 579 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~l-pk--~~Q~IlfSATl~~el 579 (633)
.+-+++|+||...-++......+..++..+ .. ..++|++|.--...+
T Consensus 130 ~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i 179 (198)
T cd03276 130 MESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGL 179 (198)
T ss_pred cCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc
Confidence 577899999999999887777777766554 22 457888876554444
No 483
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=77.69 E-value=10 Score=43.37 Aligned_cols=107 Identities=18% Similarity=0.301 Sum_probs=80.3
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
-++||++=|+-.|.++.+.+.++ ++++..++++...-+.. ..+..+..||||+ .++|..+ +++
T Consensus 447 eRvLVTtLTKkmAEdLT~Yl~e~-----gikv~YlHSdidTlER~eIirdLR~G~~DvLVG-----INLLREG----LDi 512 (663)
T COG0556 447 ERVLVTTLTKKMAEDLTEYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG-----INLLREG----LDL 512 (663)
T ss_pred CeEEEEeehHHHHHHHHHHHHhc-----CceEEeeeccchHHHHHHHHHHHhcCCccEEEe-----ehhhhcc----CCC
Confidence 47999999999998887777666 89999999998766543 4556678999999 4677665 788
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHC-----CCCCcEEEEeccCChhh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCL-----PRRRQSLLFSATMPKEL 579 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~l-----pk~~Q~IlfSATl~~el 579 (633)
..+.+|.|=+||. .||...-..+++.+ +-+-.+|+..-.++..+
T Consensus 513 PEVsLVAIlDADK---eGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM 561 (663)
T COG0556 513 PEVSLVAILDADK---EGFLRSERSLIQTIGRAARNVNGKVILYADKITDSM 561 (663)
T ss_pred cceeEEEEeecCc---cccccccchHHHHHHHHhhccCCeEEEEchhhhHHH
Confidence 9999998888997 45554444444333 23567888888888874
No 484
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=77.56 E-value=4.1 Score=51.18 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=46.5
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhc
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~ 481 (633)
.+.+++|.|..|||||.+-..=++..++... +...-..|||+-|+..+..+..++..-+..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~------~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG------PLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC------CCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 4679999999999999986666666666642 112235899999999999998888766643
No 485
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=77.43 E-value=2.1 Score=50.54 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=33.7
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHH
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAE 474 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~ 474 (633)
.++++.||||||||..+++|-|-.. . . -+||+-|--|+.......
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~--~-~----------S~VV~D~KGEl~~~Ta~~ 189 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW--P-G----------SAIVHDIKGENWQLTAGF 189 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC--C-C----------CEEEEeCcchHHHHHHHH
Confidence 5899999999999999999986432 1 1 277888888876655443
No 486
>PRK05595 replicative DNA helicase; Provisional
Probab=77.13 E-value=8.9 Score=43.02 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=25.3
Q ss_pred CCeeEEEEecccccCCcC----hHHHHHHHHHHC---C--CCCcEEEEecc
Q 006737 533 MGLKMLVLDEADHLLDLG----FRKDVENIVDCL---P--RRRQSLLFSAT 574 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~g----f~~~l~~Il~~l---p--k~~Q~IlfSAT 574 (633)
..+++||||=.+.|...+ ....+..|...+ - -++.+|++|-.
T Consensus 310 ~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i~vi~lsQL 360 (444)
T PRK05595 310 HGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIALSQL 360 (444)
T ss_pred cCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCCeEEEeecc
Confidence 358899999999886322 223444443333 2 25777777644
No 487
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=77.13 E-value=1.5 Score=42.66 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=19.1
Q ss_pred CCeeEEEEecccccCC--cChHHHHHHHHH
Q 006737 533 MGLKMLVLDEADHLLD--LGFRKDVENIVD 560 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld--~gf~~~l~~Il~ 560 (633)
..-+++||||+=.|-- .+|...+..+++
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 4667999999987753 448888888887
No 488
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=77.11 E-value=1.3 Score=42.86 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=25.5
Q ss_pred CCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCc
Q 006737 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549 (633)
Q Consensus 507 ~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~ 549 (633)
.++|||++-.-|++-........+.+ .-.+|||||||.|.+.
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~~-~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGIDL-KDNIVIFDEAHNLEDA 160 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT--C-CCEEEEETTGGGCGGG
T ss_pred cCCEEEeCHHHHhhHHHHhhhccccc-cCcEEEEecccchHHH
Confidence 37999999877765432221001222 3468999999998753
No 489
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=77.10 E-value=5.1 Score=47.33 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=32.0
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.-++|.|..|+|||.+ |-.| ... +.+||+.||+-.|+.+...+.
T Consensus 72 s~~~itG~AGsGKst~--i~~l---~~~-----------l~cvitg~T~vAAqN~~~~L~ 115 (828)
T PHA03311 72 SVYLITGTAGAGKSTS--IQTL---NEN-----------LDCVITGATRVAAQNLSAKLS 115 (828)
T ss_pred EEEEEecCCCCChHHH--HHHH---HHh-----------cCEEEEcchHHHHHhhhcccc
Confidence 4678999999999984 3233 222 138999999999998876443
No 490
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=76.98 E-value=3.8 Score=48.23 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=36.5
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHH--HHHHHHHHHHHHH
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE--LASQIAAEAIALL 479 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTRe--La~Qi~~~l~~l~ 479 (633)
..+++|.|+||+|||..+.+-+.+.+... ..++|+=|-.. |...+...++..+
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~g-----------~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRRG-----------DVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 46899999999999987654444444321 24788888764 7777766666654
No 491
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=76.98 E-value=6.6 Score=45.93 Aligned_cols=70 Identities=23% Similarity=0.284 Sum_probs=51.0
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
.+||.++|+.-|.+++..+... ++.+..++++.+..... ..+..+..+|||||. .+.. .+++.
