Query 006737
Match_columns 633
No_of_seqs 450 out of 2781
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 07:37:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3E-35 1E-39 321.4 26.7 245 377-631 54-311 (434)
2 3fmo_B ATP-dependent RNA helic 100.0 7.5E-36 2.6E-40 311.8 19.2 198 369-580 82-282 (300)
3 3fe2_A Probable ATP-dependent 100.0 3.7E-34 1.3E-38 288.2 20.9 195 377-579 27-221 (242)
4 1vec_A ATP-dependent RNA helic 100.0 4.1E-33 1.4E-37 272.0 20.7 190 379-580 3-192 (206)
5 3iuy_A Probable ATP-dependent 100.0 3.2E-33 1.1E-37 278.0 19.1 196 377-580 17-213 (228)
6 2i4i_A ATP-dependent RNA helic 100.0 1.9E-32 6.4E-37 293.7 25.3 247 378-631 14-287 (417)
7 2oxc_A Probable ATP-dependent 100.0 7E-33 2.4E-37 276.7 19.5 189 378-579 23-212 (230)
8 3fmp_B ATP-dependent RNA helic 100.0 3.8E-33 1.3E-37 307.1 18.7 246 370-631 83-344 (479)
9 3ly5_A ATP-dependent RNA helic 100.0 9.5E-33 3.2E-37 282.2 19.8 196 377-580 50-247 (262)
10 1wrb_A DJVLGB; RNA helicase, D 100.0 5.9E-33 2E-37 280.6 17.7 198 377-579 21-223 (253)
11 2pl3_A Probable ATP-dependent 100.0 2.1E-32 7.1E-37 273.5 21.1 194 377-579 23-216 (236)
12 1q0u_A Bstdead; DEAD protein, 100.0 4E-33 1.4E-37 275.9 15.6 191 378-580 3-196 (219)
13 3bor_A Human initiation factor 100.0 5.7E-33 1.9E-37 278.9 16.8 190 378-579 29-218 (237)
14 2j0s_A ATP-dependent RNA helic 100.0 2.6E-32 8.8E-37 292.8 22.8 240 377-631 35-287 (410)
15 3ber_A Probable ATP-dependent 100.0 1.5E-32 5E-37 278.8 19.7 191 377-579 41-231 (249)
16 1t6n_A Probable ATP-dependent 100.0 2.3E-32 7.7E-37 270.1 18.6 191 378-579 13-204 (220)
17 1qde_A EIF4A, translation init 100.0 4.3E-32 1.5E-36 268.4 18.8 188 378-579 13-200 (224)
18 2gxq_A Heat resistant RNA depe 100.0 6.2E-32 2.1E-36 263.5 18.6 188 380-579 2-189 (207)
19 3fht_A ATP-dependent RNA helic 100.0 2.2E-31 7.4E-36 284.3 23.6 246 370-631 16-277 (412)
20 1xti_A Probable ATP-dependent 100.0 1.6E-31 5.5E-36 283.7 22.3 242 378-631 7-261 (391)
21 3eiq_A Eukaryotic initiation f 100.0 2.9E-31 9.9E-36 283.8 23.1 240 378-631 39-291 (414)
22 3sqw_A ATP-dependent RNA helic 100.0 2.4E-31 8.3E-36 300.4 21.9 240 386-631 28-299 (579)
23 3i5x_A ATP-dependent RNA helic 100.0 2.7E-31 9.2E-36 297.8 21.9 240 386-631 79-350 (563)
24 3dkp_A Probable ATP-dependent 100.0 8.3E-32 2.8E-36 270.6 15.6 194 378-580 24-225 (245)
25 1s2m_A Putative ATP-dependent 100.0 7.5E-31 2.6E-35 280.1 20.9 238 378-631 20-269 (400)
26 1fuu_A Yeast initiation factor 100.0 7.1E-31 2.4E-35 278.6 17.8 239 378-632 20-271 (394)
27 1hv8_A Putative ATP-dependent 100.0 2.2E-30 7.7E-35 271.3 20.2 233 378-631 5-249 (367)
28 3pey_A ATP-dependent RNA helic 100.0 4.2E-30 1.4E-34 271.9 21.1 235 378-631 4-254 (395)
29 2z0m_A 337AA long hypothetical 100.0 9.8E-30 3.3E-34 263.8 20.4 221 386-631 1-231 (337)
30 3oiy_A Reverse gyrase helicase 100.0 4.3E-29 1.5E-33 269.2 12.7 222 389-631 9-263 (414)
31 3l9o_A ATP-dependent RNA helic 99.9 2E-28 7E-33 295.1 13.2 172 380-578 163-334 (1108)
32 2v1x_A ATP-dependent DNA helic 99.9 1.4E-26 4.8E-31 263.0 18.6 177 380-579 22-214 (591)
33 2zj8_A DNA helicase, putative 99.9 1.7E-26 5.7E-31 267.4 18.1 180 380-578 2-182 (720)
34 3fho_A ATP-dependent RNA helic 99.9 6.1E-27 2.1E-31 260.9 13.5 233 381-632 121-369 (508)
35 4ddu_A Reverse gyrase; topoiso 99.9 1E-26 3.6E-31 280.2 16.5 214 397-631 75-320 (1104)
36 2va8_A SSO2462, SKI2-type heli 99.9 4E-26 1.4E-30 263.8 19.0 180 379-578 8-188 (715)
37 1oyw_A RECQ helicase, ATP-depe 99.9 1.9E-26 6.6E-31 258.2 13.0 178 379-579 2-188 (523)
38 2p6r_A Afuhel308 helicase; pro 99.9 1.4E-26 4.7E-31 267.4 12.0 179 380-578 2-185 (702)
39 4f92_B U5 small nuclear ribonu 99.9 2.4E-24 8.3E-29 268.6 19.3 227 398-631 76-328 (1724)
40 1gku_B Reverse gyrase, TOP-RG; 99.9 1.2E-24 4.3E-29 261.5 15.1 209 396-631 53-286 (1054)
41 4f92_B U5 small nuclear ribonu 99.9 7.3E-24 2.5E-28 264.2 22.0 180 386-580 911-1098(1724)
42 2xgj_A ATP-dependent RNA helic 99.9 5.6E-24 1.9E-28 254.5 18.8 155 397-579 83-237 (1010)
43 4a4z_A Antiviral helicase SKI2 99.9 6.4E-24 2.2E-28 253.8 15.4 156 397-578 36-191 (997)
44 1tf5_A Preprotein translocase 99.9 9.2E-24 3.1E-28 244.1 13.8 164 396-577 79-288 (844)
45 4a2p_A RIG-I, retinoic acid in 99.9 3.3E-23 1.1E-27 229.8 17.4 170 397-577 3-178 (556)
46 3tbk_A RIG-I helicase domain; 99.9 7.7E-23 2.6E-27 226.1 17.6 166 401-577 4-176 (555)
47 2ykg_A Probable ATP-dependent 99.9 9.4E-23 3.2E-27 233.9 18.4 175 391-576 3-184 (696)
48 3b6e_A Interferon-induced heli 99.9 4.3E-23 1.5E-27 201.2 11.3 170 397-574 29-216 (216)
49 3llm_A ATP-dependent RNA helic 99.9 2.8E-22 9.7E-27 201.1 14.3 173 388-579 48-222 (235)
50 4a2q_A RIG-I, retinoic acid in 99.9 6.2E-22 2.1E-26 231.8 18.3 169 397-576 244-418 (797)
51 1gm5_A RECG; helicase, replica 99.9 2E-21 6.8E-26 226.5 15.7 165 388-578 356-529 (780)
52 2jlq_A Serine protease subunit 99.8 1.7E-21 5.7E-26 214.1 11.7 153 398-579 1-155 (451)
53 4a2w_A RIG-I, retinoic acid in 99.8 5.4E-21 1.8E-25 227.7 15.4 170 397-576 244-418 (936)
54 2fsf_A Preprotein translocase 99.8 3.5E-21 1.2E-25 222.3 11.9 150 397-564 71-240 (853)
55 1nkt_A Preprotein translocase 99.8 7.5E-21 2.6E-25 219.9 13.7 163 397-577 108-316 (922)
56 2whx_A Serine protease/ntpase/ 99.8 1.2E-21 4.2E-26 223.5 6.9 171 381-580 151-323 (618)
57 4gl2_A Interferon-induced heli 99.8 5.1E-21 1.8E-25 219.6 10.1 169 401-577 7-193 (699)
58 1rif_A DAR protein, DNA helica 99.8 1.7E-20 5.9E-25 192.7 12.3 153 401-578 113-265 (282)
59 1wp9_A ATP-dependent RNA helic 99.8 1E-19 3.6E-24 195.5 18.7 160 401-577 9-168 (494)
60 2eyq_A TRCF, transcription-rep 99.8 1.7E-19 5.7E-24 218.6 22.4 169 384-578 586-764 (1151)
61 3o8b_A HCV NS3 protease/helica 99.8 8.5E-21 2.9E-25 216.8 8.2 147 401-580 217-365 (666)
62 2xau_A PRE-mRNA-splicing facto 99.8 4.9E-19 1.7E-23 206.7 19.6 228 378-631 71-314 (773)
63 2oca_A DAR protein, ATP-depend 99.8 9.9E-20 3.4E-24 201.5 11.6 155 399-578 111-265 (510)
64 2wv9_A Flavivirin protease NS2 99.8 8.7E-21 3E-25 218.2 0.8 154 394-580 203-378 (673)
65 1yks_A Genome polyprotein [con 99.8 1E-19 3.6E-24 199.4 6.9 134 412-579 4-144 (440)
66 2z83_A Helicase/nucleoside tri 99.8 4.1E-19 1.4E-23 195.6 9.9 139 410-580 15-158 (459)
67 2v6i_A RNA helicase; membrane, 99.7 4.7E-18 1.6E-22 185.7 14.0 138 415-580 1-139 (431)
68 2fwr_A DNA repair protein RAD2 99.7 7.8E-18 2.7E-22 184.5 15.3 137 400-576 92-229 (472)
69 2fz4_A DNA repair protein RAD2 99.7 1.6E-17 5.3E-22 167.5 15.5 139 400-578 92-231 (237)
70 2ipc_A Preprotein translocase 99.7 1.3E-17 4.3E-22 192.7 11.5 133 397-547 76-215 (997)
71 3h1t_A Type I site-specific re 99.6 5.2E-16 1.8E-20 175.3 9.5 160 400-577 177-343 (590)
72 3rc3_A ATP-dependent RNA helic 99.6 6.6E-16 2.2E-20 177.6 7.2 138 406-577 145-283 (677)
73 2w00_A HSDR, R.ECOR124I; ATP-b 99.6 2.6E-15 8.9E-20 179.6 12.2 156 401-577 271-440 (1038)
74 3crv_A XPD/RAD3 related DNA he 99.5 9.2E-15 3.2E-19 164.4 8.8 131 401-548 3-187 (551)
75 2vl7_A XPD; helicase, unknown 99.4 1.5E-13 5E-18 154.4 8.3 132 397-548 4-189 (540)
76 1z63_A Helicase of the SNF2/RA 99.4 6.4E-13 2.2E-17 146.5 11.0 150 400-577 36-189 (500)
77 3dmq_A RNA polymerase-associat 99.3 2.7E-12 9.3E-17 153.4 9.5 161 400-576 152-317 (968)
78 3mwy_W Chromo domain-containin 99.2 5.6E-11 1.9E-15 139.3 12.2 156 400-575 235-405 (800)
79 4a15_A XPD helicase, ATP-depen 99.2 2.5E-11 8.5E-16 138.6 8.1 83 401-494 3-89 (620)
80 1z3i_X Similar to RAD54-like; 99.1 5.5E-10 1.9E-14 127.9 17.4 161 401-576 55-231 (644)
81 3jux_A Protein translocase sub 98.9 1E-08 3.5E-13 117.3 13.9 133 397-547 72-258 (822)
82 1w36_D RECD, exodeoxyribonucle 98.7 1.9E-08 6.6E-13 114.5 10.5 145 403-573 151-297 (608)
83 2gk6_A Regulator of nonsense t 97.8 0.00012 4.2E-09 83.3 14.2 70 399-478 178-247 (624)
84 3e1s_A Exodeoxyribonuclease V, 97.8 8.2E-05 2.8E-09 84.1 12.1 125 401-572 189-313 (574)
85 3upu_A ATP-dependent DNA helic 97.8 5.7E-05 1.9E-09 82.7 10.4 138 395-572 19-162 (459)
86 4b3f_X DNA-binding protein smu 97.7 9.6E-05 3.3E-09 84.4 10.0 67 401-478 189-256 (646)
87 2xzl_A ATP-dependent helicase 97.7 0.00027 9.2E-09 82.9 13.8 70 399-478 358-427 (802)
88 2wjy_A Regulator of nonsense t 97.6 0.00023 7.9E-09 83.4 12.6 70 399-478 354-423 (800)
89 3lfu_A DNA helicase II; SF1 he 97.0 0.0041 1.4E-07 70.3 13.0 72 400-480 8-79 (647)
90 3ec2_A DNA replication protein 96.8 0.0053 1.8E-07 57.7 10.4 18 415-432 37-54 (180)
91 2o0j_A Terminase, DNA packagin 96.6 0.0085 2.9E-07 64.3 11.3 74 401-483 163-236 (385)
92 3cpe_A Terminase, DNA packagin 96.5 0.025 8.4E-07 63.9 14.5 74 401-483 163-236 (592)
93 1c4o_A DNA nucleotide excision 96.3 0.0065 2.2E-07 69.7 8.7 68 398-480 6-78 (664)
94 2kjq_A DNAA-related protein; s 96.0 0.0051 1.8E-07 56.9 4.5 44 534-578 83-127 (149)
95 3vkw_A Replicase large subunit 95.4 0.012 4.3E-07 64.1 5.4 43 417-475 162-204 (446)
96 1l8q_A Chromosomal replication 95.3 0.061 2.1E-06 55.3 9.8 43 535-578 99-143 (324)
97 1uaa_A REP helicase, protein ( 95.2 0.023 8E-07 64.8 7.1 81 401-490 2-84 (673)
98 2b8t_A Thymidine kinase; deoxy 95.0 0.011 3.8E-07 58.7 3.2 113 415-572 11-123 (223)
99 3te6_A Regulatory protein SIR3 95.0 0.13 4.5E-06 53.6 11.5 26 416-442 45-70 (318)
100 2orw_A Thymidine kinase; TMTK, 94.9 0.083 2.8E-06 50.4 8.9 39 416-465 3-41 (184)
101 3bos_A Putative DNA replicatio 94.7 0.033 1.1E-06 53.7 5.7 18 415-432 51-68 (242)
102 1pjr_A PCRA; DNA repair, DNA r 94.7 0.053 1.8E-06 62.6 8.2 82 400-490 10-92 (724)
103 1xx6_A Thymidine kinase; NESG, 94.4 0.094 3.2E-06 50.6 8.1 39 416-465 8-46 (191)
104 3syl_A Protein CBBX; photosynt 94.4 0.15 5.1E-06 51.6 9.9 18 416-433 67-84 (309)
105 2z4s_A Chromosomal replication 94.3 0.16 5.3E-06 55.2 10.5 41 534-575 194-236 (440)
106 1d2n_A N-ethylmaleimide-sensit 94.3 0.13 4.6E-06 51.3 9.2 45 534-578 124-178 (272)
107 3h4m_A Proteasome-activating n 94.2 0.053 1.8E-06 54.4 5.9 52 379-432 14-67 (285)
108 2d7d_A Uvrabc system protein B 94.0 0.13 4.5E-06 58.8 9.5 66 401-480 12-82 (661)
109 3u4q_A ATP-dependent helicase/ 93.9 0.07 2.4E-06 65.4 7.3 73 400-479 9-81 (1232)
110 2chg_A Replication factor C sm 93.8 0.72 2.4E-05 43.0 12.8 39 533-572 101-139 (226)
111 3u61_B DNA polymerase accessor 93.5 0.28 9.7E-06 50.1 10.0 39 534-572 105-143 (324)
112 3eie_A Vacuolar protein sortin 93.4 0.63 2.2E-05 47.8 12.6 49 378-432 14-67 (322)
113 2zpa_A Uncharacterized protein 93.2 0.094 3.2E-06 60.0 6.4 115 401-578 175-291 (671)
114 2j9r_A Thymidine kinase; TK1, 93.2 0.17 5.8E-06 49.9 7.4 40 416-466 28-67 (214)
115 2qby_B CDC6 homolog 3, cell di 93.2 0.24 8E-06 51.5 9.0 17 416-432 45-61 (384)
116 1xwi_A SKD1 protein; VPS4B, AA 93.1 0.44 1.5E-05 49.3 10.8 49 378-432 8-61 (322)
117 1w4r_A Thymidine kinase; type 93.0 0.19 6.3E-06 48.9 7.3 38 416-464 20-57 (195)
118 1jbk_A CLPB protein; beta barr 92.9 1.6 5.6E-05 39.5 13.5 17 416-432 43-59 (195)
119 2dr3_A UPF0273 protein PH0284; 92.9 0.26 8.9E-06 47.7 8.3 19 414-432 21-39 (247)
120 2v1u_A Cell division control p 92.9 0.29 9.8E-06 50.6 9.0 18 415-432 43-60 (387)
121 1fnn_A CDC6P, cell division co 92.8 0.2 6.8E-06 52.0 7.8 15 418-432 46-60 (389)
122 2w58_A DNAI, primosome compone 92.7 0.41 1.4E-05 45.2 9.2 16 417-432 55-70 (202)
123 3cf0_A Transitional endoplasmi 92.5 0.33 1.1E-05 49.6 8.7 52 378-432 11-65 (301)
124 1njg_A DNA polymerase III subu 92.3 1.9 6.5E-05 40.4 13.5 38 534-572 126-163 (250)
125 2hjv_A ATP-dependent RNA helic 92.3 0.64 2.2E-05 42.7 9.7 72 457-542 37-111 (163)
126 1a5t_A Delta prime, HOLB; zinc 92.2 0.68 2.3E-05 47.9 10.8 31 403-433 4-41 (334)
127 3kl4_A SRP54, signal recogniti 92.0 0.58 2E-05 50.8 10.3 46 533-578 178-226 (433)
128 1sxj_E Activator 1 40 kDa subu 91.9 0.37 1.3E-05 49.7 8.3 41 533-574 133-173 (354)
129 2rb4_A ATP-dependent RNA helic 91.8 0.5 1.7E-05 43.9 8.5 73 456-542 35-110 (175)
130 2p65_A Hypothetical protein PF 91.8 0.48 1.6E-05 43.2 8.2 17 416-432 43-59 (187)
131 2p6n_A ATP-dependent RNA helic 91.6 1.2 4.1E-05 42.4 11.0 71 457-541 56-129 (191)
132 2qgz_A Helicase loader, putati 91.6 0.26 8.9E-06 50.8 6.7 18 416-433 152-169 (308)
133 2qp9_X Vacuolar protein sortin 91.5 0.41 1.4E-05 50.2 8.3 18 416-433 84-101 (355)
134 2qz4_A Paraplegin; AAA+, SPG7, 91.2 2.1 7.3E-05 41.6 12.8 51 379-432 3-55 (262)
135 3eaq_A Heat resistant RNA depe 91.2 0.94 3.2E-05 43.7 10.0 70 457-540 33-105 (212)
136 2w0m_A SSO2452; RECA, SSPF, un 91.2 0.42 1.4E-05 45.6 7.4 18 415-432 22-39 (235)
137 2qby_A CDC6 homolog 1, cell di 91.0 1.5 5.1E-05 45.0 11.9 17 416-432 45-61 (386)
138 2r6a_A DNAB helicase, replicat 90.9 0.4 1.4E-05 52.0 7.8 28 414-442 201-228 (454)
139 4b4t_J 26S protease regulatory 90.9 0.57 1.9E-05 50.5 8.7 52 378-432 144-198 (405)
140 1fuk_A Eukaryotic initiation f 90.9 1 3.5E-05 41.3 9.5 72 457-542 32-106 (165)
141 1iqp_A RFCS; clamp loader, ext 90.5 1.6 5.3E-05 43.9 11.2 38 533-571 109-146 (327)
142 2q6t_A DNAB replication FORK h 90.3 0.43 1.5E-05 51.6 7.3 28 414-442 198-225 (444)
143 3vfd_A Spastin; ATPase, microt 90.2 0.87 3E-05 48.1 9.4 44 379-432 112-164 (389)
144 3hu3_A Transitional endoplasmi 90.1 0.68 2.3E-05 51.0 8.7 43 536-578 299-351 (489)
145 4b4t_H 26S protease regulatory 90.1 0.72 2.5E-05 50.5 8.7 52 378-432 205-259 (467)
146 1sxj_D Activator 1 41 kDa subu 89.9 0.65 2.2E-05 47.5 7.9 38 534-572 133-170 (353)
147 2orv_A Thymidine kinase; TP4A 89.9 0.67 2.3E-05 46.2 7.6 40 415-465 18-57 (234)
148 3b9p_A CG5977-PA, isoform A; A 89.5 0.8 2.7E-05 46.0 8.1 48 379-432 18-70 (297)
149 1sxj_A Activator 1 95 kDa subu 89.5 2 6.9E-05 47.3 11.9 41 534-576 148-190 (516)
150 4b4t_M 26S protease regulatory 89.4 0.29 9.8E-06 53.3 4.9 52 378-432 177-231 (434)
151 1t5i_A C_terminal domain of A 89.2 1.2 4E-05 41.5 8.4 72 457-542 33-107 (172)
152 3pfi_A Holliday junction ATP-d 89.1 0.7 2.4E-05 47.3 7.4 16 417-432 56-71 (338)
153 3e2i_A Thymidine kinase; Zn-bi 88.9 0.34 1.2E-05 47.9 4.6 99 415-559 27-125 (219)
154 4b4t_L 26S protease subunit RP 88.8 0.63 2.2E-05 50.6 7.1 52 378-432 177-231 (437)
155 1jr3_A DNA polymerase III subu 88.8 2.6 9E-05 43.2 11.6 40 533-574 118-157 (373)
156 2ehv_A Hypothetical protein PH 88.3 0.55 1.9E-05 45.4 5.7 47 533-579 134-185 (251)
157 3bh0_A DNAB-like replicative h 87.9 2.1 7.2E-05 44.0 10.1 53 414-478 66-118 (315)
158 3i5x_A ATP-dependent RNA helic 87.9 2.7 9.4E-05 46.1 11.7 77 456-543 340-419 (563)
159 2zan_A Vacuolar protein sortin 87.7 1.3 4.4E-05 47.9 8.7 52 378-432 130-183 (444)
160 2jgn_A DBX, DDX3, ATP-dependen 87.6 0.87 3E-05 43.0 6.5 70 457-540 48-120 (185)
161 4b4t_I 26S protease regulatory 87.6 0.96 3.3E-05 49.1 7.5 53 377-432 177-232 (437)
162 1nlf_A Regulatory protein REPA 87.5 3.5 0.00012 41.1 11.3 23 412-434 26-48 (279)
163 1w5s_A Origin recognition comp 87.5 1.7 5.9E-05 45.2 9.3 17 416-432 50-68 (412)
164 3pvs_A Replication-associated 87.3 0.72 2.4E-05 50.2 6.4 17 417-433 51-67 (447)
165 3dm5_A SRP54, signal recogniti 87.1 2.2 7.4E-05 46.5 9.9 17 417-433 101-117 (443)
166 4b4t_K 26S protease regulatory 87.0 0.94 3.2E-05 49.1 7.1 52 378-432 168-222 (428)
167 2i4i_A ATP-dependent RNA helic 87.0 2 6.9E-05 44.7 9.5 71 456-540 277-350 (417)
168 1n0w_A DNA repair protein RAD5 86.8 1.6 5.6E-05 41.9 8.1 20 415-434 23-42 (243)
169 1sxj_C Activator 1 40 kDa subu 86.6 2.3 7.7E-05 43.8 9.5 39 533-572 109-147 (340)
170 3cmu_A Protein RECA, recombina 86.3 0.72 2.5E-05 58.8 6.4 25 410-434 1415-1445(2050)
171 3sqw_A ATP-dependent RNA helic 85.7 4.1 0.00014 45.1 11.7 78 456-544 289-369 (579)
172 3i32_A Heat resistant RNA depe 85.6 1.9 6.5E-05 44.3 8.2 70 457-540 30-102 (300)
173 1sxj_B Activator 1 37 kDa subu 85.5 1.8 6.1E-05 43.4 7.8 37 535-572 108-144 (323)
174 2cvh_A DNA repair and recombin 85.2 1.2 4.1E-05 42.1 6.1 19 415-433 19-37 (220)
175 4a1f_A DNAB helicase, replicat 84.5 0.69 2.4E-05 48.6 4.3 52 414-477 44-95 (338)
176 2fna_A Conserved hypothetical 84.4 24 0.00081 35.3 15.9 37 536-573 139-178 (357)
177 3fht_A ATP-dependent RNA helic 84.4 2 6.7E-05 44.6 7.8 71 457-541 268-341 (412)
178 3k1j_A LON protease, ATP-depen 84.3 2.9 9.8E-05 47.0 9.6 22 411-432 55-76 (604)
179 1hv8_A Putative ATP-dependent 84.3 2.2 7.4E-05 43.3 7.9 72 457-542 240-314 (367)
180 3m6a_A ATP-dependent protease 83.9 1.4 4.6E-05 49.1 6.6 18 415-432 107-124 (543)
181 2d7d_A Uvrabc system protein B 83.8 3.7 0.00013 46.7 10.3 77 457-547 447-526 (661)
182 3pey_A ATP-dependent RNA helic 83.3 2.2 7.7E-05 43.7 7.6 76 456-545 244-322 (395)
183 1g5t_A COB(I)alamin adenosyltr 83.0 1.7 6E-05 42.0 6.1 48 533-580 119-168 (196)
184 1s2m_A Putative ATP-dependent 82.8 2.5 8.6E-05 43.8 7.8 70 457-540 260-332 (400)
185 1xti_A Probable ATP-dependent 82.6 2.2 7.6E-05 43.9 7.3 73 457-543 252-327 (391)
186 1cr0_A DNA primase/helicase; R 82.1 0.86 3E-05 45.9 3.8 20 414-433 33-52 (296)
187 2ce7_A Cell division protein F 81.9 2.3 7.8E-05 46.7 7.3 49 379-432 13-65 (476)
188 1yks_A Genome polyprotein [con 81.8 1.2 4.2E-05 48.0 5.1 67 457-539 179-245 (440)
189 3bgw_A DNAB-like replicative h 81.8 1.4 4.7E-05 47.9 5.5 51 414-476 195-245 (444)
190 2db3_A ATP-dependent RNA helic 81.5 2.8 9.6E-05 44.7 7.8 69 458-540 303-374 (434)
191 1c4o_A DNA nucleotide excision 81.3 3.6 0.00012 46.8 9.0 76 457-546 441-519 (664)
192 2j0s_A ATP-dependent RNA helic 81.1 2.7 9.3E-05 43.8 7.4 70 457-540 278-350 (410)
193 3hr8_A Protein RECA; alpha and 80.7 2.1 7.2E-05 45.2 6.3 26 415-441 60-85 (356)
194 2zr9_A Protein RECA, recombina 80.4 1.3 4.3E-05 46.6 4.4 19 415-433 60-78 (349)
195 2v1x_A ATP-dependent DNA helic 80.0 3.3 0.00011 46.5 8.0 71 456-540 268-341 (591)
196 1wp9_A ATP-dependent RNA helic 79.3 6.5 0.00022 40.9 9.6 73 457-543 363-446 (494)
197 1ls1_A Signal recognition part 79.2 11 0.00038 38.2 11.0 44 533-576 179-223 (295)
198 1xp8_A RECA protein, recombina 79.0 3.4 0.00012 43.7 7.2 28 415-443 73-100 (366)
199 3hjh_A Transcription-repair-co 78.7 4.3 0.00015 44.6 8.2 52 415-480 13-64 (483)
200 3pxi_A Negative regulator of g 78.4 2.9 9.9E-05 48.2 7.0 26 535-561 580-605 (758)
201 1ypw_A Transitional endoplasmi 78.4 2.6 9E-05 49.2 6.7 18 415-432 237-254 (806)
202 3co5_A Putative two-component 78.3 1.4 4.9E-05 39.5 3.5 20 413-432 24-43 (143)
203 2yjt_D ATP-dependent RNA helic 79.6 0.43 1.5E-05 44.2 0.0 72 457-542 32-106 (170)
204 1oyw_A RECQ helicase, ATP-depe 77.3 3.8 0.00013 45.2 7.3 70 457-540 238-310 (523)
205 2eyq_A TRCF, transcription-rep 77.1 3.3 0.00011 50.3 7.2 78 456-545 813-893 (1151)
206 2xau_A PRE-mRNA-splicing facto 76.9 4.5 0.00015 47.0 8.1 75 457-540 305-393 (773)
207 3n70_A Transport activator; si 76.9 1.7 5.8E-05 39.0 3.6 20 414-433 22-41 (145)
208 2wv9_A Flavivirin protease NS2 76.8 3.1 0.00011 47.6 6.5 67 457-539 412-478 (673)
209 1e9r_A Conjugal transfer prote 75.8 2.3 7.9E-05 45.4 4.9 28 415-443 52-79 (437)
210 3cmu_A Protein RECA, recombina 74.5 2.3 8E-05 54.3 5.1 120 413-575 1078-1217(2050)
211 2jlq_A Serine protease subunit 74.2 4.2 0.00014 43.8 6.5 67 457-539 190-256 (451)
212 3cf2_A TER ATPase, transitiona 74.2 6.5 0.00022 45.9 8.4 45 534-578 297-351 (806)
213 1v5w_A DMC1, meiotic recombina 73.3 6.4 0.00022 40.8 7.4 18 415-432 121-138 (343)
214 1u94_A RECA protein, recombina 72.7 3.4 0.00012 43.5 5.1 26 415-441 62-87 (356)
215 3cmw_A Protein RECA, recombina 72.6 6 0.0002 49.9 8.0 123 416-578 1431-1570(1706)
216 3rc3_A ATP-dependent RNA helic 70.5 6.4 0.00022 45.0 7.1 74 458-546 323-401 (677)
217 3b85_A Phosphate starvation-in 70.3 5.2 0.00018 38.6 5.5 39 401-441 7-45 (208)
218 3cf2_A TER ATPase, transitiona 70.1 3.3 0.00011 48.4 4.6 53 377-432 472-527 (806)
219 2v6i_A RNA helicase; membrane, 70.0 4.7 0.00016 43.2 5.6 53 457-515 173-225 (431)
220 1qvr_A CLPB protein; coiled co 69.6 6.2 0.00021 46.2 6.9 17 416-432 191-207 (854)
221 2z43_A DNA repair and recombin 69.5 2.8 9.7E-05 43.1 3.6 18 415-432 106-123 (324)
222 2i1q_A DNA repair and recombin 69.2 4.2 0.00014 41.5 4.8 18 415-432 97-114 (322)
223 2whx_A Serine protease/ntpase/ 68.6 6.7 0.00023 44.3 6.7 67 457-539 357-423 (618)
224 3e70_C DPA, signal recognition 68.0 19 0.00065 37.2 9.6 28 415-444 128-155 (328)
225 1pzn_A RAD51, DNA repair and r 67.5 6.9 0.00023 40.8 6.1 18 416-433 131-148 (349)
226 3o8b_A HCV NS3 protease/helica 67.0 6.3 0.00021 45.0 6.1 65 456-539 397-461 (666)
227 3eiq_A Eukaryotic initiation f 66.8 4.7 0.00016 41.8 4.6 70 457-540 282-354 (414)
228 2yhs_A FTSY, cell division pro 66.7 15 0.0005 40.6 8.7 27 416-444 293-319 (503)
229 2eyu_A Twitching motility prot 65.8 3.3 0.00011 41.5 3.1 29 413-443 22-50 (261)
230 3lda_A DNA repair protein RAD5 65.7 9.9 0.00034 40.6 7.0 19 415-433 177-195 (400)
231 3hws_A ATP-dependent CLP prote 65.5 6.5 0.00022 40.7 5.4 19 415-433 50-68 (363)
232 1ofh_A ATP-dependent HSL prote 65.2 8.2 0.00028 38.2 6.0 17 416-432 50-66 (310)
233 1p9r_A General secretion pathw 65.0 7.6 0.00026 41.8 5.9 18 415-432 166-183 (418)
234 2oca_A DAR protein, ATP-depend 64.1 29 0.00098 37.3 10.5 75 458-545 350-427 (510)
235 2z83_A Helicase/nucleoside tri 62.9 5.2 0.00018 43.2 4.2 53 457-515 192-244 (459)
236 2oap_1 GSPE-2, type II secreti 62.9 3.7 0.00013 45.4 3.1 39 392-432 237-276 (511)
237 3oiy_A Reverse gyrase helicase 62.7 4.5 0.00015 42.4 3.6 70 457-543 254-329 (414)
238 2z0m_A 337AA long hypothetical 62.1 12 0.0004 37.3 6.5 68 457-542 222-292 (337)
239 1lvg_A Guanylate kinase, GMP k 62.1 4.6 0.00016 38.2 3.3 26 415-442 3-28 (198)
240 2gza_A Type IV secretion syste 61.5 4.1 0.00014 42.7 3.0 20 412-431 171-190 (361)
241 3io5_A Recombination and repai 60.5 9.4 0.00032 39.9 5.4 93 418-547 30-124 (333)
242 2ffh_A Protein (FFH); SRP54, s 60.4 53 0.0018 35.3 11.5 19 415-433 97-115 (425)
243 1q57_A DNA primase/helicase; d 60.1 20 0.0007 38.8 8.4 20 413-432 239-258 (503)
244 3nbx_X ATPase RAVA; AAA+ ATPas 59.9 8.1 0.00028 42.5 5.1 34 399-432 24-57 (500)
245 2zts_A Putative uncharacterize 59.7 6.6 0.00023 37.5 3.9 18 415-432 29-46 (251)
246 3tbk_A RIG-I helicase domain; 59.4 15 0.00052 39.3 7.2 77 457-543 391-479 (555)
247 2bjv_A PSP operon transcriptio 59.2 6 0.0002 38.8 3.6 19 414-432 27-45 (265)
248 1kgd_A CASK, peripheral plasma 59.0 5.4 0.00019 36.9 3.1 19 414-432 3-21 (180)
249 3fmp_B ATP-dependent RNA helic 58.8 2 6.8E-05 46.2 0.0 70 456-539 334-406 (479)
250 3cmw_A Protein RECA, recombina 58.5 12 0.00042 47.1 6.9 20 415-434 33-52 (1706)
251 1tf7_A KAIC; homohexamer, hexa 58.1 28 0.00094 38.1 9.1 43 532-575 369-417 (525)
252 1u0j_A DNA replication protein 57.9 14 0.0005 37.2 6.2 44 388-434 73-122 (267)
253 4ag6_A VIRB4 ATPase, type IV s 57.7 6.1 0.00021 41.5 3.5 31 534-564 262-295 (392)
254 2ewv_A Twitching motility prot 57.6 5.1 0.00018 42.2 2.9 29 413-443 133-161 (372)
255 3h1t_A Type I site-specific re 57.6 22 0.00074 39.3 8.2 79 456-543 440-526 (590)
256 4f4c_A Multidrug resistance pr 57.4 12 0.00042 46.0 6.6 41 532-572 1233-1273(1321)
257 1lv7_A FTSH; alpha/beta domain 57.2 6.8 0.00023 38.2 3.6 51 379-432 9-61 (257)
258 3jvv_A Twitching mobility prot 55.8 6.4 0.00022 41.4 3.2 19 414-432 121-139 (356)
259 3tr0_A Guanylate kinase, GMP k 55.6 6.6 0.00022 36.6 3.0 19 414-432 5-23 (205)
260 3nwn_A Kinesin-like protein KI 54.9 6.3 0.00021 41.6 3.0 26 408-433 95-122 (359)
261 2gno_A DNA polymerase III, gam 54.5 30 0.001 35.2 8.1 45 532-578 80-124 (305)
262 3uk6_A RUVB-like 2; hexameric 53.8 13 0.00045 38.0 5.3 18 416-433 70-87 (368)
263 2r44_A Uncharacterized protein 53.7 6 0.00021 40.2 2.6 24 409-432 39-62 (331)
264 1ixz_A ATP-dependent metallopr 53.6 5.6 0.00019 38.7 2.3 52 378-432 12-65 (254)
265 1bg2_A Kinesin; motor protein, 52.9 7.4 0.00025 40.5 3.1 25 409-433 69-95 (325)
266 1w36_B RECB, exodeoxyribonucle 52.3 16 0.00056 44.3 6.5 63 418-480 18-81 (1180)
267 1tue_A Replication protein E1; 52.2 14 0.00049 36.0 4.9 43 388-432 28-74 (212)
268 2x8a_A Nuclear valosin-contain 52.1 4 0.00014 41.0 0.9 52 378-432 6-60 (274)
269 1z6g_A Guanylate kinase; struc 51.7 9 0.00031 36.8 3.3 19 414-432 21-39 (218)
270 2pt7_A CAG-ALFA; ATPase, prote 51.3 6 0.00021 40.9 2.2 56 46-123 1-56 (330)
271 3vaa_A Shikimate kinase, SK; s 50.8 9.5 0.00032 35.7 3.3 19 415-433 24-42 (199)
272 2h58_A Kinesin-like protein KI 50.8 8.3 0.00028 40.2 3.1 26 408-433 71-98 (330)
273 4etp_A Kinesin-like protein KA 50.7 8.1 0.00028 41.4 3.1 25 409-433 132-158 (403)
274 2zfi_A Kinesin-like protein KI 50.6 8.3 0.00028 40.8 3.1 25 409-433 81-107 (366)
275 1v8k_A Kinesin-like protein KI 50.6 8.4 0.00029 41.4 3.2 25 409-433 146-172 (410)
276 2ius_A DNA translocase FTSK; n 50.6 14 0.00047 40.9 5.0 19 416-434 167-185 (512)
277 3dc4_A Kinesin-like protein NO 50.5 7.7 0.00026 40.7 2.8 25 409-433 86-112 (344)
278 2vvg_A Kinesin-2; motor protei 50.4 8.4 0.00029 40.5 3.1 25 409-433 81-107 (350)
279 3t0q_A AGR253WP; kinesin, alph 50.4 8.4 0.00029 40.4 3.1 25 409-433 77-103 (349)
280 3gbj_A KIF13B protein; kinesin 50.4 8.2 0.00028 40.6 3.0 26 408-433 83-110 (354)
281 3b6u_A Kinesin-like protein KI 50.2 8.3 0.00028 40.9 3.0 25 409-433 93-119 (372)
282 1goj_A Kinesin, kinesin heavy 50.2 8.4 0.00029 40.5 3.1 25 409-433 72-98 (355)
283 1t5c_A CENP-E protein, centrom 50.1 8.3 0.00028 40.5 3.0 25 409-433 69-95 (349)
284 1s96_A Guanylate kinase, GMP k 50.0 9.2 0.00031 37.1 3.1 21 412-432 12-32 (219)
285 3lre_A Kinesin-like protein KI 49.9 8.6 0.00029 40.5 3.1 25 409-433 97-123 (355)
286 2nr8_A Kinesin-like protein KI 49.9 8.4 0.00029 40.6 3.0 25 408-432 94-120 (358)
287 2y65_A Kinesin, kinesin heavy 49.8 9.1 0.00031 40.4 3.3 25 409-433 76-102 (365)
288 4a14_A Kinesin, kinesin-like p 49.7 9.1 0.00031 40.0 3.2 25 409-433 75-101 (344)
289 1x88_A Kinesin-like protein KI 49.7 8 0.00027 40.7 2.8 25 408-432 79-105 (359)
290 2qor_A Guanylate kinase; phosp 49.5 6.1 0.00021 37.3 1.7 21 412-432 8-28 (204)
291 3iij_A Coilin-interacting nucl 49.3 5.1 0.00017 36.8 1.1 20 414-433 9-28 (180)
292 1znw_A Guanylate kinase, GMP k 48.9 10 0.00034 35.9 3.2 29 412-442 16-44 (207)
293 1fuu_A Yeast initiation factor 48.8 3.6 0.00012 42.2 0.0 70 457-540 261-333 (394)
294 1ojl_A Transcriptional regulat 48.8 9.8 0.00034 38.7 3.3 18 415-432 24-41 (304)
295 3c8u_A Fructokinase; YP_612366 48.8 11 0.00036 35.7 3.3 27 415-443 21-47 (208)
296 3mm4_A Histidine kinase homolo 48.7 1.6E+02 0.0056 27.0 11.9 133 414-575 18-161 (206)
297 3cob_A Kinesin heavy chain-lik 48.3 7.9 0.00027 41.0 2.5 25 409-433 71-97 (369)
298 1kag_A SKI, shikimate kinase I 48.0 10 0.00035 34.2 3.0 17 416-432 4-20 (173)
299 1f9v_A Kinesin-like protein KA 47.9 7.9 0.00027 40.6 2.4 25 409-433 76-102 (347)
300 2j41_A Guanylate kinase; GMP, 47.8 7.7 0.00026 36.1 2.1 19 414-432 4-22 (207)
301 2wbe_C Bipolar kinesin KRP-130 47.7 8.5 0.00029 40.8 2.7 25 408-432 91-117 (373)
302 3a00_A Guanylate kinase, GMP k 47.6 11 0.00038 34.9 3.2 23 417-441 2-24 (186)
303 3fho_A ATP-dependent RNA helic 47.5 5.7 0.0002 43.3 1.3 71 457-541 359-432 (508)
304 3u06_A Protein claret segregat 47.4 9.4 0.00032 41.0 2.9 26 408-433 129-156 (412)
305 2r62_A Cell division protease 47.3 6.6 0.00023 38.5 1.6 17 416-432 44-60 (268)
306 3tau_A Guanylate kinase, GMP k 47.1 9.1 0.00031 36.3 2.5 18 415-432 7-24 (208)
307 3lw7_A Adenylate kinase relate 47.1 6.8 0.00023 34.9 1.5 15 418-432 3-17 (179)
308 4gl2_A Interferon-induced heli 47.1 4.9 0.00017 45.3 0.7 59 457-515 402-472 (699)
309 2heh_A KIF2C protein; kinesin, 47.1 10 0.00034 40.5 3.1 25 409-433 126-152 (387)
310 2owm_A Nckin3-434, related to 47.0 10 0.00034 41.2 3.1 26 408-433 127-154 (443)
311 2w00_A HSDR, R.ECOR124I; ATP-b 46.9 44 0.0015 40.1 8.9 38 455-492 537-581 (1038)
312 3trf_A Shikimate kinase, SK; a 46.9 7.3 0.00025 35.7 1.8 18 416-433 5-22 (185)
313 1iy2_A ATP-dependent metallopr 46.8 7.6 0.00026 38.5 2.0 52 378-432 36-89 (278)
314 3bfn_A Kinesin-like protein KI 46.2 8.4 0.00029 41.1 2.3 24 410-433 91-116 (388)
315 1zp6_A Hypothetical protein AT 46.2 6.6 0.00023 36.2 1.3 20 413-432 6-25 (191)
316 1qhx_A CPT, protein (chloramph 45.6 7.9 0.00027 35.2 1.8 18 416-433 3-20 (178)
317 3vkg_A Dynein heavy chain, cyt 45.5 14 0.00049 49.3 4.7 49 386-434 873-924 (3245)
318 2rep_A Kinesin-like protein KI 45.4 9.4 0.00032 40.5 2.5 25 409-433 107-133 (376)
319 1j8m_F SRP54, signal recogniti 45.2 89 0.003 31.5 9.8 18 416-433 98-115 (297)
320 2va8_A SSO2462, SKI2-type heli 45.2 38 0.0013 38.3 7.8 75 457-540 254-362 (715)
321 3foz_A TRNA delta(2)-isopenten 45.1 7.7 0.00026 40.3 1.7 16 418-433 12-27 (316)
322 3exa_A TRNA delta(2)-isopenten 45.0 7.7 0.00026 40.3 1.7 17 417-433 4-20 (322)
323 2xxa_A Signal recognition part 45.0 91 0.0031 33.4 10.3 17 417-433 101-117 (433)
324 2iut_A DNA translocase FTSK; n 44.9 19 0.00064 40.4 5.0 24 416-439 214-237 (574)
325 2v9p_A Replication protein E1; 44.8 12 0.00041 38.5 3.1 27 414-442 124-150 (305)
326 1vma_A Cell division protein F 44.7 70 0.0024 32.6 9.0 17 416-432 104-120 (306)
327 2zj8_A DNA helicase, putative 44.6 30 0.001 39.3 6.8 77 457-543 239-346 (720)
328 2ze6_A Isopentenyl transferase 44.6 7.7 0.00026 38.3 1.6 16 418-433 3-18 (253)
329 1rj9_A FTSY, signal recognitio 44.2 21 0.00073 36.4 5.0 27 416-444 102-128 (304)
330 3a8t_A Adenylate isopentenyltr 44.2 9.5 0.00032 39.9 2.3 18 416-433 40-57 (339)
331 4gp7_A Metallophosphoesterase; 43.1 7 0.00024 35.9 1.0 20 415-434 8-27 (171)
332 1ry6_A Internal kinesin; kines 43.0 12 0.0004 39.5 2.8 19 415-433 82-102 (360)
333 4eun_A Thermoresistant glucoki 43.0 15 0.00051 34.4 3.3 18 415-432 28-45 (200)
334 4a2p_A RIG-I, retinoic acid in 42.9 11 0.00036 40.8 2.5 77 457-543 392-480 (556)
335 3kta_A Chromosome segregation 42.8 11 0.00039 34.3 2.4 23 418-442 28-50 (182)
336 4ddu_A Reverse gyrase; topoiso 42.5 18 0.00061 43.8 4.6 72 457-545 311-388 (1104)
337 1g8p_A Magnesium-chelatase 38 42.3 14 0.00048 37.4 3.2 17 416-432 45-61 (350)
338 1ex7_A Guanylate kinase; subst 41.7 9.3 0.00032 36.3 1.6 16 417-432 2-17 (186)
339 3ney_A 55 kDa erythrocyte memb 41.6 12 0.00042 35.9 2.5 19 414-432 17-35 (197)
340 3b9q_A Chloroplast SRP recepto 41.4 22 0.00076 36.2 4.5 28 415-444 99-126 (302)
341 1ye8_A Protein THEP1, hypothet 41.4 15 0.00052 34.2 3.0 39 532-573 97-137 (178)
342 1hqc_A RUVB; extended AAA-ATPa 41.2 19 0.00066 35.9 4.1 17 416-432 38-54 (324)
343 1tf5_A Preprotein translocase 41.2 59 0.002 38.0 8.5 53 458-515 435-488 (844)
344 1m7g_A Adenylylsulfate kinase; 41.0 26 0.00088 33.0 4.7 31 402-433 12-42 (211)
345 3lnc_A Guanylate kinase, GMP k 40.8 11 0.00038 36.1 2.1 19 414-432 25-43 (231)
346 1knq_A Gluconate kinase; ALFA/ 40.7 15 0.00051 33.2 2.9 17 416-432 8-24 (175)
347 1z5z_A Helicase of the SNF2/RA 40.7 63 0.0022 32.1 7.8 96 425-544 93-193 (271)
348 3t15_A Ribulose bisphosphate c 40.6 9.1 0.00031 38.6 1.5 16 417-432 37-52 (293)
349 2j37_W Signal recognition part 40.5 70 0.0024 35.1 8.7 16 418-433 103-118 (504)
350 4akg_A Glutathione S-transfera 40.5 25 0.00087 46.4 5.8 48 386-434 890-941 (2695)
351 1f2t_A RAD50 ABC-ATPase; DNA d 40.4 16 0.00056 32.9 3.0 23 418-442 25-47 (149)
352 1kht_A Adenylate kinase; phosp 40.4 10 0.00036 34.5 1.7 17 416-432 3-19 (192)
353 2ca6_A RAN GTPase-activating p 40.4 7.7 0.00026 40.1 0.9 10 98-107 174-183 (386)
354 2ykg_A Probable ATP-dependent 40.3 20 0.00068 40.2 4.4 77 457-543 400-488 (696)
355 4a2q_A RIG-I, retinoic acid in 40.3 23 0.00078 40.8 5.0 78 457-543 633-721 (797)
356 2qmh_A HPR kinase/phosphorylas 40.1 11 0.00038 36.7 1.9 17 416-432 34-50 (205)
357 3tif_A Uncharacterized ABC tra 40.0 12 0.00041 36.6 2.2 44 532-575 161-205 (235)
358 2i3b_A HCR-ntpase, human cance 39.8 19 0.00065 34.0 3.5 43 532-577 103-147 (189)
359 3kb2_A SPBC2 prophage-derived 39.8 10 0.00035 33.9 1.6 15 418-432 3-17 (173)
360 4fcw_A Chaperone protein CLPB; 39.8 30 0.001 34.2 5.2 17 417-433 48-64 (311)
361 4f4c_A Multidrug resistance pr 39.7 50 0.0017 40.6 8.0 41 532-572 570-610 (1321)
362 1ly1_A Polynucleotide kinase; 39.6 11 0.00036 34.1 1.6 15 418-432 4-18 (181)
363 3dmq_A RNA polymerase-associat 39.3 20 0.00067 42.7 4.2 75 457-544 505-584 (968)
364 1y63_A LMAJ004144AAA protein; 39.2 12 0.00039 34.7 1.8 19 415-433 9-27 (184)
365 1um8_A ATP-dependent CLP prote 38.9 14 0.00048 38.3 2.6 18 416-433 72-89 (376)
366 3asz_A Uridine kinase; cytidin 38.8 17 0.00057 34.0 2.9 25 416-442 6-30 (211)
367 1in4_A RUVB, holliday junction 38.6 17 0.00059 37.1 3.3 16 417-432 52-67 (334)
368 3uie_A Adenylyl-sulfate kinase 38.4 17 0.00059 33.9 3.0 30 402-432 12-41 (200)
369 4a2w_A RIG-I, retinoic acid in 38.2 19 0.00065 42.6 3.9 78 456-543 632-721 (936)
370 2px0_A Flagellar biosynthesis 37.9 28 0.00095 35.3 4.6 19 415-433 104-122 (296)
371 2c9o_A RUVB-like 1; hexameric 37.7 14 0.00048 39.7 2.4 18 416-433 63-80 (456)
372 3kta_B Chromosome segregation 37.4 23 0.0008 33.1 3.6 40 534-573 86-125 (173)
373 3crm_A TRNA delta(2)-isopenten 37.1 14 0.00048 38.3 2.3 16 418-433 7-22 (323)
374 3d8b_A Fidgetin-like protein 1 36.9 15 0.00052 38.0 2.5 51 379-432 81-133 (357)
375 3cm0_A Adenylate kinase; ATP-b 36.8 11 0.00038 34.4 1.3 19 415-433 3-21 (186)
376 2p6r_A Afuhel308 helicase; pro 36.1 27 0.00091 39.6 4.6 75 457-540 244-346 (702)
377 2og2_A Putative signal recogni 35.7 29 0.001 36.3 4.5 28 415-444 156-183 (359)
378 1gku_B Reverse gyrase, TOP-RG; 35.7 24 0.00083 42.3 4.3 75 457-544 277-352 (1054)
379 1nij_A Hypothetical protein YJ 35.6 28 0.00097 35.4 4.3 38 533-573 150-187 (318)
380 4a74_A DNA repair and recombin 35.4 13 0.00045 34.9 1.6 19 414-432 23-41 (231)
381 3d3q_A TRNA delta(2)-isopenten 35.4 13 0.00046 38.8 1.8 16 418-433 9-24 (340)
382 2cbz_A Multidrug resistance-as 35.1 16 0.00055 35.7 2.2 47 532-579 143-192 (237)
383 2p6n_A ATP-dependent RNA helic 34.3 23 0.00079 33.2 3.1 35 597-631 25-65 (191)
384 3eph_A TRNA isopentenyltransfe 34.3 14 0.00047 39.7 1.7 16 418-433 4-19 (409)
385 3pxg_A Negative regulator of g 33.9 21 0.00073 38.5 3.2 18 416-433 201-218 (468)
386 3nwj_A ATSK2; P loop, shikimat 33.8 19 0.00065 35.7 2.5 21 413-433 45-65 (250)
387 3t61_A Gluconokinase; PSI-biol 33.4 24 0.00081 32.8 3.0 17 417-433 19-35 (202)
388 2c95_A Adenylate kinase 1; tra 33.3 17 0.00057 33.4 1.9 20 413-432 6-25 (196)
389 3qf7_A RAD50; ABC-ATPase, ATPa 33.3 14 0.00049 38.5 1.6 42 533-574 302-343 (365)
390 2ghi_A Transport protein; mult 33.1 18 0.00061 36.0 2.2 47 532-579 171-217 (260)
391 2v54_A DTMP kinase, thymidylat 33.1 15 0.00051 34.0 1.5 18 415-432 3-20 (204)
392 2bdt_A BH3686; alpha-beta prot 33.0 17 0.00059 33.4 1.9 16 417-432 3-18 (189)
393 1htw_A HI0065; nucleotide-bind 32.9 19 0.00064 33.1 2.1 27 414-442 31-57 (158)
394 2pze_A Cystic fibrosis transme 32.8 18 0.00062 35.1 2.1 47 532-579 146-193 (229)
395 1sgw_A Putative ABC transporte 32.7 19 0.00066 34.7 2.3 47 532-578 149-195 (214)
396 2pcj_A ABC transporter, lipopr 32.6 18 0.0006 35.1 2.0 44 532-575 156-199 (224)
397 3gfo_A Cobalt import ATP-bindi 32.5 18 0.00062 36.4 2.2 47 532-578 159-206 (275)
398 2ff7_A Alpha-hemolysin translo 32.5 18 0.00063 35.6 2.1 48 532-580 161-208 (247)
399 1gvn_B Zeta; postsegregational 32.4 16 0.00056 36.7 1.8 16 417-432 34-49 (287)
400 4h1g_A Maltose binding protein 32.4 21 0.00072 40.9 2.9 25 408-432 453-479 (715)
401 2r2a_A Uncharacterized protein 32.4 19 0.00064 34.5 2.1 16 418-433 7-22 (199)
402 1cke_A CK, MSSA, protein (cyti 32.3 25 0.00086 33.1 3.0 17 417-433 6-22 (227)
403 1mv5_A LMRA, multidrug resista 32.2 17 0.00058 35.6 1.8 47 532-579 155-201 (243)
404 1g6h_A High-affinity branched- 32.0 19 0.00064 35.6 2.1 24 413-438 30-53 (257)
405 3qks_A DNA double-strand break 31.9 26 0.00089 33.2 3.0 24 418-443 25-48 (203)
406 1nks_A Adenylate kinase; therm 31.8 27 0.00092 31.6 3.1 15 418-432 3-17 (194)
407 2rhm_A Putative kinase; P-loop 31.6 14 0.00049 33.8 1.1 17 416-432 5-21 (193)
408 1g41_A Heat shock protein HSLU 31.5 63 0.0021 34.9 6.3 17 416-432 50-66 (444)
409 3f9v_A Minichromosome maintena 31.5 19 0.00063 40.5 2.2 14 418-431 329-342 (595)
410 2f1r_A Molybdopterin-guanine d 31.4 14 0.00049 34.3 1.1 24 418-443 4-27 (171)
411 1b0u_A Histidine permease; ABC 31.4 20 0.00068 35.7 2.2 47 532-578 169-215 (262)
412 3hzh_A Chemotaxis response reg 31.1 2.3E+02 0.0079 24.3 9.2 88 455-579 36-125 (157)
413 4g1u_C Hemin import ATP-bindin 30.9 20 0.00068 35.8 2.1 45 534-578 165-210 (266)
414 1rz3_A Hypothetical protein rb 30.7 45 0.0016 31.1 4.5 17 416-432 22-38 (201)
415 1ji0_A ABC transporter; ATP bi 30.7 21 0.0007 35.0 2.1 47 532-578 155-201 (240)
416 1tev_A UMP-CMP kinase; ploop, 30.5 18 0.00062 32.9 1.6 18 416-433 3-20 (196)
417 2r2a_A Uncharacterized protein 30.4 25 0.00085 33.6 2.6 40 535-574 88-132 (199)
418 1tf7_A KAIC; homohexamer, hexa 30.4 36 0.0012 37.2 4.3 30 414-443 37-66 (525)
419 2bwj_A Adenylate kinase 5; pho 30.4 18 0.00061 33.3 1.5 18 415-432 11-28 (199)
420 2pez_A Bifunctional 3'-phospho 30.3 29 0.00098 31.6 3.0 18 415-432 4-21 (179)
421 3auy_A DNA double-strand break 30.3 26 0.00088 36.5 2.9 22 419-442 28-49 (371)
422 2jaq_A Deoxyguanosine kinase; 30.2 29 0.00099 31.8 3.0 15 418-432 2-16 (205)
423 2ixe_A Antigen peptide transpo 29.8 22 0.00075 35.6 2.2 24 413-438 42-65 (271)
424 2zu0_C Probable ATP-dependent 29.8 22 0.00075 35.5 2.2 24 413-438 43-66 (267)
425 2plr_A DTMP kinase, probable t 29.7 18 0.0006 33.6 1.4 18 415-432 3-20 (213)
426 1odf_A YGR205W, hypothetical 3 29.7 30 0.001 35.0 3.2 15 418-432 33-47 (290)
427 2d2e_A SUFC protein; ABC-ATPas 29.6 22 0.00075 35.0 2.1 24 413-438 26-49 (250)
428 3aez_A Pantothenate kinase; tr 29.6 28 0.00097 35.5 3.1 27 415-443 89-115 (312)
429 2olj_A Amino acid ABC transpor 29.6 22 0.00076 35.5 2.2 48 532-579 175-222 (263)
430 3u4q_B ATP-dependent helicase/ 29.6 38 0.0013 40.9 4.6 39 420-466 5-43 (1166)
431 2yz2_A Putative ABC transporte 29.5 22 0.00076 35.3 2.2 24 413-438 30-53 (266)
432 1vpl_A ABC transporter, ATP-bi 29.5 22 0.00077 35.2 2.2 24 413-438 38-61 (256)
433 4dzz_A Plasmid partitioning pr 29.3 1.1E+02 0.0039 27.8 7.0 13 422-434 8-20 (206)
434 2qt1_A Nicotinamide riboside k 29.3 13 0.00045 34.8 0.5 20 413-432 18-37 (207)
435 2qi9_C Vitamin B12 import ATP- 29.2 22 0.00077 35.1 2.1 43 537-579 154-196 (249)
436 2chq_A Replication factor C sm 29.0 30 0.001 34.1 3.0 41 379-432 14-54 (319)
437 2nq2_C Hypothetical ABC transp 28.7 23 0.00079 35.0 2.1 48 532-579 144-192 (253)
438 2yvu_A Probable adenylyl-sulfa 28.5 33 0.0011 31.3 3.1 19 415-433 12-30 (186)
439 2ihy_A ABC transporter, ATP-bi 28.5 23 0.00079 35.6 2.1 32 532-563 177-208 (279)
440 3tqc_A Pantothenate kinase; bi 28.4 47 0.0016 34.2 4.5 24 418-443 94-117 (321)
441 1qf9_A UMP/CMP kinase, protein 28.2 20 0.00069 32.5 1.5 15 418-432 8-22 (194)
442 1via_A Shikimate kinase; struc 28.2 25 0.00085 31.9 2.1 16 418-433 6-21 (175)
443 1e6c_A Shikimate kinase; phosp 28.0 21 0.00072 32.0 1.6 17 417-433 3-19 (173)
444 3pxi_A Negative regulator of g 27.9 30 0.001 39.6 3.2 18 416-433 201-218 (758)
445 3l9o_A ATP-dependent RNA helic 27.7 51 0.0018 39.8 5.3 74 457-539 443-553 (1108)
446 1zd8_A GTP:AMP phosphotransfer 27.6 20 0.0007 34.1 1.5 17 416-432 7-23 (227)
447 1zuh_A Shikimate kinase; alpha 27.5 25 0.00085 31.6 2.0 17 417-433 8-24 (168)
448 3fb4_A Adenylate kinase; psych 27.4 24 0.00083 33.0 1.9 16 418-433 2-17 (216)
449 2iyv_A Shikimate kinase, SK; t 27.2 25 0.00085 32.0 1.9 17 417-433 3-19 (184)
450 3nh6_A ATP-binding cassette SU 27.0 18 0.00061 37.1 1.0 47 532-579 206-252 (306)
451 2r8r_A Sensor protein; KDPD, P 26.8 51 0.0018 32.4 4.2 19 416-434 5-24 (228)
452 1ukz_A Uridylate kinase; trans 26.4 23 0.00079 32.8 1.6 15 418-432 17-31 (203)
453 1gtv_A TMK, thymidylate kinase 26.2 21 0.00071 33.3 1.2 14 419-432 3-16 (214)
454 1np6_A Molybdopterin-guanine d 26.1 40 0.0014 31.4 3.2 15 418-432 8-22 (174)
455 3dl0_A Adenylate kinase; phosp 25.9 27 0.00091 32.8 1.9 16 418-433 2-17 (216)
456 1xjc_A MOBB protein homolog; s 25.8 41 0.0014 31.3 3.2 15 418-432 6-20 (169)
457 1jr3_D DNA polymerase III, del 25.6 71 0.0024 32.3 5.3 44 532-576 74-118 (343)
458 1nn5_A Similar to deoxythymidy 25.5 25 0.00087 32.6 1.7 19 415-433 8-26 (215)
459 2wwf_A Thymidilate kinase, put 25.3 23 0.0008 32.8 1.4 18 415-432 9-26 (212)
460 2cdn_A Adenylate kinase; phosp 25.3 22 0.00075 33.1 1.2 17 416-432 20-36 (201)
461 2bbw_A Adenylate kinase 4, AK4 25.2 28 0.00095 33.6 1.9 17 416-432 27-43 (246)
462 2i3b_A HCR-ntpase, human cance 24.9 59 0.002 30.5 4.1 26 416-443 1-26 (189)
463 2if2_A Dephospho-COA kinase; a 24.9 28 0.00095 32.3 1.8 15 418-432 3-17 (204)
464 2pt5_A Shikimate kinase, SK; a 24.9 26 0.00088 31.2 1.6 15 418-432 2-16 (168)
465 2jeo_A Uridine-cytidine kinase 24.8 37 0.0013 32.8 2.8 19 415-433 24-42 (245)
466 2bbs_A Cystic fibrosis transme 24.7 30 0.001 35.1 2.1 47 532-579 175-222 (290)
467 1aky_A Adenylate kinase; ATP:A 24.7 27 0.00093 32.9 1.8 17 416-432 4-20 (220)
468 2z0h_A DTMP kinase, thymidylat 24.7 42 0.0014 30.5 3.0 14 419-432 3-16 (197)
469 4akg_A Glutathione S-transfera 24.6 25 0.00084 46.5 1.8 20 413-432 1264-1283(2695)
470 2onk_A Molybdate/tungstate ABC 24.6 35 0.0012 33.5 2.5 47 532-578 142-189 (240)
471 2fsf_A Preprotein translocase 24.5 1.3E+02 0.0045 35.2 7.6 53 458-515 444-497 (853)
472 3tlx_A Adenylate kinase 2; str 24.5 35 0.0012 33.1 2.6 18 415-432 28-45 (243)
473 2pbr_A DTMP kinase, thymidylat 24.5 26 0.0009 31.8 1.6 14 419-432 3-16 (195)
474 1zak_A Adenylate kinase; ATP:A 24.5 29 0.001 32.8 1.9 18 416-433 5-22 (222)
475 1zu4_A FTSY; GTPase, signal re 24.4 63 0.0022 33.1 4.6 19 415-433 104-122 (320)
476 2vli_A Antibiotic resistance p 24.4 25 0.00085 31.8 1.4 18 416-433 5-22 (183)
477 2qxy_A Response regulator; reg 24.3 3E+02 0.01 22.7 9.5 41 534-578 48-88 (142)
478 2pv9_C Proteinase-activated re 24.2 17 0.00057 23.5 0.1 8 30-37 7-14 (26)
479 1z3i_X Similar to RAD54-like; 24.2 2.2E+02 0.0076 31.7 9.4 73 457-543 418-496 (644)
480 3mwy_W Chromo domain-containin 24.2 2E+02 0.0067 33.1 9.2 73 457-543 574-652 (800)
481 1sq5_A Pantothenate kinase; P- 24.1 40 0.0014 34.1 2.9 26 416-443 80-105 (308)
482 2pjz_A Hypothetical protein ST 23.8 32 0.0011 34.3 2.1 23 413-438 28-50 (263)
483 1jjv_A Dephospho-COA kinase; P 23.5 32 0.0011 32.0 1.9 15 418-432 4-18 (206)
484 3sop_A Neuronal-specific septi 23.4 41 0.0014 33.5 2.9 15 418-432 4-18 (270)
485 3a4m_A L-seryl-tRNA(SEC) kinas 23.4 28 0.00096 34.1 1.6 17 417-433 5-21 (260)
486 2qen_A Walker-type ATPase; unk 23.0 39 0.0013 33.6 2.6 36 536-572 130-171 (350)
487 1ak2_A Adenylate kinase isoenz 22.9 35 0.0012 32.7 2.1 18 415-432 15-32 (233)
488 1z63_A Helicase of the SNF2/RA 22.9 1.5E+02 0.005 31.5 7.3 75 457-544 343-422 (500)
489 4ag6_A VIRB4 ATPase, type IV s 22.9 52 0.0018 34.2 3.7 10 388-397 177-186 (392)
490 4e22_A Cytidylate kinase; P-lo 22.8 35 0.0012 33.3 2.2 19 415-433 26-44 (252)
491 3ice_A Transcription terminati 22.8 1.3E+02 0.0044 32.3 6.6 29 405-433 160-191 (422)
492 1uf9_A TT1252 protein; P-loop, 22.8 32 0.0011 31.5 1.8 15 418-432 10-24 (203)
493 1e69_A Chromosome segregation 22.5 40 0.0014 34.2 2.6 21 419-441 27-47 (322)
494 3ibp_A Chromosome partition pr 22.5 1.7E+02 0.0058 29.9 7.0 57 42-113 66-123 (302)
495 1nkt_A Preprotein translocase 22.4 2E+02 0.0068 34.0 8.6 53 458-515 463-516 (922)
496 3cg0_A Response regulator rece 22.4 3.2E+02 0.011 22.4 11.3 85 455-578 9-95 (140)
497 3fvq_A Fe(3+) IONS import ATP- 22.2 37 0.0013 35.7 2.3 24 415-440 29-52 (359)
498 1e4v_A Adenylate kinase; trans 22.1 30 0.001 32.5 1.5 15 418-432 2-16 (214)
499 3qkt_A DNA double-strand break 21.9 31 0.0011 35.4 1.6 15 419-433 26-40 (339)
500 1z47_A CYSA, putative ABC-tran 21.7 38 0.0013 35.4 2.3 25 413-439 38-62 (355)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3e-35 Score=321.41 Aligned_cols=245 Identities=30% Similarity=0.456 Sum_probs=198.1
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
+..+|++++|++.++++|.++||..||++|.++||.+++|+|++++|+||||||++|++|+++++...... ....++
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~---~~~~~~ 130 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE---LELGRP 130 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC---CCTTCC
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc---cccCCc
Confidence 35679999999999999999999999999999999999999999999999999999999999998875431 122356
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
++|||+|||+||.|+++.+.+++... ++++.+++||.....+...+.. +++|+|+||++|++++.+. ...+.+++
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~---~~~l~~~~ 205 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITR-GCHVVIATPGRLLDFVDRT---FITFEDTR 205 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHTT-CCSEEEECHHHHHHHHHTT---SCCCTTCC
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhhc-CCCEEEEChHHHHHHHHhC---CcccccCC
Confidence 79999999999999999999997654 6888999999987766665554 5899999999999999866 35689999
Q ss_pred EEEEecccccCCcChHHHHHHHHHHC--CCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeeh
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCL--PRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYV 609 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~l--pk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v 609 (633)
+|||||||+|++++|...+..|+..+ ++.+|+++||||+++.+. +..++.++..... .....++.|.++.+
T Consensus 206 ~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~--~~~~~~i~~~~~~~ 283 (434)
T 2db3_A 206 FVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV--GGACSDVKQTIYEV 283 (434)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST--TCCCTTEEEEEEEC
T ss_pred eEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc--cccccccceEEEEe
Confidence 99999999999999999999999875 578999999999998853 2233444332221 23455778877765
Q ss_pred h------hHHHHhhcCCceEEEEEcccc
Q 006737 610 F------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 610 ~------~l~~~~k~~~~~~LVFcnT~s 631 (633)
. .+..........+||||+|+.
T Consensus 284 ~~~~k~~~l~~~l~~~~~~~lVF~~t~~ 311 (434)
T 2db3_A 284 NKYAKRSKLIEILSEQADGTIVFVETKR 311 (434)
T ss_dssp CGGGHHHHHHHHHHHCCTTEEEECSSHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEeCcH
Confidence 3 222222333445999999974
No 2
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=7.5e-36 Score=311.75 Aligned_cols=198 Identities=30% Similarity=0.419 Sum_probs=173.8
Q ss_pred cCCCCCcccccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCCchhhhHHHHHHHHHHhcC
Q 006737 369 KREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATS 446 (633)
Q Consensus 369 ~~~~~p~~~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~g--rDvLv~ApTGSGKTlaylLPiL~~l~~~~~ 446 (633)
...+.|..+..+|++++|++.++++|..+||..||++|.++||.++.| +|++++||||||||++|++|+++++....
T Consensus 82 ~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~- 160 (300)
T 3fmo_B 82 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN- 160 (300)
T ss_dssp SSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS-
T ss_pred CCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC-
Confidence 345566677889999999999999999999999999999999999998 99999999999999999999998874332
Q ss_pred CCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhccc
Q 006737 447 SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS 526 (633)
Q Consensus 447 ~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~ 526 (633)
.++++|||+|||+||.|+++.+..+.....++.+.+++|+....... ...++||||||++|++++.+..
T Consensus 161 -------~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~TP~~l~~~l~~~~ 229 (300)
T 3fmo_B 161 -------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLK 229 (300)
T ss_dssp -------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTTC
T ss_pred -------CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----cCCCCEEEECHHHHHHHHHhcC
Confidence 24579999999999999999999998877788999999987754322 3457999999999999996532
Q ss_pred CcccccCCeeEEEEecccccCC-cChHHHHHHHHHHCCCCCcEEEEeccCChhhh
Q 006737 527 GLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580 (633)
Q Consensus 527 ~~~~~Ls~l~~LVIDEAD~Lld-~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~ 580 (633)
.+.+.++++|||||||+|++ .+|...+..|+..+++.+|+|+||||+++.+.
T Consensus 230 --~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~ 282 (300)
T 3fmo_B 230 --FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVW 282 (300)
T ss_dssp --CCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHH
T ss_pred --CCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHH
Confidence 35688999999999999997 78999999999999999999999999999863
No 3
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.7e-34 Score=288.15 Aligned_cols=195 Identities=34% Similarity=0.496 Sum_probs=173.5
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
+..+|.++++++.++++|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|++..+...... ....++
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~---~~~~~~ 103 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL---ERGDGP 103 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC---CTTCCC
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc---ccCCCC
Confidence 34679999999999999999999999999999999999999999999999999999999999988754321 112356
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
++|||+||++|+.|+++.+..++... ++.+.+++|+.....+...+..+ ++|+|+||++|.+++... ...+.+++
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~~---~~~~~~~~ 178 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLECG---KTNLRRTT 178 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHC-CSEEEECHHHHHHHHHHT---SCCCTTCC
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHcC---CCCccccc
Confidence 79999999999999999999998766 78999999998877766666554 799999999999999765 35688999
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+|||||||++++++|...+..|+..+++++|+++||||+|+.+
T Consensus 179 ~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~ 221 (242)
T 3fe2_A 179 YLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 221 (242)
T ss_dssp EEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHH
T ss_pred EEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHH
Confidence 9999999999999999999999999999999999999999985
No 4
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.1e-33 Score=271.95 Aligned_cols=190 Identities=35% Similarity=0.590 Sum_probs=168.9
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
.+|+++++++.++++|.++||..|+++|.++++.+++++|+++++|||+|||++|++|+++.+.... .++++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~ 74 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK--------DNIQA 74 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS--------CSCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC--------CCeeE
Confidence 4699999999999999999999999999999999999999999999999999999999998764321 23579
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEE
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~L 538 (633)
|||+||++|+.|+++.+..+....+++.+..++|+.....+...+. ..++|+|+||++|..++... ...+.++++|
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~l 150 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPGRILDLIKKG---VAKVDHVQMI 150 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT-SCCSEEEECHHHHHHHHHTT---CSCCTTCCEE
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC-CCCCEEEeCHHHHHHHHHcC---CcCcccCCEE
Confidence 9999999999999999999987766788999999988766555554 45799999999999998765 3568899999
Q ss_pred EEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh
Q 006737 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580 (633)
Q Consensus 539 VIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~ 580 (633)
||||||++++.+|...+..++..+++.+|+++||||+++.+.
T Consensus 151 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~ 192 (206)
T 1vec_A 151 VLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQ 192 (206)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHH
T ss_pred EEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHH
Confidence 999999999999999999999999999999999999998853
No 5
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=277.99 Aligned_cols=196 Identities=31% Similarity=0.460 Sum_probs=163.0
Q ss_pred cccCccc-cCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCC
Q 006737 377 SQKRFDE-CGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPP 455 (633)
Q Consensus 377 ~~~~F~e-l~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~ 455 (633)
+..+|.+ +++++.++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+....... ....+
T Consensus 17 p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~--~~~~~ 94 (228)
T 3iuy_A 17 PTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR--EQRNG 94 (228)
T ss_dssp CCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-----------CC
T ss_pred ChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh--hccCC
Confidence 3456888 79999999999999999999999999999999999999999999999999999998875432111 11234
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCe
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l 535 (633)
+++|||+||++||.|+++.+..+. ..++.+.+++|+.....+...+.. +++|+|+||++|.+++... ...+.++
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~---~~~~~~~ 168 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYS--YKGLKSICIYGGRNRNGQIEDISK-GVDIIIATPGRLNDLQMNN---SVNLRSI 168 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHC--CTTCCEEEECC------CHHHHHS-CCSEEEECHHHHHHHHHTT---CCCCTTC
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhc--ccCceEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcC---CcCcccc
Confidence 679999999999999999999985 237889999999887766665554 4799999999999988765 3568899
Q ss_pred eEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh
Q 006737 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580 (633)
Q Consensus 536 ~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~ 580 (633)
++|||||||++++++|...+..++..+++++|+++||||+++.+.
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 213 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVR 213 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHH
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHH
Confidence 999999999999999999999999999999999999999999853
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=293.74 Aligned_cols=247 Identities=31% Similarity=0.458 Sum_probs=192.2
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCC----------
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSS---------- 447 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~---------- 447 (633)
..+|+++++++.++++|..+||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+......
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 4569999999999999999999999999999999999999999999999999999999999988765321
Q ss_pred CCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccC
Q 006737 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527 (633)
Q Consensus 448 ~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~ 527 (633)
.......++++|||+||++||.|+++.+..++... ++.+..++|+.....+...+.. +++|+|+||++|..++...
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~-- 169 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLER-GCHLLVATPGRLVDMMERG-- 169 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTT-CCSEEEECHHHHHHHHHTT--
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhC-CCCEEEEChHHHHHHHHcC--
Confidence 00011123579999999999999999999987654 7889999999887766666654 4799999999999999765
Q ss_pred cccccCCeeEEEEecccccCCcChHHHHHHHHHH--CCC--CCcEEEEeccCChhhh-----ccccceEeeecccccccc
Q 006737 528 LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDC--LPR--RRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVET 598 (633)
Q Consensus 528 ~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~--lpk--~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~ 598 (633)
...+..+++|||||||++++++|...+..++.. ++. .+|+++||||+++.+. +...+..+.... ....
T Consensus 170 -~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 246 (417)
T 2i4i_A 170 -KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR--VGST 246 (417)
T ss_dssp -SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------C
T ss_pred -CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC--CCCC
Confidence 356889999999999999999999999999884 333 6899999999998742 122233332211 1234
Q ss_pred CccceEEEeehh-------hHHHHhhc-CCceEEEEEcccc
Q 006737 599 PVKVSKYNIYVF-------VLVLSIKI-QAFYIICFVYTIS 631 (633)
Q Consensus 599 ~~~V~q~~i~v~-------~l~~~~k~-~~~~~LVFcnT~s 631 (633)
..++.+.++.+. +....... ...++||||+|+.
T Consensus 247 ~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~ 287 (417)
T 2i4i_A 247 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKK 287 (417)
T ss_dssp CSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHH
T ss_pred ccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 556777777653 12222222 4568999999975
No 7
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=7e-33 Score=276.73 Aligned_cols=189 Identities=34% Similarity=0.523 Sum_probs=167.7
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
..+|+++++++.++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+.... .+.+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------~~~~ 94 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN--------LSTQ 94 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS--------CSCC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCce
Confidence 45699999999999999999999999999999999999999999999999999999999998764332 2357
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+|||+||++|+.|+++.+..+.....++.+.+++|+.....+...+. .++|+|+||++|.+++... ...+.++++
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~Iiv~Tp~~l~~~~~~~---~~~~~~~~~ 169 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK--KCHIAVGSPGRIKQLIELD---YLNPGSIRL 169 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT--SCSEEEECHHHHHHHHHTT---SSCGGGCCE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc--CCCEEEECHHHHHHHHhcC---CcccccCCE
Confidence 99999999999999999999987666889999999988765555443 4799999999999998765 356789999
Q ss_pred EEEecccccCCcC-hHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 538 LVLDEADHLLDLG-FRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 538 LVIDEAD~Lld~g-f~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
|||||||++++++ |...+..|+..++..+|+++||||+++++
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~ 212 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFL 212 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHH
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHH
Confidence 9999999999997 99999999999999999999999999885
No 8
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=307.13 Aligned_cols=246 Identities=27% Similarity=0.349 Sum_probs=172.7
Q ss_pred CCCCCcccccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCCchhhhHHHHHHHHHHhcCC
Q 006737 370 REEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSS 447 (633)
Q Consensus 370 ~~~~p~~~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~g--rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~ 447 (633)
..+.|..+..+|.+++|++.++++|.++||..|+++|.++|+.++.+ +|+|++||||||||++|++|+++.+....
T Consensus 83 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-- 160 (479)
T 3fmp_B 83 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-- 160 (479)
T ss_dssp STTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS--
T ss_pred CCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC--
Confidence 44556667788999999999999999999999999999999999997 89999999999999999999987764322
Q ss_pred CCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccC
Q 006737 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527 (633)
Q Consensus 448 ~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~ 527 (633)
.++++|||+||++||.|+++.+..+.....++.+.++.++....... ...++|+|+||++|++++.+..
T Consensus 161 ------~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~- 229 (479)
T 3fmp_B 161 ------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLK- 229 (479)
T ss_dssp ------CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSC-
T ss_pred ------CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc----cCCCCEEEECchHHHHHHHhcC-
Confidence 23579999999999999999999998877788888888887654321 2346999999999999996542
Q ss_pred cccccCCeeEEEEecccccCC-cChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCcc
Q 006737 528 LSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVK 601 (633)
Q Consensus 528 ~~~~Ls~l~~LVIDEAD~Lld-~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~ 601 (633)
...+.++.+|||||||++++ .+|...+..++..++..+|+|+||||+++.+. ....+..+.... .......
T Consensus 230 -~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~ 306 (479)
T 3fmp_B 230 -FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDT 306 (479)
T ss_dssp -CCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------
T ss_pred -CcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccc--cccCcCC
Confidence 35578999999999999987 68999999999999999999999999999852 222333333221 1234456
Q ss_pred ceEEEeehh--------hHHHHhhcCCceEEEEEcccc
Q 006737 602 VSKYNIYVF--------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 602 V~q~~i~v~--------~l~~~~k~~~~~~LVFcnT~s 631 (633)
+.|.++.+. +..........++||||+|+.
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~ 344 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRK 344 (479)
T ss_dssp --------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHH
Confidence 666666553 111122334468999999975
No 9
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.5e-33 Score=282.24 Aligned_cols=196 Identities=38% Similarity=0.616 Sum_probs=168.0
Q ss_pred cccCccccC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCC
Q 006737 377 SQKRFDECG--ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP 454 (633)
Q Consensus 377 ~~~~F~el~--L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~ 454 (633)
...+|++++ +++.++++|.++||..|+++|.++++.++.|+|++++||||||||++|++|+++.+...... ...
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~----~~~ 125 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM----PRN 125 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC----GGG
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc----ccC
Confidence 345678887 99999999999999999999999999999999999999999999999999999998764321 112
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCC
Q 006737 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (633)
Q Consensus 455 ~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~ 534 (633)
+.++|||+||++||.|+++.+..++... ++.+.+++|+.....+...+..+ ++|+|+||++|.+++.... ...+.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~~~~~~--~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNG-INIIVATPGRLLDHMQNTP--GFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHC-CSEEEECHHHHHHHHHHCT--TCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCC-CCEEEEcHHHHHHHHHccC--Cccccc
Confidence 4579999999999999999999998755 78889999998877666666554 7999999999999887653 245789
Q ss_pred eeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh
Q 006737 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580 (633)
Q Consensus 535 l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~ 580 (633)
+++|||||||++++++|...+..|+..+++.+|+|+||||+++.+.
T Consensus 202 l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~ 247 (262)
T 3ly5_A 202 LQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVE 247 (262)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHH
T ss_pred CCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHH
Confidence 9999999999999999999999999999999999999999999863
No 10
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=5.9e-33 Score=280.62 Aligned_cols=198 Identities=37% Similarity=0.580 Sum_probs=169.0
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCC-CCCCCCC
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSS-TTQLVPP 455 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~-~~~~~~~ 455 (633)
+..+|+++++++.++++|..+||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+....... ......+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 456799999999999999999999999999999999999999999999999999999999999887543210 0011234
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCe
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l 535 (633)
+++|||+||++|+.|+++.+..+.... ++.+..++|+.....+...+.. +++|+|+||++|.+++... ...+.++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~---~~~~~~~ 175 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQM-GCHLLVATPGRLVDFIEKN---KISLEFC 175 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSS-CCSEEEECHHHHHHHHHTT---SBCCTTC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCC-CCCEEEECHHHHHHHHHcC---CCChhhC
Confidence 679999999999999999999987654 6888999999887766665544 5799999999999999765 3568899
Q ss_pred eEEEEecccccCCcChHHHHHHHHHH--CCC--CCcEEEEeccCChhh
Q 006737 536 KMLVLDEADHLLDLGFRKDVENIVDC--LPR--RRQSLLFSATMPKEL 579 (633)
Q Consensus 536 ~~LVIDEAD~Lld~gf~~~l~~Il~~--lpk--~~Q~IlfSATl~~el 579 (633)
++|||||||++++++|...+..|+.. ++. .+|+++||||+++++
T Consensus 176 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~ 223 (253)
T 1wrb_A 176 KYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEI 223 (253)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHH
T ss_pred CEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHH
Confidence 99999999999999999999999995 444 689999999999985
No 11
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=273.47 Aligned_cols=194 Identities=41% Similarity=0.644 Sum_probs=168.2
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
...+|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+...... ...++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~----~~~~~ 98 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT----STDGL 98 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC----GGGCC
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc----ccCCc
Confidence 34679999999999999999999999999999999999999999999999999999999999988764221 12245
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
++|||+||++|+.|+++.+..++... ++.+.+++|+.....+...+. +++|+|+||++|.+++.... ...+.+++
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~~~iiv~Tp~~l~~~l~~~~--~~~~~~~~ 173 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERIN--NINILVCTPGRLLQHMDETV--SFHATDLQ 173 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHHT--TCSEEEECHHHHHHHHHHCS--SCCCTTCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhCC--CCCEEEECHHHHHHHHHhcC--Cccccccc
Confidence 79999999999999999999987654 688999999988776555553 47999999999999887542 24578999
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+|||||||++++++|...+..++..+++.+|+++||||+++.+
T Consensus 174 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 216 (236)
T 2pl3_A 174 MLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSV 216 (236)
T ss_dssp EEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHH
T ss_pred EEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHH
Confidence 9999999999999999999999999999999999999999985
No 12
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=4e-33 Score=275.87 Aligned_cols=191 Identities=35% Similarity=0.563 Sum_probs=166.3
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
.++|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.... .+++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--------~~~~ 74 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER--------AEVQ 74 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS--------CSCC
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc--------CCce
Confidence 35699999999999999999999999999999999999999999999999999999999998764321 2357
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCC---CceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCC
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHD---GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~---~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~ 534 (633)
+|||+||++|+.|+++.+..+..... ++.+.+++|+.........+. .+++|+|+||++|.+++... ...+..
T Consensus 75 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~---~~~~~~ 150 (219)
T 1q0u_A 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN-VQPHIVIGTPGRINDFIREQ---ALDVHT 150 (219)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCS-SCCSEEEECHHHHHHHHHTT---CCCGGG
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcC-CCCCEEEeCHHHHHHHHHcC---CCCcCc
Confidence 99999999999999999999986543 578888899877654443333 35799999999999998765 356789
Q ss_pred eeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh
Q 006737 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580 (633)
Q Consensus 535 l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~ 580 (633)
+++|||||||++++++|...+..++..+++.+|+++||||+++++.
T Consensus 151 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~ 196 (219)
T 1q0u_A 151 AHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLK 196 (219)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGH
T ss_pred ceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHH
Confidence 9999999999999999999999999999999999999999999853
No 13
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=5.7e-33 Score=278.91 Aligned_cols=190 Identities=31% Similarity=0.538 Sum_probs=159.9
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
..+|+++++++.++++|.++||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+.... .+.+
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~--------~~~~ 100 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF--------KETQ 100 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS--------CSCC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCce
Confidence 46799999999999999999999999999999999999999999999999999999999998764321 2357
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+|||+||++|+.|+++.+..++... ++.+..++|+.....+...+..+.++|+|+||++|.+++... ...+..+++
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~---~~~~~~~~~ 176 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR---YLSPKWIKM 176 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTT---SSCSTTCCE
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC---CcCcccCcE
Confidence 9999999999999999999987654 678888899887776666666666899999999999998765 356788999
Q ss_pred EEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
|||||||++++++|...+..++..++..+|+|+||||+++.+
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~ 218 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDV 218 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHH
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHH
Confidence 999999999999999999999999999999999999999885
No 14
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.6e-32 Score=292.79 Aligned_cols=240 Identities=28% Similarity=0.440 Sum_probs=193.2
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
...+|+++++++.++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+... ..+.