T Consensus 238 ~~IIFc~tr~~~e~la~~L~~~-----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~-----a~~~----GIDip 303 (607)
T PRK11057 238 SGIIYCNSRAKVEDTAARLQSR-----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV-----AFGM----GINKP 303 (607)
T ss_pred CEEEEECcHHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec-----hhhc----cCCCC
Confidence 4899999999999998887754 78889999987755433 344556789999994 2222 25666
Q ss_pred CeeEEEE
Q 006737 534 GLKMLVL 540 (633)
Q Consensus 534 ~l~~LVI 540 (633)
++++||.
T Consensus 304 ~V~~VI~ 310 (607)
T PRK11057 304 NVRFVVH 310 (607)
T ss_pred CcCEEEE
Confidence 7776664
No 492
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.75 E-value=19 Score=42.38 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=28.3
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHH---hCCCcEEEEccCCCCchhhh
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSAC---LEGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~i---l~grDvLv~ApTGSGKTlay 433 (633)
+.++++-.++..++.+... +-+.. ..++-+++.||+|+|||.+.
T Consensus 81 ~~ldel~~~~~ki~~l~~~-----------l~~~~~~~~~~~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETW-----------LKAQVLENAPKRILLITGPSGCGKSTTI 127 (637)
T ss_pred CCHHHhcCcHHHHHHHHHH-----------HHhcccccCCCcEEEEECCCCCCHHHHH
Confidence 4577787777777665432 11111 12344899999999999854
No 493
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=76.62 E-value=40 Score=39.77 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=66.1
Q ss_pred CeEEEEEcccHHH--------HHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHh
Q 006737 455 PIYVLILCPTREL--------ASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIE 523 (633)
Q Consensus 455 ~~~vLILvPTReL--------a~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~ 523 (633)
+-+|.||||..+- |..+++.+. ..+++.++.+++|..+..+. ...++.+..+|+|+|.-. +
T Consensus 473 GrQaY~VcPLIeESE~l~l~~a~~~~~~L~---~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI-----E 544 (677)
T COG1200 473 GRQAYVVCPLIEESEKLELQAAEELYEELK---SFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI-----E 544 (677)
T ss_pred CCEEEEEeccccccccchhhhHHHHHHHHH---HHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE-----E
Confidence 4579999999863 334444444 44568899999998775432 356667789999999421 1
Q ss_pred cccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCCC
Q 006737 524 NKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPR 564 (633)
Q Consensus 524 ~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk 564 (633)
..++..+-.++||..|+++. ..++.++.....+
T Consensus 545 ----VGVdVPnATvMVIe~AERFG----LaQLHQLRGRVGR 577 (677)
T COG1200 545 ----VGVDVPNATVMVIENAERFG----LAQLHQLRGRVGR 577 (677)
T ss_pred ----ecccCCCCeEEEEechhhhh----HHHHHHhccccCC
Confidence 23678888999999999975 4477777666554
No 494
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=76.58 E-value=3.1 Score=44.32 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=17.3
Q ss_pred HhCCCcEEEEccCCCCchhh
Q 006737 413 CLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTla 432 (633)
+..+.+++++++||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 44678999999999999983
No 495
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.57 E-value=17 Score=42.73 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=28.5
Q ss_pred ccCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 531 RLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 531 ~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
.....++|||||||.|... -...+..+++..|... +++|.+|-..
T Consensus 118 ~~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~t-ifIL~tt~~~ 162 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYA-IFILATTEKH 162 (614)
T ss_pred ccCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCe-EEEEEeCCch
Confidence 3567789999999999753 3445556666655444 4445555433
No 496
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=76.56 E-value=11 Score=37.48 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=30.9
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEecc
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
..-.++++||...-++......+..++..+....++|+.|--
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~ 175 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHR 175 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECC
Confidence 345789999999988887788888888877655555554433
No 497
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.25 E-value=4 Score=39.32 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=34.9
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
..+-+++++||--.-+|......+..++..+.....+++++..-...+
T Consensus 111 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~ 158 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEA 158 (173)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence 456789999999999998888888888887754434555555444443
No 498
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=76.19 E-value=3 Score=34.06 Aligned_cols=26 Identities=42% Similarity=0.654 Sum_probs=19.2
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
|...++.+++|+|||. ++=+++.++-
T Consensus 23 g~~tli~G~nGsGKST--llDAi~~~L~ 48 (62)
T PF13555_consen 23 GDVTLITGPNGSGKST--LLDAIQTVLY 48 (62)
T ss_pred CcEEEEECCCCCCHHH--HHHHHHHHHc
Confidence 4578999999999998 4555555443
No 499
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=76.02 E-value=36 Score=34.57 Aligned_cols=61 Identities=25% Similarity=0.264 Sum_probs=30.6
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHHHhcCCCC--CCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSST--TQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~--~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
-.++.|+.|+|||...+--++ .+.....-.. .....+.+|||+. .-+-..++.+++..+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~-~va~G~~~~g~~~~~~~~~~Vlyi~-~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL-AMALGKNLFGGGLKVTEPGRVVYLS-AEDPREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH-HHhcCccccCCccccCCCceEEEEE-CCCCHHHHHHHHHHHHh
Confidence 358899999999975433222 2322211000 0112234687877 22223344555555554
No 500
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=75.94 E-value=23 Score=33.86 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=12.9
Q ss_pred EEEEccCCCCchhhh
Q 006737 419 AVVKAKTGTGKSIAF 433 (633)
Q Consensus 419 vLv~ApTGSGKTlay 433 (633)
+++.+++|+|||...
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 578899999999853
Done!