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~ 106 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--------VRET 106 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--------SCSC
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc--------cCCc
Confidence 34579999999999999999999999999999999999999999999999999999999999775322 1234
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
++|||+||++|+.|+++.+..+.... ++.+..++|+.....+...+.. +++|+|+||++|.+++... ...+..++
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~ivv~Tp~~l~~~l~~~---~~~~~~~~ 181 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRR---SLRTRAIK 181 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHH-CCSEEEECHHHHHHHHHTT---SSCCTTCC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhc-CCCEEEcCHHHHHHHHHhC---CccHhhee
Confidence 79999999999999999999987654 7889999999887766666554 4799999999999999765 35678899
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhcc-----ccceEeeeccccccccCccceEEEeehh-
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLK-----REHTYIDTVGLGSVETPVKVSKYNIYVF- 610 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l~-----~~~~~i~~~~~~~~~~~~~V~q~~i~v~- 610 (633)
+|||||||++++++|...+..++..+++..|+++||||+++.+... ..+..+.. .........+.+.++.+.
T Consensus 182 ~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 259 (410)
T 2j0s_A 182 MLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV--KRDELTLEGIKQFFVAVER 259 (410)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECC--CGGGCSCTTEEEEEEEESS
T ss_pred EEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEe--cCccccCCCceEEEEEeCc
Confidence 9999999999999999999999999999999999999999875321 22222211 111234456777776543
Q ss_pred -------hHHHHhhcCCceEEEEEcccc
Q 006737 611 -------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 -------~l~~~~k~~~~~~LVFcnT~s 631 (633)
+..........++||||+|+.
T Consensus 260 ~~~k~~~l~~~~~~~~~~~~lVf~~~~~ 287 (410)
T 2j0s_A 260 EEWKFDTLCDLYDTLTITQAVIFCNTKR 287 (410)
T ss_dssp TTHHHHHHHHHHHHHTSSEEEEECSSHH
T ss_pred HHhHHHHHHHHHHhcCCCcEEEEEcCHH
Confidence 222233445569999999975
No 15
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=278.79 Aligned_cols=191 Identities=38% Similarity=0.638 Sum_probs=169.8
Q ss_pred cccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
...+|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+..... ++
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~--------~~ 112 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ--------RL 112 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC--------SS
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC--------Cc
Confidence 3467999999999999999999999999999999999999999999999999999999999998876532 34
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
++|||+||++|+.|+++.+..++... ++.+.+++|+.....+...+.. +++|+|+||++|.+++.... ...+..++
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~--~~~l~~~~ 188 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAK-KPHIIIATPGRLIDHLENTK--GFNLRALK 188 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHT-CCSEEEECHHHHHHHHHHST--TCCCTTCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCC--CcCccccC
Confidence 69999999999999999999987755 7889999999876655555543 57999999999999987642 24578999
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+|||||||++++++|...+..++..+++.+|+++||||+++.+
T Consensus 189 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v 231 (249)
T 3ber_A 189 YLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKV 231 (249)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHH
T ss_pred EEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHH
Confidence 9999999999999999999999999999999999999999985
No 16
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.3e-32 Score=270.05 Aligned_cols=191 Identities=33% Similarity=0.560 Sum_probs=169.6
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
..+|+++++++.++++|.++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+... ..+++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--------~~~~~ 84 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQVS 84 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------TTCCC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--------CCCEE
Confidence 3569999999999999999999999999999999999999999999999999999999999775321 12357
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+|||+||++|+.|+++.+..+....+++.+.+++|+.....+...+....++|+|+||++|..++... ...+.++++
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~ 161 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKH 161 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT---SSCCTTCCE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC---CCCcccCCE
Confidence 99999999999999999999987766889999999988777777776666899999999999998765 356889999
Q ss_pred EEEecccccCC-cChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 538 LVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 538 LVIDEAD~Lld-~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
|||||||++++ .+|...+..++..+++.+|+++||||+++.+
T Consensus 162 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 204 (220)
T 1t6n_A 162 FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI 204 (220)
T ss_dssp EEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTT
T ss_pred EEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHH
Confidence 99999999987 5789999999999999999999999999885
No 17
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.98 E-value=4.3e-32 Score=268.44 Aligned_cols=188 Identities=34% Similarity=0.569 Sum_probs=160.3
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
..+|+++++++.+++.|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.... .+++
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~--------~~~~ 84 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQ 84 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC--------CSCC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC--------CCce
Confidence 45799999999999999999999999999999999999999999999999999999999998764322 2357
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+|||+||++|+.|+++.+..++... ++.+..++|+.....+...+.. ++|+|+||++|.+++... ...+.++++
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~--~~iiv~Tp~~l~~~~~~~---~~~~~~~~~ 158 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRR---RFRTDKIKM 158 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTT--CSEEEECHHHHHHHHHTT---SSCCTTCCE
T ss_pred EEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCC--CCEEEECHHHHHHHHHhC---CcchhhCcE
Confidence 9999999999999999999987654 7888999998876655544433 799999999999998765 356789999
Q ss_pred EEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
|||||||++++++|...+..++..+++.+|+++||||+++.+
T Consensus 159 iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~ 200 (224)
T 1qde_A 159 FILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDV 200 (224)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHH
T ss_pred EEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHH
Confidence 999999999999999999999999999999999999999985
No 18
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.98 E-value=6.2e-32 Score=263.46 Aligned_cols=188 Identities=38% Similarity=0.581 Sum_probs=165.4
Q ss_pred CccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 006737 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (633)
Q Consensus 380 ~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vL 459 (633)
+|+++++++.+++.|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+..... ...++++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-----~~~~~~~l 76 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-----RGRKPRAL 76 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-----TTCCCSEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-----cCCCCcEE
Confidence 5999999999999999999999999999999999999999999999999999999999988753211 12346799
Q ss_pred EEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEE
Q 006737 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (633)
Q Consensus 460 ILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LV 539 (633)
|++||++|+.|+++.+..++. .+.+..++|+.........+.. +++|+|+||++|..++... ...+.++++||
T Consensus 77 il~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~---~~~~~~~~~iV 149 (207)
T 2gxq_A 77 VLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLR-GADAVVATPGRALDYLRQG---VLDLSRVEVAV 149 (207)
T ss_dssp EECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHH-CCSEEEECHHHHHHHHHHT---SSCCTTCSEEE
T ss_pred EEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhC-CCCEEEECHHHHHHHHHcC---CcchhhceEEE
Confidence 999999999999999998865 4778889999887665555544 4799999999999998765 35688999999
Q ss_pred EecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 540 LDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 540 IDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
|||||++++++|...+..++..+++.+|+++||||+++.+
T Consensus 150 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 189 (207)
T 2gxq_A 150 LDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWA 189 (207)
T ss_dssp EESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHH
T ss_pred EEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHH
Confidence 9999999999999999999999999999999999999875
No 19
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.98 E-value=2.2e-31 Score=284.27 Aligned_cols=246 Identities=27% Similarity=0.349 Sum_probs=195.2
Q ss_pred CCCCCcccccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCCchhhhHHHHHHHHHHhcCC
Q 006737 370 REEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSS 447 (633)
Q Consensus 370 ~~~~p~~~~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~g--rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~ 447 (633)
....|+....+|+++++++.++++|.++||..|+++|.++++.++.+ +++++++|||+|||++|++|+++.+....
T Consensus 16 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-- 93 (412)
T 3fht_A 16 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-- 93 (412)
T ss_dssp CTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS--
T ss_pred cCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC--
Confidence 34556667788999999999999999999999999999999999997 89999999999999999999998764332
Q ss_pred CCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccC
Q 006737 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527 (633)
Q Consensus 448 ~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~ 527 (633)
.++++|||+||++|+.|+++.+..+....+++.+....++....... ...++|+|+||++|.+++....
T Consensus 94 ------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~- 162 (412)
T 3fht_A 94 ------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLK- 162 (412)
T ss_dssp ------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSC-
T ss_pred ------CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCCEEEECchHHHHHHHhcC-
Confidence 23479999999999999999999998877788898888887654321 3357999999999999986532
Q ss_pred cccccCCeeEEEEecccccCC-cChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCcc
Q 006737 528 LSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVK 601 (633)
Q Consensus 528 ~~~~Ls~l~~LVIDEAD~Lld-~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~ 601 (633)
...+.++++|||||||++++ .++...+..++..++..+|+++||||+++.+. ....+..+.... .......
T Consensus 163 -~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 239 (412)
T 3fht_A 163 -FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDT 239 (412)
T ss_dssp -SSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG--GGSSCTT
T ss_pred -CcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecc--ccccccC
Confidence 34578999999999999987 67999999999999999999999999999752 122223332211 2334556
Q ss_pred ceEEEeehh--------hHHHHhhcCCceEEEEEcccc
Q 006737 602 VSKYNIYVF--------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 602 V~q~~i~v~--------~l~~~~k~~~~~~LVFcnT~s 631 (633)
+.+.++.+. +..........++||||+|+.
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~ 277 (412)
T 3fht_A 240 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRK 277 (412)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHH
T ss_pred ceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHH
Confidence 777776653 222333445679999999974
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.98 E-value=1.6e-31 Score=283.72 Aligned_cols=242 Identities=29% Similarity=0.441 Sum_probs=193.5
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
...|+++++++.++++|.++||..|+++|.++++.++.++|+++++|||+|||++|++|++..+.... .+.+
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------~~~~ 78 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVS 78 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT--------TCCC
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC--------CCee
Confidence 35699999999999999999999999999999999999999999999999999999999987753221 2346
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+|||+||++|+.|+++.+..+....+++.+..++|+.........+..+.++|+|+||++|..++... ...+.++++
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~ 155 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKH 155 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT---SSCCTTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CccccccCE
Confidence 99999999999999999999987777899999999988777777777666899999999999988765 356889999
Q ss_pred EEEecccccCCc-ChHHHHHHHHHHCCCCCcEEEEeccCChhhhc-----cccceEeeeccccccccCccceEEEeehh-
Q 006737 538 LVLDEADHLLDL-GFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKVSKYNIYVF- 610 (633)
Q Consensus 538 LVIDEAD~Lld~-gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l-----~~~~~~i~~~~~~~~~~~~~V~q~~i~v~- 610 (633)
|||||||+++++ ++...+..++..+++..|+++||||+++.+.. ...+..+... .........+.+.++.+.
T Consensus 156 vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 234 (391)
T 1xti_A 156 FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVD-DETKLTLHGLQQYYVKLKD 234 (391)
T ss_dssp EEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECC-CCCCCCCTTCEEEEEECCG
T ss_pred EEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEec-CccccCcccceEEEEEcCc
Confidence 999999999984 78899999999999999999999999987421 1222222111 111223445667666543
Q ss_pred ------hHHHHhhcCCceEEEEEcccc
Q 006737 611 ------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ------~l~~~~k~~~~~~LVFcnT~s 631 (633)
+..........++||||+|+.
T Consensus 235 ~~~~~~l~~~l~~~~~~~~lvf~~~~~ 261 (391)
T 1xti_A 235 NEKNRKLFDLLDVLEFNQVVIFVKSVQ 261 (391)
T ss_dssp GGHHHHHHHHHHHSCCSEEEEECSCHH
T ss_pred hhHHHHHHHHHHhcCCCcEEEEeCcHH
Confidence 222333445679999999975
No 21
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=2.9e-31 Score=283.85 Aligned_cols=240 Identities=28% Similarity=0.450 Sum_probs=195.4
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
..+|+++++++.+++.|.++||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+.... .+.+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~ 110 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--------KATQ 110 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS--------CSCC
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC--------Ccee
Confidence 35799999999999999999999999999999999999999999999999999999999998764321 2346
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+|||+||++|+.|+++.+..++... ++.+..++|+.........+....++|+|+||++|.+++... ...+..+++
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~~ 186 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR---YLSPKYIKM 186 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT---SSCSTTCCE
T ss_pred EEEEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcccccCcE
Confidence 9999999999999999999987655 788888999988877777777677899999999999999775 356788999
Q ss_pred EEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhc-----cccceEeeeccccccccCccceEEEeehh--
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKVSKYNIYVF-- 610 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l-----~~~~~~i~~~~~~~~~~~~~V~q~~i~v~-- 610 (633)
|||||||++++++|...+..++..+++.+|+|+||||+++.+.. ...+..+... ........+.+.++.+.
T Consensus 187 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 264 (414)
T 3eiq_A 187 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK--KEELTLEGIRQFYINVERE 264 (414)
T ss_dssp EEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCC--CCCCCTTSCCEEEEECSSS
T ss_pred EEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEec--CCccCCCCceEEEEEeChH
Confidence 99999999999999999999999999999999999999987431 1222222211 12234456777776543
Q ss_pred ------hHHHHhhcCCceEEEEEcccc
Q 006737 611 ------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ------~l~~~~k~~~~~~LVFcnT~s 631 (633)
+..........++||||+|+.
T Consensus 265 ~~~~~~l~~~~~~~~~~~~lvf~~~~~ 291 (414)
T 3eiq_A 265 EWKLDTLCDLYETLTITQAVIFINTRR 291 (414)
T ss_dssp TTHHHHHHHHHHSSCCSSCEEECSCHH
T ss_pred HhHHHHHHHHHHhCCCCcEEEEeCCHH
Confidence 222333445569999999974
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=2.4e-31 Score=300.43 Aligned_cols=240 Identities=31% Similarity=0.450 Sum_probs=186.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcc
Q 006737 386 ISPLTIKALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (633)
Q Consensus 386 L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il--~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvP 463 (633)
|++.++++|..+||..|+|+|.++|+.++ .++|+|++||||+|||+||++|+++.+...... ...++++|||+|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~----~~~~~~~lvl~P 103 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----SQYMVKAVIVAP 103 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----STTSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc----ccCCCeEEEEcc
Confidence 99999999999999999999999999999 788999999999999999999999998876432 122467999999
Q ss_pred cHHHHHHHHHHHHHHHhc---CCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEE
Q 006737 464 TRELASQIAAEAIALLKN---HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540 (633)
Q Consensus 464 TReLa~Qi~~~l~~l~~~---~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVI 540 (633)
|++||.|+++.+..++.. ...+.+..++|+.....+...+....++|||+||++|.+++.... ...+..+++|||
T Consensus 104 tr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~~~~~lVi 181 (579)
T 3sqw_A 104 TRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKVL 181 (579)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc--ccccccCCEEEE
Confidence 999999999999998743 235678889999888877777766668999999999999987542 245788999999
Q ss_pred ecccccCCcChHHHHHHHHHHCCC-------CCcEEEEeccCChhhhc-----ccc--ceEeeeccccccccCccceEEE
Q 006737 541 DEADHLLDLGFRKDVENIVDCLPR-------RRQSLLFSATMPKELVL-----KRE--HTYIDTVGLGSVETPVKVSKYN 606 (633)
Q Consensus 541 DEAD~Lld~gf~~~l~~Il~~lpk-------~~Q~IlfSATl~~el~l-----~~~--~~~i~~~~~~~~~~~~~V~q~~ 606 (633)
||||+|++++|...+..|+..++. .+|+++||||+++.+.. ... ...+.............+.+.+
T Consensus 182 DEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (579)
T 3sqw_A 182 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261 (579)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred EChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEE
Confidence 999999999999999999876642 67999999999987421 111 1222222222233444566666
Q ss_pred eehh-----------hHH-HHh-hcCCceEEEEEcccc
Q 006737 607 IYVF-----------VLV-LSI-KIQAFYIICFVYTIS 631 (633)
Q Consensus 607 i~v~-----------~l~-~~~-k~~~~~~LVFcnT~s 631 (633)
+.+. .+. ... .....++||||+|+.
T Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~ 299 (579)
T 3sqw_A 262 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVK 299 (579)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHH
T ss_pred EEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHH
Confidence 5442 111 111 144579999999974
No 23
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=2.7e-31 Score=297.82 Aligned_cols=240 Identities=32% Similarity=0.460 Sum_probs=184.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcc
Q 006737 386 ISPLTIKALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463 (633)
Q Consensus 386 L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il--~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvP 463 (633)
|++.++++|.++||..|+|+|.++|+.++ .++|+|++||||||||++|++|+++.+....... ..++++|||+|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~----~~~~~~lil~P 154 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS----QYMVKAVIVAP 154 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS----TTSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccc----cCCeeEEEEcC
Confidence 99999999999999999999999999999 6789999999999999999999999998764321 22457999999
Q ss_pred cHHHHHHHHHHHHHHHhcC---CCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEE
Q 006737 464 TRELASQIAAEAIALLKNH---DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540 (633)
Q Consensus 464 TReLa~Qi~~~l~~l~~~~---~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVI 540 (633)
|++||.|+++.+..++... ..+.+..++|+.....+...+...+++|||+||++|.+++.+.. ...+..+++|||
T Consensus 155 tr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lVi 232 (563)
T 3i5x_A 155 TRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKVL 232 (563)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEEE
T ss_pred cHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc--ccccccceEEEE
Confidence 9999999999999986532 35678889999887777777766668999999999999987542 235788999999
Q ss_pred ecccccCCcChHHHHHHHHHHCC-------CCCcEEEEeccCChhhhc-----ccc--ceEeeeccccccccCccceEEE
Q 006737 541 DEADHLLDLGFRKDVENIVDCLP-------RRRQSLLFSATMPKELVL-----KRE--HTYIDTVGLGSVETPVKVSKYN 606 (633)
Q Consensus 541 DEAD~Lld~gf~~~l~~Il~~lp-------k~~Q~IlfSATl~~el~l-----~~~--~~~i~~~~~~~~~~~~~V~q~~ 606 (633)
||||+|++++|...+..|+..++ ..+|+|+||||+++.+.. ... ..++.............+.+.+
T Consensus 233 DEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (563)
T 3i5x_A 233 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 312 (563)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred eCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEE
Confidence 99999999999999999887653 368999999999987421 111 1222222222233444566666
Q ss_pred eehh--------hH---H-HH-hhcCCceEEEEEcccc
Q 006737 607 IYVF--------VL---V-LS-IKIQAFYIICFVYTIS 631 (633)
Q Consensus 607 i~v~--------~l---~-~~-~k~~~~~~LVFcnT~s 631 (633)
+.+. .+ . .. ......++||||+|+.
T Consensus 313 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~ 350 (563)
T 3i5x_A 313 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVK 350 (563)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHH
T ss_pred EECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHH
Confidence 5442 11 1 11 1145679999999974
No 24
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=8.3e-32 Score=270.62 Aligned_cols=194 Identities=27% Similarity=0.433 Sum_probs=161.1
Q ss_pred ccCcccc----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCC
Q 006737 378 QKRFDEC----GISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLV 453 (633)
Q Consensus 378 ~~~F~el----~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~ 453 (633)
..+|+++ ++++.++++|.++||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+.... .
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-------~ 96 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA-------N 96 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC-------S
T ss_pred ccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc-------c
Confidence 3457766 8999999999999999999999999999999999999999999999999999998874321 1
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 454 PPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 454 ~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
.++++|||+||++|+.|+++.+..++... ++.+.+++|+.............+++|+|+||++|..++..... ...+.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~~~~ 174 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPP-GIDLA 174 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSC-SCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCC-Ccccc
Confidence 24579999999999999999999997654 67777777765443333333445689999999999999976532 25688
Q ss_pred CeeEEEEecccccCC---cChHHHHHHHHHHCC-CCCcEEEEeccCChhhh
Q 006737 534 GLKMLVLDEADHLLD---LGFRKDVENIVDCLP-RRRQSLLFSATMPKELV 580 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld---~gf~~~l~~Il~~lp-k~~Q~IlfSATl~~el~ 580 (633)
++++|||||||++++ .+|...+..++..+. ...|+++||||+++++.
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~ 225 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVE 225 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHH
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHH
Confidence 999999999999998 468999999987764 57899999999999863
No 25
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=7.5e-31 Score=280.13 Aligned_cols=238 Identities=32% Similarity=0.485 Sum_probs=188.8
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
..+|++++|++.++++|.++||..|+++|.++++.++.++++++++|||+|||++|++|++..+.... .+.+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~ 91 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL--------NKIQ 91 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc--------CCcc
Confidence 45799999999999999999999999999999999999999999999999999999999998764321 2346
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+|||+||++|+.|+++.+..++... ++.+..++|+.....+...+. ..++|+|+||++|..++... ...+.++++
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Ivv~T~~~l~~~~~~~---~~~~~~~~~ 166 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLN-ETVHILVGTPGRVLDLASRK---VADLSDCSL 166 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTT-SCCSEEEECHHHHHHHHHTT---CSCCTTCCE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhc-CCCCEEEEchHHHHHHHHhC---CcccccCCE
Confidence 9999999999999999999987654 788889999887665544443 45799999999999988765 355789999
Q ss_pred EEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhc-----cccceEeeeccccccccCccceEEEeehh--
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKVSKYNIYVF-- 610 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l-----~~~~~~i~~~~~~~~~~~~~V~q~~i~v~-- 610 (633)
|||||||++++.+|...+..++..+++..|+++||||++..+.. ...+..+... .......+.+++..+.
T Consensus 167 vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 243 (400)
T 1s2m_A 167 FIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM---EELTLKGITQYYAFVEER 243 (400)
T ss_dssp EEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC---SSCBCTTEEEEEEECCGG
T ss_pred EEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEec---cccccCCceeEEEEechh
Confidence 99999999999889999999999999999999999999987421 1112222111 1223456677766543
Q ss_pred -----hHHHHhhcCCceEEEEEcccc
Q 006737 611 -----VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 -----~l~~~~k~~~~~~LVFcnT~s 631 (633)
+..........++||||+|+.
T Consensus 244 ~k~~~l~~~~~~~~~~~~lVf~~~~~ 269 (400)
T 1s2m_A 244 QKLHCLNTLFSKLQINQAIIFCNSTN 269 (400)
T ss_dssp GHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred hHHHHHHHHHhhcCCCcEEEEEecHH
Confidence 222233345579999999974
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=7.1e-31 Score=278.62 Aligned_cols=239 Identities=30% Similarity=0.455 Sum_probs=168.9
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
..+|+++++++.++++|..+||..|+++|.++++.++.++|+++++|||+|||++|++|+++.+.... .+++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~--------~~~~ 91 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQ 91 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC--------CSCC
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC--------CCCC
Confidence 35699999999999999999999999999999999999999999999999999999999998764321 2357
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+|||+||++|+.|+++.+..++... ++.+..++|+.........+. .++|+|+||++|...+... ...+.++++
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~~~i~v~T~~~l~~~~~~~---~~~~~~~~~ 165 (394)
T 1fuu_A 92 ALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQRR---RFRTDKIKM 165 (394)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHH--HCSEEEECHHHHHHHHHTT---SSCCTTCCE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcC--CCCEEEECHHHHHHHHHhC---CcchhhCcE
Confidence 9999999999999999999987654 788999999988766555554 3699999999999998765 355788999
Q ss_pred EEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh--
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF-- 610 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~-- 610 (633)
|||||||++++++|...+..++..+++..|+++||||+++.+. ....+..+.... .......+.+.++.+.
T Consensus 166 vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 243 (394)
T 1fuu_A 166 FILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK--DELTLEGIKQFYVNVEEE 243 (394)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------
T ss_pred EEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecC--ccccCCCceEEEEEcCch
Confidence 9999999999999999999999999999999999999998742 112222221111 1122334444444322
Q ss_pred ------hHHHHhhcCCceEEEEEccccC
Q 006737 611 ------VLVLSIKIQAFYIICFVYTISM 632 (633)
Q Consensus 611 ------~l~~~~k~~~~~~LVFcnT~s~ 632 (633)
+..........++||||+|+.+
T Consensus 244 ~~~~~~l~~~~~~~~~~~~lVf~~~~~~ 271 (394)
T 1fuu_A 244 EYKYECLTDLYDSISVTQAVIFCNTRRK 271 (394)
T ss_dssp ----------------------------
T ss_pred hhHHHHHHHHHhcCCCCcEEEEECCHHH
Confidence 1111222345689999999753
No 27
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.2e-30 Score=271.35 Aligned_cols=233 Identities=33% Similarity=0.538 Sum_probs=188.4
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~g-rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
..+|+++++++.++++|.++||..|+++|.++++.++++ +++++++|||+|||++|++|++..+... .+.
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---------~~~ 75 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGI 75 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---------CCC
Confidence 356999999999999999999999999999999999988 6999999999999999999998765321 234
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
++|||+||++|+.|+++.+..++... ++.+..++|+.....+...+. .++|+|+||++|..++... ...+.+++
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~--~~~iiv~T~~~l~~~~~~~---~~~~~~~~ 149 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALK--NANIVVGTPGRILDHINRG---TLNLKNVK 149 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHH--TCSEEEECHHHHHHHHHTT---CSCTTSCC
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcC--CCCEEEecHHHHHHHHHcC---CcccccCC
Confidence 69999999999999999999997654 688889999988766655554 3699999999999998765 35578999
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhc-----cccceEeeeccccccccCccceEEEeehh-
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKVSKYNIYVF- 610 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l-----~~~~~~i~~~~~~~~~~~~~V~q~~i~v~- 610 (633)
+|||||||++.+++|...+..++..+++..|+++||||++..+.. .....++. ......+.+.++.+.
T Consensus 150 ~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 223 (367)
T 1hv8_A 150 YFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIK------AKINANIEQSYVEVNE 223 (367)
T ss_dssp EEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEE------CCSSSSSEEEEEECCG
T ss_pred EEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEE------ecCCCCceEEEEEeCh
Confidence 999999999999999999999999999999999999999987421 12222221 122335666666543
Q ss_pred -----hHHHHhhcCCceEEEEEcccc
Q 006737 611 -----VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 -----~l~~~~k~~~~~~LVFcnT~s 631 (633)
.+.........++||||+|+.
T Consensus 224 ~~~~~~l~~~l~~~~~~~lvf~~~~~ 249 (367)
T 1hv8_A 224 NERFEALCRLLKNKEFYGLVFCKTKR 249 (367)
T ss_dssp GGHHHHHHHHHCSTTCCEEEECSSHH
T ss_pred HHHHHHHHHHHhcCCCcEEEEECCHH
Confidence 233334456679999999974
No 28
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=4.2e-30 Score=271.93 Aligned_cols=235 Identities=27% Similarity=0.348 Sum_probs=183.7
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCC
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPP 455 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~g--rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~ 455 (633)
..+|++++|++.++++|.++||..|+++|.++++.++.+ +++++++|||+|||++|++|++..+.... .+
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~ 75 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED--------AS 75 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC--------CS
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC--------CC
Confidence 367999999999999999999999999999999999998 89999999999999999999998764322 23
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCe
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l 535 (633)
.++|||+||++|+.|+++.+..++... ++.+..++++..... ....++|+|+||++|..++... ...+.++
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~ 146 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKN-----KQINAQVIVGTPGTVLDLMRRK---LMQLQKI 146 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTT-----SCBCCSEEEECHHHHHHHHHTT---CBCCTTC
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhh-----ccCCCCEEEEcHHHHHHHHHcC---CcccccC
Confidence 469999999999999999999987644 677777777654332 1235799999999999998765 3568899
Q ss_pred eEEEEecccccCC-cChHHHHHHHHHHCCCCCcEEEEeccCChhhhc-----cccceEeeeccccccccCccceEEEeeh
Q 006737 536 KMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKVSKYNIYV 609 (633)
Q Consensus 536 ~~LVIDEAD~Lld-~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l-----~~~~~~i~~~~~~~~~~~~~V~q~~i~v 609 (633)
++|||||||++.+ .++...+..+...+++..|+++||||+++.+.. ......+.... .......+.+.+..+
T Consensus 147 ~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 224 (395)
T 3pey_A 147 KIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT--NEVNVDAIKQLYMDC 224 (395)
T ss_dssp CEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCG--GGCSCTTEEEEEEEC
T ss_pred CEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccc--cccccccccEEEEEc
Confidence 9999999999987 789999999999999999999999999987421 12222222111 123344566666654
Q ss_pred h--------hHHHHhhcCCceEEEEEcccc
Q 006737 610 F--------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 610 ~--------~l~~~~k~~~~~~LVFcnT~s 631 (633)
. +..........++||||+|+.
T Consensus 225 ~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~ 254 (395)
T 3pey_A 225 KNEADKFDVLTELYGLMTIGSSIIFVATKK 254 (395)
T ss_dssp SSHHHHHHHHHHHHTTTTSSEEEEECSCHH
T ss_pred CchHHHHHHHHHHHHhccCCCEEEEeCCHH
Confidence 2 222233345579999999974
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=9.8e-30 Score=263.79 Aligned_cols=221 Identities=30% Similarity=0.458 Sum_probs=178.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccH
Q 006737 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (633)
Q Consensus 386 L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTR 465 (633)
|++.+.++|.++||..|+++|.++++.+++++++++++|||+|||++|++|+++. +.++|||+||+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~~ 66 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPTR 66 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSSH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCCH
Confidence 5789999999999999999999999999999999999999999999999998763 13599999999
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccc
Q 006737 466 ELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545 (633)
Q Consensus 466 eLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~ 545 (633)
+|+.|+++.+..++... ++.+..++|+.........+.. ++|+|+||++|..++... ...+.++++|||||||+
T Consensus 67 ~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~i~v~T~~~l~~~~~~~---~~~~~~~~~iViDEah~ 140 (337)
T 2z0m_A 67 ELTRQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRVRN--ADIVVATPGRLLDLWSKG---VIDLSSFEIVIIDEADL 140 (337)
T ss_dssp HHHHHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHHTT--CSEEEECHHHHHHHHHTT---SCCGGGCSEEEEESHHH
T ss_pred HHHHHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhcCC--CCEEEECHHHHHHHHHcC---CcchhhCcEEEEEChHH
Confidence 99999999999987654 6788999998877665555543 799999999999988765 35578899999999999
Q ss_pred cCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhhc-----cccceEeeeccccccccCccceEEEeehh-----hHHHH
Q 006737 546 LLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVL-----KREHTYIDTVGLGSVETPVKVSKYNIYVF-----VLVLS 615 (633)
Q Consensus 546 Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~l-----~~~~~~i~~~~~~~~~~~~~V~q~~i~v~-----~l~~~ 615 (633)
+.++++...+..++..++...|+++||||+++.+.. ...+..+. ......++.+.++.+. .+...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 2z0m_A 141 MFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIE-----ACIGLANVEHKFVHVKDDWRSKVQAL 215 (337)
T ss_dssp HHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEE-----CSGGGGGEEEEEEECSSSSHHHHHHH
T ss_pred hhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeee-----cccccCCceEEEEEeChHHHHHHHHH
Confidence 999999999999999999999999999999988421 11222221 1123345566555443 33334
Q ss_pred hhcCCceEEEEEcccc
Q 006737 616 IKIQAFYIICFVYTIS 631 (633)
Q Consensus 616 ~k~~~~~~LVFcnT~s 631 (633)
......++||||+|+.
T Consensus 216 ~~~~~~~~lvf~~~~~ 231 (337)
T 2z0m_A 216 RENKDKGVIVFVRTRN 231 (337)
T ss_dssp HTCCCSSEEEECSCHH
T ss_pred HhCCCCcEEEEEcCHH
Confidence 4556679999999974
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=4.3e-29 Score=269.24 Aligned_cols=222 Identities=18% Similarity=0.186 Sum_probs=166.4
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHH
Q 006737 389 LTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (633)
Q Consensus 389 ~Ll~~L~~-~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReL 467 (633)
.+.+.+.+ .|| .|+++|.++++.++.|+|+++++|||||||++|++|++..+. .++++|||+||++|
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-----------~~~~~lil~Pt~~L 76 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTL 76 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-----------TTCCEEEEESSHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-----------CCCEEEEEECCHHH
Confidence 44555555 356 899999999999999999999999999999999999887651 12469999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEECCccc---hHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccc
Q 006737 468 ASQIAAEAIALLKNHDGIGVLTLVGGTRF---KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (633)
Q Consensus 468 a~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~---~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD 544 (633)
|.|+++.+..++. .++++..++|+... ..+...+..+.++|+|+||++|.+++.. ..+.++++|||||||
T Consensus 77 ~~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~iViDEaH 149 (414)
T 3oiy_A 77 VKQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVD 149 (414)
T ss_dssp HHHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTTCCCSEEEESCHH
T ss_pred HHHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hccccccEEEEeChH
Confidence 9999999999866 48899999999887 4455666666689999999999888763 456789999999998
Q ss_pred ccCC-----------cChHHH-HHHHHHHCC-----------CCCcEEEEecc-CChhhh--ccccceEeeecccccccc
Q 006737 545 HLLD-----------LGFRKD-VENIVDCLP-----------RRRQSLLFSAT-MPKELV--LKREHTYIDTVGLGSVET 598 (633)
Q Consensus 545 ~Lld-----------~gf~~~-l~~Il~~lp-----------k~~Q~IlfSAT-l~~el~--l~~~~~~i~~~~~~~~~~ 598 (633)
++++ ++|... +..++..++ ..+|+++|||| .|..+. +......+.. ......
T Consensus 150 ~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~--~~~~~~ 227 (414)
T 3oiy_A 150 AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV--GRLVSV 227 (414)
T ss_dssp HHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCS--SCCCCC
T ss_pred hhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCc--Cccccc
Confidence 7654 677777 788888876 78999999999 554432 1111111111 112334
Q ss_pred CccceEEEeehh---hHHHHhhcCCceEEEEEcccc
Q 006737 599 PVKVSKYNIYVF---VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 599 ~~~V~q~~i~v~---~l~~~~k~~~~~~LVFcnT~s 631 (633)
..++.+.++.+. .+.........++||||||+.
T Consensus 228 ~~~i~~~~~~~~~~~~l~~~l~~~~~~~lVF~~~~~ 263 (414)
T 3oiy_A 228 ARNITHVRISSRSKEKLVELLEIFRDGILIFAQTEE 263 (414)
T ss_dssp CCSEEEEEESSCCHHHHHHHHHHHCSSEEEEESSHH
T ss_pred cccchheeeccCHHHHHHHHHHHcCCCEEEEECCHH
Confidence 557788777654 222222224579999999974
No 31
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2e-28 Score=295.11 Aligned_cols=172 Identities=19% Similarity=0.211 Sum_probs=151.8
Q ss_pred CccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 006737 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (633)
Q Consensus 380 ~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vL 459 (633)
.|..+++++.+...+...++..|+++|.++|+.++.|+|+|++||||||||++|++|++..+... .++|
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g-----------~rvl 231 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-----------QRVI 231 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT-----------CEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC-----------CeEE
Confidence 46777888877777777778889999999999999999999999999999999999999887432 4799
Q ss_pred EEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEE
Q 006737 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (633)
Q Consensus 460 ILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LV 539 (633)
||+||++|+.|+++.+..++. .+++++|+.... ..++|+|+||++|.+++... ...+.++.+||
T Consensus 232 vl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~---~~~l~~l~lVV 295 (1108)
T 3l9o_A 232 YTSPIKALSNQKYRELLAEFG-----DVGLMTGDITIN--------PDAGCLVMTTEILRSMLYRG---SEVMREVAWVI 295 (1108)
T ss_dssp EEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBCC--------CSCSEEEEEHHHHHHHHHHC---SSHHHHEEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhC-----CccEEeCccccC--------CCCCEEEeChHHHHHHHHcC---ccccccCCEEE
Confidence 999999999999999999864 577888887643 34799999999999999776 24578999999
Q ss_pred EecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 540 LDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 540 IDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
|||||++++++|...+..++..+++.+|+|+||||+++.
T Consensus 296 IDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~ 334 (1108)
T 3l9o_A 296 FDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNA 334 (1108)
T ss_dssp EETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSC
T ss_pred EhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCH
Confidence 999999999999999999999999999999999999886
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.94 E-value=1.4e-26 Score=262.98 Aligned_cols=177 Identities=19% Similarity=0.284 Sum_probs=145.4
Q ss_pred CccccCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 380 RFDECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 380 ~F~el~L~~~Ll~~L~~-~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
.+.++++++.+.+.|.+ +||..|+|+|.++|+.++.|+|+++++|||+|||+||++|++.. ..++
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------------~g~~ 87 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------------DGFT 87 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------------SSEE
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------------CCcE
Confidence 34568999999999999 69999999999999999999999999999999999999999742 1369
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHH---H--hcCCCcEEEECchhhH------HHHhcccC
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR---L--ESDPCQILVATPGRLL------DHIENKSG 527 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~---l--~~~~~dILIaTPgrLl------~lL~~~~~ 527 (633)
|||+|+++|+.|+++.+..+ ++.+..++|+......... + ....++|||+||++|. +.+..
T Consensus 88 lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--- 159 (591)
T 2v1x_A 88 LVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--- 159 (591)
T ss_dssp EEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH---
T ss_pred EEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh---
Confidence 99999999999999999887 6788888888775543322 2 3456899999999874 23332
Q ss_pred cccccCCeeEEEEecccccCCcC--hHHHHHH--HHHHCCCCCcEEEEeccCChhh
Q 006737 528 LSVRLMGLKMLVLDEADHLLDLG--FRKDVEN--IVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 528 ~~~~Ls~l~~LVIDEAD~Lld~g--f~~~l~~--Il~~lpk~~Q~IlfSATl~~el 579 (633)
...+..+.+|||||||++++|| |...+.. ++....+..|+|+||||+++.+
T Consensus 160 -~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v 214 (591)
T 2v1x_A 160 -AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHV 214 (591)
T ss_dssp -HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHH
T ss_pred -hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHH
Confidence 2457799999999999999998 7777665 3444445799999999999874
No 33
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.94 E-value=1.7e-26 Score=267.45 Aligned_cols=180 Identities=23% Similarity=0.261 Sum_probs=156.5
Q ss_pred CccccCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 380 ~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~-il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
+|++++|++.+.+.+.+.||..|+++|.++++. ++.++++++++|||||||++|.+|+++.+.... .++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~----------~~~ 71 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG----------GKA 71 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC----------SEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC----------CEE
Confidence 589999999999999999999999999999998 889999999999999999999999998887432 369
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEE
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~L 538 (633)
||++|+++||.|+++.+..+.. . ++.+..++|+....... + ..++|+|+||++|..++... ...+.++++|
T Consensus 72 l~i~P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~~--~--~~~~Iiv~Tpe~l~~~~~~~---~~~l~~~~~v 142 (720)
T 2zj8_A 72 VYIVPLKALAEEKFQEFQDWEK-I-GLRVAMATGDYDSKDEW--L--GKYDIIIATAEKFDSLLRHG---SSWIKDVKIL 142 (720)
T ss_dssp EEECSSGGGHHHHHHHTGGGGG-G-TCCEEEECSCSSCCCGG--G--GGCSEEEECHHHHHHHHHHT---CTTGGGEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHHh-c-CCEEEEecCCCCccccc--c--CCCCEEEECHHHHHHHHHcC---hhhhhcCCEE
Confidence 9999999999999999965443 2 78899999986654321 2 24799999999999988765 2347899999
Q ss_pred EEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 539 VIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
||||||++.++++...+..++..++...|+|+||||+++.
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~ 182 (720)
T 2zj8_A 143 VADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNP 182 (720)
T ss_dssp EEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH
T ss_pred EEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH
Confidence 9999999999889999999999887789999999999864
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=6.1e-27 Score=260.90 Aligned_cols=233 Identities=23% Similarity=0.268 Sum_probs=153.3
Q ss_pred ccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEE
Q 006737 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458 (633)
Q Consensus 381 F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~g--rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~v 458 (633)
|...++++.+++.|.+.||..|+++|.++|+.++.+ +++++++|||||||++|++|++..+.... .+.++
T Consensus 121 ~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~--------~~~~v 192 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV--------PKPQA 192 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC--------CSCCE
T ss_pred ccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC--------CCceE
Confidence 556678999999999999999999999999999998 89999999999999999999998764432 23469
Q ss_pred EEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEE
Q 006737 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (633)
Q Consensus 459 LILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~L 538 (633)
|||+|+++|+.|+++.+..++... ++.+....++..... ....++|+|+||++|..++... ...+.++++|
T Consensus 193 Lvl~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~l~~~---~~~~~~~~lI 263 (508)
T 3fho_A 193 ICLAPSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPKG-----AKIDAQIVIGTPGTVMDLMKRR---QLDARDIKVF 263 (508)
T ss_dssp EEECSCHHHHHHHHHHHHHHSTTS-SCCEEC---------------CCCCSEEEECHHHHHHHHHTT---CSCCTTCCEE
T ss_pred EEEECcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCccccc-----ccCCCCEEEECHHHHHHHHHcC---CccccCCCEE
Confidence 999999999999999999987644 455555444433221 1225799999999999988765 3567899999
Q ss_pred EEecccccCC-cChHHHHHHHHHHCCCCCcEEEEeccCChhhh-----ccccceEeeeccccccccCccceEEEeehh--
Q 006737 539 VLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSATMPKELV-----LKREHTYIDTVGLGSVETPVKVSKYNIYVF-- 610 (633)
Q Consensus 539 VIDEAD~Lld-~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~-----l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~-- 610 (633)
||||||++.+ .++...+..++..+++..|+|+||||+++.+. +......+.... .......+.+.++.+.
T Consensus 264 IiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~ 341 (508)
T 3fho_A 264 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKT--EELSVEGIKQLYMDCQSE 341 (508)
T ss_dssp EECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCC--CC----CCCCEEEEC--C
T ss_pred EEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEecc--ccCCcccceEEEEECCch
Confidence 9999999987 67999999999999999999999999998642 122222222111 1223344555555442
Q ss_pred ------hHHHHhhcCCceEEEEEccccC
Q 006737 611 ------VLVLSIKIQAFYIICFVYTISM 632 (633)
Q Consensus 611 ------~l~~~~k~~~~~~LVFcnT~s~ 632 (633)
+..........++||||||+.+
T Consensus 342 ~~k~~~l~~ll~~~~~~~~LVF~~s~~~ 369 (508)
T 3fho_A 342 EHKYNVLVELYGLLTIGQSIIFCKKKDT 369 (508)
T ss_dssp HHHHHHHHHHHC---CCCEEEBCSSTTT
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCHHH
Confidence 2222334455799999999864
No 35
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.94 E-value=1e-26 Score=280.20 Aligned_cols=214 Identities=19% Similarity=0.209 Sum_probs=165.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
+|| +|+++|.++|+.++.|+|++++||||||||++|+++++..+. .++++|||+||++||.|+++.+.
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-----------~~~~~Lil~PtreLa~Q~~~~l~ 142 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLVKQTLERLQ 142 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-----------cCCeEEEEechHHHHHHHHHHHH
Confidence 678 699999999999999999999999999999998888877651 13469999999999999999999
Q ss_pred HHHhcCCCceEEEEECCccc---hHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCC-----
Q 006737 477 ALLKNHDGIGVLTLVGGTRF---KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD----- 548 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~---~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld----- 548 (633)
.++ ..++.+.+++|+... ..+...+..+.++|||+||++|.+++.. +.+.++++|||||||+++.
T Consensus 143 ~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 143 KLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp TTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHH
T ss_pred Hhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccc
Confidence 965 448899999999987 5566677776689999999999888763 4578999999999977654
Q ss_pred ------cChHHH-HHHHHHHCC-----------CCCcEEEEecc-CChhhh--ccccceEeeeccccccccCccceEEEe
Q 006737 549 ------LGFRKD-VENIVDCLP-----------RRRQSLLFSAT-MPKELV--LKREHTYIDTVGLGSVETPVKVSKYNI 607 (633)
Q Consensus 549 ------~gf~~~-l~~Il~~lp-----------k~~Q~IlfSAT-l~~el~--l~~~~~~i~~~~~~~~~~~~~V~q~~i 607 (633)
+||... +..++..++ .++|+++|||| .|..+. +......+... .......++.|.++
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~--~~~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG--RLVSVARNITHVRI 293 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCC--BCCCCCCCEEEEEE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEec--cCCCCcCCceeEEE
Confidence 788888 889998887 78999999999 455432 11111111111 12345667888887
Q ss_pred ehh---hHHHHhhcCCceEEEEEcccc
Q 006737 608 YVF---VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 608 ~v~---~l~~~~k~~~~~~LVFcnT~s 631 (633)
.+. .+.........++||||||+.
T Consensus 294 ~~~k~~~L~~ll~~~~~~~LVF~~s~~ 320 (1104)
T 4ddu_A 294 SSRSKEKLVELLEIFRDGILIFAQTEE 320 (1104)
T ss_dssp SCCCHHHHHHHHHHHCSSEEEEESSSH
T ss_pred ecCHHHHHHHHHHhcCCCEEEEECcHH
Confidence 664 222222224579999999974
No 36
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.94 E-value=4e-26 Score=263.83 Aligned_cols=180 Identities=21% Similarity=0.216 Sum_probs=154.7
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~-il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
.+|++++|++.+.+.+.+.||..|+++|.++++. +..+++++++||||||||++|.+|+++.+... +.+
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~ 77 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----------GGK 77 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----------CCe
Confidence 5699999999999999999999999999999999 78899999999999999999999999887643 237
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+||++|+++||.|+++.++.+.. . ++.+..++|+...... .+. .++|+|+||++|..++... ...+.++++
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~~~--~~~Iiv~Tpe~l~~~~~~~---~~~l~~~~~ 148 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL-I-GFKVAMTSGDYDTDDA--WLK--NYDIIITTYEKLDSLWRHR---PEWLNEVNY 148 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG-G-TCCEEECCSCSSSCCG--GGG--GCSEEEECHHHHHHHHHHC---CGGGGGEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCCchh--hcC--CCCEEEEcHHHHHHHHhCC---hhHhhccCE
Confidence 99999999999999999854432 3 7889999998665432 122 4799999999999988765 244789999
Q ss_pred EEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
|||||||++.+.++...+..++..++ +.|+|+||||+++.
T Consensus 149 vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~ 188 (715)
T 2va8_A 149 FVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY 188 (715)
T ss_dssp EEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH
T ss_pred EEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH
Confidence 99999999998889999998888776 89999999999864
No 37
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.93 E-value=1.9e-26 Score=258.17 Aligned_cols=178 Identities=20% Similarity=0.278 Sum_probs=144.6
Q ss_pred cCccccCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 379 KRFDECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~-~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
..|++++|++.+.+.|.+ +||..|+++|.++|+.+++|+|+++++|||+|||+||++|++.. . ..
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~-----------g~ 67 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---N-----------GL 67 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---S-----------SE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---C-----------CC
Confidence 358999999999999999 89999999999999999999999999999999999999999732 1 25
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccCC
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~ 534 (633)
+|||+|+++|+.|+++.+..+ ++.+..++++....... ..+..+.++|+|+||++|....... .+...+
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~---~l~~~~ 139 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE---HLAHWN 139 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH---HHTTSC
T ss_pred EEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH---HHhhCC
Confidence 899999999999999988875 67788888876654332 3444566899999999995321111 133468
Q ss_pred eeEEEEecccccCCcC--hHHHHHH---HHHHCCCCCcEEEEeccCChhh
Q 006737 535 LKMLVLDEADHLLDLG--FRKDVEN---IVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 535 l~~LVIDEAD~Lld~g--f~~~l~~---Il~~lpk~~Q~IlfSATl~~el 579 (633)
+.+|||||||++++|| |...+.. ++..++ +.|+++||||+++.+
T Consensus 140 ~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~ 188 (523)
T 1oyw_A 140 PVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTT 188 (523)
T ss_dssp EEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHH
T ss_pred CCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHH
Confidence 9999999999999988 6666554 455554 689999999999874
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.93 E-value=1.4e-26 Score=267.44 Aligned_cols=179 Identities=20% Similarity=0.262 Sum_probs=149.7
Q ss_pred CccccC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 380 RFDECG--ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 380 ~F~el~--L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
+|++++ |++.+.+.|.+.||..|+++|.++++.++.++|+++++|||||||++|.+|+++.+... .+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~ 70 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG-----------GK 70 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-----------CC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----------Cc
Confidence 588898 99999999999999999999999999999999999999999999999999999887532 35
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeE
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~ 537 (633)
+||++|+++||.|+++.++.+. .. ++++..++|+...... . ...++|+|+||++|..++.+. ...+.++++
T Consensus 71 ~l~i~P~r~La~q~~~~~~~~~-~~-g~~v~~~~G~~~~~~~--~--~~~~~Iiv~Tpe~l~~~l~~~---~~~l~~~~~ 141 (702)
T 2p6r_A 71 SLYVVPLRALAGEKYESFKKWE-KI-GLRIGISTGDYESRDE--H--LGDCDIIVTTSEKADSLIRNR---ASWIKAVSC 141 (702)
T ss_dssp EEEEESSHHHHHHHHHHHTTTT-TT-TCCEEEECSSCBCCSS--C--STTCSEEEEEHHHHHHHHHTT---CSGGGGCCE
T ss_pred EEEEeCcHHHHHHHHHHHHHHH-hc-CCEEEEEeCCCCcchh--h--ccCCCEEEECHHHHHHHHHcC---hhHHhhcCE
Confidence 9999999999999999985443 22 7889999998765432 1 125799999999999988775 234789999
Q ss_pred EEEecccccCCcChHHHHHHHHHHC---CCCCcEEEEeccCChh
Q 006737 538 LVLDEADHLLDLGFRKDVENIVDCL---PRRRQSLLFSATMPKE 578 (633)
Q Consensus 538 LVIDEAD~Lld~gf~~~l~~Il~~l---pk~~Q~IlfSATl~~e 578 (633)
|||||||++.++++...+..++..+ .++.|+|+||||+++.
T Consensus 142 vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~ 185 (702)
T 2p6r_A 142 LVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNV 185 (702)
T ss_dssp EEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTH
T ss_pred EEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCH
Confidence 9999999999988888888776655 5789999999999964
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=2.4e-24 Score=268.56 Aligned_cols=227 Identities=20% Similarity=0.228 Sum_probs=161.3
Q ss_pred CCCCCcHHHHHHHHHHhC-CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 398 GYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 398 g~~~pt~iQ~~aIp~il~-grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
||+.|+++|.+++|.++. ++|+|++||||||||++|.+++++.+.+...........+.++|||+|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999998774 7899999999999999999999999887543332233446789999999999999999999
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHH
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~ 556 (633)
+.+... +++|..++|+....... . ..++||||||+++..++.+. .....+..|++|||||+|.+.+ ..+..++
T Consensus 156 ~~~~~~-gi~V~~~tGd~~~~~~~--~--~~~~IlVtTpEkld~llr~~-~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE 228 (1724)
T 4f92_B 156 KRLATY-GITVAELTGDHQLCKEE--I--SATQIIVCTPEKWDIITRKG-GERTYTQLVRLIILDEIHLLHD-DRGPVLE 228 (1724)
T ss_dssp HHHTTT-TCCEEECCSSCSSCCTT--G--GGCSEEEECHHHHHHHTTSS-TTHHHHTTEEEEEETTGGGGGS-TTHHHHH
T ss_pred HHHhhC-CCEEEEEECCCCCCccc--c--CCCCEEEECHHHHHHHHcCC-ccchhhcCcCEEEEecchhcCC-ccHHHHH
Confidence 988765 89999999997654321 1 24799999999986666443 2223478999999999998876 4555555
Q ss_pred HHH-------HHCCCCCcEEEEeccCChhhhccccceE---eeeccccccccCccceEEEeehh---------------h
Q 006737 557 NIV-------DCLPRRRQSLLFSATMPKELVLKREHTY---IDTVGLGSVETPVKVSKYNIYVF---------------V 611 (633)
Q Consensus 557 ~Il-------~~lpk~~Q~IlfSATl~~el~l~~~~~~---i~~~~~~~~~~~~~V~q~~i~v~---------------~ 611 (633)
.++ ..++...|+|+||||+|+...+...-.. ...........|..+++.++.+. .
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVY 308 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHH
Confidence 444 3457789999999999986433211000 00001112234556666654321 1
Q ss_pred HHHHhhcCCceEEEEEcccc
Q 006737 612 LVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 612 l~~~~k~~~~~~LVFcnT~s 631 (633)
..........++||||+|+.
T Consensus 309 ~~v~~~~~~~~~LVF~~sR~ 328 (1724)
T 4f92_B 309 EKIMEHAGKNQVLVFVHSRK 328 (1724)
T ss_dssp HHHTTCCSSCCEEEECSSTT
T ss_pred HHHHHHhcCCcEEEECCCHH
Confidence 11112234568999999975
No 40
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.91 E-value=1.2e-24 Score=261.55 Aligned_cols=209 Identities=19% Similarity=0.141 Sum_probs=157.6
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 396 ~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.+||. | ++|.++|+.++.|+|++++||||||||+ |++|++..+... ++++|||+||++||.|+++.+
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~----------~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK----------GKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT----------SCCEEEEESCHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc----------CCeEEEEeccHHHHHHHHHHH
Confidence 37999 9 9999999999999999999999999998 999999887642 246999999999999999999
Q ss_pred HHHHhcCCCc----eEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCC
Q 006737 476 IALLKNHDGI----GVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548 (633)
Q Consensus 476 ~~l~~~~~~i----~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld 548 (633)
..++... ++ .+.+++|+.....+ ...+.. ++|+|+||++|.+++.+ |.++++|||||||+|++
T Consensus 120 ~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~-------L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 120 RKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE-------LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT-------SCCCSEEEESCHHHHHT
T ss_pred HHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH-------hccCCEEEEeChhhhhh
Confidence 9998765 66 89999999887653 233333 79999999999987653 56899999999999998
Q ss_pred cChHHHHHHHHHHC-----------CCCCcEEEEeccCChhhhc----cccceEeeeccccccccCccceEEEeehh---
Q 006737 549 LGFRKDVENIVDCL-----------PRRRQSLLFSATMPKELVL----KREHTYIDTVGLGSVETPVKVSKYNIYVF--- 610 (633)
Q Consensus 549 ~gf~~~l~~Il~~l-----------pk~~Q~IlfSATl~~el~l----~~~~~~i~~~~~~~~~~~~~V~q~~i~v~--- 610 (633)
+ ...+..++..+ +..+|+++||||+++...+ ......+.. ........++.+.++...
T Consensus 190 ~--~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v--~~~~~~~~~i~~~~~~~~k~~ 265 (1054)
T 1gku_B 190 A--SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDI--GSSRITVRNVEDVAVNDESIS 265 (1054)
T ss_dssp S--THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCC--SCCEECCCCEEEEEESCCCTT
T ss_pred c--cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEc--cCcccCcCCceEEEechhHHH
Confidence 4 67777777766 3568999999999987211 111111111 111223446777666321
Q ss_pred hHHHHhhcCCceEEEEEcccc
Q 006737 611 VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ~l~~~~k~~~~~~LVFcnT~s 631 (633)
.+.........++||||||+.
T Consensus 266 ~L~~ll~~~~~~~LVF~~t~~ 286 (1054)
T 1gku_B 266 TLSSILEKLGTGGIIYARTGE 286 (1054)
T ss_dssp TTHHHHTTSCSCEEEEESSHH
T ss_pred HHHHHHhhcCCCEEEEEcCHH
Confidence 222333333678999999974
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=7.3e-24 Score=264.25 Aligned_cols=180 Identities=16% Similarity=0.216 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEccc
Q 006737 386 ISPLTIKALTAAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (633)
Q Consensus 386 L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~-grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPT 464 (633)
|.....++|...+|..|+|+|.++++.+++ ++|++++||||||||++|.+|+++.+..... .++|||+||
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~---------~kavyi~P~ 981 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE---------GRCVYITPM 981 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTT---------CCEEEECSC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCC---------CEEEEEcCh
Confidence 556788888888999999999999999976 5689999999999999999999999876432 369999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccc
Q 006737 465 RELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (633)
Q Consensus 465 ReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD 544 (633)
++||.|+++.+.+.+....+++|..++|+..... ..+. .++||||||+++..++.+... ...+.+|++|||||+|
T Consensus 982 raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~--~~~~--~~~IiV~TPEkld~llr~~~~-~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 982 EALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL--KLLG--KGNIIISTPEKWDILSRRWKQ-RKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH--HHHH--HCSEEEECHHHHHHHHTTTTT-CHHHHSCSEEEECCGG
T ss_pred HHHHHHHHHHHHHHhchhcCCEEEEEECCCCcch--hhcC--CCCEEEECHHHHHHHHhCccc-ccccceeeEEEeechh
Confidence 9999999999988776655889999999876432 2222 269999999999777754322 2347899999999999
Q ss_pred ccCCcChHHHHHHHH-------HHCCCCCcEEEEeccCChhhh
Q 006737 545 HLLDLGFRKDVENIV-------DCLPRRRQSLLFSATMPKELV 580 (633)
Q Consensus 545 ~Lld~gf~~~l~~Il-------~~lpk~~Q~IlfSATl~~el~ 580 (633)
.|.+. .+..+..++ ..+++.+|+|+||||+++...
T Consensus 1057 ~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~d 1098 (1724)
T 4f92_B 1057 LIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKD 1098 (1724)
T ss_dssp GGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHH
T ss_pred hcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHH
Confidence 98874 444444443 345678999999999998743
No 42
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.6e-24 Score=254.51 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=136.8
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.+|. |+++|.++++.++.|+++++++|||+|||++|+++++..+.. +.++||++||++|+.|+++.+.
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-----------g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-----------CCeEEEECChHHHHHHHHHHHH
Confidence 4664 999999999999999999999999999999999999877632 2479999999999999999999
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHH
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~ 556 (633)
.++. .+++++|+..... .++|+|+||++|..++.+. ...+.++++|||||||++.++++...+.
T Consensus 151 ~~~~-----~vglltGd~~~~~--------~~~IvV~Tpe~L~~~L~~~---~~~l~~l~lVViDEaH~l~d~~rg~~~e 214 (1010)
T 2xgj_A 151 AEFG-----DVGLMTGDITINP--------DAGCLVMTTEILRSMLYRG---SEVMREVAWVIFDEVHYMRDKERGVVWE 214 (1010)
T ss_dssp HHHS-----CEEEECSSCEECT--------TCSEEEEEHHHHHHHHHHT---CTTGGGEEEEEEETGGGGGCTTTHHHHH
T ss_pred HHhC-----CEEEEeCCCccCC--------CCCEEEEcHHHHHHHHHcC---cchhhcCCEEEEechhhhcccchhHHHH
Confidence 9874 5788888876542 3699999999999988765 3567899999999999999999999999
Q ss_pred HHHHHCCCCCcEEEEeccCChhh
Q 006737 557 NIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 557 ~Il~~lpk~~Q~IlfSATl~~el 579 (633)
.++..++...|+|+||||+++..
T Consensus 215 ~il~~l~~~~~il~LSATi~n~~ 237 (1010)
T 2xgj_A 215 ETIILLPDKVRYVFLSATIPNAM 237 (1010)
T ss_dssp HHHHHSCTTCEEEEEECCCTTHH
T ss_pred HHHHhcCCCCeEEEEcCCCCCHH
Confidence 99999999999999999999863
No 43
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.90 E-value=6.4e-24 Score=253.83 Aligned_cols=156 Identities=17% Similarity=0.222 Sum_probs=135.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
++| .|+++|.++|+.++.|+|+++++|||||||++|+++++..+.. +.++|||+||++|+.|+++.+.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-----------g~~vlvl~PtraLa~Q~~~~l~ 103 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-----------MTKTIYTSPIKALSNQKFRDFK 103 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-----------TCEEEEEESCGGGHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHHHH
Confidence 345 4899999999999999999999999999999999998876432 2479999999999999999988
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHH
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~ 556 (633)
+++. ++.+..++|+.... ..++|+|+||++|..++... ...+.++.+|||||||++.+++|...+.
T Consensus 104 ~~~~---~~~v~~l~G~~~~~--------~~~~IlV~Tpe~L~~~l~~~---~~~l~~l~lvViDEaH~l~d~~~g~~~e 169 (997)
T 4a4z_A 104 ETFD---DVNIGLITGDVQIN--------PDANCLIMTTEILRSMLYRG---ADLIRDVEFVIFDEVHYVNDQDRGVVWE 169 (997)
T ss_dssp TTC-----CCEEEECSSCEEC--------TTSSEEEEEHHHHHHHHHHT---CSGGGGEEEEEECCTTCCCTTCTTCCHH
T ss_pred HHcC---CCeEEEEeCCCccC--------CCCCEEEECHHHHHHHHHhC---chhhcCCCEEEEECcccccccchHHHHH
Confidence 7653 67899999987643 23799999999999988765 3457899999999999999999999999
Q ss_pred HHHHHCCCCCcEEEEeccCChh
Q 006737 557 NIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 557 ~Il~~lpk~~Q~IlfSATl~~e 578 (633)
.++..+++..|+|+||||+++.
T Consensus 170 ~ii~~l~~~v~iIlLSAT~~n~ 191 (997)
T 4a4z_A 170 EVIIMLPQHVKFILLSATVPNT 191 (997)
T ss_dssp HHHHHSCTTCEEEEEECCCTTH
T ss_pred HHHHhcccCCCEEEEcCCCCCh
Confidence 9999999999999999999865
No 44
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.90 E-value=9.2e-24 Score=244.13 Aligned_cols=164 Identities=21% Similarity=0.217 Sum_probs=136.3
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 396 AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 396 ~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.+|| .||++|..++|.++.|+ |+.++||+|||++|+||++...+. +..|+||+||++||.|+++.+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-----------g~~vlVltptreLA~qd~e~~ 144 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-----------GKGVHVVTVNEYLASRDAEQM 144 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHH
Confidence 4799 99999999999999999 999999999999999999854322 235999999999999999999
Q ss_pred HHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccC---cccccCCeeEEEEecccccC-CcC
Q 006737 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL-DLG 550 (633)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~---~~~~Ls~l~~LVIDEAD~Ll-d~g 550 (633)
..++.+. ++++.+++||.+....... .+|||+|+||++| .++|...-. ....++.+.++||||||.|| +.+
T Consensus 145 ~~l~~~l-gl~v~~i~gg~~~~~r~~~---~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 145 GKIFEFL-GLTVGLNLNSMSKDEKREA---YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHT-TCCEEECCTTSCHHHHHHH---HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHhhc-CCeEEEEeCCCCHHHHHHh---cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 9998876 8999999999875533322 2489999999999 676654311 12557899999999999998 653
Q ss_pred ---------------hHHHHHHHHHHCC---------CCCcEE-----------------EEeccCCh
Q 006737 551 ---------------FRKDVENIVDCLP---------RRRQSL-----------------LFSATMPK 577 (633)
Q Consensus 551 ---------------f~~~l~~Il~~lp---------k~~Q~I-----------------lfSATl~~ 577 (633)
|...+..|+..++ +.+|++ +||||++.
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~ 288 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVA 288 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccch
Confidence 7889999999997 478888 99999873
No 45
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.90 E-value=3.3e-23 Score=229.83 Aligned_cols=170 Identities=17% Similarity=0.190 Sum_probs=130.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
++..+|+++|.++++.++.|+|+++++|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+++.+.
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~ 76 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVFK 76 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc------cCCCeEEEEeCCHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999988865432 113469999999999999999999
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCccc-ccCCeeEEEEecccccCCcChHHHH
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSV-RLMGLKMLVLDEADHLLDLGFRKDV 555 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~-~Ls~l~~LVIDEAD~Lld~gf~~~l 555 (633)
.++... ++.+..++|+.........+.. +++|+|+||++|.+++... .. .+.++++|||||||++.+++....+
T Consensus 77 ~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~---~~~~~~~~~~vViDEah~~~~~~~~~~~ 151 (556)
T 4a2p_A 77 HHFERQ-GYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDG---TLTSLSIFTLMIFDECHNTTGNHPYNVL 151 (556)
T ss_dssp HHHGGG-TCCEEECCCC-----CHHHHHH-HCSEEEECHHHHHHHHHSS---SCCCSTTCSEEEEETGGGCSTTSHHHHH
T ss_pred HHhccc-CceEEEEeCCCCcchhHHHhhC-CCCEEEECHHHHHHHHHhC---cccccccCCEEEEECCcccCCcchHHHH
Confidence 998765 7889999999866554444433 3799999999999999765 24 5889999999999999988754444
Q ss_pred H-HHHHH-C---CCCCcEEEEeccCCh
Q 006737 556 E-NIVDC-L---PRRRQSLLFSATMPK 577 (633)
Q Consensus 556 ~-~Il~~-l---pk~~Q~IlfSATl~~ 577 (633)
. .++.. + ++..|+|+||||++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 152 MTRYLEQKFNSASQLPQILGLTASVGV 178 (556)
T ss_dssp HHHHHHHHHCC---CCEEEEEESCCCC
T ss_pred HHHHHHhhhcccCCCCeEEEEeCCccc
Confidence 2 33322 1 356899999999954
No 46
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.89 E-value=7.7e-23 Score=226.15 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=134.9
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
+|+++|.++++.++.|+|+++++|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+++.+..++.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC------GQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------CCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999999999999998876432 1134699999999999999999999987
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCccc-ccCCeeEEEEecccccCCcC-hHHHHHHH
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSV-RLMGLKMLVLDEADHLLDLG-FRKDVENI 558 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~-~Ls~l~~LVIDEAD~Lld~g-f~~~l~~I 558 (633)
.. ++.+..++|+.........+.. +++|+|+||++|..++.... . .+.++++|||||||++.+.+ +...+..+
T Consensus 78 ~~-~~~~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~---~~~~~~~~~vViDEah~~~~~~~~~~~~~~~ 152 (555)
T 3tbk_A 78 RL-GYNIASISGATSDSVSVQHIIE-DNDIIILTPQILVNNLNNGA---IPSLSVFTLMIFDECHNTSKNHPYNQIMFRY 152 (555)
T ss_dssp TT-TCCEEEECTTTGGGSCHHHHHH-HCSEEEECHHHHHHHHHTSS---SCCGGGCSEEEETTGGGCSTTCHHHHHHHHH
T ss_pred cC-CcEEEEEcCCCcchhhHHHHhc-CCCEEEECHHHHHHHHhcCc---ccccccCCEEEEECccccCCcchHHHHHHHH
Confidence 65 7899999999876654444433 37999999999999997652 3 57889999999999999875 33333344
Q ss_pred HHHC-----CCCCcEEEEeccCCh
Q 006737 559 VDCL-----PRRRQSLLFSATMPK 577 (633)
Q Consensus 559 l~~l-----pk~~Q~IlfSATl~~ 577 (633)
+... ....|+++||||++.
T Consensus 153 ~~~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 153 LDHKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp HHHHTSSCCSCCCEEEEEESCCCC
T ss_pred HHhhhccccCCCCeEEEEecCccc
Confidence 4332 245899999999965
No 47
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.89 E-value=9.4e-23 Score=233.92 Aligned_cols=175 Identities=17% Similarity=0.202 Sum_probs=137.1
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHH
Q 006737 391 IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470 (633)
Q Consensus 391 l~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Q 470 (633)
..+|..+||..|+++|.++++.++.|+|+|+++|||+|||++|++|+++.+...... .+.++|||+||++|+.|
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~lvl~Pt~~L~~Q 76 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG------QKGKVVFFANQIPVYEQ 76 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTT------CCCCEEEECSSHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccC------CCCeEEEEECCHHHHHH
Confidence 356677899999999999999999999999999999999999999999988764321 12469999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCccc-ccCCeeEEEEecccccCCc
Q 006737 471 IAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSV-RLMGLKMLVLDEADHLLDL 549 (633)
Q Consensus 471 i~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~-~Ls~l~~LVIDEAD~Lld~ 549 (633)
+++.+.+++... ++.+..++|+.....+...+.. .++|+|+||++|.+++.... . .+.++++|||||||++.+.
T Consensus 77 ~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~L~~~l~~~~---~~~l~~~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 77 NKSVFSKYFERH-GYRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGT---IPSLSIFTLMIFDECHNTSKQ 151 (696)
T ss_dssp HHHHHHHHTTTT-TCCEEEECSSSCSSSCHHHHHH-TCSEEEECHHHHHHHHHTTS---SCCGGGCSEEEEETGGGCSTT
T ss_pred HHHHHHHHhccC-CceEEEEeCCccccccHHHhcc-CCCEEEECHHHHHHHHhcCc---ccccccccEEEEeCCCcccCc
Confidence 999999998643 7899999999866554444443 37999999999999997652 3 5788999999999999866
Q ss_pred C-hHHHHHHHHHH-----CCCCCcEEEEeccCC
Q 006737 550 G-FRKDVENIVDC-----LPRRRQSLLFSATMP 576 (633)
Q Consensus 550 g-f~~~l~~Il~~-----lpk~~Q~IlfSATl~ 576 (633)
. +...+..++.. .++..|+|+||||+.
T Consensus 152 ~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 152 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred ccHHHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 5 33333333332 245789999999997
No 48
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.88 E-value=4.3e-23 Score=201.21 Aligned_cols=170 Identities=23% Similarity=0.288 Sum_probs=120.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHH-HHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ-IAAEA 475 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Q-i~~~l 475 (633)
.....|+++|.++++.++.++++++++|||+|||++|+++++..+....... .+.++|||+|+++|+.| +.+.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~-----~~~~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKAS-----EPGKVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTT-----CCCCEEEEESSHHHHHHHHHHTH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccccc-----CCCcEEEEECHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999998776543111 13469999999999999 67778
Q ss_pred HHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccC---cccccCCeeEEEEecccccCCcChH
Q 006737 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG---LSVRLMGLKMLVLDEADHLLDLGFR 552 (633)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~---~~~~Ls~l~~LVIDEAD~Lld~gf~ 552 (633)
..+... ++.+..++|+.........+.. .++|+|+||+.|..++..... ....+.++.+|||||||+++..++.
T Consensus 104 ~~~~~~--~~~v~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 104 QPFLKK--WYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp HHHHTT--TSCEEECCC---CCCCHHHHHH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CH
T ss_pred HHHhcc--CceEEEEeCCcccchhHHhhcc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcH
Confidence 777653 6788888888765543333333 369999999999998876421 0144678999999999999877665
Q ss_pred HHHH-HHHHHC-------------CCCCcEEEEecc
Q 006737 553 KDVE-NIVDCL-------------PRRRQSLLFSAT 574 (633)
Q Consensus 553 ~~l~-~Il~~l-------------pk~~Q~IlfSAT 574 (633)
..+. .++... .+..++|+||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 5553 332221 157899999998
No 49
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.8e-22 Score=201.06 Aligned_cols=173 Identities=17% Similarity=0.224 Sum_probs=130.0
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHH
Q 006737 388 PLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467 (633)
Q Consensus 388 ~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReL 467 (633)
+.+.+.+.......++++|.++++.+..|++++++|+||||||+++.++++..+..... ...+++|+++|+++|
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~l 121 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRIS 121 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchHH
Confidence 34444444444456899999999999999999999999999999999999887765432 123579999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccccc-
Q 006737 468 ASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL- 546 (633)
Q Consensus 468 a~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~L- 546 (633)
+.|+.+.+........+..++....... ......++|+||||++|++++.. .+.++++|||||||.+
T Consensus 122 a~q~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~Ivv~Tpg~l~~~l~~------~l~~~~~lVlDEah~~~ 189 (235)
T 3llm_A 122 AVSVAERVAFERGEEPGKSCGYSVRFES------ILPRPHASIMFCTVGVLLRKLEA------GIRGISHVIVDEIHERD 189 (235)
T ss_dssp HHHHHHHHHHTTTCCTTSSEEEEETTEE------ECCCSSSEEEEEEHHHHHHHHHH------CCTTCCEEEECCTTSCC
T ss_pred HHHHHHHHHHHhccccCceEEEeechhh------ccCCCCCeEEEECHHHHHHHHHh------hhcCCcEEEEECCccCC
Confidence 9999888876654333344433221111 11123479999999999999865 3789999999999996
Q ss_pred CCcChH-HHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 547 LDLGFR-KDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 547 ld~gf~-~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
++.+|. ..+..++... +++|+|+||||++.+.
T Consensus 190 ~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 190 INTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH
T ss_pred cchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH
Confidence 677777 4666666665 4799999999999885
No 50
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.87 E-value=6.2e-22 Score=231.82 Aligned_cols=169 Identities=17% Similarity=0.187 Sum_probs=131.4
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
+|+..|+++|.++|+.++.|+|+|+++|||+|||++|++|++..+..... ..+.++|||+||++|+.|+++.+.
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~Lvl~Pt~~L~~Q~~~~~~ 317 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVFK 317 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999998876431 113469999999999999999999
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCccc-ccCCeeEEEEecccccCCcChHHHH
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSV-RLMGLKMLVLDEADHLLDLGFRKDV 555 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~-~Ls~l~~LVIDEAD~Lld~gf~~~l 555 (633)
.++... ++.+..++|+.........+.. +++|+|+||++|.+++... .. .+.++++|||||||++...+....+
T Consensus 318 ~~~~~~-~~~v~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~---~~~~~~~~~~iViDEaH~~~~~~~~~~i 392 (797)
T 4a2q_A 318 HHFERQ-GYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDG---TLTSLSIFTLMIFDECHNTTGNHPYNVL 392 (797)
T ss_dssp HHHGGG-TCCEEEECCC-----CHHHHHH-TCSEEEECHHHHHHHHHSS---SCCCGGGCSEEEETTGGGCSTTSHHHHH
T ss_pred HhcccC-CceEEEEeCCcchhhhHHHhhC-CCCEEEEchHHHHHHHHhc---cccccccCCEEEEECccccCCCccHHHH
Confidence 998765 7899999999876655444443 4799999999999999765 23 5788999999999999976543333
Q ss_pred -HHHHHHC----CCCCcEEEEeccCC
Q 006737 556 -ENIVDCL----PRRRQSLLFSATMP 576 (633)
Q Consensus 556 -~~Il~~l----pk~~Q~IlfSATl~ 576 (633)
..++... .+..|+|+||||++
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 393 MTRYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHHHHHHHTTCCCCCEEEEEESCCC
T ss_pred HHHHHHHhhccCCCCCeEEEEcCCcc
Confidence 3333321 45689999999995
No 51
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.86 E-value=2e-21 Score=226.50 Aligned_cols=165 Identities=16% Similarity=0.237 Sum_probs=130.0
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEE
Q 006737 388 PLTIKALTAAGYIQMTRVQEATLSACLEG------KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461 (633)
Q Consensus 388 ~~Ll~~L~~~g~~~pt~iQ~~aIp~il~g------rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLIL 461 (633)
+.+.+.+..++| .||++|.++|+.++.+ .|++++++||||||++|++|++..+... .++||+
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-----------~qvlvl 423 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-----------FQTAFM 423 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-----------SCEEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-----------CeEEEE
Confidence 445555677899 9999999999999876 5999999999999999999999887543 359999
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEE
Q 006737 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538 (633)
Q Consensus 462 vPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~L 538 (633)
+||++||.|+++.+.+++... ++++.+++|+...... ...+..+.++|+|+||+.|.+ ...+.++.+|
T Consensus 424 aPtr~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~--------~~~~~~l~lV 494 (780)
T 1gm5_A 424 VPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE--------DVHFKNLGLV 494 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH--------CCCCSCCCEE
T ss_pred eCcHHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh--------hhhccCCceE
Confidence 999999999999999998655 7899999999876543 344556678999999987743 2457899999
Q ss_pred EEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 539 VIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
||||+|++.... ...+.......|+++||||..+.
T Consensus 495 VIDEaHr~g~~q-----r~~l~~~~~~~~vL~mSATp~p~ 529 (780)
T 1gm5_A 495 IIDEQHRFGVKQ-----REALMNKGKMVDTLVMSATPIPR 529 (780)
T ss_dssp EEESCCCC----------CCCCSSSSCCCEEEEESSCCCH
T ss_pred EecccchhhHHH-----HHHHHHhCCCCCEEEEeCCCCHH
Confidence 999999974221 11122223468999999997665
No 52
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.85 E-value=1.7e-21 Score=214.13 Aligned_cols=153 Identities=17% Similarity=0.183 Sum_probs=115.0
Q ss_pred CCCCCcHHHHHHHHHHhCCCcE-EEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 398 GYIQMTRVQEATLSACLEGKDA-VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 398 g~~~pt~iQ~~aIp~il~grDv-Lv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
|+.+++|+|+ +||.++.++++ ++++|||||||++|++|++.++.... .++|||+|||+||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~----------~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR----------LRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT----------CCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC----------CcEEEECCCHHHHHHHHHHhc
Confidence 7889999986 79999999887 99999999999999999998876532 469999999999999998774
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHH
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~ 556 (633)
++.+......... .......|.|+|++.|.+.+... ..+.++++|||||||++ +..+...+.
T Consensus 70 -------g~~v~~~~~~~~~------~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~~~~~~~~~ 131 (451)
T 2jlq_A 70 -------GLPIRYQTPAVKS------DHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-DPCSVAARG 131 (451)
T ss_dssp -------TSCEEECCTTCSC------CCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTCC-SHHHHHHHH
T ss_pred -------Cceeeeeeccccc------cCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCccC-CcchHHHHH
Confidence 3333222111110 11223579999999998888654 45789999999999987 444444444
Q ss_pred HHHH-HCCCCCcEEEEeccCChhh
Q 006737 557 NIVD-CLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 557 ~Il~-~lpk~~Q~IlfSATl~~el 579 (633)
.+.. ..++++|+|+||||++..+
T Consensus 132 ~~~~~~~~~~~~~i~~SAT~~~~~ 155 (451)
T 2jlq_A 132 YISTRVEMGEAAAIFMTATPPGST 155 (451)
T ss_dssp HHHHHHHTTSCEEEEECSSCTTCC
T ss_pred HHHHhhcCCCceEEEEccCCCccc
Confidence 3433 3456799999999999874
No 53
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.84 E-value=5.4e-21 Score=227.67 Aligned_cols=170 Identities=17% Similarity=0.171 Sum_probs=129.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.|+..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+..... ..+.++|||+||++|+.|++..+.
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~------~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS------SCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999877654321 113469999999999999999999
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChH-HHH
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR-KDV 555 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~-~~l 555 (633)
.++... ++.+..++|+.....+...+.. .++|+|+||++|.+++.... ...+.++++|||||||++...+.. ..+
T Consensus 318 ~~~~~~-~~~v~~~~G~~~~~~~~~~~~~-~~~IvI~Tp~~L~~~l~~~~--~~~l~~~~liViDEaH~~~~~~~~~~i~ 393 (936)
T 4a2w_A 318 HHFERQ-GYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLM 393 (936)
T ss_dssp HHHHTT-TCCEEEECCC-----CCHHHHH-HCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHhccc-CceEEEEECCcchhhHHHHhcc-CCCEEEecHHHHHHHHHcCc--cccccCCCEEEEECccccCCCccHHHHH
Confidence 998755 7899999999865544444433 36999999999999997652 125788999999999999977533 333
Q ss_pred HHHHHHC----CCCCcEEEEeccCC
Q 006737 556 ENIVDCL----PRRRQSLLFSATMP 576 (633)
Q Consensus 556 ~~Il~~l----pk~~Q~IlfSATl~ 576 (633)
..++... .+..|+++||||..
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred HHHHHHhhccCCCcCeEEEecCCcc
Confidence 3333321 45689999999995
No 54
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.84 E-value=3.5e-21 Score=222.32 Aligned_cols=150 Identities=23% Similarity=0.208 Sum_probs=111.8
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.|. .|+++|..++|.++.|+ |+.++||+|||++|+||++...+. +.+|+||+||++||.|+++.+.
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-----------g~~vlVltPTreLA~Q~~e~~~ 136 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAENNR 136 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-----------SSCCEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 464 89999999999999998 999999999999999999865432 2359999999999999999999
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccC---cccccCCeeEEEEecccccC-Cc--
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL-DL-- 549 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~---~~~~Ls~l~~LVIDEAD~Ll-d~-- 549 (633)
.++.+. ++++.+++||.+.... .+.. +++|+||||++| .++|...-. ....++.+.++||||||.|| +.
T Consensus 137 ~l~~~l-gl~v~~i~GG~~~~~r--~~~~-~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 137 PLFEFL-GLTVGINLPGMPAPAK--REAY-AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHT-TCCEEECCTTCCHHHH--HHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHhc-CCeEEEEeCCCCHHHH--HHhc-CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 999877 8999999999875432 2222 489999999999 788865421 12457899999999999998 54
Q ss_pred -------------ChHHHHHHHHHHCCC
Q 006737 550 -------------GFRKDVENIVDCLPR 564 (633)
Q Consensus 550 -------------gf~~~l~~Il~~lpk 564 (633)
+|...+..|+..+++
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp CEEEEEEC--------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchh
Confidence 367888889888874
No 55
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.84 E-value=7.5e-21 Score=219.94 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=136.8
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.|+ +|+++|..++|.++.|+ |+.++||+|||++|+||++...+.. ..|+||+||++||.|+++.+.
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g-----------~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG-----------NGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT-----------SCEEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC-----------CCeEEEeCCHHHHHHHHHHHH
Confidence 688 99999999999999998 9999999999999999997544322 249999999999999999999
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccC---cccccCCeeEEEEecccccC-C---
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL-D--- 548 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~---~~~~Ls~l~~LVIDEAD~Ll-d--- 548 (633)
.++.+. ++++++++||.+........ .|||+|+||++| .++|...-. ....++.+.++||||||.|| +
T Consensus 174 ~l~~~l-GLsv~~i~gg~~~~~r~~~y---~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDear 249 (922)
T 1nkt_A 174 RVHRFL-GLQVGVILATMTPDERRVAY---NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEAR 249 (922)
T ss_dssp HHHHHT-TCCEEECCTTCCHHHHHHHH---HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGG
T ss_pred HHHhhc-CCeEEEEeCCCCHHHHHHhc---CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCc
Confidence 999876 89999999998754332222 379999999999 788765411 13557899999999999998 4
Q ss_pred ------------cChHHHHHHHHHHCC---------CCCcEE-----------------EEeccCCh
Q 006737 549 ------------LGFRKDVENIVDCLP---------RRRQSL-----------------LFSATMPK 577 (633)
Q Consensus 549 ------------~gf~~~l~~Il~~lp---------k~~Q~I-----------------lfSATl~~ 577 (633)
.+|...+..|+..++ +.+|++ +||||++.
T Consensus 250 tPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~ 316 (922)
T 1nkt_A 250 TPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSP 316 (922)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCC
T ss_pred cceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchh
Confidence 358899999999998 789998 99999875
No 56
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.84 E-value=1.2e-21 Score=223.45 Aligned_cols=171 Identities=17% Similarity=0.157 Sum_probs=124.6
Q ss_pred ccc-cCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 006737 381 FDE-CGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459 (633)
Q Consensus 381 F~e-l~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vL 459 (633)
|.. +++++.++++|... ...++|+|+.+++.++.|+|++++||||||||++|++|+++.+... ++++|
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~----------~~~vL 219 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR----------RLRTL 219 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEE
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCeEE
Confidence 344 56677766666543 5789999988999999999999999999999999999999988753 24699
Q ss_pred EEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEE
Q 006737 460 ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (633)
Q Consensus 460 ILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LV 539 (633)
||+|||+||.|+++.+. +..+. +.+.. . ......+..|.++|.+.|...+... ..+.++++||
T Consensus 220 vl~PtreLa~Qi~~~l~-------~~~v~-~~~~~-l----~~~~tp~~~i~~~t~~~l~~~l~~~----~~l~~~~~iV 282 (618)
T 2whx_A 220 ILAPTRVVAAEMEEALR-------GLPIR-YQTPA-V----KSDHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIV 282 (618)
T ss_dssp EEESSHHHHHHHHHHTT-------TSCEE-ECCTT-S----SCCCCSSSCEEEEEHHHHHHHHHHC----SSCCCCSEEE
T ss_pred EEcChHHHHHHHHHHhc-------CCcee-Eeccc-c----eeccCCCceEEEEChHHHHHHHhcc----ccccCCeEEE
Confidence 99999999999997765 22333 11111 0 0011223356677888777666543 4578999999
Q ss_pred EecccccCCcChHHHHHHHHHHCC-CCCcEEEEeccCChhhh
Q 006737 540 LDEADHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKELV 580 (633)
Q Consensus 540 IDEAD~Lld~gf~~~l~~Il~~lp-k~~Q~IlfSATl~~el~ 580 (633)
|||||++ +.+|...+..|+..++ +++|+|+||||++..+.
T Consensus 283 iDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~ 323 (618)
T 2whx_A 283 MDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD 323 (618)
T ss_dssp EESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCC
T ss_pred EECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhh
Confidence 9999998 6778888888888775 68999999999998853
No 57
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.83 E-value=5.1e-21 Score=219.60 Aligned_cols=169 Identities=22% Similarity=0.262 Sum_probs=125.9
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH-HHHHHHHH
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI-AAEAIALL 479 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi-~~~l~~l~ 479 (633)
.|+++|.++++.++.|+|+|+++|||+|||++|++|+++.+...... ..+.++|||+||++|+.|+ ++.+..++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----TCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----CCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999888765320 0113589999999999999 99999998
Q ss_pred hcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhccc---CcccccCCeeEEEEecccccCCcChH-HHH
Q 006737 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS---GLSVRLMGLKMLVLDEADHLLDLGFR-KDV 555 (633)
Q Consensus 480 ~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~---~~~~~Ls~l~~LVIDEAD~Lld~gf~-~~l 555 (633)
.. .+.+..++|+.........+.. .++|||+||++|..++.... .....+..+++|||||||++...++. ..+
T Consensus 82 ~~--~~~v~~~~g~~~~~~~~~~~~~-~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 82 KK--WYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp TT--TSCEEEEC----CCCCHHHHHH-SCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred Cc--CceEEEEeCCcchhhHHHhhhc-CCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 64 4889999999776554444433 47999999999998884321 11346788999999999998754422 222
Q ss_pred HHHHHH----C---------CCCCcEEEEeccCCh
Q 006737 556 ENIVDC----L---------PRRRQSLLFSATMPK 577 (633)
Q Consensus 556 ~~Il~~----l---------pk~~Q~IlfSATl~~ 577 (633)
..++.. . .+..|+|+||||.+.
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 222221 1 156799999999997
No 58
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.83 E-value=1.7e-20 Score=192.73 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=122.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.|+++|.++++.++.+++.+++++||+|||+++++++...+.... .++|||+||++|+.|+++++.++..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~----------~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE----------GKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS----------SEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC----------CeEEEEECCHHHHHHHHHHHHHhcc
Confidence 799999999999999889999999999999999888777654321 2699999999999999999998854
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHH
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~ 560 (633)
. ....+..++++..... .....++|+|+||+.|.... ...+.++++|||||||++.. ..+..++.
T Consensus 183 ~-~~~~~~~~~~~~~~~~----~~~~~~~I~v~T~~~l~~~~------~~~~~~~~~vIiDEaH~~~~----~~~~~il~ 247 (282)
T 1rif_A 183 F-SHAMIKKIGGGASKDD----KYKNDAPVVVGTWQTVVKQP------KEWFSQFGMMMNDECHLATG----KSISSIIS 247 (282)
T ss_dssp C-CGGGEEECSTTCSSTT----CCCTTCSEEEECHHHHTTSC------GGGGGGEEEEEEETGGGCCH----HHHHHHTT
T ss_pred c-ccceEEEEeCCCcchh----hhccCCcEEEEchHHHHhhH------HHHHhhCCEEEEECCccCCc----ccHHHHHH
Confidence 3 2567777777765432 11234799999998875432 13467899999999999974 47778888
Q ss_pred HCCCCCcEEEEeccCChh
Q 006737 561 CLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 561 ~lpk~~Q~IlfSATl~~e 578 (633)
.+.+..++++||||+++.
T Consensus 248 ~~~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 248 GLNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp TCTTCCEEEEECSSCCTT
T ss_pred HhhcCCeEEEEeCCCCCc
Confidence 887789999999999876
No 59
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.82 E-value=1e-19 Score=195.54 Aligned_cols=160 Identities=20% Similarity=0.213 Sum_probs=131.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.|+++|.++++.++.+ ++++++|||+|||++++++++..+... +.++|||+|+++|+.|+++++.+++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~----------~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY----------GGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS----------CSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC----------CCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 6899999999999999 999999999999999999998876521 23599999999999999999998863
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHH
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~ 560 (633)
.+...+..++|+........... .++|+|+||+.|...+... ...+.++++|||||||++.+......+...+.
T Consensus 78 -~~~~~v~~~~g~~~~~~~~~~~~--~~~ivv~T~~~l~~~~~~~---~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~ 151 (494)
T 1wp9_A 78 -LPPEKIVALTGEKSPEERSKAWA--RAKVIVATPQTIENDLLAG---RISLEDVSLIVFDEAHRAVGNYAYVFIAREYK 151 (494)
T ss_dssp -SCGGGEEEECSCSCHHHHHHHHH--HCSEEEECHHHHHHHHHTT---SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred -cchhheEEeeCCcchhhhhhhcc--CCCEEEecHHHHHHHHhcC---CcchhhceEEEEECCcccCCCCcHHHHHHHHH
Confidence 23458888999877654333332 3699999999999988765 35678899999999999987666666666666
Q ss_pred HCCCCCcEEEEeccCCh
Q 006737 561 CLPRRRQSLLFSATMPK 577 (633)
Q Consensus 561 ~lpk~~Q~IlfSATl~~ 577 (633)
...+..++++||||..+
T Consensus 152 ~~~~~~~~l~lTaTp~~ 168 (494)
T 1wp9_A 152 RQAKNPLVIGLTASPGS 168 (494)
T ss_dssp HHCSSCCEEEEESCSCS
T ss_pred hcCCCCeEEEEecCCCC
Confidence 66778999999999974
No 60
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.82 E-value=1.7e-19 Score=218.65 Aligned_cols=169 Identities=20% Similarity=0.155 Sum_probs=131.9
Q ss_pred cCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhC----CC--cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 384 CGISPLTIKALTA-AGYIQMTRVQEATLSACLE----GK--DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 384 l~L~~~Ll~~L~~-~g~~~pt~iQ~~aIp~il~----gr--DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
++++....+.+.. ++|. +|++|.++|+.++. ++ |+|++++||+|||++|+++++..+.. +.
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-----------g~ 653 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----------HK 653 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----------TC
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CC
Confidence 4566677777654 5775 79999999999987 66 99999999999999999998876432 24
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++|||+||++||.|+++.+.+.+... ++.+..+++....... ...+..+.++|+|+||+.|. . ...+.
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~----~~~~~ 724 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S----DVKFK 724 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S----CCCCS
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----C----Ccccc
Confidence 79999999999999999999887654 6788888876554432 34455667899999997553 2 25678
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
++.+|||||||++. .....++..++..+++++||||..+.
T Consensus 725 ~l~lvIiDEaH~~g-----~~~~~~l~~l~~~~~vl~lSATp~p~ 764 (1151)
T 2eyq_A 725 DLGLLIVDEEHRFG-----VRHKERIKAMRANVDILTLTATPIPR 764 (1151)
T ss_dssp SEEEEEEESGGGSC-----HHHHHHHHHHHTTSEEEEEESSCCCH
T ss_pred ccceEEEechHhcC-----hHHHHHHHHhcCCCCEEEEcCCCChh
Confidence 99999999999953 23455566666789999999998665
No 61
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.82 E-value=8.5e-21 Score=216.77 Aligned_cols=147 Identities=18% Similarity=0.134 Sum_probs=117.0
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.+...|..+++.+..++|++++||||||||++|.+|+++. +.++||++|||+||.|+++.+.+.+
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------g~~vLVl~PTReLA~Qia~~l~~~~- 281 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------GYKVLVLNPSVAATLGFGAYMSKAH- 281 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------------TCCEEEEESCHHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------------CCeEEEEcchHHHHHHHHHHHHHHh-
Confidence 4455666666777788999999999999999999988752 2369999999999999998877665
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHH
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~ 560 (633)
+..+...+|+.. ....++|+|+||++|+ ... .+.++++++|||||||+ ++.+|...+..|+.
T Consensus 282 ---g~~vg~~vG~~~--------~~~~~~IlV~TPGrLl---~~~---~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~ 343 (666)
T 3o8b_A 282 ---GIDPNIRTGVRT--------ITTGAPVTYSTYGKFL---ADG---GCSGGAYDIIICDECHS-TDSTTILGIGTVLD 343 (666)
T ss_dssp ---SCCCEEECSSCE--------ECCCCSEEEEEHHHHH---HTT---SCCTTSCSEEEETTTTC-CSHHHHHHHHHHHH
T ss_pred ---CCCeeEEECcEe--------ccCCCCEEEECcHHHH---hCC---CcccCcccEEEEccchh-cCccHHHHHHHHHH
Confidence 445666777654 2345799999999983 332 35678899999999965 56779999999999
Q ss_pred HCCCCCc--EEEEeccCChhhh
Q 006737 561 CLPRRRQ--SLLFSATMPKELV 580 (633)
Q Consensus 561 ~lpk~~Q--~IlfSATl~~el~ 580 (633)
.++..+| +++||||++..+.
T Consensus 344 ~l~~~~~~llil~SAT~~~~i~ 365 (666)
T 3o8b_A 344 QAETAGARLVVLATATPPGSVT 365 (666)
T ss_dssp HTTTTTCSEEEEEESSCTTCCC
T ss_pred hhhhcCCceEEEECCCCCcccc
Confidence 9988777 7778999998654
No 62
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.80 E-value=4.9e-19 Score=206.70 Aligned_cols=228 Identities=18% Similarity=0.145 Sum_probs=150.0
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCe
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~-grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~ 456 (633)
..+|.++++++.+.+.|...+ ..|+++|+.+|+.++. +++++++||||||||+ ++|++........ ..+.
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~------~~g~ 141 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPH------LENT 141 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGG------GGTC
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcccc------CCCc
Confidence 356999999999999999988 7899999999988775 5689999999999999 6777722211111 0135
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
+++|++|+|+||.|+++.+........+..++....... .....++|+|+|||+|.+.+... ..+.+++
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~-------~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~ 210 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN-------KTSNKTILKYMTDGMLLREAMED----HDLSRYS 210 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE-------ECCTTCSEEEEEHHHHHHHHHHS----TTCTTEE
T ss_pred eEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc-------ccCCCCCEEEECHHHHHHHHhhC----ccccCCC
Confidence 799999999999999987766543221222221111111 11234799999999999887654 4588999
Q ss_pred EEEEecccc-cCCcCh-HHHHHHHHHHCCCCCcEEEEeccCChhhh--ccccceEeeeccccccccCccceEEEeehh--
Q 006737 537 MLVLDEADH-LLDLGF-RKDVENIVDCLPRRRQSLLFSATMPKELV--LKREHTYIDTVGLGSVETPVKVSKYNIYVF-- 610 (633)
Q Consensus 537 ~LVIDEAD~-Lld~gf-~~~l~~Il~~lpk~~Q~IlfSATl~~el~--l~~~~~~i~~~~~~~~~~~~~V~q~~i~v~-- 610 (633)
+|||||||. .++..+ ...+..++... ++.|+|+||||++.+.. +.....++... .....++++|+.+.
T Consensus 211 ~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~-----gr~~pv~~~~~~~~~~ 284 (773)
T 2xau_A 211 CIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDAPLLAVP-----GRTYPVELYYTPEFQR 284 (773)
T ss_dssp EEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSCCEEECC-----CCCCCEEEECCSSCCS
T ss_pred EEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCCCccccc-----CcccceEEEEecCCch
Confidence 999999996 565432 33444454444 57999999999976521 11112222211 11224555554321
Q ss_pred ---------hHHHHhhcCCceEEEEEcccc
Q 006737 611 ---------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 611 ---------~l~~~~k~~~~~~LVFcnT~s 631 (633)
++..........+|||||++.
T Consensus 285 ~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~ 314 (773)
T 2xau_A 285 DYLDSAIRTVLQIHATEEAGDILLFLTGED 314 (773)
T ss_dssp CHHHHHHHHHHHHHHHSCSCEEEEECSCHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEECCCHH
Confidence 112222335679999999864
No 63
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.80 E-value=9.9e-20 Score=201.51 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=126.4
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
...|+++|.++++.++.+++++++++||+|||++|+++++..+.... .++|||+||++|+.|+++.+..+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~----------~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE----------GKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS----------SEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC----------CeEEEEECcHHHHHHHHHHHHHh
Confidence 34899999999999999999999999999999999999887765321 26999999999999999999877
Q ss_pred HhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHH
Q 006737 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (633)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~I 558 (633)
.. .+++.+..++|+.....+ ....++|+|+||+.|... . ...+.++.+|||||||++.. ..+..+
T Consensus 181 ~~-~~~~~v~~~~~~~~~~~~----~~~~~~I~i~T~~~l~~~---~---~~~~~~~~liIiDE~H~~~~----~~~~~i 245 (510)
T 2oca_A 181 RL-FSHAMIKKIGGGASKDDK----YKNDAPVVVGTWQTVVKQ---P---KEWFSQFGMMMNDECHLATG----KSISSI 245 (510)
T ss_dssp TS-SCGGGEEECGGGCCTTGG----GCTTCSEEEEEHHHHTTS---C---GGGGGGEEEEEEETGGGCCH----HHHHHH
T ss_pred hc-CCccceEEEecCCccccc----cccCCcEEEEeHHHHhhc---h---hhhhhcCCEEEEECCcCCCc----ccHHHH
Confidence 43 335788888888765433 234579999999976432 1 24567899999999999875 467778
Q ss_pred HHHCCCCCcEEEEeccCChh
Q 006737 559 VDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 559 l~~lpk~~Q~IlfSATl~~e 578 (633)
+..+++..++++||||.++.
T Consensus 246 l~~~~~~~~~l~lSATp~~~ 265 (510)
T 2oca_A 246 ISGLNNCMFKFGLSGSLRDG 265 (510)
T ss_dssp GGGCTTCCEEEEEESCGGGC
T ss_pred HHhcccCcEEEEEEeCCCCC
Confidence 88888889999999999766
No 64
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.79 E-value=8.7e-21 Score=218.18 Aligned_cols=154 Identities=18% Similarity=0.260 Sum_probs=105.8
Q ss_pred HHHcCCC-----CCcHHHH-----HHHHHHh------CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeE
Q 006737 394 LTAAGYI-----QMTRVQE-----ATLSACL------EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457 (633)
Q Consensus 394 L~~~g~~-----~pt~iQ~-----~aIp~il------~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~ 457 (633)
|..+||. .||++|+ .+||.++ .++|+|++||||||||++|++|+++.+... +++
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~----------~~~ 272 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK----------RLR 272 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT----------TCC
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCc
Confidence 3445666 8999999 9999988 899999999999999999999999887653 246
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccC-----ccccc
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG-----LSVRL 532 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~-----~~~~L 532 (633)
+|||+||++||.|+++.+..+ ++. ...+. +. .++||+++++++..... ....+
T Consensus 273 ~lilaPTr~La~Q~~~~l~~~-----~i~--~~~~~---------l~------~v~tp~~ll~~l~~~~l~~~l~~~~~l 330 (673)
T 2wv9_A 273 TAVLAPTRVVAAEMAEALRGL-----PVR--YLTPA---------VQ------REHSGNEIVDVMCHATLTHRLMSPLRV 330 (673)
T ss_dssp EEEEESSHHHHHHHHHHTTTS-----CCE--ECCC------------------CCCCSCCCEEEEEHHHHHHHHHSSSCC
T ss_pred EEEEccHHHHHHHHHHHHhcC-----Cee--eeccc---------cc------ccCCHHHHHHHHHhhhhHHHHhccccc
Confidence 999999999999999877643 221 11100 00 14555555433221100 01357
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCC-CCCcEEEEeccCChhhh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKELV 580 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp-k~~Q~IlfSATl~~el~ 580 (633)
.++++|||||||++ +..+...+..+...++ ..+|+|+||||+++.+.
T Consensus 331 ~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~ 378 (673)
T 2wv9_A 331 PNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSD 378 (673)
T ss_dssp CCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred ccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhh
Confidence 89999999999998 3333344444444443 67999999999998853
No 65
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.78 E-value=1e-19 Score=199.39 Aligned_cols=134 Identities=19% Similarity=0.256 Sum_probs=96.7
Q ss_pred HHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEE
Q 006737 412 ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491 (633)
Q Consensus 412 ~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~ 491 (633)
.+++|+|+++++|||||||++|++|+++.+... ++++||++||++||.|+++.+..+ .+....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----------~~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~ 66 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR----------RLRTLVLAPTRVVLSEMKEAFHGL-------DVKFHT 66 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTTTS-------CEEEES
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----------CCeEEEEcchHHHHHHHHHHHhcC-------CeEEec
Confidence 467899999999999999999999999987654 246999999999999999877632 222111
Q ss_pred CCccchHHHHHHhcCCCcE-EEECchhhHHHHhccc-----CcccccCCeeEEEEecccccCCcChHHHHHHHHHHC-CC
Q 006737 492 GGTRFKVDQRRLESDPCQI-LVATPGRLLDHIENKS-----GLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL-PR 564 (633)
Q Consensus 492 Gg~~~~~~~~~l~~~~~dI-LIaTPgrLl~lL~~~~-----~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~l-pk 564 (633)
+ .+ +|+||+++++++.... .....+.++++|||||||++ +.++...+..+...+ +.
T Consensus 67 ~----------------~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~ 129 (440)
T 1yks_A 67 Q----------------AFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARAN 129 (440)
T ss_dssp S----------------CCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred c----------------cceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccC
Confidence 1 11 3788887765443221 00123789999999999998 444544444444433 36
Q ss_pred CCcEEEEeccCChhh
Q 006737 565 RRQSLLFSATMPKEL 579 (633)
Q Consensus 565 ~~Q~IlfSATl~~el 579 (633)
++|+++||||+++.+
T Consensus 130 ~~~~l~~SAT~~~~~ 144 (440)
T 1yks_A 130 ESATILMTATPPGTS 144 (440)
T ss_dssp SCEEEEECSSCTTCC
T ss_pred CceEEEEeCCCCchh
Confidence 799999999998875
No 66
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.77 E-value=4.1e-19 Score=195.61 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=97.5
Q ss_pred HHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEE
Q 006737 410 LSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT 489 (633)
Q Consensus 410 Ip~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~ 489 (633)
...+..++++|+++|||||||++|++|+++.+... ++++|||+|||+||.|+++.+. ++.+..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~ 77 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----------RLRTAVLAPTRVVAAEMAEALR-------GLPVRY 77 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEECSHHHHHHHHHHTT-------TSCEEE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----------CCcEEEECchHHHHHHHHHHhc-------CceEeE
Confidence 44567789999999999999999999999988653 2469999999999999998875 233322
Q ss_pred EECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccccc-----CCcChHHHHHHHHHHCCC
Q 006737 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL-----LDLGFRKDVENIVDCLPR 564 (633)
Q Consensus 490 l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~L-----ld~gf~~~l~~Il~~lpk 564 (633)
..+.... ....+..|.++|.+.+...+... ..+.++++|||||||++ +..+|...+. .++
T Consensus 78 ~~~~~~~------~~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~ 142 (459)
T 2z83_A 78 QTSAVQR------EHQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELG 142 (459)
T ss_dssp CC--------------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTT
T ss_pred Eeccccc------CCCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccC
Confidence 2211110 01223357788888887766544 45789999999999984 3333322221 236
Q ss_pred CCcEEEEeccCChhhh
Q 006737 565 RRQSLLFSATMPKELV 580 (633)
Q Consensus 565 ~~Q~IlfSATl~~el~ 580 (633)
++|+|+||||++..+.
T Consensus 143 ~~~~il~SAT~~~~~~ 158 (459)
T 2z83_A 143 EAAAIFMTATPPGTTD 158 (459)
T ss_dssp SCEEEEECSSCTTCCC
T ss_pred CccEEEEEcCCCcchh
Confidence 8999999999998753
No 67
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.75 E-value=4.7e-18 Score=185.70 Aligned_cols=138 Identities=18% Similarity=0.202 Sum_probs=98.8
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCc
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~ 494 (633)
.|+|+++++|||||||++|++|+++.+.... .++|||+||++||.|+++.+. ++.+..+.|+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g----------~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~ 63 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKR----------LRTVILAPTRVVASEMYEALR-------GEPIRYMTPAV 63 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTT----------CCEEEEESSHHHHHHHHHHTT-------TSCEEEC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCC----------CCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCc
Confidence 3789999999999999999999997776532 369999999999999887664 44555554432
Q ss_pred cchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHC-CCCCcEEEEec
Q 006737 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL-PRRRQSLLFSA 573 (633)
Q Consensus 495 ~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~l-pk~~Q~IlfSA 573 (633)
.. ......-+.++|.+.+...+... ..+.++.+|||||||++ +.++...+..+.... +..+|+|+|||
T Consensus 64 ~~------~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SA 132 (431)
T 2v6i_A 64 QS------ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTA 132 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEES
T ss_pred cc------cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 21 11222457778888887666543 45789999999999997 444555555555443 56899999999
Q ss_pred cCChhhh
Q 006737 574 TMPKELV 580 (633)
Q Consensus 574 Tl~~el~ 580 (633)
|+++.+.
T Consensus 133 T~~~~~~ 139 (431)
T 2v6i_A 133 TPPGTTE 139 (431)
T ss_dssp SCTTCCC
T ss_pred CCCcchh
Confidence 9998753
No 68
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.75 E-value=7.8e-18 Score=184.51 Aligned_cols=137 Identities=24% Similarity=0.216 Sum_probs=113.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
..|+++|.++++.++.+++++++++||+|||++|++++... +.++|||+||++|+.|+++.+..+
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 37999999999999999999999999999999999987653 125999999999999999998883
Q ss_pred hcCCCce-EEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHH
Q 006737 480 KNHDGIG-VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (633)
Q Consensus 480 ~~~~~i~-v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~I 558 (633)
++. +.+++|+... .++|+|+||+.|...+... ..++.+|||||||++.+.+|.. +
T Consensus 157 ----~~~~v~~~~g~~~~----------~~~Ivv~T~~~l~~~~~~~------~~~~~liIvDEaH~~~~~~~~~----~ 212 (472)
T 2fwr_A 157 ----GEEYVGEFSGRIKE----------LKPLTVSTYDSAYVNAEKL------GNRFMLLIFDEVHHLPAESYVQ----I 212 (472)
T ss_dssp ----CGGGEEEBSSSCBC----------CCSEEEEEHHHHHHTHHHH------TTTCSEEEEETGGGTTSTTTHH----H
T ss_pred ----CCcceEEECCCcCC----------cCCEEEEEcHHHHHHHHHh------cCCCCEEEEECCcCCCChHHHH----H
Confidence 677 8888887653 3689999999988766421 2468999999999999887654 4
Q ss_pred HHHCCCCCcEEEEeccCC
Q 006737 559 VDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 559 l~~lpk~~Q~IlfSATl~ 576 (633)
+..++ ..++++||||..
T Consensus 213 ~~~~~-~~~~l~lSATp~ 229 (472)
T 2fwr_A 213 AQMSI-APFRLGLTATFE 229 (472)
T ss_dssp HHTCC-CSEEEEEESCCC
T ss_pred HHhcC-CCeEEEEecCcc
Confidence 55553 678999999997
No 69
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.74 E-value=1.6e-17 Score=167.45 Aligned_cols=139 Identities=24% Similarity=0.226 Sum_probs=110.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
..|+++|.+++..++.++++++++|||+|||++++.++... +.++||++|+++|+.|+++.+..+
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~~- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHHHHHHGGG-
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHHHHHHHhC-
Confidence 47999999999999999999999999999999988776532 124999999999999999888773
Q ss_pred hcCCCce-EEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHH
Q 006737 480 KNHDGIG-VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (633)
Q Consensus 480 ~~~~~i~-v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~I 558 (633)
++. +..+.|+... ..+|+|+|++.+...+... ...+++|||||||++.+..+. .+
T Consensus 157 ----~~~~v~~~~g~~~~----------~~~i~v~T~~~l~~~~~~~------~~~~~llIiDEaH~l~~~~~~----~i 212 (237)
T 2fz4_A 157 ----GEEYVGEFSGRIKE----------LKPLTVSTYDSAYVNAEKL------GNRFMLLIFDEVHHLPAESYV----QI 212 (237)
T ss_dssp ----CGGGEEEESSSCBC----------CCSEEEEEHHHHHHTHHHH------TTTCSEEEEECSSCCCTTTHH----HH
T ss_pred ----CCCeEEEEeCCCCC----------cCCEEEEeHHHHHhhHHHh------cccCCEEEEECCccCCChHHH----HH
Confidence 566 7777776542 3589999999987665421 246899999999999876544 45
Q ss_pred HHHCCCCCcEEEEeccCChh
Q 006737 559 VDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 559 l~~lpk~~Q~IlfSATl~~e 578 (633)
+..++ ..++++||||....
T Consensus 213 ~~~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 213 AQMSI-APFRLGLTATFERE 231 (237)
T ss_dssp HHTCC-CSEEEEEEESCC--
T ss_pred HHhcc-CCEEEEEecCCCCC
Confidence 55554 67899999998754
No 70
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.71 E-value=1.3e-17 Score=192.75 Aligned_cols=133 Identities=21% Similarity=0.217 Sum_probs=110.8
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
+|+ .|+++|..++|.++.|+ |++++||+|||++|+||++...+.. .+|+||+||++||.|+++.+.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G-----------~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG-----------KGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC-----------SCCEEEESSHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC-----------CCEEEEeCCHHHHHHHHHHHH
Confidence 689 99999999999999998 9999999999999999996544321 249999999999999999999
Q ss_pred HHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhh-HHHHhcccC---cccccC---CeeEEEEecccccC
Q 006737 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL-LDHIENKSG---LSVRLM---GLKMLVLDEADHLL 547 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrL-l~lL~~~~~---~~~~Ls---~l~~LVIDEAD~Ll 547 (633)
.++.++ ++++++++||.+....... . .+||+|+||++| .++|...-. ....++ .+.++||||||.||
T Consensus 142 ~l~~~l-GLsv~~i~Gg~~~~~r~~a--y-~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 142 PVYRGL-GLSVGVIQHASTPAERRKA--Y-LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHTT-TCCEEECCTTCCHHHHHHH--H-TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHhc-CCeEEEEeCCCCHHHHHHH--c-CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999876 8999999999874432222 2 489999999999 888876521 124577 89999999999987
No 71
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.62 E-value=5.2e-16 Score=175.27 Aligned_cols=160 Identities=14% Similarity=0.134 Sum_probs=91.4
Q ss_pred CCCcHHHHHHHHHHhC----C-CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHH-H
Q 006737 400 IQMTRVQEATLSACLE----G-KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA-A 473 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~----g-rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~-~ 473 (633)
..|+++|.++++.++. + ++++++++||+|||++++ +++..+....... .......++|||+||++|+.|++ +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~~~-~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARWNR-TGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTCCS-SCSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhccccc-ccccCCCeEEEEeCCHHHHHHHHHH
Confidence 3799999999999876 4 679999999999999954 4555555442100 01112357999999999999998 6
Q ss_pred HHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccC-cccccCCeeEEEEecccccCCcChH
Q 006737 474 EAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG-LSVRLMGLKMLVLDEADHLLDLGFR 552 (633)
Q Consensus 474 ~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~-~~~~Ls~l~~LVIDEAD~Lld~gf~ 552 (633)
.+..+ +..+..+.++. .....+|+|+||++|...+..... ..+....+++|||||||++...+ .
T Consensus 255 ~~~~~-----~~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~ 319 (590)
T 3h1t_A 255 TFTPF-----GDARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-N 319 (590)
T ss_dssp CCTTT-----CSSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC--------
T ss_pred HHHhc-----chhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-h
Confidence 66544 22333333321 123469999999999887642211 12345678999999999997642 3
Q ss_pred HHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 553 KDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 553 ~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
..+..++..++ ..++|+||||...
T Consensus 320 ~~~~~il~~~~-~~~~l~lTATP~~ 343 (590)
T 3h1t_A 320 SNWREILEYFE-PAFQIGMTATPLR 343 (590)
T ss_dssp --CHHHHHHST-TSEEEEEESSCSC
T ss_pred HHHHHHHHhCC-cceEEEecccccc
Confidence 56677777776 4789999999764
No 72
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.59 E-value=6.6e-16 Score=177.61 Aligned_cols=138 Identities=17% Similarity=0.075 Sum_probs=104.0
Q ss_pred HHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCc
Q 006737 406 QEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI 485 (633)
Q Consensus 406 Q~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i 485 (633)
|.......+.+++++++||||||||+ ++++.+.... .+||++|||+||.|+++.+..+ ++
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~-----------~gl~l~PtR~LA~Qi~~~l~~~-----g~ 204 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK-----------SGVYCGPLKLLAHEIFEKSNAA-----GV 204 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS-----------SEEEEESSHHHHHHHHHHHHHT-----TC
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC-----------CeEEEeCHHHHHHHHHHHHHhc-----CC
Confidence 33344456789999999999999998 4555555442 2689999999999999998775 67
Q ss_pred eEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCC-C
Q 006737 486 GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP-R 564 (633)
Q Consensus 486 ~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp-k 564 (633)
.+.+++|+..... .......+++++|++.+ ..+..+++|||||||++++.+|...+..++..++ .
T Consensus 205 ~v~lltG~~~~iv---~TpGr~~~il~~T~e~~-----------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~ 270 (677)
T 3rc3_A 205 PCDLVTGEERVTV---QPNGKQASHVSCTVEMC-----------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAE 270 (677)
T ss_dssp CEEEECSSCEECC---STTCCCCSEEEEEGGGC-----------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEE
T ss_pred cEEEEECCeeEEe---cCCCcccceeEecHhHh-----------hhcccCCEEEEecceecCCccchHHHHHHHHccCcc
Confidence 8888888765411 00001245666666443 1246789999999999999999999999999888 6
Q ss_pred CCcEEEEeccCCh
Q 006737 565 RRQSLLFSATMPK 577 (633)
Q Consensus 565 ~~Q~IlfSATl~~ 577 (633)
..|++++|||.+.
T Consensus 271 ~i~il~~SAT~~~ 283 (677)
T 3rc3_A 271 EVHLCGEPAAIDL 283 (677)
T ss_dssp EEEEEECGGGHHH
T ss_pred ceEEEeccchHHH
Confidence 8899999999643
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.59 E-value=2.6e-15 Score=179.63 Aligned_cols=156 Identities=19% Similarity=0.155 Sum_probs=115.6
Q ss_pred CCcHHHHHHHHHHhC--------------CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHH
Q 006737 401 QMTRVQEATLSACLE--------------GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE 466 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~--------------grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTRe 466 (633)
.|+++|..|++.++. +++++++++||||||+++ ++++..+ .... ...++|||+|+++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll-~~~~-------~~~rvLvlvpr~e 341 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLA-TELD-------FIDKVFFVVDRKD 341 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHH-TTCT-------TCCEEEEEECGGG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHH-HhcC-------CCceEEEEeCcHH
Confidence 599999999999875 368999999999999997 6666443 2211 1247999999999
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccccc
Q 006737 467 LASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546 (633)
Q Consensus 467 La~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~L 546 (633)
|+.|+.+.+..+... .+.++.+.......+....++|+|+||++|..++...... ..+....+|||||||++
T Consensus 342 L~~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~-~~~~~~~lvIiDEAHrs 413 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDL-PVYNQQVVFIFDECHRS 413 (1038)
T ss_dssp CCHHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCC-GGGGSCEEEEEESCCTT
T ss_pred HHHHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccch-hccccccEEEEEccchh
Confidence 999999988876532 1234444444445555556799999999999987653211 23557889999999997
Q ss_pred CCcChHHHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 547 LDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 547 ld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
.. ...+..|+..++ +.++++||||...
T Consensus 414 ~~---~~~~~~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 414 QF---GEAQKNLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp HH---HHHHHHHHHHCS-SEEEEEEESSCCC
T ss_pred cc---hHHHHHHHHhCC-cccEEEEeCCccc
Confidence 63 344566777776 4799999999864
No 74
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.52 E-value=9.2e-15 Score=164.43 Aligned_cols=131 Identities=19% Similarity=0.121 Sum_probs=98.1
Q ss_pred CCcHHHHHHHHH----HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSA----CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 401 ~pt~iQ~~aIp~----il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.++|.|.+++.. +..|+++++.||||+|||++|++|++.. +.++||++||++|+.|+.+++.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------KPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------------CSEEEEEESSGGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------------CCeEEEEcCCHHHHHHHHHHHH
Confidence 689999987764 5679999999999999999999999861 2479999999999999998888
Q ss_pred HHHhcCCCceEEEEECCccc---------------------------------hHHHH-----------------HHhcC
Q 006737 477 ALLKNHDGIGVLTLVGGTRF---------------------------------KVDQR-----------------RLESD 506 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~~~---------------------------------~~~~~-----------------~l~~~ 506 (633)
.+.... ++++.++.|...+ ..... .....
T Consensus 69 ~l~~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 69 KIREKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TCCCSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHhhhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 776544 6778777774321 00010 11112
Q ss_pred CCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCC
Q 006737 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548 (633)
Q Consensus 507 ~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld 548 (633)
.++|||+|+..|++.+.... .. ......+|||||||.|.+
T Consensus 148 ~adIVV~~~~~l~~~~~~~~-~~-~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREF-ID-IDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTT-SC-CCSTTEEEEETTGGGGGG
T ss_pred cCCEEEeCchHhcCHHHHHh-cC-CCcCCeEEEEecccchHH
Confidence 47999999999998764432 11 124677999999999987
No 75
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.42 E-value=1.5e-13 Score=154.40 Aligned_cols=132 Identities=23% Similarity=0.237 Sum_probs=86.3
Q ss_pred cCCCCCcHHHHHHHH----HHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLS----ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp----~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~ 472 (633)
.|| .|+++|.+++. .+..|+++++.||||+|||++|++|++.. ..++||++||++|+.|++
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~ 68 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIY 68 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHH
Confidence 466 89999999865 45689999999999999999999998753 136999999999999999
Q ss_pred HHHHHHHhcCCCceEEEEECCccc--------hH------------------------HHHH--------------HhcC
Q 006737 473 AEAIALLKNHDGIGVLTLVGGTRF--------KV------------------------DQRR--------------LESD 506 (633)
Q Consensus 473 ~~l~~l~~~~~~i~v~~l~Gg~~~--------~~------------------------~~~~--------------l~~~ 506 (633)
+.+..+ ++++..+.|.... .. .... ....
T Consensus 69 ~~~~~l-----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~ 143 (540)
T 2vl7_A 69 KNAKLL-----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLK 143 (540)
T ss_dssp HHHGGG-----TCCEEEC---------------------------------------------------------CTTGG
T ss_pred HHHHhc-----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhh
Confidence 887764 3444444432210 00 0000 0012
Q ss_pred CCcEEEECchhhHHHHhcccCc----ccccCCeeEEEEecccccCC
Q 006737 507 PCQILVATPGRLLDHIENKSGL----SVRLMGLKMLVLDEADHLLD 548 (633)
Q Consensus 507 ~~dILIaTPgrLl~lL~~~~~~----~~~Ls~l~~LVIDEAD~Lld 548 (633)
.++|||+|+..|++.+...... ...+....+|||||||.|.+
T Consensus 144 ~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 144 DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 4699999999998755432100 00245678999999999953
No 76
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.39 E-value=6.4e-13 Score=146.46 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=106.9
Q ss_pred CCCcHHHHHHHHHH----hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSAC----LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 400 ~~pt~iQ~~aIp~i----l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
..|+|+|.+++..+ ..++++|++.+||+|||++++. ++..+..... ..++|||||+ .|+.|..+++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~~~--------~~~~LIv~P~-~l~~qw~~e~ 105 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKENE--------LTPSLVICPL-SVLKNWEEEL 105 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHTTC--------CSSEEEEECS-TTHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhcCC--------CCCEEEEccH-HHHHHHHHHH
Confidence 36999999999876 3578999999999999998654 4444443321 1249999994 6899999999
Q ss_pred HHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHH
Q 006737 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555 (633)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l 555 (633)
.+++. .+.+.+++|+... ......+|+|+|++.|..... +....+++|||||||++.+.. ...
T Consensus 106 ~~~~~---~~~v~~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~kn~~--~~~ 168 (500)
T 1z63_A 106 SKFAP---HLRFAVFHEDRSK------IKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNIKNPQ--TKI 168 (500)
T ss_dssp HHHCT---TSCEEECSSSTTS------CCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGGSCTT--SHH
T ss_pred HHHCC---CceEEEEecCchh------ccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCccccCCHh--HHH
Confidence 88753 5677777766532 111236999999999865432 223468899999999997653 234
Q ss_pred HHHHHHCCCCCcEEEEeccCCh
Q 006737 556 ENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 556 ~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
...+..++ ..+.+++|||...
T Consensus 169 ~~~l~~l~-~~~~l~LTaTP~~ 189 (500)
T 1z63_A 169 FKAVKELK-SKYRIALTGTPIE 189 (500)
T ss_dssp HHHHHTSC-EEEEEEECSSCST
T ss_pred HHHHHhhc-cCcEEEEecCCCC
Confidence 44555554 4578999999743
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.30 E-value=2.7e-12 Score=153.37 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=106.4
Q ss_pred CCCcHHHHHHHHHHhCC--CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~g--rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
..|+|+|..++..++.. ..+|++.+||+|||++++..+...+..... -++|||||+ .|+.|...++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~---------~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA---------ERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSC---------CCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCC---------CeEEEEeCH-HHHHHHHHHHHH
Confidence 47999999999988764 489999999999999987766555433221 249999999 999999999877
Q ss_pred HHhcCCCceEEEEECCccchHHHHH-HhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChH--HH
Q 006737 478 LLKNHDGIGVLTLVGGTRFKVDQRR-LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR--KD 554 (633)
Q Consensus 478 l~~~~~~i~v~~l~Gg~~~~~~~~~-l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~--~~ 554 (633)
.+ ++.+.++.|+......... ......+|+|+|++.|....... ..+....+.+|||||||++...+.. ..
T Consensus 222 ~f----~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~--~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 222 RF----NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRL--EHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HS----CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTT--HHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred Hh----CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHH--HHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 65 4556555544322111110 11124689999998875421110 0133457899999999999764421 11
Q ss_pred HHHHHHHCCCCCcEEEEeccCC
Q 006737 555 VENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 555 l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
+..+.....+..+++++|||.-
T Consensus 296 ~~~l~~L~~~~~~~L~LTATPi 317 (968)
T 3dmq_A 296 YQAIEQLAEHVPGVLLLTATPE 317 (968)
T ss_dssp HHHHHHHHTTCSSEEESCSSCS
T ss_pred HHHHHHHhhcCCcEEEEEcCCc
Confidence 2222223334567999999974
No 78
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.18 E-value=5.6e-11 Score=139.34 Aligned_cols=156 Identities=12% Similarity=0.166 Sum_probs=109.2
Q ss_pred CCCcHHHHHHHHHHh----CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACL----EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il----~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
..++++|.+++..++ .++++|++.+||.|||+..+..+...+...... ..+||||| ..|+.|..+++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~--------~~~LIV~P-~sll~qW~~E~ 305 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQN--------GPHIIVVP-LSTMPAWLDTF 305 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCC--------SCEEEECC-TTTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCC--------CCEEEEEC-chHHHHHHHHH
Confidence 379999999998665 788999999999999998665444333332211 13899999 77888998888
Q ss_pred HHHHhcCCCceEEEEECCccchHHHHHH-----------hcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccc
Q 006737 476 IALLKNHDGIGVLTLVGGTRFKVDQRRL-----------ESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (633)
Q Consensus 476 ~~l~~~~~~i~v~~l~Gg~~~~~~~~~l-----------~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD 544 (633)
.+++ +++.+.+++|+.......... ....++|+|+|++.+...... +......+|||||||
T Consensus 306 ~~~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-----l~~~~w~~vIvDEaH 377 (800)
T 3mwy_W 306 EKWA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-----LGSIKWQFMAVDEAH 377 (800)
T ss_dssp HHHS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-----HHTSEEEEEEETTGG
T ss_pred HHHC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH-----HhcCCcceeehhhhh
Confidence 8775 477888888876544333221 223578999999999765432 222367899999999
Q ss_pred ccCCcChHHHHHHHHHHCCCCCcEEEEeccC
Q 006737 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (633)
Q Consensus 545 ~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl 575 (633)
++-+.. ..+...+..++ ....+++|||.
T Consensus 378 ~lkn~~--s~~~~~l~~l~-~~~rl~LTgTP 405 (800)
T 3mwy_W 378 RLKNAE--SSLYESLNSFK-VANRMLITGTP 405 (800)
T ss_dssp GGCCSS--SHHHHHHTTSE-EEEEEEECSCC
T ss_pred hhcCch--hHHHHHHHHhh-hccEEEeeCCc
Confidence 996432 23444444443 34568899997
No 79
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.17 E-value=2.5e-11 Score=138.55 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=67.8
Q ss_pred CCcHHHHHHHH----HHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 401 QMTRVQEATLS----ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 401 ~pt~iQ~~aIp----~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
+|++.|.+.+. .+.+|+++++.||||+|||++|++|++..+.... .++||++||++|+.|+.+.+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~----------~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK----------LKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT----------CEEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC----------CeEEEECCCHHHHHHHHHHHH
Confidence 57899988875 5668999999999999999999999999876532 479999999999999999999
Q ss_pred HHHhcCCCceEEEEECCc
Q 006737 477 ALLKNHDGIGVLTLVGGT 494 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg~ 494 (633)
.+.... .+++..+.|+.
T Consensus 73 ~l~~~~-~~~~~~l~gr~ 89 (620)
T 4a15_A 73 SLSSTM-KIRAIPMQGRV 89 (620)
T ss_dssp HHHHHS-CCCEEECCCHH
T ss_pred HHhhcc-CeEEEEEECCC
Confidence 887654 67776666643
No 80
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.14 E-value=5.5e-10 Score=127.91 Aligned_cols=161 Identities=16% Similarity=0.197 Sum_probs=107.2
Q ss_pred CCcHHHHHHHHHHh---------CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHH
Q 006737 401 QMTRVQEATLSACL---------EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471 (633)
Q Consensus 401 ~pt~iQ~~aIp~il---------~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi 471 (633)
.+.|+|.+++..+. .+..+|+..+||+|||+..+..+... ....... .....++|||+|+ .|+.|.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l-~~~~~~~---~p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTL-LKQSPDC---KPEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHH-HHCCTTS---SCSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHH-HHhCccc---cCCCCcEEEEecH-HHHHHH
Confidence 68999999998874 45689999999999999876655443 3322110 0011248999997 899999
Q ss_pred HHHHHHHHhcCCCceEEEEECCccchHH--HHHHhc-----CCCcEEEECchhhHHHHhcccCcccccCCeeEEEEeccc
Q 006737 472 AAEAIALLKNHDGIGVLTLVGGTRFKVD--QRRLES-----DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (633)
Q Consensus 472 ~~~l~~l~~~~~~i~v~~l~Gg~~~~~~--~~~l~~-----~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD 544 (633)
.+++.+++.. .+.+..++++...... ...... ...+|+|+|++.+...... +....+.+|||||||
T Consensus 130 ~~E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~-----l~~~~~~~vI~DEaH 202 (644)
T 1z3i_X 130 YNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV-----LHKGKVGLVICDEGH 202 (644)
T ss_dssp HHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT-----TTTSCCCEEEETTGG
T ss_pred HHHHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH-----hhcCCccEEEEECce
Confidence 9999998753 3566667776543221 111111 1368999999998765421 223467899999999
Q ss_pred ccCCcChHHHHHHHHHHCCCCCcEEEEeccCC
Q 006737 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 545 ~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
++-+.. ......+..++ ....+++|||.-
T Consensus 203 ~ikn~~--~~~~~al~~l~-~~~rl~LTgTPi 231 (644)
T 1z3i_X 203 RLKNSD--NQTYLALNSMN-AQRRVLISGTPI 231 (644)
T ss_dssp GCCTTC--HHHHHHHHHHC-CSEEEEECSSCS
T ss_pred ecCChh--hHHHHHHHhcc-cCcEEEEecCcc
Confidence 997543 22333333443 456899999963
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.88 E-value=1e-08 Score=117.25 Aligned_cols=133 Identities=23% Similarity=0.180 Sum_probs=99.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 397 ~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
.|. .|+++|.-..-.+..|+ |+.+.||+|||+++.+|++-..+.. ..|.||+||+.||.|-++.+.
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G-----------~~vhVvT~ndyLA~rdae~m~ 137 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIG-----------KGVHLVTVNDYLARRDALWMG 137 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTS-----------SCEEEEESSHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcC-----------CceEEEeccHHHHHhHHHHHH
Confidence 344 68999999998898887 9999999999999999997444332 248999999999999999999
Q ss_pred HHHhcCCCceEEEEECC--------------------------------------------------ccchHHHHHHhcC
Q 006737 477 ALLKNHDGIGVLTLVGG--------------------------------------------------TRFKVDQRRLESD 506 (633)
Q Consensus 477 ~l~~~~~~i~v~~l~Gg--------------------------------------------------~~~~~~~~~l~~~ 506 (633)
.+..++ |+.|++++.. ..... .+...
T Consensus 138 ~l~~~L-glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e-rr~aY-- 213 (822)
T 3jux_A 138 PVYLFL-GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT-RKEAY-- 213 (822)
T ss_dssp HHHHHT-TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC-HHHHH--
T ss_pred HHHHHh-CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH-HHHHh--
Confidence 998877 8999998872 11111 11111
Q ss_pred CCcEEEECchhh-HHHHhcccC---cccccCCeeEEEEecccccC
Q 006737 507 PCQILVATPGRL-LDHIENKSG---LSVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 507 ~~dILIaTPgrL-l~lL~~~~~---~~~~Ls~l~~LVIDEAD~Ll 547 (633)
.|||.++|..-| .++|...-. .......+.+.||||+|.+|
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 379999999877 455543210 11224678899999999775
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.74 E-value=1.9e-08 Score=114.46 Aligned_cols=145 Identities=21% Similarity=0.306 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCCch--hhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 403 TRVQEATLSACLEGKDAVVKAKTGTGKS--IAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 403 t~iQ~~aIp~il~grDvLv~ApTGSGKT--laylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
++.|+.+++.++.+++++++|++||||| ++++++++..+... .+.++++++||..+|.++.+.+.....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~---------~~~~vll~APTg~AA~~L~e~~~~~~~ 221 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG---------ERCRIRLAAPTGKAAARLTESLGKALR 221 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS---------CCCCEEEEBSSHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc---------CCCeEEEEeCChhHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999 66777776543111 134699999999999999888776654
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHH
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~ 560 (633)
.. ++..... .+... ....+ -.++-.+|+.. . +.... .....+++||||||+. ++ ...+..|+.
T Consensus 222 ~l-~l~~~~~-~~~~~--~~~Ti----h~ll~~~~~~~-~-~~~~~---~~~l~~d~lIIDEAsm-l~---~~~~~~Ll~ 284 (608)
T 1w36_D 222 QL-PLTDEQK-KRIPE--DASTL----HRLLGAQPGSQ-R-LRHHA---GNPLHLDVLVVDEASM-ID---LPMMSRLID 284 (608)
T ss_dssp HS-SCCSCCC-CSCSC--CCBTT----TSCC-------------CT---TSCCSCSEEEECSGGG-CB---HHHHHHHHH
T ss_pred cC-CCCHHHH-hccch--hhhhh----HhhhccCCCch-H-HHhcc---CCCCCCCEEEEechhh-CC---HHHHHHHHH
Confidence 33 2110000 00000 00000 01222223221 1 11110 1123788999999994 44 457788899
Q ss_pred HCCCCCcEEEEec
Q 006737 561 CLPRRRQSLLFSA 573 (633)
Q Consensus 561 ~lpk~~Q~IlfSA 573 (633)
.++...|+|++.=
T Consensus 285 ~l~~~~~liLvGD 297 (608)
T 1w36_D 285 ALPDHARVIFLGD 297 (608)
T ss_dssp TCCTTCEEEEEEC
T ss_pred hCCCCCEEEEEcc
Confidence 9999999999853
No 83
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.83 E-value=0.00012 Score=83.33 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=54.3
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
+..+++.|..|+..++...-++|+||+|||||.+. ..++..+.... +.++|+++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~~---------~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQG---------NGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTSS---------SCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHcC---------CCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45789999999999998888899999999999863 33444444321 135999999999999988777543
No 84
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.81 E-value=8.2e-05 Score=84.07 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=78.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.+++.|..++..++.++.+++.|+.|||||... ..++..+... +.++++++||...+..+.+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~----------g~~Vl~~ApT~~Aa~~L~e~~----- 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAESL----------GLEVGLCAPTGKAARRLGEVT----- 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhc----------CCeEEEecCcHHHHHHhHhhh-----
Confidence 689999999999999999999999999999752 2233333322 135899999999998765432
Q ss_pred cCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHH
Q 006737 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560 (633)
Q Consensus 481 ~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~ 560 (633)
+..... ...+.. + .|..+ ... .......++||||||+.+.. ..+..++.
T Consensus 253 ---~~~a~T----------ih~ll~----~---~~~~~----~~~---~~~~~~~dvlIIDEasml~~----~~~~~Ll~ 301 (574)
T 3e1s_A 253 ---GRTAST----------VHRLLG----Y---GPQGF----RHN---HLEPAPYDLLIVDEVSMMGD----ALMLSLLA 301 (574)
T ss_dssp ---TSCEEE----------HHHHTT----E---ETTEE----SCS---SSSCCSCSEEEECCGGGCCH----HHHHHHHT
T ss_pred ---cccHHH----------HHHHHc----C---Ccchh----hhh---hcccccCCEEEEcCccCCCH----HHHHHHHH
Confidence 111111 011110 0 00000 000 11233678999999998753 36677778
Q ss_pred HCCCCCcEEEEe
Q 006737 561 CLPRRRQSLLFS 572 (633)
Q Consensus 561 ~lpk~~Q~IlfS 572 (633)
.++...++|++.
T Consensus 302 ~~~~~~~lilvG 313 (574)
T 3e1s_A 302 AVPPGARVLLVG 313 (574)
T ss_dssp TSCTTCEEEEEE
T ss_pred hCcCCCEEEEEe
Confidence 888777777764
No 85
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.80 E-value=5.7e-05 Score=82.73 Aligned_cols=138 Identities=14% Similarity=0.201 Sum_probs=80.7
Q ss_pred HHcCCCCCcHHHHHHHHHHhCC----C-cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHH
Q 006737 395 TAAGYIQMTRVQEATLSACLEG----K-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469 (633)
Q Consensus 395 ~~~g~~~pt~iQ~~aIp~il~g----r-DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~ 469 (633)
.-+.|..+++-|++++..++.. . .+++.|+.|||||.+ +..++..+..... ..+++++||...|.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~~---------~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTGE---------TGIILAAPTHAAKK 88 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTTC---------CCEEEEESSHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcCC---------ceEEEecCcHHHHH
Confidence 4467889999999999977543 3 899999999999964 3344555544322 13889999999887
Q ss_pred HHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhc-CCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCC
Q 006737 470 QIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES-DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548 (633)
Q Consensus 470 Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~-~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld 548 (633)
.+.+.+ ++.+..++.-... .... .....+.. .. ...+...++|||||++.+.
T Consensus 89 ~l~~~~--------~~~~~T~h~~~~~-----~~~~~~~~~~~~~----------~~---~~~~~~~~~iiiDE~~~~~- 141 (459)
T 3upu_A 89 ILSKLS--------GKEASTIHSILKI-----NPVTYEENVLFEQ----------KE---VPDLAKCRVLICDEVSMYD- 141 (459)
T ss_dssp HHHHHH--------SSCEEEHHHHHTE-----EEEECSSCEEEEE----------CS---CCCCSSCSEEEESCGGGCC-
T ss_pred HHHhhh--------ccchhhHHHHhcc-----Ccccccccchhcc----------cc---cccccCCCEEEEECchhCC-
Confidence 765443 1112111100000 0000 00000000 00 1335678999999999764
Q ss_pred cChHHHHHHHHHHCCCCCcEEEEe
Q 006737 549 LGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 549 ~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
...+..++..++...+++++.
T Consensus 142 ---~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 142 ---RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp ---HHHHHHHHHHSCTTCEEEEEE
T ss_pred ---HHHHHHHHHhccCCCEEEEEC
Confidence 335666677777666666654
No 86
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.67 E-value=9.6e-05 Score=84.42 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=52.2
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grD-vLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
.+++-|.+|+..++..++ .||+||.|||||.+- ..++..+.... .++|+++||...+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti-~~~I~~l~~~~----------~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTV-VEIILQAVKQG----------LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHH-HHHHHHHHHTT----------CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHH-HHHHHHHHhCC----------CeEEEEcCchHHHHHHHHHHHhc
Confidence 578999999999988775 589999999999863 34444444432 35999999999999988877543
No 87
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00027 Score=82.88 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=55.0
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
+..+++.|..|+..++.+.-++|.||.|||||.+. ..++..+.... +.++|+++||...+.++.+.+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~~---------~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKIH---------KDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHHH---------CCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhCC---------CCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45789999999999988777899999999999763 33444444321 125999999999999998888764
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.63 E-value=0.00023 Score=83.38 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=54.4
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
...+++.|..|+..++.+.-++|.||+|||||.+. ..++..+.... +.++|+++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~~---------~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQG---------NGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTTC---------SSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHcC---------CCcEEEEcCcHHHHHHHHHHHHHh
Confidence 45789999999999998888899999999999863 34444444321 135999999999999988777543
No 89
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.99 E-value=0.0041 Score=70.25 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=53.6
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
..+++-|.+++.. ....++|.|+.|||||.+.+ .-+.++..... .++-++|+|++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~-~ri~~l~~~~~------~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLV-HRIAWLMSVEN------CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHH-HHHHHHHHTSC------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHH-HHHHHHHHhCC------CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4789999999973 35689999999999998643 33334443321 112359999999999999999998886
Q ss_pred h
Q 006737 480 K 480 (633)
Q Consensus 480 ~ 480 (633)
.
T Consensus 79 ~ 79 (647)
T 3lfu_A 79 G 79 (647)
T ss_dssp C
T ss_pred c
Confidence 4
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.85 E-value=0.0053 Score=57.68 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.|+.+++.||+|+|||..
T Consensus 37 ~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp GCCEEEECCSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999974
No 91
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.64 E-value=0.0085 Score=64.31 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.++|+|...+..+...+-+++..+-+.|||.+...-++..+... ++..+++++||++.|..+++.+..+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~---------~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS---------SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 68999999998775556789999999999987665555433321 134699999999999999988888876
Q ss_pred cCC
Q 006737 481 NHD 483 (633)
Q Consensus 481 ~~~ 483 (633)
..+
T Consensus 234 ~~P 236 (385)
T 2o0j_A 234 LLP 236 (385)
T ss_dssp HSC
T ss_pred hCh
Confidence 544
No 92
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.49 E-value=0.025 Score=63.88 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=57.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.++++|...+..+...+-+++..+-|+|||.+...-++-.+.... +..++++.|+++.|..++..+..++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~---------~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK---------DKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS---------SCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC---------CCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 689999999987755677999999999999876554444443221 23699999999999999998888876
Q ss_pred cCC
Q 006737 481 NHD 483 (633)
Q Consensus 481 ~~~ 483 (633)
..+
T Consensus 234 ~~p 236 (592)
T 3cpe_A 234 LLP 236 (592)
T ss_dssp TSC
T ss_pred hCh
Confidence 554
No 93
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.35 E-value=0.0065 Score=69.66 Aligned_cols=68 Identities=32% Similarity=0.421 Sum_probs=51.3
Q ss_pred CCCCCcHHHHHHHHHHhC----CC-cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHH
Q 006737 398 GYIQMTRVQEATLSACLE----GK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472 (633)
Q Consensus 398 g~~~pt~iQ~~aIp~il~----gr-DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~ 472 (633)
+| .|++.|..+|..+.. |. ..++.+.||||||+++.- ++..+ .. .+|||+|+..+|.|++
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~---~~----------~~lvv~~~~~~A~ql~ 70 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL---GR----------PALVLAPNKILAAQLA 70 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH---TC----------CEEEEESSHHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh---CC----------CEEEEecCHHHHHHHH
Confidence 56 899999888876553 32 577889999999986432 22222 11 2899999999999999
Q ss_pred HHHHHHHh
Q 006737 473 AEAIALLK 480 (633)
Q Consensus 473 ~~l~~l~~ 480 (633)
..+..++.
T Consensus 71 ~el~~~~~ 78 (664)
T 1c4o_A 71 AEFRELFP 78 (664)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHCC
Confidence 99999964
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.00 E-value=0.0051 Score=56.86 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=26.8
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCC-CCcEEEEeccCChh
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPR-RRQSLLFSATMPKE 578 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk-~~Q~IlfSATl~~e 578 (633)
+.++|||||++.+.... ...+..+++.+.. ...++++++..++.
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 46789999999866543 5556666654432 34435556665443
No 95
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.43 E-value=0.012 Score=64.13 Aligned_cols=43 Identities=33% Similarity=0.388 Sum_probs=30.3
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
+=.++.|+.|+|||.... .+.... ..+|++||++++..+.+.+
T Consensus 162 ~v~~I~G~aGsGKTt~I~-----~~~~~~-----------~~lVlTpT~~aa~~l~~kl 204 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL-----SRVNFE-----------EDLILVPGRQAAEMIRRRA 204 (446)
T ss_dssp EEEEEEECTTSCHHHHHH-----HHCCTT-----------TCEEEESCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHH-----HHhccC-----------CeEEEeCCHHHHHHHHHHh
Confidence 346789999999998421 121110 2689999999998877655
No 96
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.26 E-value=0.061 Score=55.29 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=24.8
Q ss_pred eeEEEEecccccCCc-ChHHHHHHHHHHC-CCCCcEEEEeccCChh
Q 006737 535 LKMLVLDEADHLLDL-GFRKDVENIVDCL-PRRRQSLLFSATMPKE 578 (633)
Q Consensus 535 l~~LVIDEAD~Lld~-gf~~~l~~Il~~l-pk~~Q~IlfSATl~~e 578 (633)
..+|+|||+|.+... .....+..+++.+ ....+ ++++++.+..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~-iii~~~~~~~ 143 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQ-IILASDRHPQ 143 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCE-EEEEESSCGG
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCe-EEEEecCChH
Confidence 568999999998752 2334444555433 23344 5555565443
No 97
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.21 E-value=0.023 Score=64.80 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=56.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.+++-|.+++... +..++|.|+.|||||.+.+--+...+..... ++-++|+|+.|+..|.++.+.+..+..
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-------~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-------CGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999999763 6689999999999998644333333333221 123599999999999999999988754
Q ss_pred cC--CCceEEEE
Q 006737 481 NH--DGIGVLTL 490 (633)
Q Consensus 481 ~~--~~i~v~~l 490 (633)
.. .++.|..+
T Consensus 73 ~~~~~~~~v~Tf 84 (673)
T 1uaa_A 73 RKEARGLMISTF 84 (673)
T ss_dssp TTTTTTSEEEEH
T ss_pred cccccCCEEEeH
Confidence 32 23555544
No 98
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.03 E-value=0.011 Score=58.72 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=58.7
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCc
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~ 494 (633)
.|.=++++|++|+|||.+.+ -++..+.... .+++|+.|...-- . ...+.... | .
T Consensus 11 ~G~i~litG~mGsGKTT~ll-~~~~r~~~~g----------~kVli~~~~~d~r---~--~~~i~srl---------G-~ 64 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELI-RRLHRLEYAD----------VKYLVFKPKIDTR---S--IRNIQSRT---------G-T 64 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHH-HHHHHHHHTT----------CCEEEEEECCCGG---G--CSSCCCCC---------C-C
T ss_pred CcEEEEEECCCCCcHHHHHH-HHHHHHHhcC----------CEEEEEEeccCch---H--HHHHHHhc---------C-C
Confidence 35567889999999998643 3333333322 2488887754210 0 00001100 1 0
Q ss_pred cchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 495 ~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
.. ..+-+.+...++..+... ..-...++||||||+.+... ....+..+.. ...++|++.
T Consensus 65 ~~-----------~~~~~~~~~~i~~~i~~~----~~~~~~dvViIDEaQ~l~~~-~ve~l~~L~~---~gi~Vil~G 123 (223)
T 2b8t_A 65 SL-----------PSVEVESAPEILNYIMSN----SFNDETKVIGIDEVQFFDDR-ICEVANILAE---NGFVVIISG 123 (223)
T ss_dssp SS-----------CCEEESSTHHHHHHHHST----TSCTTCCEEEECSGGGSCTH-HHHHHHHHHH---TTCEEEEEC
T ss_pred Cc-----------cccccCCHHHHHHHHHHH----hhCCCCCEEEEecCccCcHH-HHHHHHHHHh---CCCeEEEEe
Confidence 00 133456666676666543 11235789999999976432 3333433333 255555544
No 99
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.13 Score=53.61 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=18.8
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHH
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~ 442 (633)
+.++++.||+|+|||++.- .++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4589999999999998643 2444443
No 100
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.88 E-value=0.083 Score=50.37 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=24.9
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccH
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTR 465 (633)
|+=.+++|+.|+|||...+ -++....... .+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll-~~~~~~~~~g----------~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL-SFVEIYKLGK----------KKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH-HHHHHHHHTT----------CEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHH-HHHHHHHHCC----------CeEEEEeecc
Confidence 5567899999999998643 2333332221 2588888874
No 101
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.74 E-value=0.033 Score=53.65 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.++.++++||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467899999999999974
No 102
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.67 E-value=0.053 Score=62.62 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=57.5
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
..+++-|.+++.. ....++|.|..|||||.+..- -+.+++.... ..+-++|+|+.|+..|.++.+.+..+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~-ri~~ll~~~~------~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTH-RIAYLMAEKH------VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHH-HHHHHHHTTC------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHH-HHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4789999999976 356899999999999986433 3333433211 112358999999999999999988875
Q ss_pred hcC-CCceEEEE
Q 006737 480 KNH-DGIGVLTL 490 (633)
Q Consensus 480 ~~~-~~i~v~~l 490 (633)
... .++.+..+
T Consensus 81 ~~~~~~~~v~Tf 92 (724)
T 1pjr_A 81 GGAAEDVWISTF 92 (724)
T ss_dssp GGGGTTSEEEEH
T ss_pred cccccCcEEeeH
Confidence 422 24555544
No 103
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.44 E-value=0.094 Score=50.61 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=25.4
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccH
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTR 465 (633)
|+=.+++++.|+|||.+.+ -++....... .+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~~g----------~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKIAK----------QKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHHTT----------CCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHHCC----------CEEEEEEecc
Confidence 5557889999999997643 3343333222 3589998873
No 104
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.38 E-value=0.15 Score=51.60 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
+.+++++||+|+|||.+.
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 347999999999999753
No 105
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.34 E-value=0.16 Score=55.17 Aligned_cols=41 Identities=15% Similarity=0.359 Sum_probs=25.3
Q ss_pred CeeEEEEecccccCCc-ChHHHHHHHHHHC-CCCCcEEEEeccC
Q 006737 534 GLKMLVLDEADHLLDL-GFRKDVENIVDCL-PRRRQSLLFSATM 575 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~-gf~~~l~~Il~~l-pk~~Q~IlfSATl 575 (633)
...+|||||+|.+... .....+..+++.+ ....++|+ +++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIi-tt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVI-CSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEE-EESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEE-EECC
Confidence 4568999999999863 2444555555543 33455555 4443
No 106
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.31 E-value=0.13 Score=51.31 Aligned_cols=45 Identities=27% Similarity=0.451 Sum_probs=26.5
Q ss_pred CeeEEEEecccccCCc-----ChHHH-HHHHHHHCC----CCCcEEEEeccCChh
Q 006737 534 GLKMLVLDEADHLLDL-----GFRKD-VENIVDCLP----RRRQSLLFSATMPKE 578 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~-----gf~~~-l~~Il~~lp----k~~Q~IlfSATl~~e 578 (633)
...+|||||+|.|+.. .+... +..+...+. ...+++++.+|-.++
T Consensus 124 ~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 4678999999998531 12222 233333333 345677777777664
No 107
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.17 E-value=0.053 Score=54.38 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=31.1
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHH--HhCCCcEEEEccCCCCchhh
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSA--CLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~--il~grDvLv~ApTGSGKTla 432 (633)
.+|+++.-.+..++.|...- ..+ -.....+.. +...+.++++||+|+|||..
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVV-ELP-LKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHT-HHH-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHH-HHH-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 45888877777777776531 000 000111111 23457899999999999974
No 108
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.02 E-value=0.13 Score=58.75 Aligned_cols=66 Identities=26% Similarity=0.333 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHh----CCC-cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACL----EGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475 (633)
Q Consensus 401 ~pt~iQ~~aIp~il----~gr-DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l 475 (633)
.|+..|..+|..+. .|. ..++.+.||||||++..- ++..+ .. .+|||+|+..+|.|++..+
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~---~~----------~~lvv~~~~~~A~~l~~el 77 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV---NK----------PTLVIAHNKTLAGQLYSEF 77 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH---CC----------CEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh---CC----------CEEEEECCHHHHHHHHHHH
Confidence 67788887776544 343 477889999999985332 22221 11 2899999999999999999
Q ss_pred HHHHh
Q 006737 476 IALLK 480 (633)
Q Consensus 476 ~~l~~ 480 (633)
..++.
T Consensus 78 ~~~~~ 82 (661)
T 2d7d_A 78 KEFFP 82 (661)
T ss_dssp HHHCT
T ss_pred HHHcC
Confidence 99964
No 109
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.91 E-value=0.07 Score=65.37 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 006737 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479 (633)
Q Consensus 400 ~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~ 479 (633)
..+|+-|.++|..- +++++|.|..|||||.+.+-=++..+..... ....-++|+|++|+..|.++.+.+...+
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-----~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN-----PIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-----CCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-----CCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 36899999999864 7899999999999998654444444433210 1122359999999999999998887754
No 110
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.80 E-value=0.72 Score=43.04 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=25.8
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
..-.+|||||+|.+... ....+..++...+....+|+.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 34568999999998643 4556666677665555555544
No 111
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.49 E-value=0.28 Score=50.08 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=26.1
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
...+|||||+|.+........+..+++..+...++|+.+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 577899999999862234555666666655566666633
No 112
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.41 E-value=0.63 Score=47.81 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=30.7
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----CCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACL-----EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il-----~grDvLv~ApTGSGKTla 432 (633)
..+|+++.-...+++.|...=. .+ ...|.+. ..+.++++||+|+|||+.
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 3468888777777777765310 00 0111111 135799999999999974
No 113
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.21 E-value=0.094 Score=59.98 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=73.5
Q ss_pred CCcHHHHHHHHHHhC--CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 401 QMTRVQEATLSACLE--GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~--grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
.+|.-|.+++..++. ..-.++.|+-|.|||.+.-+.+ ..+ . . .++|.+|+.+-+..+.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~-~---~---------~~~vtAP~~~a~~~l~~~---- 236 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRI-A---G---------RAIVTAPAKASTDVLAQF---- 236 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHS-S---S---------CEEEECSSCCSCHHHHHH----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHH-H---h---------CcEEECCCHHHHHHHHHH----
Confidence 678999999988876 3357899999999996543322 221 1 1 268999999877654322
Q ss_pred HhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHH
Q 006737 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558 (633)
Q Consensus 479 ~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~I 558 (633)
... .|-+..|..+.. .+...++||||||=.+- .+.+..+
T Consensus 237 ~~~---------------------------~i~~~~Pd~~~~----------~~~~~dlliVDEAAaIp----~pll~~l 275 (671)
T 2zpa_A 237 AGE---------------------------KFRFIAPDALLA----------SDEQADWLVVDEAAAIP----APLLHQL 275 (671)
T ss_dssp HGG---------------------------GCCBCCHHHHHH----------SCCCCSEEEEETGGGSC----HHHHHHH
T ss_pred hhC---------------------------CeEEeCchhhhh----------CcccCCEEEEEchhcCC----HHHHHHH
Confidence 210 133445654321 12357899999997765 4466666
Q ss_pred HHHCCCCCcEEEEeccCChh
Q 006737 559 VDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 559 l~~lpk~~Q~IlfSATl~~e 578 (633)
+... ..|+||.|+.--
T Consensus 276 l~~~----~~v~~~tTv~GY 291 (671)
T 2zpa_A 276 VSRF----PRTLLTTTVQGY 291 (671)
T ss_dssp HTTS----SEEEEEEEBSST
T ss_pred HhhC----CeEEEEecCCcC
Confidence 6533 368888887543
No 114
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.21 E-value=0.17 Score=49.90 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=24.1
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHH
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE 466 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTRe 466 (633)
|+=.+++++-|+|||.+.+- .+...... +.+++|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~-~a~r~~~~----------g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIR-RVRRTQFA----------KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHH-HHHHHHHT----------TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHHHC----------CCEEEEEEeccC
Confidence 44456788889999976433 33333222 235899988764
No 115
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.19 E-value=0.24 Score=51.52 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
.+.++++||+|+|||..
T Consensus 45 ~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 35799999999999975
No 116
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.12 E-value=0.44 Score=49.30 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=30.1
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----CCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACL-----EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il-----~grDvLv~ApTGSGKTla 432 (633)
..+|++++-.+.+.+.|.+.-. .|+ ..|.++ ..+.++++||+|+|||+.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~---~~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPI---KFPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHH---HCGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHH---hCHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 3568888777777777654200 000 011222 236799999999999974
No 117
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.04 E-value=0.19 Score=48.91 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=25.5
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEccc
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPT 464 (633)
|+=.++.++.|+|||.. +|-.+....... .+++|+.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~~----------~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIAQ----------YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHTT----------CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHcC----------CeEEEEccc
Confidence 56678999999999953 444444433322 358898887
No 118
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.94 E-value=1.6 Score=39.47 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
...++++|++|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 35799999999999975
No 119
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.90 E-value=0.26 Score=47.68 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.1
Q ss_pred hCCCcEEEEccCCCCchhh
Q 006737 414 LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTla 432 (633)
..|.-+++.|++|+|||..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl 39 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIF 39 (247)
T ss_dssp ETTCEEEEEECTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3567889999999999975
No 120
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.85 E-value=0.29 Score=50.57 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.+..++++||+|+|||..
T Consensus 43 ~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCCEEECBCTTSSHHHH
T ss_pred CCCcEEEECCCCCCHHHH
Confidence 356899999999999975
No 121
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.85 E-value=0.2 Score=52.01 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=13.8
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
.++++||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999984
No 122
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.67 E-value=0.41 Score=45.17 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCchhh
Q 006737 417 KDAVVKAKTGTGKSIA 432 (633)
Q Consensus 417 rDvLv~ApTGSGKTla 432 (633)
+.++++||+|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999984
No 123
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.48 E-value=0.33 Score=49.56 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=30.5
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHH-HHHHH--HhCCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQE-ATLSA--CLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~-~aIp~--il~grDvLv~ApTGSGKTla 432 (633)
..+|++++-...+.+.|...- . .++.. ..+.. +..++.++++||+|+|||+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v-~--~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELV-Q--YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH-H--HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 356888876676666665430 0 00000 00111 23467899999999999984
No 124
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.34 E-value=1.9 Score=40.45 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=21.9
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
.-.+|||||+|.+.. .....+..++...+....+|+.|
T Consensus 126 ~~~vlviDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR-HSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSEEEEEETGGGSCH-HHHHHHHHHHHSCCTTEEEEEEE
T ss_pred CceEEEEECcccccH-HHHHHHHHHHhcCCCceEEEEEe
Confidence 346899999999753 23444455555444444444433
No 125
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=92.29 E-value=0.64 Score=42.70 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=53.8
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++++..+..+++.+... ++.+..++|+....... ..+..+..+|||+|. .+.. .+++.
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----Gld~~ 102 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAAR----GIDIE 102 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTT----TCCCS
T ss_pred cEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc----CCchh
Confidence 5999999999999998887765 67889999987655433 345567789999993 2233 36778
Q ss_pred CeeEEEEec
Q 006737 534 GLKMLVLDE 542 (633)
Q Consensus 534 ~l~~LVIDE 542 (633)
.+.+||.-.
T Consensus 103 ~~~~Vi~~~ 111 (163)
T 2hjv_A 103 NISLVINYD 111 (163)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEeC
Confidence 888888643
No 126
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.16 E-value=0.68 Score=47.91 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=21.6
Q ss_pred cHHHHHHHHHH----hCCC---cEEEEccCCCCchhhh
Q 006737 403 TRVQEATLSAC----LEGK---DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 403 t~iQ~~aIp~i----l~gr---DvLv~ApTGSGKTlay 433 (633)
.|+|..++..+ .+|+ -+++.||.|+|||.+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 46666665443 3444 4899999999999754
No 127
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.98 E-value=0.58 Score=50.82 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=33.9
Q ss_pred CCeeEEEEecccccC---CcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLL---DLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Ll---d~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
...++||||.+-++. +..+...+..++..+.+..-+++++|+...+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK 226 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH
Confidence 467899999998653 3446777778877777666678888887654
No 128
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.90 E-value=0.37 Score=49.67 Aligned_cols=41 Identities=10% Similarity=0.239 Sum_probs=28.8
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEecc
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
...++|||||+|. ++......+..+++..+....+|+.|-.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 3567999999999 5555667777888877666555555443
No 129
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=91.84 E-value=0.5 Score=43.90 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=54.1
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
.++||.++++..|..++..+... ++.+..++|+....... ..+..+..+|||+|. .+.. .+++
T Consensus 35 ~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~----Gid~ 100 (175)
T 2rb4_A 35 GQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCAR----GIDV 100 (175)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCT----TTCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhc----CCCc
Confidence 36999999999999988777653 67899999987755433 345567789999993 2222 3678
Q ss_pred CCeeEEEEec
Q 006737 533 MGLKMLVLDE 542 (633)
Q Consensus 533 s~l~~LVIDE 542 (633)
..+.+||.-.
T Consensus 101 ~~~~~Vi~~d 110 (175)
T 2rb4_A 101 KQVTIVVNFD 110 (175)
T ss_dssp TTEEEEEESS
T ss_pred ccCCEEEEeC
Confidence 8899888533
No 130
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.78 E-value=0.48 Score=43.23 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
...++++||+|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 45899999999999974
No 131
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.63 E-value=1.2 Score=42.37 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=54.3
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++++..+..++..+... ++.+..++|+....... ..+..+.++|||+| +.+..+ +++.
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~G----ldi~ 121 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASKG----LDFP 121 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHTT----CCCC
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----CchhcC----CCcc
Confidence 5999999999999998888765 67889999987755433 34455678999999 344444 6778
Q ss_pred CeeEEEEe
Q 006737 534 GLKMLVLD 541 (633)
Q Consensus 534 ~l~~LVID 541 (633)
.+.+||.=
T Consensus 122 ~v~~VI~~ 129 (191)
T 2p6n_A 122 AIQHVINY 129 (191)
T ss_dssp CCSEEEES
T ss_pred cCCEEEEe
Confidence 88888873
No 132
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.57 E-value=0.26 Score=50.78 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
++++++.||+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 579999999999999743
No 133
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.55 E-value=0.41 Score=50.20 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
.+.++++||+|+|||+..
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999843
No 134
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.24 E-value=2.1 Score=41.64 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=27.3
Q ss_pred cCccccCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 379 KRFDECGISPLTIKALTAAG--YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g--~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
.+|+++.-.+.+.+.|.+.- +..+..+... .+...+.++++||+|+|||..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHH
Confidence 35777765566666665420 1111111110 012346799999999999974
No 135
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.22 E-value=0.94 Score=43.70 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=53.4
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++++.-+..++..+... ++.+..++|+....... ..+..+..+|||||. .+.. .+++.
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~----Gidi~ 98 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAAR----GLDIP 98 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTC----SSSCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhc----CCCCc
Confidence 5999999999999998888775 67889999998765543 345567789999993 2333 36778
Q ss_pred CeeEEEE
Q 006737 534 GLKMLVL 540 (633)
Q Consensus 534 ~l~~LVI 540 (633)
.+.+||.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 8888774
No 136
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.18 E-value=0.42 Score=45.58 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.|.-+++.+++|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 467789999999999974
No 137
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.01 E-value=1.5 Score=45.00 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
+..+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56899999999999984
No 138
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.94 E-value=0.4 Score=52.03 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=19.4
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHH
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~ 442 (633)
..|.-+++.|++|+|||.. ++-+...+.
T Consensus 201 ~~G~liiI~G~pG~GKTtl-~l~ia~~~~ 228 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAF-ALNIAQNVA 228 (454)
T ss_dssp CTTCEEEEECCTTSCHHHH-HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 3567789999999999974 333444343
No 139
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.93 E-value=0.57 Score=50.45 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=31.3
Q ss_pred ccCccccCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAAG---YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g---~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
..+|++.+=-+...+.|.+.= +..|.-++..- +..-+-+|+.||+|+|||+.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHH
Confidence 456999876666666666530 11111111111 11236899999999999984
No 140
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.87 E-value=1 Score=41.33 Aligned_cols=72 Identities=13% Similarity=0.254 Sum_probs=53.3
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++++..+..++..+... ++.+..++|+....... ..+..+..+|||+|. .+.. .+++.
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----G~d~~ 97 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLAR----GIDVQ 97 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTT----TCCCC
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhc----CCCcc
Confidence 5999999999999988877664 67888999987755433 345567789999993 2233 36777
Q ss_pred CeeEEEEec
Q 006737 534 GLKMLVLDE 542 (633)
Q Consensus 534 ~l~~LVIDE 542 (633)
.+.+||.-.
T Consensus 98 ~~~~Vi~~~ 106 (165)
T 1fuk_A 98 QVSLVINYD 106 (165)
T ss_dssp SCSEEEESS
T ss_pred cCCEEEEeC
Confidence 888887743
No 141
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.46 E-value=1.6 Score=43.94 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=25.2
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEE
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~Ilf 571 (633)
..-.+|||||+|.+... ....+..+++..+....+|+.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~ 146 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILS 146 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEE
Confidence 35678999999998643 345566666666555555554
No 142
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.29 E-value=0.43 Score=51.59 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=19.2
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHH
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~ 442 (633)
..|.-+++.|++|+|||.. ++-+...+.
T Consensus 198 ~~G~l~ii~G~pg~GKT~l-al~ia~~~a 225 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAF-ALTIAQNAA 225 (444)
T ss_dssp CTTCEEEEEECTTSCHHHH-HHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 3456789999999999964 444444443
No 143
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.16 E-value=0.87 Score=48.08 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=28.2
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHH---------hCCCcEEEEccCCCCchhh
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSAC---------LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~i---------l~grDvLv~ApTGSGKTla 432 (633)
.+|+++.-...+++.|...- .++.. ...+.+|++||+|+|||++
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIV----------ILPSLRPELFTGLRAPARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHT----------HHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHH
T ss_pred CChHHhCCHHHHHHHHHHHH----------HHhccCHHHhcccCCCCceEEEECCCCCCHHHH
Confidence 45777765666666665421 11111 1247899999999999974
No 144
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.11 E-value=0.68 Score=50.99 Aligned_cols=43 Identities=21% Similarity=0.384 Sum_probs=29.7
Q ss_pred eEEEEecccccCCc-----C-----hHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 536 KMLVLDEADHLLDL-----G-----FRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 536 ~~LVIDEAD~Lld~-----g-----f~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
.+|+|||+|.|... + ....+..+++.+.....++++.||-.+.
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence 57999999988742 1 2344555666666667788888887664
No 145
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.07 E-value=0.72 Score=50.52 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=32.1
Q ss_pred ccCccccCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAAG---YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g---~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
..+|++.+--+.+.+.|.+.= +..|.-++..- +.--+-+|++||+|+|||+.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 457999987777777776531 11111111110 12346899999999999974
No 146
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.93 E-value=0.65 Score=47.53 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=25.5
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
...+|||||+|.+... ....+..+++..+....+|+.+
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 4578999999998643 3455666677666555555543
No 147
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.87 E-value=0.67 Score=46.23 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=25.1
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTR 465 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTR 465 (633)
.|+=.+++|+-|+|||.+.+- .+...... +.+++|+.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~-~~~r~~~~----------g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMR-RVRRFQIA----------QYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHH-HHHHHHTT----------TCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHH-HHHHHHHC----------CCeEEEEeecC
Confidence 356667888889999975333 33222222 23588888875
No 148
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.48 E-value=0.8 Score=45.96 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=29.0
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHH-----hCCCcEEEEccCCCCchhh
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSAC-----LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~i-----l~grDvLv~ApTGSGKTla 432 (633)
.+|+++.-...+.+.|...-. .+. ..|.+ ...+.+++.||+|+|||+.
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVI---LPS---VRPELFTGLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTH---HHH---HCGGGSCGGGCCCSEEEEESSSSSCHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHH---hhh---hCHHHHhcCCCCCCeEEEECcCCCCHHHH
Confidence 457887666777766654310 000 00111 1357899999999999974
No 149
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.46 E-value=2 Score=47.26 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=28.0
Q ss_pred CeeEEEEecccccCCc--ChHHHHHHHHHHCCCCCcEEEEeccCC
Q 006737 534 GLKMLVLDEADHLLDL--GFRKDVENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~--gf~~~l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
.-.+|||||+|.|... +....+..++... ...+|+.+++..
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 4568999999999753 3445666666553 456788777654
No 150
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.38 E-value=0.29 Score=53.27 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=33.1
Q ss_pred ccCccccCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~---g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
..+|++.+--+.+.+.|.+. -+..|.-++..-+ -.-+-+|++||+|+|||+.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 45699998878777777653 1122222222211 1246899999999999974
No 151
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=89.16 E-value=1.2 Score=41.46 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=53.3
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++++..+..++..+... ++.+..++|+....... ..+..+...|||+|.- +.. .+++.
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~----Gldi~ 98 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FGR----GMDIE 98 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CST----TCCGG
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hhc----Ccchh
Confidence 5999999999999988887764 67888999987655433 3455677899999942 222 36677
Q ss_pred CeeEEEEec
Q 006737 534 GLKMLVLDE 542 (633)
Q Consensus 534 ~l~~LVIDE 542 (633)
.+.+||.-+
T Consensus 99 ~~~~Vi~~d 107 (172)
T 1t5i_A 99 RVNIAFNYD 107 (172)
T ss_dssp GCSEEEESS
T ss_pred hCCEEEEEC
Confidence 888888633
No 152
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.08 E-value=0.7 Score=47.34 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCchhh
Q 006737 417 KDAVVKAKTGTGKSIA 432 (633)
Q Consensus 417 rDvLv~ApTGSGKTla 432 (633)
..++++||+|+|||+.
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5899999999999974
No 153
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.91 E-value=0.34 Score=47.86 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=51.1
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCc
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~ 494 (633)
.|.=.+++++-|+|||... +-.+....... .+++|+.|...--.- ...+.... ++..
T Consensus 27 ~G~I~vitG~M~sGKTT~L-lr~~~r~~~~g----------~kvli~kp~~D~R~~----~~~I~Sr~-G~~~------- 83 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEEL-IRRLRRGIYAK----------QKVVVFKPAIDDRYH----KEKVVSHN-GNAI------- 83 (219)
T ss_dssp CCEEEEEEECTTSCHHHHH-HHHHHHHHHTT----------CCEEEEEEC---------------CBT-TBCC-------
T ss_pred CceEEEEECCCCCCHHHHH-HHHHHHHHHcC----------CceEEEEeccCCcch----hhhHHHhc-CCce-------
Confidence 3556788999999999753 33344333322 358999886532110 01111111 1111
Q ss_pred cchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcChHHHHHHHH
Q 006737 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559 (633)
Q Consensus 495 ~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il 559 (633)
.-+.|..+.-|..++ ...+.+|+||||+.+.+ ....++..+.
T Consensus 84 -------------~a~~v~~~~di~~~i---------~~~~dvV~IDEaQFf~~-~~v~~l~~la 125 (219)
T 3e2i_A 84 -------------EAINISKASEIMTHD---------LTNVDVIGIDEVQFFDD-EIVSIVEKLS 125 (219)
T ss_dssp -------------EEEEESSGGGGGGSC---------CTTCSEEEECCGGGSCT-HHHHHHHHHH
T ss_pred -------------eeEEeCCHHHHHHHH---------hcCCCEEEEechhcCCH-HHHHHHHHHH
Confidence 124444444443222 13678999999998764 3556666665
No 154
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.82 E-value=0.63 Score=50.61 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=30.2
Q ss_pred ccCccccCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~---g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
..+|++.+--+...+.|.+. -+..|.-++..- +.--+-+|++||+|+|||+.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHH
Confidence 45689987666666666542 011111111110 11236899999999999984
No 155
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.78 E-value=2.6 Score=43.24 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=24.0
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEecc
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
..-.+|||||+|.+... ....+..+++..+....+ +++++
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~-Il~~~ 157 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKF-LLATT 157 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEE-EEEES
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEE-EEEeC
Confidence 45678999999998643 344555555554444433 44444
No 156
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.28 E-value=0.55 Score=45.43 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=29.3
Q ss_pred CCeeEEEEecccccCC-----cChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 533 MGLKMLVLDEADHLLD-----LGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld-----~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
.+.++|||||.-.+++ ......+..++..+...-.+|+++.-...+.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 4678999999988875 3455557777766643334666665554443
No 157
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.88 E-value=2.1 Score=43.95 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=30.6
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l 478 (633)
..|.-+++.|++|+|||.. ++-+...+.... -.++|++-- +-..|+...+...
T Consensus 66 ~~G~l~li~G~pG~GKTtl-~l~ia~~~a~~g----------~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAF-ALKQAKNMSDND----------DVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHH-HHHHHHHHHTTT----------CEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH-HHHHHHHHHHcC----------CeEEEEECC-CCHHHHHHHHHHH
Confidence 4567789999999999963 333333333221 247776533 4445555555443
No 158
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.87 E-value=2.7 Score=46.09 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=58.1
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
.++||.++|+.-|..++..+...+. .++.+..++|+....... ..+..+..+|||||. .+.. .+++
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~----GiDi 408 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR----GMDF 408 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS----SCCC
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhc----CCCc
Confidence 3699999999999999999888754 267888999987755433 445567789999994 3333 3778
Q ss_pred CCeeEEEEecc
Q 006737 533 MGLKMLVLDEA 543 (633)
Q Consensus 533 s~l~~LVIDEA 543 (633)
.++.+||.-..
T Consensus 409 p~v~~VI~~~~ 419 (563)
T 3i5x_A 409 PNVHEVLQIGV 419 (563)
T ss_dssp TTCCEEEEESC
T ss_pred ccCCEEEEECC
Confidence 88998886554
No 159
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.72 E-value=1.3 Score=47.90 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=29.6
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHH-HH-HHHhCCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEA-TL-SACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~-aI-p~il~grDvLv~ApTGSGKTla 432 (633)
..+|+++.-...+.+.|...-. .|++.. .+ ......+.+|++||+|+|||+.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 3568888766677666654210 000000 00 0012346899999999999974
No 160
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.65 E-value=0.87 Score=43.00 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=45.1
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++++.-+..++..+... ++.+..++|+...... ...+..+...|||+|. .+..+ +++.
T Consensus 48 k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----ldi~ 113 (185)
T 2jgn_A 48 LTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LDIS 113 (185)
T ss_dssp CEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC---------------CCC
T ss_pred eEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhcC----CCcc
Confidence 5999999999999988877664 6788899998764432 3455567789999993 22222 6677
Q ss_pred CeeEEEE
Q 006737 534 GLKMLVL 540 (633)
Q Consensus 534 ~l~~LVI 540 (633)
.+.+||.
T Consensus 114 ~~~~VI~ 120 (185)
T 2jgn_A 114 NVKHVIN 120 (185)
T ss_dssp SBSEEEE
T ss_pred cCCEEEE
Confidence 8888876
No 161
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.60 E-value=0.96 Score=49.09 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=31.5
Q ss_pred cccCccccCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 377 SQKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~---g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
+..+|++.+=-+.+.+.|.+. -+..|.-++..-+ ---+-+|+.||+|+|||+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHH
Confidence 346799997556666666542 1122222222111 1236899999999999983
No 162
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.47 E-value=3.5 Score=41.06 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=18.6
Q ss_pred HHhCCCcEEEEccCCCCchhhhH
Q 006737 412 ACLEGKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 412 ~il~grDvLv~ApTGSGKTlayl 434 (633)
-+..|.-+++.+++|+|||...+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHH
Confidence 35578889999999999997543
No 163
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=87.46 E-value=1.7 Score=45.24 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.2
Q ss_pred CCcEEE--EccCCCCchhh
Q 006737 416 GKDAVV--KAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv--~ApTGSGKTla 432 (633)
+..+++ +|++|+|||..
T Consensus 50 ~~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp CEEEEEECTTCCSSSHHHH
T ss_pred CCEEEEeCcCcCCCCHHHH
Confidence 346888 99999999974
No 164
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.33 E-value=0.72 Score=50.17 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
..++++||+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 37999999999999843
No 165
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.05 E-value=2.2 Score=46.47 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=14.2
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
.-+++++++|+|||...
T Consensus 101 ~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTV 117 (443)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 46789999999999853
No 166
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.03 E-value=0.94 Score=49.10 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=29.8
Q ss_pred ccCccccCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAA---GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~---g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
..+|++.+=-+.+.+.|.+. -+..|.-++..- +.--+-+|++||+|+|||+.
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHH
Confidence 45689987666666666542 011111111110 11235799999999999984
No 167
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=86.97 E-value=2 Score=44.74 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=54.6
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
.++||.+++++.+..+++.+... ++.+..++|+....... ..+..+..+|||||. .+..+ +++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----idi 342 (417)
T 2i4i_A 277 SLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LDI 342 (417)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTT----SCC
T ss_pred CeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcC----CCc
Confidence 46999999999999988887764 67889999988755433 344556789999994 45544 778
Q ss_pred CCeeEEEE
Q 006737 533 MGLKMLVL 540 (633)
Q Consensus 533 s~l~~LVI 540 (633)
..+++||.
T Consensus 343 p~v~~Vi~ 350 (417)
T 2i4i_A 343 SNVKHVIN 350 (417)
T ss_dssp CCEEEEEE
T ss_pred ccCCEEEE
Confidence 88998885
No 168
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.83 E-value=1.6 Score=41.87 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCCchhhhH
Q 006737 415 EGKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlayl 434 (633)
.|.-+++.+|+|+|||....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 46788999999999997543
No 169
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.65 E-value=2.3 Score=43.78 Aligned_cols=39 Identities=18% Similarity=0.463 Sum_probs=27.2
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
...+++||||+|.|... ....+..+++..+....+|+.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34688999999998643 4556777777776666655543
No 170
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.28 E-value=0.72 Score=58.80 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=19.9
Q ss_pred HHHHhC------CCcEEEEccCCCCchhhhH
Q 006737 410 LSACLE------GKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 410 Ip~il~------grDvLv~ApTGSGKTlayl 434 (633)
+..++. ++.+++++|+|+|||...+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ 1445 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTL 1445 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHH
Confidence 555555 6899999999999998543
No 171
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=85.72 E-value=4.1 Score=45.13 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=58.6
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
.++||.++|+..|..++..+...+. .++.+..++|+...... ...+..+..+|||||. .+.. .+++
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~----GiDi 357 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR----GMDF 357 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS----SCCC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc----CCCc
Confidence 3699999999999999999887754 26788899998775543 3445567789999994 3333 3778
Q ss_pred CCeeEEEEeccc
Q 006737 533 MGLKMLVLDEAD 544 (633)
Q Consensus 533 s~l~~LVIDEAD 544 (633)
.++++||.-..-
T Consensus 358 p~v~~VI~~~~p 369 (579)
T 3sqw_A 358 PNVHEVLQIGVP 369 (579)
T ss_dssp TTCCEEEEESCC
T ss_pred ccCCEEEEcCCC
Confidence 889988876543
No 172
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=85.56 E-value=1.9 Score=44.27 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=51.6
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++|++-+..++..+... ++.+..++|+.....+. ..+..+..+|||||. .+.. .+++.
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~----Gidi~ 95 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAAR----GLDIP 95 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTC----STTCC
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhc----Ccccc
Confidence 4999999999999888776543 78899999997765543 344556789999993 2233 36677
Q ss_pred CeeEEEE
Q 006737 534 GLKMLVL 540 (633)
Q Consensus 534 ~l~~LVI 540 (633)
.+.+||.
T Consensus 96 ~v~~VI~ 102 (300)
T 3i32_A 96 QVDLVVH 102 (300)
T ss_dssp CCSEEEE
T ss_pred ceeEEEE
Confidence 8887774
No 173
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.49 E-value=1.8 Score=43.43 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=24.7
Q ss_pred eeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 535 l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
-.+|||||+|.+... ....+..+++..+....+|+.|
T Consensus 108 ~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 108 HKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred ceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 678999999998643 3344556666665556555544
No 174
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.18 E-value=1.2 Score=42.13 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.|.-+++.+++|+|||...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4567899999999999743
No 175
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.49 E-value=0.69 Score=48.56 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=29.9
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~ 477 (633)
..|.=+++.|++|+|||.. ++-+...+.... ..|+|++- -.-..|+..++..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~-al~ia~~~a~~g----------~~Vl~fSl-Ems~~ql~~Rlls 95 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSL-MMNMVLSALNDD----------RGVAVFSL-EMSAEQLALRALS 95 (338)
T ss_dssp CTTCEEEEEECTTSCHHHH-HHHHHHHHHHTT----------CEEEEEES-SSCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH-HHHHHHHHHHcC----------CeEEEEeC-CCCHHHHHHHHHH
Confidence 3466788999999999964 344444443321 24667654 2334455554433
No 176
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=84.40 E-value=24 Score=35.31 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=24.3
Q ss_pred eEEEEecccccCC---cChHHHHHHHHHHCCCCCcEEEEec
Q 006737 536 KMLVLDEADHLLD---LGFRKDVENIVDCLPRRRQSLLFSA 573 (633)
Q Consensus 536 ~~LVIDEAD~Lld---~gf~~~l~~Il~~lpk~~Q~IlfSA 573 (633)
-+|||||+|.+.. ..+...+..+....+ ...+|+.+.
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g~ 178 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSGS 178 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEES
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEcC
Confidence 4799999999864 346677777766543 344444443
No 177
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=84.37 E-value=2 Score=44.60 Aligned_cols=71 Identities=24% Similarity=0.284 Sum_probs=54.2
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++++.-|..++..+... ++.+..++|+....... ..+..+..+|||||. .+.. .+++.
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----Gidip 333 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR----GIDVE 333 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTS----SCCCT
T ss_pred CEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cccc----CCCcc
Confidence 6999999999999998888765 67788899987755433 345567789999994 3333 37788
Q ss_pred CeeEEEEe
Q 006737 534 GLKMLVLD 541 (633)
Q Consensus 534 ~l~~LVID 541 (633)
++++||.-
T Consensus 334 ~~~~Vi~~ 341 (412)
T 3fht_A 334 QVSVVINF 341 (412)
T ss_dssp TEEEEEES
T ss_pred CCCEEEEE
Confidence 99988853
No 178
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=84.32 E-value=2.9 Score=47.01 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.6
Q ss_pred HHHhCCCcEEEEccCCCCchhh
Q 006737 411 SACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 411 p~il~grDvLv~ApTGSGKTla 432 (633)
..+..+..+++.+|+|+|||..
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHH
Confidence 3456788999999999999984
No 179
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=84.29 E-value=2.2 Score=43.33 Aligned_cols=72 Identities=18% Similarity=0.303 Sum_probs=53.6
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.+++++-+..+++.+... ++.+..++|+....... ..+..+..+|||+|. .+..+ +++.
T Consensus 240 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id~~ 305 (367)
T 1hv8_A 240 YGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG----IDVN 305 (367)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH----CCCS
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----CCcc
Confidence 5899999999999988888765 67888999987655433 344567789999993 33333 6677
Q ss_pred CeeEEEEec
Q 006737 534 GLKMLVLDE 542 (633)
Q Consensus 534 ~l~~LVIDE 542 (633)
++++||.-.
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 888887643
No 180
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=83.88 E-value=1.4 Score=49.13 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.+..+++.+|+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477899999999999984
No 181
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=83.77 E-value=3.7 Score=46.72 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=58.8
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHH---HHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR---RLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~---~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++|+..|..+.+.+... ++.+..++|+........ .+..+..+|+|||. .+.. .+++.
T Consensus 447 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~----GlDip 512 (661)
T 2d7d_A 447 RVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLRE----GLDIP 512 (661)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCST----TCCCT
T ss_pred eEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhC----CcccC
Confidence 6999999999999988877765 678888898876554433 34557789999994 2233 37788
Q ss_pred CeeEEEEecccccC
Q 006737 534 GLKMLVLDEADHLL 547 (633)
Q Consensus 534 ~l~~LVIDEAD~Ll 547 (633)
.+++||+=++|...
T Consensus 513 ~v~lVi~~d~d~~G 526 (661)
T 2d7d_A 513 EVSLVAILDADKEG 526 (661)
T ss_dssp TEEEEEETTTTCCT
T ss_pred CCCEEEEeCccccc
Confidence 99999999998754
No 182
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=83.31 E-value=2.2 Score=43.68 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=57.1
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
.++||.++++.-|..+++.+... ++.+..++|+....... ..+..+..+|||+|. .+.. .+++
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----Gidi 309 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLAR----GIDI 309 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSS----SCCC
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhc----CCCc
Confidence 36999999999999988888765 67788999987655433 345567789999994 3333 3778
Q ss_pred CCeeEEEEecccc
Q 006737 533 MGLKMLVLDEADH 545 (633)
Q Consensus 533 s~l~~LVIDEAD~ 545 (633)
.++++||.-....
T Consensus 310 p~~~~Vi~~~~p~ 322 (395)
T 3pey_A 310 PTVSMVVNYDLPT 322 (395)
T ss_dssp TTEEEEEESSCCB
T ss_pred ccCCEEEEcCCCC
Confidence 8999999766554
No 183
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=83.00 E-value=1.7 Score=42.04 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=32.2
Q ss_pred CCeeEEEEecccccCCcC--hHHHHHHHHHHCCCCCcEEEEeccCChhhh
Q 006737 533 MGLKMLVLDEADHLLDLG--FRKDVENIVDCLPRRRQSLLFSATMPKELV 580 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~g--f~~~l~~Il~~lpk~~Q~IlfSATl~~el~ 580 (633)
..+++|||||+-..+..+ -.+.+..++...|...-+|+.+--.|+++.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 568999999997655444 356677777776666555555555555554
No 184
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=82.80 E-value=2.5 Score=43.79 Aligned_cols=70 Identities=10% Similarity=0.237 Sum_probs=53.5
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.+++++-+..+++.+... ++.+..++|+....... ..+..+..+|||+|. .+.. .+++.
T Consensus 260 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~----Gidip 325 (400)
T 1s2m_A 260 QAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTR----GIDIQ 325 (400)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSS----SCCCT
T ss_pred cEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccc----CCCcc
Confidence 6999999999999999888776 67788899987755433 345567789999993 2222 37788
Q ss_pred CeeEEEE
Q 006737 534 GLKMLVL 540 (633)
Q Consensus 534 ~l~~LVI 540 (633)
.+.+||.
T Consensus 326 ~~~~Vi~ 332 (400)
T 1s2m_A 326 AVNVVIN 332 (400)
T ss_dssp TEEEEEE
T ss_pred CCCEEEE
Confidence 8888875
No 185
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.62 E-value=2.2 Score=43.91 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=54.7
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.+++++.+..+++.+... ++.+..++|+....... ..+..+...|||||. .+.. .+++.
T Consensus 252 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~----Gidi~ 317 (391)
T 1xti_A 252 QVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGR----GMDIE 317 (391)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCSS----CBCCT
T ss_pred cEEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhhc----CCCcc
Confidence 6999999999999988887764 67788999987655432 345567789999993 2222 37788
Q ss_pred CeeEEEEecc
Q 006737 534 GLKMLVLDEA 543 (633)
Q Consensus 534 ~l~~LVIDEA 543 (633)
.+++||.-..
T Consensus 318 ~~~~Vi~~~~ 327 (391)
T 1xti_A 318 RVNIAFNYDM 327 (391)
T ss_dssp TEEEEEESSC
T ss_pred cCCEEEEeCC
Confidence 8999987544
No 186
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=82.08 E-value=0.86 Score=45.95 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.6
Q ss_pred hCCCcEEEEccCCCCchhhh
Q 006737 414 LEGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlay 433 (633)
..|.-+++.|++|+|||...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHH
Confidence 45778899999999999743
No 187
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.93 E-value=2.3 Score=46.69 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=27.5
Q ss_pred cCccccCCCHHHHHHHHHcC--CCCCcHHHHHHHHHH--hCCCcEEEEccCCCCchhh
Q 006737 379 KRFDECGISPLTIKALTAAG--YIQMTRVQEATLSAC--LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g--~~~pt~iQ~~aIp~i--l~grDvLv~ApTGSGKTla 432 (633)
.+|+++.-....++.|.+.- +..+. .+..+ .-.+.+++++|+|+|||+.
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLL 65 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHH
Confidence 45777765555555554420 11111 11111 1125699999999999984
No 188
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=81.84 E-value=1.2 Score=47.97 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=45.4
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
++||++|+++-|..+++.+... ++.+..++|... ......+..+..+|||||. .+.. .+++. ++
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~R-~~~~~~F~~g~~~vLVaT~-----v~e~----GiDip-v~ 242 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTF-EREYPTIKQKKPDFILATD-----IAEM----GANLC-VE 242 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSC-C--------CCCSEEEESS-----STTC----CTTCC-CS
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchhH-HHHHhhhcCCCceEEEECC-----hhhe----eeccC-ce
Confidence 5999999999999998887765 678889998433 3345566677889999994 2333 36677 88
Q ss_pred EEE
Q 006737 537 MLV 539 (633)
Q Consensus 537 ~LV 539 (633)
+||
T Consensus 243 ~VI 245 (440)
T 1yks_A 243 RVL 245 (440)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 189
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=81.84 E-value=1.4 Score=47.89 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=29.4
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHH
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~ 476 (633)
..|.-+++.|++|+|||.. ++-+..++...+ ..|+|++-- +-..|+...+.
T Consensus 195 ~~G~liiIaG~pG~GKTtl-al~ia~~~a~~g----------~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAF-ALKQAKNMSDND----------DVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp CSSCEEEEEECSSSSHHHH-HHHHHHHHHHTT----------CEEEEECSS-SCTTHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHH-HHHHHHHHHHcC----------CEEEEEECC-CCHHHHHHHHH
Confidence 3466789999999999964 444444443321 247776532 33344444443
No 190
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=81.51 E-value=2.8 Score=44.74 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=53.3
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccCC
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~ 534 (633)
+||.++++.-|..+++.+... ++.+..++|+....... ..++.+.++|||||. .+.. .+++.+
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~r----GlDi~~ 368 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASR----GLDIKN 368 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTS----SCCCTT
T ss_pred EEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhC----CCCccc
Confidence 899999999999988877664 67889999987755433 345567789999995 3333 377889
Q ss_pred eeEEEE
Q 006737 535 LKMLVL 540 (633)
Q Consensus 535 l~~LVI 540 (633)
+++||.
T Consensus 369 v~~VI~ 374 (434)
T 2db3_A 369 IKHVIN 374 (434)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 998886
No 191
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=81.28 E-value=3.6 Score=46.84 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=57.7
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHH---HHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR---RLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~---~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++|+..|..+.+.+... ++.+..++|+........ .+..+..+|+|||. .+.. .+++.
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~~----GlDip 506 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLRE----GLDIP 506 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCT----TCCCT
T ss_pred EEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhhc----CccCC
Confidence 6999999999999988877765 678888898876554333 35567789999993 2222 37788
Q ss_pred CeeEEEEeccccc
Q 006737 534 GLKMLVLDEADHL 546 (633)
Q Consensus 534 ~l~~LVIDEAD~L 546 (633)
.+++||+=+++..
T Consensus 507 ~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 507 EVSLVAILDADKE 519 (664)
T ss_dssp TEEEEEETTTTSC
T ss_pred CCCEEEEeCCccc
Confidence 9999999888765
No 192
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=81.12 E-value=2.7 Score=43.77 Aligned_cols=70 Identities=13% Similarity=0.263 Sum_probs=53.1
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++++..+..+++.+... ++.+..++|+....... ..+..+..+|||+|. .+.. .+++.
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----Gidi~ 343 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWAR----GLDVP 343 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSS----SCCCT
T ss_pred cEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhC----cCCcc
Confidence 6999999999999988887764 67788999987755433 344556789999994 2333 37788
Q ss_pred CeeEEEE
Q 006737 534 GLKMLVL 540 (633)
Q Consensus 534 ~l~~LVI 540 (633)
.+.+||.
T Consensus 344 ~v~~Vi~ 350 (410)
T 2j0s_A 344 QVSLIIN 350 (410)
T ss_dssp TEEEEEE
T ss_pred cCCEEEE
Confidence 9998886
No 193
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=80.71 E-value=2.1 Score=45.17 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=18.7
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l 441 (633)
.|.-+++.+|+|+|||.. ++.++..+
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHH
Confidence 466789999999999974 44444433
No 194
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.40 E-value=1.3 Score=46.60 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.|.-+++.+++|+|||...
T Consensus 60 ~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp TTSEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4677999999999999743
No 195
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=79.95 E-value=3.3 Score=46.48 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=53.2
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
..+||.++|+.-+.+++..+... ++.+..++|+...... ...+..+..+|||||. .+.. .+++
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~~~----GID~ 333 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AFGM----GIDK 333 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TSCT----TCCC
T ss_pred CCeEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhhc----CCCc
Confidence 36999999999999999888764 7789999999875543 3445567789999993 2222 3667
Q ss_pred CCeeEEEE
Q 006737 533 MGLKMLVL 540 (633)
Q Consensus 533 s~l~~LVI 540 (633)
.++++||.
T Consensus 334 p~V~~VI~ 341 (591)
T 2v1x_A 334 PDVRFVIH 341 (591)
T ss_dssp SCEEEEEE
T ss_pred ccccEEEE
Confidence 78887774
No 196
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=79.31 E-value=6.5 Score=40.95 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=51.4
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEEC--------CccchHH---HHHHhcCCCcEEEECchhhHHHHhcc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG--------GTRFKVD---QRRLESDPCQILVATPGRLLDHIENK 525 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~G--------g~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~ 525 (633)
++||.++++..+..+++.+... ++.+..++| +...... ...+..+.++|||+|. .+..
T Consensus 363 k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~~- 431 (494)
T 1wp9_A 363 KIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGEE- 431 (494)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGGG-
T ss_pred eEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cccc-
Confidence 5999999999999988887765 678888998 5544333 2345556789999993 2333
Q ss_pred cCcccccCCeeEEEEecc
Q 006737 526 SGLSVRLMGLKMLVLDEA 543 (633)
Q Consensus 526 ~~~~~~Ls~l~~LVIDEA 543 (633)
.+++..+.+||+-+.
T Consensus 432 ---Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 432 ---GLDVPEVDLVVFYEP 446 (494)
T ss_dssp ---GGGSTTCCEEEESSC
T ss_pred ---CCCchhCCEEEEeCC
Confidence 377888888886443
No 197
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=79.18 E-value=11 Score=38.23 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=23.9
Q ss_pred CCeeEEEEecccccC-CcChHHHHHHHHHHCCCCCcEEEEeccCC
Q 006737 533 MGLKMLVLDEADHLL-DLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 533 s~l~~LVIDEAD~Ll-d~gf~~~l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
...++||||++-.+. +......+..+...+.+..-++++.++..
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~ 223 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG 223 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc
Confidence 456789999984433 32234455555554443333445666644
No 198
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=79.05 E-value=3.4 Score=43.69 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=19.8
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
.|.-+++.+++|+|||.. ++.++..+..
T Consensus 73 ~G~li~I~G~pGsGKTtl-al~la~~~~~ 100 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTL-ALAIVAQAQK 100 (366)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHH-HHHHHHHHHH
Confidence 467789999999999964 4445444433
No 199
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=78.71 E-value=4.3 Score=44.55 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=38.0
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
.+..+.+.+-||||||++ +..+ ...... .+|||+|+...|.|++..+..++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l---~~~~~~---------p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEI---AERHAG---------PVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHH---HHHSSS---------CEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHH--HHHH---HHHhCC---------CEEEEeCCHHHHHHHHHHHHhhCC
Confidence 455688999999999974 2222 222111 289999999999999999988753
No 200
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.44 E-value=2.9 Score=48.20 Aligned_cols=26 Identities=8% Similarity=0.141 Sum_probs=17.9
Q ss_pred eeEEEEecccccCCcChHHHHHHHHHH
Q 006737 535 LKMLVLDEADHLLDLGFRKDVENIVDC 561 (633)
Q Consensus 535 l~~LVIDEAD~Lld~gf~~~l~~Il~~ 561 (633)
..+|+|||+|.+.. .....+..+++.
T Consensus 580 ~~vl~lDEi~~~~~-~~~~~Ll~~le~ 605 (758)
T 3pxi_A 580 YSVVLLDAIEKAHP-DVFNILLQVLED 605 (758)
T ss_dssp SSEEEEECGGGSCH-HHHHHHHHHHHH
T ss_pred CeEEEEeCccccCH-HHHHHHHHHhcc
Confidence 34899999998753 355566666654
No 201
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=78.42 E-value=2.6 Score=49.16 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.++.+++++|+|+|||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 467899999999999974
No 202
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=78.28 E-value=1.4 Score=39.50 Aligned_cols=20 Identities=5% Similarity=0.076 Sum_probs=17.0
Q ss_pred HhCCCcEEEEccCCCCchhh
Q 006737 413 CLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTla 432 (633)
...+.++++.+++|+|||.+
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 45677999999999999974
No 203
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=79.62 E-value=0.43 Score=44.19 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=50.4
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++++..+..++..+... ++.+..++|+....... ..+..+.++|||+|. .+..+ +++.
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----id~~ 97 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAARG----IDIP 97 (170)
Confidence 5899999999999988877665 66778888886654332 334456678999992 33333 5667
Q ss_pred CeeEEEEec
Q 006737 534 GLKMLVLDE 542 (633)
Q Consensus 534 ~l~~LVIDE 542 (633)
.+.+||.-+
T Consensus 98 ~~~~Vi~~~ 106 (170)
T 2yjt_D 98 DVSHVFNFD 106 (170)
Confidence 777777533
No 204
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=77.35 E-value=3.8 Score=45.15 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=52.5
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
.+||.++|+.-+..+++.+... ++.+..++|+...... ...+..+..+|||||. .+.. .+++.
T Consensus 238 ~~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~~~----GiD~p 303 (523)
T 1oyw_A 238 SGIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AFGM----GINKP 303 (523)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TSCT----TTCCT
T ss_pred cEEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhhC----CCCcc
Confidence 4899999999999998888764 6788999999875543 3455567789999995 2222 36677
Q ss_pred CeeEEEE
Q 006737 534 GLKMLVL 540 (633)
Q Consensus 534 ~l~~LVI 540 (633)
++++||.
T Consensus 304 ~v~~VI~ 310 (523)
T 1oyw_A 304 NVRFVVH 310 (523)
T ss_dssp TCCEEEE
T ss_pred CccEEEE
Confidence 7887775
No 205
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=77.13 E-value=3.3 Score=50.35 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=60.5
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
-+++|++++++-+..+++.+.+.+ +++.+..++|+....... ..+..+.++|||||. .+..+ +++
T Consensus 813 ~qvlvf~~~v~~~~~l~~~L~~~~---p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e~G----iDi 880 (1151)
T 2eyq_A 813 GQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----IDI 880 (1151)
T ss_dssp CEEEEECCCSSCHHHHHHHHHHHC---TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGGG----SCC
T ss_pred CeEEEEECCHHHHHHHHHHHHHhC---CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cceee----ecc
Confidence 479999999999999988888774 467899999987755432 345567789999995 33443 788
Q ss_pred CCeeEEEEecccc
Q 006737 533 MGLKMLVLDEADH 545 (633)
Q Consensus 533 s~l~~LVIDEAD~ 545 (633)
.++.+||+..++.
T Consensus 881 p~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 881 PTANTIIIERADH 893 (1151)
T ss_dssp TTEEEEEETTTTS
T ss_pred cCCcEEEEeCCCC
Confidence 8999999887765
No 206
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=76.86 E-value=4.5 Score=46.95 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=54.8
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHh------cCCCceEEEEECCccchHHHHHHh--------cCCCcEEEECchhhHHHH
Q 006737 457 YVLILCPTRELASQIAAEAIALLK------NHDGIGVLTLVGGTRFKVDQRRLE--------SDPCQILVATPGRLLDHI 522 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~------~~~~i~v~~l~Gg~~~~~~~~~l~--------~~~~dILIaTPgrLl~lL 522 (633)
.+||.+|++.-+..+++.+...+. ...++.+..++|+.....+...+. .+...|||||. .+
T Consensus 305 ~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-----ia 379 (773)
T 2xau_A 305 DILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-----IA 379 (773)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----HH
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----HH
Confidence 699999999999999988876432 224788999999988766554443 34568999994 33
Q ss_pred hcccCcccccCCeeEEEE
Q 006737 523 ENKSGLSVRLMGLKMLVL 540 (633)
Q Consensus 523 ~~~~~~~~~Ls~l~~LVI 540 (633)
..+ +++..+.+||-
T Consensus 380 e~G----idIp~v~~VId 393 (773)
T 2xau_A 380 ETS----LTIDGIVYVVD 393 (773)
T ss_dssp HHT----CCCTTEEEEEE
T ss_pred HhC----cCcCCeEEEEe
Confidence 333 67788887663
No 207
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=76.86 E-value=1.7 Score=39.02 Aligned_cols=20 Identities=15% Similarity=0.116 Sum_probs=17.0
Q ss_pred hCCCcEEEEccCCCCchhhh
Q 006737 414 LEGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlay 433 (633)
..+.++++.+++|+|||...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45679999999999999743
No 208
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=76.81 E-value=3.1 Score=47.61 Aligned_cols=67 Identities=10% Similarity=0.154 Sum_probs=48.8
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
++||++|+++-+..+++.+... ++.+..++|.. .......+..+..+|||||. .+..+ +++. +.
T Consensus 412 ~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaTd-----v~e~G----IDip-v~ 475 (673)
T 2wv9_A 412 KTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITTD-----ISEMG----ANFG-AS 475 (673)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSSS-HHHHGGGGGTCCCSEEEECG-----GGGTT----CCCC-CS
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChHH-HHHHHHHHHCCCceEEEECc-----hhhcc----eeeC-Cc
Confidence 6999999999999888777654 67899999853 23344566677889999993 33333 5666 77
Q ss_pred EEE
Q 006737 537 MLV 539 (633)
Q Consensus 537 ~LV 539 (633)
+||
T Consensus 476 ~VI 478 (673)
T 2wv9_A 476 RVI 478 (673)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 209
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=75.85 E-value=2.3 Score=45.37 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=19.9
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
...+++|.|+||||||.+. -+++..+..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~ 79 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL 79 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 3468999999999999874 334444443
No 210
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=74.54 E-value=2.3 Score=54.28 Aligned_cols=120 Identities=17% Similarity=0.218 Sum_probs=64.3
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEEC
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~G 492 (633)
+-.++++++++++|+|||...+.-+.+.+ +.. -+++++. .-++..+++ ...+......+
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~-k~G----------e~~~Fit-~ee~~~~L~--a~~~G~dl~~l------- 1136 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REG----------KTCAFID-AEHALDPIY--ARKLGVDIDNL------- 1136 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH-TTT----------CCEEEEC-TTSCCCHHH--HHHTTCCTTTC-------
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH-HcC----------CeEEEEE-ccccHHHHH--HHHcCCChhHh-------
Confidence 33578999999999999985443333333 221 1366664 455555555 22332211111
Q ss_pred CccchHHHHHHhcCCCcEEEECc---hhhHHHHhcccCcccccCCeeEEEEecccccCC-------c-----C-----hH
Q 006737 493 GTRFKVDQRRLESDPCQILVATP---GRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-------L-----G-----FR 552 (633)
Q Consensus 493 g~~~~~~~~~l~~~~~dILIaTP---grLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld-------~-----g-----f~ 552 (633)
++..| +....++..- ......++||||++..+.- + | +.
T Consensus 1137 ------------------~~~~pd~~e~~~~i~~~l----~~~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~ 1194 (2050)
T 3cmu_A 1137 ------------------LCSQPDTGEQALEICDAL----ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 1194 (2050)
T ss_dssp ------------------EEECCSSHHHHHHHHHHH----HHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHH
T ss_pred ------------------eeecCcchHHHHHHHHHH----HHhCCCCEEEECCcccccccccccccccccchhHHHHHHH
Confidence 11112 1112221111 1235688999999887731 1 1 33
Q ss_pred HHHHHHHHHCCCCCcEEEEeccC
Q 006737 553 KDVENIVDCLPRRRQSLLFSATM 575 (633)
Q Consensus 553 ~~l~~Il~~lpk~~Q~IlfSATl 575 (633)
..+..+...+....-+++++...
T Consensus 1195 ~~L~~L~~~l~e~~stiI~tN~~ 1217 (2050)
T 3cmu_A 1195 QAMRKLAGNLKQSNTLLIFINQI 1217 (2050)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECC
T ss_pred HHHHHHHHHHHhCCeEEEEecCC
Confidence 45666777666666677777654
No 211
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=74.22 E-value=4.2 Score=43.77 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=49.0
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
++||.+|++.-|.++++.+... ++.+..+++... ......+..+..+|||||. .+..+ +++.. .
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~~G----iDip~-~ 253 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISEMG----ANFRA-G 253 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGGSS----CCCCC-S
T ss_pred CEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHHhC----cCCCC-C
Confidence 4999999999999988877654 677888888765 3345566677889999994 33333 66666 5
Q ss_pred EEE
Q 006737 537 MLV 539 (633)
Q Consensus 537 ~LV 539 (633)
+||
T Consensus 254 ~VI 256 (451)
T 2jlq_A 254 RVI 256 (451)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 212
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=74.18 E-value=6.5 Score=45.91 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=28.6
Q ss_pred CeeEEEEecccccCCc------C----hHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 534 GLKMLVLDEADHLLDL------G----FRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~------g----f~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
.-.+|+|||+|.|... + ...++...+..+....+++++-||..++
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d 351 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTT
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChh
Confidence 3457999999998732 1 2233344455555556788888887554
No 213
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=73.26 E-value=6.4 Score=40.84 Aligned_cols=18 Identities=17% Similarity=-0.049 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.|.-+++.|++|+|||..
T Consensus 121 ~G~i~~I~G~~GsGKTtl 138 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQL 138 (343)
T ss_dssp SSEEEEEECCTTCTHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356789999999999974
No 214
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=72.65 E-value=3.4 Score=43.50 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=18.8
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l 441 (633)
.|+-+++.+++|+|||... +.++..+
T Consensus 62 ~G~ii~I~G~pGsGKTtLa-l~la~~~ 87 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLT-LQVIAAA 87 (356)
T ss_dssp TTSEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4678999999999999753 3344333
No 215
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.63 E-value=6 Score=49.88 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=71.8
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCcc
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~ 495 (633)
|+-+.+.+|.|||||.. +++++....+... .|+++.+-.+|.... ++++. + +
T Consensus 1431 g~~iei~g~~~sGkttl-~~~~~a~~~~~g~----------~~~~i~~e~~~~~~~---~~~~G-----v---------~ 1482 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTL-TLQVIAAAQREGK----------TCAFIDAEHALDPIY---ARKLG-----V---------D 1482 (1706)
T ss_dssp TSEEEEECSTTSSHHHH-HHHHHHHHHHTTC----------CEEEECTTSCCCHHH---HHHTT-----C---------C
T ss_pred CCEEEEEcCCCCCHHHH-HHHHHHHHHhcCC----------eEEEEecCCCCCHHH---HHHcC-----C---------C
Confidence 47799999999999985 4455544443321 388888877665543 44442 1 1
Q ss_pred chHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecccccCCcC-----------------hHHHHHHH
Q 006737 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-----------------FRKDVENI 558 (633)
Q Consensus 496 ~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD~Lld~g-----------------f~~~l~~I 558 (633)
.. +++|.-|..-.++|.--.. .+.-..+++||||.+..|.... +...+.++
T Consensus 1483 ~~-----------~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l 1550 (1706)
T 3cmw_A 1483 ID-----------NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 1550 (1706)
T ss_dssp GG-----------GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHH
T ss_pred HH-----------HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHH
Confidence 11 4777777554333321100 1223468899999999886421 22335555
Q ss_pred HHHCCCCCcEEEEeccCChh
Q 006737 559 VDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 559 l~~lpk~~Q~IlfSATl~~e 578 (633)
...+.+..-+++|...+...
T Consensus 1551 ~~~~~~~~~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1551 AGNLKQSNTLLIFINQIRMK 1570 (1706)
T ss_dssp HHHHHHHTCEEEEEECBC--
T ss_pred HHHHHhCCcEEEEeeccccc
Confidence 55665555577777776543
No 216
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=70.48 E-value=6.4 Score=45.03 Aligned_cols=74 Identities=19% Similarity=0.337 Sum_probs=54.9
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccch---HHHHHHhc--CCCcEEEECchhhHHHHhcccCccccc
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK---VDQRRLES--DPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~---~~~~~l~~--~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
.||+++++.-+..+++.+... ++.+..++|+.... .....+.. +..+|||||. .+.. .+++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~----GlDi 388 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGM----GLNL 388 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGS----SCCC
T ss_pred CEEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHC----CcCc
Confidence 467799998888888777763 67899999998766 34456665 6689999994 3333 3778
Q ss_pred CCeeEEEEeccccc
Q 006737 533 MGLKMLVLDEADHL 546 (633)
Q Consensus 533 s~l~~LVIDEAD~L 546 (633)
.+.+||+-.+...
T Consensus 389 -~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 389 -SIRRIIFYSLIKP 401 (677)
T ss_dssp -CBSEEEESCSBC-
T ss_pred -CccEEEECCcccc
Confidence 8999998877654
No 217
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=70.33 E-value=5.2 Score=38.60 Aligned_cols=39 Identities=18% Similarity=0.010 Sum_probs=29.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCCchhhhHHHHHHHH
Q 006737 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV 441 (633)
Q Consensus 401 ~pt~iQ~~aIp~il~grDvLv~ApTGSGKTlaylLPiL~~l 441 (633)
.-+.-|..++..+..|.-+.+.+|+|+|||+. +-++.-+
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL--l~~l~Gl 45 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL--AMAKAVQ 45 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH--HHHHHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 34455677788888898899999999999984 4444444
No 218
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=70.15 E-value=3.3 Score=48.43 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=32.3
Q ss_pred cccCccccCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 377 SQKRFDECGISPLTIKALTAAG---YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 377 ~~~~F~el~L~~~Ll~~L~~~g---~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
+..+|++++.-+.+.+.|.+.= ...|..++.. -+...+-+|+.+|.|+|||+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCchHH
Confidence 3457889888888888887641 1111111000 011235799999999999973
No 219
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=69.97 E-value=4.7 Score=43.16 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=41.8
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTP 515 (633)
++||++|+++-|..+++.+... ++.+..++|+.. ......+..+..+|||||.
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTH-HHHTTHHHHSCCSEEEECG
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccH-HHHHHhhcCCCCeEEEECc
Confidence 5999999999999998887765 678899998743 3344566667889999994
No 220
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=69.58 E-value=6.2 Score=46.19 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
..+++++||+|+|||..
T Consensus 191 ~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCCEEEECTTSCHHHH
T ss_pred CCceEEEcCCCCCHHHH
Confidence 34899999999999974
No 221
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=69.46 E-value=2.8 Score=43.06 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.|.-+++.|++|+|||..
T Consensus 106 ~G~i~~i~G~~GsGKT~l 123 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQL 123 (324)
T ss_dssp TTSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHhHH
Confidence 357789999999999974
No 222
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=69.15 E-value=4.2 Score=41.51 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.|.-+++.+++|+|||..
T Consensus 97 ~g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp TTEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356789999999999974
No 223
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=68.57 E-value=6.7 Score=44.28 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=48.5
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCee
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~ 536 (633)
++||.++|+.-|..+++.+... ++.+..++|... ......+..+..+|||||. .+..+ +++. ++
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~R-~~~l~~F~~g~~~VLVaTd-----v~~rG----iDi~-v~ 420 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISEMG----ANFR-AG 420 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTTH-HHHTTHHHHSCCSEEEECG-----GGGTT----CCCC-CS
T ss_pred CEEEEECChhHHHHHHHHHHHc-----CCcEEEEChHHH-HHHHHhhcCCCcEEEEECc-----HHHcC----cccC-ce
Confidence 5999999999999998888765 677888888533 2344556667789999995 33333 5564 66
Q ss_pred EEE
Q 006737 537 MLV 539 (633)
Q Consensus 537 ~LV 539 (633)
+||
T Consensus 421 ~VI 423 (618)
T 2whx_A 421 RVI 423 (618)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=68.04 E-value=19 Score=37.22 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=20.1
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHh
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~ 444 (633)
.|.-+.+++|+|+|||. ++-.|..++..
T Consensus 128 ~g~vi~lvG~nGaGKTT--ll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTT--TIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHH--HHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHH--HHHHHHHHHHh
Confidence 45678899999999998 44455555543
No 225
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=67.48 E-value=6.9 Score=40.82 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
|.-+.+.+++|+|||...
T Consensus 131 G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567889999999999743
No 226
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=67.01 E-value=6.3 Score=45.04 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=47.7
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCCe
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l 535 (633)
-++||.++|++-+..+++.+.+. ++.+..++|+..... ...++.+|||||. .+..+ +++. +
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~e----r~~~~~~VLVATd-----VaerG----IDId-V 457 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSV----IPTIGDVVVVATD-----ALMTG----YTGD-F 457 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGG----SCSSSCEEEEECT-----THHHH----CCCC-B
T ss_pred CcEEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHH----HHhCCCcEEEECC-----hHHcc----CCCC-C
Confidence 47999999999999988877653 788999999887543 2344569999994 33333 5554 7
Q ss_pred eEEE
Q 006737 536 KMLV 539 (633)
Q Consensus 536 ~~LV 539 (633)
++||
T Consensus 458 ~~VI 461 (666)
T 3o8b_A 458 DSVI 461 (666)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7766
No 227
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=66.77 E-value=4.7 Score=41.78 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=45.1
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.+++++-+..+++.+... ++.+..++|+....... ..+..+..+|||+|. .+.. .+++.
T Consensus 282 ~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----Gidip 347 (414)
T 3eiq_A 282 QAVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LLAR----GIDVQ 347 (414)
T ss_dssp SCEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SCC------CCGG
T ss_pred cEEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----cccc----CCCcc
Confidence 4899999999999888777654 67788889987655433 345556789999994 2222 36677
Q ss_pred CeeEEEE
Q 006737 534 GLKMLVL 540 (633)
Q Consensus 534 ~l~~LVI 540 (633)
.+.+||.
T Consensus 348 ~v~~Vi~ 354 (414)
T 3eiq_A 348 QVSLVIN 354 (414)
T ss_dssp GCSCEEE
T ss_pred CCCEEEE
Confidence 8888775
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=66.74 E-value=15 Score=40.60 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=19.0
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHHh
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~~ 444 (633)
|.-+.++|++|+|||.. +-+|..++..
T Consensus 293 GeVI~LVGpNGSGKTTL--l~~LAgll~~ 319 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTT--IGKLARQFEQ 319 (503)
T ss_dssp TEEEEEECCTTSSHHHH--HHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHH--HHHHHHHhhh
Confidence 44678999999999984 4445555543
No 229
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=65.79 E-value=3.3 Score=41.47 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=20.6
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
+..|.-+++++|||||||.. +-++..++.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl--l~~l~g~~~ 50 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT--IASMIDYIN 50 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH--HHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHH--HHHHHHhCC
Confidence 45677899999999999984 334444443
No 230
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=65.72 E-value=9.9 Score=40.57 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.|.-+++.+++|+|||...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLC 195 (400)
T ss_dssp TTSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEEcCCCCChHHHH
Confidence 3567899999999999743
No 231
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=65.46 E-value=6.5 Score=40.72 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
....++++||+|+|||++.
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999843
No 232
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=65.20 E-value=8.2 Score=38.23 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
...++++||+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 56899999999999974
No 233
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=64.96 E-value=7.6 Score=41.76 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=14.9
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.|.-+++++|||||||..
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 345689999999999983
No 234
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=64.14 E-value=29 Score=37.30 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=50.2
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCCCcEEEECchhhHHHHhcccCcccccCC
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~ 534 (633)
.+|++...+-+..+.+.+... +..+..++|+...... ...+..+..+|||||+..+. .+ +++..
T Consensus 350 ~~ivf~~~~~~~~l~~~L~~~-----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~----~G----iDip~ 416 (510)
T 2oca_A 350 AFVMFKHVSHGKAIFDLIKNE-----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS----TG----ISVKN 416 (510)
T ss_dssp EEEEESSHHHHHHHHHHHHTT-----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH----HS----CCCCS
T ss_pred eEEEEecHHHHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh----cc----ccccc
Confidence 455555566666555555433 3478899998775543 23455677899999965543 33 67889
Q ss_pred eeEEEEecccc
Q 006737 535 LKMLVLDEADH 545 (633)
Q Consensus 535 l~~LVIDEAD~ 545 (633)
+.+||+..+..
T Consensus 417 v~~vi~~~~~~ 427 (510)
T 2oca_A 417 LHHVVLAHGVK 427 (510)
T ss_dssp EEEEEESSCCC
T ss_pred CcEEEEeCCCC
Confidence 99999988773
No 235
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=62.92 E-value=5.2 Score=43.16 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=40.8
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTP 515 (633)
++||.+|++.-|..+++.+... ++.+..+++... ......+..+..+|||||.
T Consensus 192 ~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~~R-~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 192 KTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRKSY-DTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTTCC-CCCGGGSSSCCCSEEEESS
T ss_pred CEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHHHH-HHHHhhccCCCceEEEECC
Confidence 4999999999999998888765 678888888633 2234455667789999993
No 236
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=62.91 E-value=3.7 Score=45.39 Aligned_cols=39 Identities=23% Similarity=0.143 Sum_probs=25.2
Q ss_pred HHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCCchhh
Q 006737 392 KALTAAGYIQMTRVQEATLSA-CLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 392 ~~L~~~g~~~pt~iQ~~aIp~-il~grDvLv~ApTGSGKTla 432 (633)
..|.+.|. +++.+..-+.. +..|..++++||||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445552 33444443433 45788999999999999983
No 237
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=62.69 E-value=4.5 Score=42.37 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=50.8
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEE-EEECCccchHHHHHHhcCCCcEEEE----CchhhHHHHhcccCcccc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVL-TLVGGTRFKVDQRRLESDPCQILVA----TPGRLLDHIENKSGLSVR 531 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~-~l~Gg~~~~~~~~~l~~~~~dILIa----TPgrLl~lL~~~~~~~~~ 531 (633)
++||.++++.-|..++..+... ++.+. .++|. ... ...+..+..+|||| |. .+.. .++
T Consensus 254 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~h~~--~r~-~~~f~~g~~~vLvat~s~T~-----~~~~----GiD 316 (414)
T 3oiy_A 254 GILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYG-----KLTR----GVD 316 (414)
T ss_dssp SEEEEESSHHHHHHHHHHHHHT-----TCCEEESSSCH--HHH-HHHHHTTSCSEEEEECCTTC-----CCCC----CCC
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCceehhhcCc--chH-HHHHhCCCCeEEEEecCcCc-----hhhc----cCc
Confidence 4999999999999998888764 66776 56664 223 67777788999999 63 1222 377
Q ss_pred cCC-eeEEEEecc
Q 006737 532 LMG-LKMLVLDEA 543 (633)
Q Consensus 532 Ls~-l~~LVIDEA 543 (633)
+.+ +++||.-..
T Consensus 317 ip~~v~~VI~~~~ 329 (414)
T 3oiy_A 317 LPERIKYVIFWGT 329 (414)
T ss_dssp CTTTCCEEEEESC
T ss_pred cccccCEEEEECC
Confidence 888 898886444
No 238
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=62.09 E-value=12 Score=37.31 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=47.9
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.+++++.+..+++.+. .+..++|+....... ..+..+..+|||||. .+..+ +++.
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id~~ 283 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VASRG----LDIP 283 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHHTT----CCCC
T ss_pred cEEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccccC----CCcc
Confidence 59999999999887665443 356778876654433 344567789999993 44444 7788
Q ss_pred CeeEEEEec
Q 006737 534 GLKMLVLDE 542 (633)
Q Consensus 534 ~l~~LVIDE 542 (633)
.+++||.-.
T Consensus 284 ~~~~Vi~~~ 292 (337)
T 2z0m_A 284 LVEKVINFD 292 (337)
T ss_dssp CBSEEEESS
T ss_pred CCCEEEEec
Confidence 888888643
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=62.07 E-value=4.6 Score=38.20 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=18.0
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~ 442 (633)
.|+-++++||+|+|||.. +-+|..++
T Consensus 3 ~g~~i~lvGpsGaGKSTL--l~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL--LKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 467789999999999984 44444443
No 240
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=61.53 E-value=4.1 Score=42.68 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=17.7
Q ss_pred HHhCCCcEEEEccCCCCchh
Q 006737 412 ACLEGKDAVVKAKTGTGKSI 431 (633)
Q Consensus 412 ~il~grDvLv~ApTGSGKTl 431 (633)
.+..|..++++||||||||.
T Consensus 171 ~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHH
T ss_pred HHhcCCEEEEECCCCCCHHH
Confidence 35578899999999999998
No 241
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=60.49 E-value=9.4 Score=39.87 Aligned_cols=93 Identities=10% Similarity=0.032 Sum_probs=50.3
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccch
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~ 497 (633)
-+++.+|+|+|||.. ++.++....+... +-+|+++..-..+.. . .+..+. + ..
T Consensus 30 iteI~G~pGsGKTtL-~Lq~~~~~~~~g~--------g~~vlyId~E~s~~~-~--ra~~lG-----v---------d~- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNF-GLTMVSSYMRQYP--------DAVCLFYDSEFGITP-A--YLRSMG-----V---------DP- 82 (333)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHHHHCT--------TCEEEEEESSCCCCH-H--HHHHTT-----C---------CG-
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHhcCC--------CceEEEEeccchhhH-H--HHHHhC-----C---------CH-
Confidence 578999999999975 3444444443211 125888876554432 2 233332 1 10
Q ss_pred HHHHHHhcCCCcEEEECchhhHHH-HhcccCc-ccccCCeeEEEEecccccC
Q 006737 498 VDQRRLESDPCQILVATPGRLLDH-IENKSGL-SVRLMGLKMLVLDEADHLL 547 (633)
Q Consensus 498 ~~~~~l~~~~~dILIaTPgrLl~l-L~~~~~~-~~~Ls~l~~LVIDEAD~Ll 547 (633)
-+++++.|..+... +.--... .+.-..+++||||-+..|.
T Consensus 83 ----------d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ----------ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ----------GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ----------HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 14666666554443 2110000 0122368899999999885
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=60.45 E-value=53 Score=35.27 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.++-+++++++|+|||...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456778899999999853
No 243
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=60.11 E-value=20 Score=38.85 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.2
Q ss_pred HhCCCcEEEEccCCCCchhh
Q 006737 413 CLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTla 432 (633)
+..|.-+++.|++|+|||..
T Consensus 239 l~~G~l~li~G~pG~GKT~l 258 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTF 258 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHH
Confidence 34566789999999999974
No 244
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=59.92 E-value=8.1 Score=42.54 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=25.6
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 399 ~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
+..-..+-..++-.+..+.+++++||+|+|||..
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 4344444455666677889999999999999973
No 245
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=59.68 E-value=6.6 Score=37.52 Aligned_cols=18 Identities=39% Similarity=0.621 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.|.-+++.|++|+|||..
T Consensus 29 ~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 456789999999999964
No 246
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=59.39 E-value=15 Score=39.34 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=44.9
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEEC--------CccchHH---HHHHhc-CCCcEEEECchhhHHHHhc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG--------GTRFKVD---QRRLES-DPCQILVATPGRLLDHIEN 524 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~G--------g~~~~~~---~~~l~~-~~~dILIaTPgrLl~lL~~ 524 (633)
++||.++++..+..+...+...... ..+.+..++| +.+.... ...+.. +.++|||||. .+..
T Consensus 391 k~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~~ 464 (555)
T 3tbk_A 391 KTILFVKTRALVDALKKWIEENPAL-SFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VADE 464 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHCGGG-TTCCEEECCC--------------------------CCSEEEECC-----CTTC
T ss_pred eEEEEeCcHHHHHHHHHHHhhCcCc-CceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hhhc
Confidence 5999999999999999888775321 1345555554 4333332 234455 6679999994 2222
Q ss_pred ccCcccccCCeeEEEEecc
Q 006737 525 KSGLSVRLMGLKMLVLDEA 543 (633)
Q Consensus 525 ~~~~~~~Ls~l~~LVIDEA 543 (633)
.+++..+.+||.=+.
T Consensus 465 ----GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 465 ----GIDIAECNLVILYEY 479 (555)
T ss_dssp ----CEETTSCSEEEEESC
T ss_pred ----CCccccCCEEEEeCC
Confidence 478889998886433
No 247
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=59.25 E-value=6 Score=38.81 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=16.2
Q ss_pred hCCCcEEEEccCCCCchhh
Q 006737 414 LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTla 432 (633)
..+..++++|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3567999999999999974
No 248
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=58.97 E-value=5.4 Score=36.93 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.9
Q ss_pred hCCCcEEEEccCCCCchhh
Q 006737 414 LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTla 432 (633)
+.|+-++++||+|+|||..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999983
No 249
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=58.85 E-value=2 Score=46.21 Aligned_cols=70 Identities=24% Similarity=0.313 Sum_probs=0.0
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCccccc
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~L 532 (633)
.++||.|+++.-|..++..+... ++.+..++|+....... ..+..+..+|||||. .+..+ +++
T Consensus 334 ~~~lvF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~~G----lDi 399 (479)
T 3fmp_B 334 AQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDV 399 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEeCcHHHHHHHHHHHHhC-----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccccC----Ccc
Confidence 35899999999999988887765 56778888887654432 344456789999993 34333 677
Q ss_pred CCeeEEE
Q 006737 533 MGLKMLV 539 (633)
Q Consensus 533 s~l~~LV 539 (633)
.++.+||
T Consensus 400 p~v~~VI 406 (479)
T 3fmp_B 400 EQVSVVI 406 (479)
T ss_dssp -------
T ss_pred ccCCEEE
Confidence 7888876
No 250
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=58.46 E-value=12 Score=47.07 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCCchhhhH
Q 006737 415 EGKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlayl 434 (633)
.|+.+++++++|+|||...+
T Consensus 33 ~G~i~lI~G~pGsGKT~LAl 52 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTL 52 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46899999999999997543
No 251
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=58.11 E-value=28 Score=38.15 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=26.9
Q ss_pred cCCeeEEEEecccccCCcC-----hHHHHHHHHHHCCC-CCcEEEEeccC
Q 006737 532 LMGLKMLVLDEADHLLDLG-----FRKDVENIVDCLPR-RRQSLLFSATM 575 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~g-----f~~~l~~Il~~lpk-~~Q~IlfSATl 575 (633)
..+.++|||| -=.-++.. ....+..++..+.. ..-+|+.|-..
T Consensus 369 ~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 369 DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 4567899999 54445666 67777777766643 34444445443
No 252
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=57.87 E-value=14 Score=37.23 Aligned_cols=44 Identities=20% Similarity=0.071 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCCcHHHHH-HHHHHhCCC-----cEEEEccCCCCchhhhH
Q 006737 388 PLTIKALTAAGYIQMTRVQEA-TLSACLEGK-----DAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 388 ~~Ll~~L~~~g~~~pt~iQ~~-aIp~il~gr-----DvLv~ApTGSGKTlayl 434 (633)
..+.+-|..+||. +++.. ++..++.++ .+++.||.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3778888878765 66633 355566653 59999999999998543
No 253
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=57.69 E-value=6.1 Score=41.47 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=23.4
Q ss_pred CeeEEEEecccccCC---cChHHHHHHHHHHCCC
Q 006737 534 GLKMLVLDEADHLLD---LGFRKDVENIVDCLPR 564 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld---~gf~~~l~~Il~~lpk 564 (633)
.-.+|||||||.++. ..+...+..++...++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk 295 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK 295 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh
Confidence 346899999999995 2366777788777765
No 254
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=57.63 E-value=5.1 Score=42.21 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=20.4
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
+..|..++++||||||||.. +-++..++.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl--l~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT--IASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH--HHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH--HHHHHhhcC
Confidence 34577899999999999984 344444443
No 255
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=57.60 E-value=22 Score=39.28 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=51.2
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhc---CCCceEEEEECCccc--hHHHHHHhcCCCc---EEEECchhhHHHHhcccC
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKN---HDGIGVLTLVGGTRF--KVDQRRLESDPCQ---ILVATPGRLLDHIENKSG 527 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~---~~~i~v~~l~Gg~~~--~~~~~~l~~~~~d---ILIaTPgrLl~lL~~~~~ 527 (633)
.++||.|+++.-|..+++.+.+.... ...-.+..++|.... ......+..+..+ |+|+|- ++..
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l~~--- 511 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LLTT--- 511 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TTTT---
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hhhc---
Confidence 47999999999999999998877532 112336667777653 1223444443333 677762 2333
Q ss_pred cccccCCeeEEEEecc
Q 006737 528 LSVRLMGLKMLVLDEA 543 (633)
Q Consensus 528 ~~~~Ls~l~~LVIDEA 543 (633)
.+++..+.+||++..
T Consensus 512 -GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 512 -GVDAPTCKNVVLARV 526 (590)
T ss_dssp -TCCCTTEEEEEEESC
T ss_pred -CccchheeEEEEEec
Confidence 377889999998655
No 256
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=57.37 E-value=12 Score=45.99 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=30.7
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
+++-++||+|||-.-+|..-...+...+..+.+++-+|+.+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 45667899999998888877778888887776666444443
No 257
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=57.25 E-value=6.8 Score=38.21 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=28.1
Q ss_pred cCccccCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 379 KRFDECGISPLTIKALTAAG--YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g--~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
.+|+++.-.+.+.+.|...- +..+..++... +...+.++++||+|+|||..
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHH
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHH
Confidence 46888876676666665420 00000000000 11235799999999999974
No 258
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=55.76 E-value=6.4 Score=41.36 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=15.7
Q ss_pred hCCCcEEEEccCCCCchhh
Q 006737 414 LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTla 432 (633)
..+.-++++||||||||..
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3455789999999999984
No 259
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=55.61 E-value=6.6 Score=36.55 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=15.9
Q ss_pred hCCCcEEEEccCCCCchhh
Q 006737 414 LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTla 432 (633)
..|.-+.+.||+|||||..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 3567788999999999984
No 260
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=54.91 E-value=6.3 Score=41.61 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=19.7
Q ss_pred HHHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 408 ATLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 408 ~aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
.++..++.|.| +++.|+||||||...
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 35566778875 677899999999753
No 261
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=54.47 E-value=30 Score=35.17 Aligned_cols=45 Identities=7% Similarity=0.118 Sum_probs=27.9
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
....+++||||||.|... -.+.+.++++.-|... +++|.++-+..
T Consensus 80 ~~~~kvviIdead~lt~~-a~naLLk~LEep~~~t-~fIl~t~~~~k 124 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYA-VIVLNTRRWHY 124 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTE-EEEEEESCGGG
T ss_pred cCCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCe-EEEEEECChHh
Confidence 456789999999998743 2344556666554444 44444454444
No 262
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=53.76 E-value=13 Score=37.96 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
++.+++.||+|+|||.+.
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 468999999999999843
No 263
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=53.68 E-value=6 Score=40.19 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=18.9
Q ss_pred HHHHHhCCCcEEEEccCCCCchhh
Q 006737 409 TLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 409 aIp~il~grDvLv~ApTGSGKTla 432 (633)
++-.+..+.++++.||+|+|||..
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHH
Confidence 334455678999999999999973
No 264
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=53.62 E-value=5.6 Score=38.74 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=29.4
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il--~grDvLv~ApTGSGKTla 432 (633)
..+|+++.-.+.+...+.+.-.. + -...++..+- -.+.+++.+|+|+|||..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~-~--~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH-H--HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH-H--HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 35688887666666666543110 0 0012222211 123599999999999973
No 265
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=52.88 E-value=7.4 Score=40.47 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4555677875 677899999999853
No 266
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=52.33 E-value=16 Score=44.27 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=42.2
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHHHhcCC-CCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHh
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSS-STTQLVPPIYVLILCPTRELASQIAAEAIALLK 480 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~~~~~~-~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~ 480 (633)
..+|.|.-|||||.+-.-=++..|...+.. ........-++|+|+=|+..|.++.+++...+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 459999999999987555455555432100 000112234699999999999999988877653
No 267
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.18 E-value=14 Score=36.02 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCC----CcEEEEccCCCCchhh
Q 006737 388 PLTIKALTAAGYIQMTRVQEATLSACLEG----KDAVVKAKTGTGKSIA 432 (633)
Q Consensus 388 ~~Ll~~L~~~g~~~pt~iQ~~aIp~il~g----rDvLv~ApTGSGKTla 432 (633)
..|.+-|.-.|+. +... ..++..++.+ +.+++.+|.|+|||..
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYF 74 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHH
Confidence 3566666655542 3333 3444445444 3599999999999974
No 268
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=52.07 E-value=4 Score=41.02 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=26.3
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--hCCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQ-EATLSAC--LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ-~~aIp~i--l~grDvLv~ApTGSGKTla 432 (633)
..+|++++--+.+.+.|...= ..|+. ..++..+ .-.+.+++.||+|+|||+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 356888877677777666521 11111 1222221 1123499999999999983
No 269
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=51.67 E-value=9 Score=36.81 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=16.0
Q ss_pred hCCCcEEEEccCCCCchhh
Q 006737 414 LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTla 432 (633)
..|+-+.++||+|+|||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678899999999999983
No 270
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=51.33 E-value=6 Score=40.94 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCchHHHHHHHHhhcccCcccccCCCCCCC
Q 006737 46 MHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLFDKADPDSETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPV 123 (633)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (633)
|-|+|.+++.+.-+.+|+.|..+-..+--+ ..+..|..-+..++..|+.-...+++
T Consensus 1 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~----------------------~~~~~l~~~l~d~~v~dI~in~~~~v 56 (330)
T 2pt7_A 1 MTEDRLSAEDKKFLEVERALKEAALNPLRH----------------------ATEELFGDFLKMENITEICYNGNKVV 56 (330)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHTSSSEEEEEECSSSEE
T ss_pred CchhhhhhcchhHHHHHHHHHHHHHHHHHH----------------------hCccchHHHhcCCCCeEEEEcCCCEE
Confidence 667888888888888888777666543311 12344444455677888776666555
No 271
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=50.79 E-value=9.5 Score=35.75 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.++.++++|++|||||...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5678999999999999853
No 272
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=50.76 E-value=8.3 Score=40.15 Aligned_cols=26 Identities=27% Similarity=0.639 Sum_probs=19.9
Q ss_pred HHHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 408 ATLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 408 ~aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
..+..++.|.| +++.++||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35666778875 677899999999753
No 273
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.68 E-value=8.1 Score=41.38 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=20.0
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5677788876 577899999999864
No 274
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=50.59 E-value=8.3 Score=40.75 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=18.7
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4555677775 677899999999753
No 275
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=50.58 E-value=8.4 Score=41.42 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=18.8
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4555677775 677899999999753
No 276
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=50.57 E-value=14 Score=40.90 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCCchhhhH
Q 006737 416 GKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 416 grDvLv~ApTGSGKTlayl 434 (633)
+.+++|.+.||||||.+..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp SCSEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999998643
No 277
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=50.51 E-value=7.7 Score=40.67 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=18.7
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4455667775 577899999999863
No 278
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=50.42 E-value=8.4 Score=40.47 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=18.7
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4455667775 677899999999863
No 279
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=50.38 E-value=8.4 Score=40.41 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=20.4
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.++||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 6777888886 567899999999864
No 280
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=50.35 E-value=8.2 Score=40.60 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=19.7
Q ss_pred HHHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 408 ATLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 408 ~aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
.++..++.|.| +++.|+||||||...
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 34566778876 577899999999863
No 281
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=50.21 E-value=8.3 Score=40.91 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=18.9
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4555677775 567899999999753
No 282
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=50.19 E-value=8.4 Score=40.53 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=18.8
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 3455677775 677899999999753
No 283
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=50.14 E-value=8.3 Score=40.48 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=18.9
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4555677775 677899999999764
No 284
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=49.99 E-value=9.2 Score=37.10 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=16.3
Q ss_pred HHhCCCcEEEEccCCCCchhh
Q 006737 412 ACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 412 ~il~grDvLv~ApTGSGKTla 432 (633)
++..|+-++++||+|+|||..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHH
Confidence 355788899999999999984
No 285
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=49.89 E-value=8.6 Score=40.47 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4556678875 677899999999853
No 286
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=49.88 E-value=8.4 Score=40.60 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=19.1
Q ss_pred HHHHHHhCCCc--EEEEccCCCCchhh
Q 006737 408 ATLSACLEGKD--AVVKAKTGTGKSIA 432 (633)
Q Consensus 408 ~aIp~il~grD--vLv~ApTGSGKTla 432 (633)
.++..++.|.| +++.++||||||..
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceE
Confidence 34556678875 56779999999975
No 287
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=49.80 E-value=9.1 Score=40.44 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=18.9
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4455677775 677899999999863
No 288
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=49.73 E-value=9.1 Score=40.05 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.++||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4556677875 577899999999763
No 289
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=49.73 E-value=8 Score=40.75 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=19.1
Q ss_pred HHHHHHhCCCc--EEEEccCCCCchhh
Q 006737 408 ATLSACLEGKD--AVVKAKTGTGKSIA 432 (633)
Q Consensus 408 ~aIp~il~grD--vLv~ApTGSGKTla 432 (633)
.++..++.|.| +++.|+||||||..
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceE
Confidence 34556678875 67789999999975
No 290
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=49.51 E-value=6.1 Score=37.29 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=17.2
Q ss_pred HHhCCCcEEEEccCCCCchhh
Q 006737 412 ACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 412 ~il~grDvLv~ApTGSGKTla 432 (633)
++..|+-++++||+|||||..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHH
T ss_pred ccccCCEEEEECCCCCCHHHH
Confidence 345678899999999999984
No 291
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=49.35 E-value=5.1 Score=36.76 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=16.8
Q ss_pred hCCCcEEEEccCCCCchhhh
Q 006737 414 LEGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlay 433 (633)
..++.++++|++|||||...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 45678999999999999843
No 292
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=48.94 E-value=10 Score=35.88 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=19.5
Q ss_pred HHhCCCcEEEEccCCCCchhhhHHHHHHHHH
Q 006737 412 ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (633)
Q Consensus 412 ~il~grDvLv~ApTGSGKTlaylLPiL~~l~ 442 (633)
.+..|.-+.+.+|+|+|||.. +-++..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL--l~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV--VRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH--HHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 456788899999999999983 34444443
No 293
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=48.85 E-value=3.6 Score=42.22 Aligned_cols=70 Identities=13% Similarity=0.254 Sum_probs=0.0
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---HHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---RRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.+++++-+..+++.+... ++.+..++|+....... ..+..+..+|||+|. .+..+ +++.
T Consensus 261 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----ldi~ 326 (394)
T 1fuu_A 261 QAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDVQ 326 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEECCHHHHHHHHHHHHHc-----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----hhhcC----CCcc
Confidence 5899999999999888777654 56677888876544332 333455678999994 33333 6677
Q ss_pred CeeEEEE
Q 006737 534 GLKMLVL 540 (633)
Q Consensus 534 ~l~~LVI 540 (633)
.+++||.
T Consensus 327 ~~~~Vi~ 333 (394)
T 1fuu_A 327 QVSLVIN 333 (394)
T ss_dssp -------
T ss_pred cCCEEEE
Confidence 7777765
No 294
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=48.79 E-value=9.8 Score=38.66 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
....++++|+||+|||++
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 456899999999999974
No 295
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=48.76 E-value=11 Score=35.72 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=19.0
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
.|.-+.|.||+|||||. ++-+|..++.
T Consensus 21 ~g~~v~I~G~sGsGKST--l~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKST--LSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHH--HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHH--HHHHHHHHHh
Confidence 35567899999999998 3444544444
No 296
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=48.72 E-value=1.6e+02 Score=27.04 Aligned_cols=133 Identities=10% Similarity=0.027 Sum_probs=47.8
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHHHhcC--CCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEE
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATS--SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~~~~~--~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~ 491 (633)
+.|-.+-+.+..|-|=|+.+.+|+...-..... ........+.++|||-........+...+... ++.
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~-----g~~----- 87 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM-----GVS----- 87 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT-----TCS-----
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc-----CCC-----
Confidence 345577788889999999999997432211110 11112234567888887766665554444433 220
Q ss_pred CCccchHHHHHHhcCCCcEEEE-CchhhHHHHhcccC-----cccccCCeeEEEEecccccCCcChHHHHHHHHHH---C
Q 006737 492 GGTRFKVDQRRLESDPCQILVA-TPGRLLDHIENKSG-----LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDC---L 562 (633)
Q Consensus 492 Gg~~~~~~~~~l~~~~~dILIa-TPgrLl~lL~~~~~-----~~~~Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~---l 562 (633)
.|..+ +....+.++..... ....-..+++||+|= .|.+..-...+..|... .
T Consensus 88 -----------------~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~ 148 (206)
T 3mm4_A 88 -----------------EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSY 148 (206)
T ss_dssp -----------------EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTT
T ss_pred -----------------eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhc
Confidence 22222 23333444432100 000112567899983 23333333444444443 3
Q ss_pred CCCCcEEEEeccC
Q 006737 563 PRRRQSLLFSATM 575 (633)
Q Consensus 563 pk~~Q~IlfSATl 575 (633)
....++|++|+..
T Consensus 149 ~~~~piI~ls~~~ 161 (206)
T 3mm4_A 149 GVRTPIIAVSGHD 161 (206)
T ss_dssp TCCCCEEEEESSC
T ss_pred CCCCcEEEEECCC
Confidence 4678899999986
No 297
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=48.29 E-value=7.9 Score=41.01 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=19.5
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5666778875 567899999999764
No 298
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=47.98 E-value=10 Score=34.19 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
+..++++|+.|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56789999999999984
No 299
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=47.89 E-value=7.9 Score=40.60 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5666778876 577899999999864
No 300
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=47.82 E-value=7.7 Score=36.07 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=16.1
Q ss_pred hCCCcEEEEccCCCCchhh
Q 006737 414 LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTla 432 (633)
..|.-++++|++|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4577789999999999984
No 301
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=47.71 E-value=8.5 Score=40.77 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=18.6
Q ss_pred HHHHHHhCCCc--EEEEccCCCCchhh
Q 006737 408 ATLSACLEGKD--AVVKAKTGTGKSIA 432 (633)
Q Consensus 408 ~aIp~il~grD--vLv~ApTGSGKTla 432 (633)
.++..++.|.| +++.++||||||..
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCccee
Confidence 34455667775 67789999999975
No 302
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=47.60 E-value=11 Score=34.87 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=16.4
Q ss_pred CcEEEEccCCCCchhhhHHHHHHHH
Q 006737 417 KDAVVKAKTGTGKSIAFLLPAIEAV 441 (633)
Q Consensus 417 rDvLv~ApTGSGKTlaylLPiL~~l 441 (633)
+-+.+.||+|+|||.. +-+|..+
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHHHH
T ss_pred CEEEEECCCCCCHHHH--HHHHHhh
Confidence 4578999999999983 3444333
No 303
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=47.49 E-value=5.7 Score=43.32 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=46.1
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchH---HHHHHhcCCCcEEEECchhhHHHHhcccCcccccC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV---DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~---~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls 533 (633)
++||.++++.-|..++..+... ++.+.+++|+..... ....+..+..+|||||. .+..+ +++.
T Consensus 359 ~~LVF~~s~~~a~~l~~~L~~~-----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~~G----iDip 424 (508)
T 3fho_A 359 QSIIFCKKKDTAEEIARRMTAD-----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIARG----IDVS 424 (508)
T ss_dssp CEEEBCSSTTTTTHHHHHHTTT-----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC--------------CCCT
T ss_pred cEEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhhcC----CCcc
Confidence 5999999999998887766543 667788888765432 23455667789999995 34433 7788
Q ss_pred CeeEEEEe
Q 006737 534 GLKMLVLD 541 (633)
Q Consensus 534 ~l~~LVID 541 (633)
++++||..
T Consensus 425 ~v~~VI~~ 432 (508)
T 3fho_A 425 QVNLVVNY 432 (508)
T ss_dssp TCCEEEC-
T ss_pred CCCEEEEE
Confidence 89888853
No 304
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.36 E-value=9.4 Score=41.03 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=20.2
Q ss_pred HHHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 408 ATLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 408 ~aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
.++..++.|.| +++.|+||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35677788875 577799999999863
No 305
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=47.29 E-value=6.6 Score=38.45 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
.+.++++||+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 45699999999999974
No 306
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=47.14 E-value=9.1 Score=36.32 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.|+-++++||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466788999999999984
No 307
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=47.13 E-value=6.8 Score=34.91 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.1
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
-++++|++|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999984
No 308
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=47.09 E-value=4.9 Score=45.29 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=36.7
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcC-CCceEEEEECC--------ccchHHH---HHHhcCCCcEEEECc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLVGG--------TRFKVDQ---RRLESDPCQILVATP 515 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~-~~i~v~~l~Gg--------~~~~~~~---~~l~~~~~dILIaTP 515 (633)
++||.++++..+..+.+.+....... .++.+..++|+ ....... ..+..+..+|||||.
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~ 472 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT 472 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC
T ss_pred cEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc
Confidence 59999999999999888776531110 15778888888 5544333 445556778999983
No 309
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=47.06 E-value=10 Score=40.46 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.|+||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4556677775 677899999999864
No 310
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=47.04 E-value=10 Score=41.21 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=19.5
Q ss_pred HHHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 408 ATLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 408 ~aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
.++..++.|.| +++.|+||||||...
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34556677875 677899999999764
No 311
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=46.91 E-value=44 Score=40.07 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=28.3
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHh-------cCCCceEEEEEC
Q 006737 455 PIYVLILCPTRELASQIAAEAIALLK-------NHDGIGVLTLVG 492 (633)
Q Consensus 455 ~~~vLILvPTReLa~Qi~~~l~~l~~-------~~~~i~v~~l~G 492 (633)
+.++||+|.+++-|..+++.+.++.. ....+++.+++.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s 581 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFS 581 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEe
Confidence 45799999999999999999988862 122456655544
No 312
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=46.90 E-value=7.3 Score=35.73 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
.+.++++|++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467999999999999853
No 313
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=46.78 E-value=7.6 Score=38.51 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=29.9
Q ss_pred ccCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEccCCCCchhh
Q 006737 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 378 ~~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il--~grDvLv~ApTGSGKTla 432 (633)
..+|+++.-.+.+...+...-.. + -...++..+- -.+.+++++|+|+|||..
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~-~--~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH-H--HCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH-H--HCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 45688887777776666553110 0 0011222211 123499999999999973
No 314
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=46.24 E-value=8.4 Score=41.10 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=18.2
Q ss_pred HHHHhCCCc--EEEEccCCCCchhhh
Q 006737 410 LSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 410 Ip~il~grD--vLv~ApTGSGKTlay 433 (633)
+..++.|.| +++.|+||||||...
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 345677775 667899999999764
No 315
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=46.15 E-value=6.6 Score=36.15 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.6
Q ss_pred HhCCCcEEEEccCCCCchhh
Q 006737 413 CLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTla 432 (633)
+..|.-++++|++|||||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34577889999999999983
No 316
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=45.63 E-value=7.9 Score=35.17 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
++-++++|+.|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999853
No 317
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.49 E-value=14 Score=49.28 Aligned_cols=49 Identities=10% Similarity=0.094 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHH---HHHhCCCcEEEEccCCCCchhhhH
Q 006737 386 ISPLTIKALTAAGYIQMTRVQEATL---SACLEGKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 386 L~~~Ll~~L~~~g~~~pt~iQ~~aI---p~il~grDvLv~ApTGSGKTlayl 434 (633)
|...+.+.+.+.|+..-..+-.+++ ..+....-++++||||||||.|+-
T Consensus 873 l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 4566777777888854433334444 345556789999999999999764
No 318
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=45.36 E-value=9.4 Score=40.52 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEccCCCCchhhh
Q 006737 409 TLSACLEGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 409 aIp~il~grD--vLv~ApTGSGKTlay 433 (633)
++..++.|.| +++.++||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5677788875 677899999999753
No 319
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=45.22 E-value=89 Score=31.52 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
++-+++++++|+|||...
T Consensus 98 ~~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp SEEEEEECSSCSSTTHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456778899999999753
No 320
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=45.21 E-value=38 Score=38.27 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=51.0
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhc--C-----------------------------CCceEEEEECCccchHHH---HH
Q 006737 457 YVLILCPTRELASQIAAEAIALLKN--H-----------------------------DGIGVLTLVGGTRFKVDQ---RR 502 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~--~-----------------------------~~i~v~~l~Gg~~~~~~~---~~ 502 (633)
++||.+|++.-+..++..+...+.. . ....+..++|+.....+. ..
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 4999999999999988888764321 0 012478899998765543 23
Q ss_pred HhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEEE
Q 006737 503 LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540 (633)
Q Consensus 503 l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVI 540 (633)
+..+..+|||||. .+.. .+++..+.+||-
T Consensus 334 f~~g~~~vlvaT~-----~l~~----Gidip~~~~VI~ 362 (715)
T 2va8_A 334 FRQRKIKVIVATP-----TLAA----GVNLPARTVIIG 362 (715)
T ss_dssp HHTTCSCEEEECG-----GGGG----SSCCCBSEEEEC
T ss_pred HHcCCCeEEEECh-----HHhc----ccCCCceEEEEe
Confidence 4457789999993 2233 367778877553
No 321
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=45.12 E-value=7.7 Score=40.26 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
-++|+||||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999743
No 322
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=44.99 E-value=7.7 Score=40.35 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
+-++|+||||+|||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34788999999999743
No 323
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=44.97 E-value=91 Score=33.36 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=13.9
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
+.+++++++|+|||...
T Consensus 101 ~vI~ivG~~GvGKTT~a 117 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSV 117 (433)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36778899999999853
No 324
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=44.93 E-value=19 Score=40.39 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCCchhhhHHHHHH
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIE 439 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~ 439 (633)
..+++|.+.||||||.+...-++.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999864433333
No 325
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=44.79 E-value=12 Score=38.51 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=20.3
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHH
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~ 442 (633)
-.|.-+.+++|+|+|||. ++-+|..++
T Consensus 124 ~~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 457889999999999998 444555454
No 326
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=44.68 E-value=70 Score=32.56 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
++-+++++++|+|||..
T Consensus 104 ~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 45678999999999974
No 327
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=44.63 E-value=30 Score=39.29 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=51.8
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcC----------------------------CCceEEEEECCccchHHH---HHHhc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNH----------------------------DGIGVLTLVGGTRFKVDQ---RRLES 505 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~----------------------------~~i~v~~l~Gg~~~~~~~---~~l~~ 505 (633)
++||.+|++.-|..++..+.+.+... ....+..++|+.....+. ..+..
T Consensus 239 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 318 (720)
T 2zj8_A 239 GALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318 (720)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHC
Confidence 49999999999999988887653210 012478889988766543 34456
Q ss_pred CCCcEEEECchhhHHHHhcccCcccccCCeeEEEEecc
Q 006737 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543 (633)
Q Consensus 506 ~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEA 543 (633)
+..+|||||. .+.. .+++..+.+ |||..
T Consensus 319 g~~~vlvaT~-----~l~~----Gvdip~~~~-VI~~~ 346 (720)
T 2zj8_A 319 GIIKAVVATP-----TLSA----GINTPAFRV-IIRDI 346 (720)
T ss_dssp TSSCEEEECS-----TTGG----GCCCCBSEE-EECCS
T ss_pred CCCeEEEECc-----Hhhc----cCCCCceEE-EEcCC
Confidence 7789999994 2222 366777765 55543
No 328
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=44.57 E-value=7.7 Score=38.31 Aligned_cols=16 Identities=19% Similarity=0.094 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
-++++||||||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999743
No 329
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=44.23 E-value=21 Score=36.39 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=19.7
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHHh
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~~ 444 (633)
+.-+.+.+|+|+|||. ++-++..++..
T Consensus 102 g~vi~lvG~nGsGKTT--ll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTT--TIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHH--HHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHH--HHHHHHHHHHh
Confidence 5678889999999998 44555555543
No 330
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=44.15 E-value=9.5 Score=39.94 Aligned_cols=18 Identities=44% Similarity=0.340 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
++-++|+||||+|||...
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999743
No 331
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=43.08 E-value=7 Score=35.94 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCCchhhhH
Q 006737 415 EGKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlayl 434 (633)
.|.-+.++||+|||||...-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46668899999999998543
No 332
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=42.98 E-value=12 Score=39.51 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.3
Q ss_pred CCCc--EEEEccCCCCchhhh
Q 006737 415 EGKD--AVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grD--vLv~ApTGSGKTlay 433 (633)
.|.+ +++.|+||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4766 688999999999753
No 333
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=42.96 E-value=15 Score=34.39 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.|.-++++|+.|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467899999999999984
No 334
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=42.92 E-value=11 Score=40.77 Aligned_cols=77 Identities=18% Similarity=0.193 Sum_probs=33.9
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEE--------ECCccchHH---HHHHhc-CCCcEEEECchhhHHHHhc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTL--------VGGTRFKVD---QRRLES-DPCQILVATPGRLLDHIEN 524 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l--------~Gg~~~~~~---~~~l~~-~~~dILIaTPgrLl~lL~~ 524 (633)
++||.++++..+..+.+.+..... ..++++..+ +|+...... ...+.. +.++|||||. .+..
T Consensus 392 k~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~~ 465 (556)
T 4a2p_A 392 RTLLFAKTRALVSALKKCMEENPI-LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VADE 465 (556)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCSG-GGSCCEEC------------------------------CCEEEEEC---------
T ss_pred eEEEEEccHHHHHHHHHHHHhCCC-cceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----chhc
Confidence 699999999999998877765311 112333333 344443332 234445 6679999993 2333
Q ss_pred ccCcccccCCeeEEEEecc
Q 006737 525 KSGLSVRLMGLKMLVLDEA 543 (633)
Q Consensus 525 ~~~~~~~Ls~l~~LVIDEA 543 (633)
+ +++..+++||.=+.
T Consensus 466 G----iDip~v~~VI~~d~ 480 (556)
T 4a2p_A 466 G----IDIVQCNLVVLYEY 480 (556)
T ss_dssp -----------CEEEEETC
T ss_pred C----CCchhCCEEEEeCC
Confidence 3 77888998886443
No 335
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=42.78 E-value=11 Score=34.31 Aligned_cols=23 Identities=35% Similarity=0.267 Sum_probs=16.3
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHH
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVL 442 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~ 442 (633)
-.++++++|+|||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 468899999999984 34444443
No 336
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=42.50 E-value=18 Score=43.76 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=54.7
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEE-EEECCccchHHHHHHhcCCCcEEEE----CchhhHHHHhcccCcccc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVL-TLVGGTRFKVDQRRLESDPCQILVA----TPGRLLDHIENKSGLSVR 531 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~-~l~Gg~~~~~~~~~l~~~~~dILIa----TPgrLl~lL~~~~~~~~~ 531 (633)
++||.++++.-|..++..+... ++.+. .++|. ... ...+..+..+|||| | +.+..+ ++
T Consensus 311 ~~LVF~~s~~~a~~l~~~L~~~-----g~~~~~~lhg~--rr~-l~~F~~G~~~VLVatas~T-----dvlarG----ID 373 (1104)
T 4ddu_A 311 GILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYY-----GKLTRG----VD 373 (1104)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT-----TCCEEESSSSH--HHH-HHHHHHTSCSEEEEETTTH-----HHHCCS----CC
T ss_pred CEEEEECcHHHHHHHHHHHHhC-----CCCeeeEecCc--HHH-HHHHHCCCCCEEEEecCCC-----CeeEec----Cc
Confidence 4899999999999998888764 66776 66663 233 66777788999999 6 344444 78
Q ss_pred cCC-eeEEEEecccc
Q 006737 532 LMG-LKMLVLDEADH 545 (633)
Q Consensus 532 Ls~-l~~LVIDEAD~ 545 (633)
+.+ |++||.=.+-.
T Consensus 374 ip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 374 LPERIKYVIFWGTPS 388 (1104)
T ss_dssp CTTTCCEEEEESCCE
T ss_pred CCCCCCEEEEECCCC
Confidence 889 99998877665
No 337
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=42.28 E-value=14 Score=37.37 Aligned_cols=17 Identities=41% Similarity=0.397 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
...++++||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 44799999999999974
No 338
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=41.65 E-value=9.3 Score=36.33 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.7
Q ss_pred CcEEEEccCCCCchhh
Q 006737 417 KDAVVKAKTGTGKSIA 432 (633)
Q Consensus 417 rDvLv~ApTGSGKTla 432 (633)
|=++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3489999999999983
No 339
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=41.60 E-value=12 Score=35.87 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.3
Q ss_pred hCCCcEEEEccCCCCchhh
Q 006737 414 LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTla 432 (633)
+.|+-++++||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3677889999999999983
No 340
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=41.38 E-value=22 Score=36.20 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=20.0
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHh
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~ 444 (633)
.|.-+.+.+|+|+|||. ++-.+..++..
T Consensus 99 ~g~vi~lvG~nGsGKTT--ll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTT--SLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHH--HHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHH--HHHHHHHHHHH
Confidence 45678899999999998 44445555543
No 341
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=41.38 E-value=15 Score=34.25 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=23.1
Q ss_pred cCCeeEEEEecccc--cCCcChHHHHHHHHHHCCCCCcEEEEec
Q 006737 532 LMGLKMLVLDEADH--LLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (633)
Q Consensus 532 Ls~l~~LVIDEAD~--Lld~gf~~~l~~Il~~lpk~~Q~IlfSA 573 (633)
+.+-+++|+||++- .++..+...+..++.. ...+++++.
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~ 137 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATI 137 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEEC
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEE
Confidence 34667999999653 3455466666666544 333344444
No 342
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=41.23 E-value=19 Score=35.90 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
...++++||+|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36899999999999974
No 343
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=41.22 E-value=59 Score=38.04 Aligned_cols=53 Identities=21% Similarity=0.071 Sum_probs=37.0
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcC-CCcEEEECc
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESD-PCQILVATP 515 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~-~~dILIaTP 515 (633)
+||.+.|++-+..+...+... ++.+.+++|+............+ ...|+|||.
T Consensus 435 vLVft~s~~~se~Ls~~L~~~-----gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATd 488 (844)
T 1tf5_A 435 VLVGTVAVETSELISKLLKNK-----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN 488 (844)
T ss_dssp EEEEESCHHHHHHHHHHHHTT-----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCC
Confidence 899999999999887776654 78888999986533322111222 347999993
No 344
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=40.97 E-value=26 Score=33.00 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=22.2
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCCchhhh
Q 006737 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 402 pt~iQ~~aIp~il~grDvLv~ApTGSGKTlay 433 (633)
.++.+... ..+..|.-++++|+.|||||...
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 34555555 33556778999999999999843
No 345
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=40.80 E-value=11 Score=36.07 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=12.0
Q ss_pred hCCCcEEEEccCCCCchhh
Q 006737 414 LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTla 432 (633)
..|.-+.+.||+|+|||..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567788999999999984
No 346
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=40.71 E-value=15 Score=33.24 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
|.-++++|+.|||||..
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 55789999999999984
No 347
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=40.69 E-value=63 Score=32.07 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=59.1
Q ss_pred CCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHH---H
Q 006737 425 TGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ---R 501 (633)
Q Consensus 425 TGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~---~ 501 (633)
..+||..+ ++-++..+.... -++||.+.++..+..+...+.... ++.+..++|+.+..... .
T Consensus 93 ~~s~K~~~-L~~ll~~~~~~~----------~kvlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i~ 157 (271)
T 1z5z_A 93 RRSGKMIR-TMEIIEEALDEG----------DKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIIS 157 (271)
T ss_dssp TTCHHHHH-HHHHHHHHHHTT----------CCEEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHHH
T ss_pred ccCHHHHH-HHHHHHHHHhCC----------CeEEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHH
Confidence 45777653 444555543322 259999999999888887776643 56677889988755433 2
Q ss_pred HHhcC-CCc-EEEECchhhHHHHhcccCcccccCCeeEEEEeccc
Q 006737 502 RLESD-PCQ-ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544 (633)
Q Consensus 502 ~l~~~-~~d-ILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVIDEAD 544 (633)
.+..+ .+. ||++|- .. +..+++..+.+||+=+..
T Consensus 158 ~F~~~~~~~v~L~st~-~~--------g~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 158 KFQNNPSVKFIVLSVK-AG--------GFGINLTSANRVIHFDRW 193 (271)
T ss_dssp HHHHCTTCCEEEEECC-TT--------CCCCCCTTCSEEEECSCC
T ss_pred HhcCCCCCCEEEEehh-hh--------cCCcCcccCCEEEEECCC
Confidence 33334 456 455552 21 224677888888764443
No 348
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=40.58 E-value=9.1 Score=38.60 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCchhh
Q 006737 417 KDAVVKAKTGTGKSIA 432 (633)
Q Consensus 417 rDvLv~ApTGSGKTla 432 (633)
+.++++||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999974
No 349
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=40.55 E-value=70 Score=35.11 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
.+++++++|+|||...
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6888999999999853
No 350
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=40.45 E-value=25 Score=46.37 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHH-HHHH---HHHhCCCcEEEEccCCCCchhhhH
Q 006737 386 ISPLTIKALTAAGYIQMTRVQ-EATL---SACLEGKDAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 386 L~~~Ll~~L~~~g~~~pt~iQ-~~aI---p~il~grDvLv~ApTGSGKTlayl 434 (633)
+...+.+.+.+.|+. +++.+ .+++ ..+...+-++++||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 345667777777775 44444 3333 445567789999999999999764
No 351
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=40.40 E-value=16 Score=32.89 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=16.3
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHH
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVL 442 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~ 442 (633)
-.+|++|+|+|||.. +-++..++
T Consensus 25 ~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHH
Confidence 368899999999984 44444443
No 352
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=40.36 E-value=10 Score=34.51 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
+.-++++|+.|||||..
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999984
No 353
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=40.35 E-value=7.7 Score=40.08 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q 006737 98 EHVKALADRF 107 (633)
Q Consensus 98 ~~~~~~~~~~ 107 (633)
..+.+||.-|
T Consensus 174 ~~~~~l~~~l 183 (386)
T 2ca6_A 174 GSMKEWAKTF 183 (386)
T ss_dssp GGHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 354
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=40.31 E-value=20 Score=40.20 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=39.9
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEEC--------CccchHHH---HHHhc-CCCcEEEECchhhHHHHhc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG--------GTRFKVDQ---RRLES-DPCQILVATPGRLLDHIEN 524 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~G--------g~~~~~~~---~~l~~-~~~dILIaTPgrLl~lL~~ 524 (633)
++||.++++..|..+++.+..... ...+.+..++| +.....+. ..+.. +..+|||||- .+..
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~-~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~~~ 473 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPK-LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VADE 473 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTT-CCSCCEEC-----------------------------CCSCSEEEE-----SSCC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCC-ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hhhc
Confidence 599999999999999888876521 12367777755 54433332 33444 6678999993 1222
Q ss_pred ccCcccccCCeeEEEEecc
Q 006737 525 KSGLSVRLMGLKMLVLDEA 543 (633)
Q Consensus 525 ~~~~~~~Ls~l~~LVIDEA 543 (633)
.+++.++.+||.=..
T Consensus 474 ----GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 474 ----GIDIAQCNLVILYEY 488 (696)
T ss_dssp ----C---CCCSEEEEESC
T ss_pred ----CCcCccCCEEEEeCC
Confidence 366777777775433
No 355
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=40.30 E-value=23 Score=40.85 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=35.5
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhc-------CCCceEEEEECCccchHH---HHHHhc-CCCcEEEECchhhHHHHhcc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKN-------HDGIGVLTLVGGTRFKVD---QRRLES-DPCQILVATPGRLLDHIENK 525 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~-------~~~i~v~~l~Gg~~~~~~---~~~l~~-~~~dILIaTPgrLl~lL~~~ 525 (633)
++||.++++..+..+...+...... ..+..+..++|+...... ...+.. +.++|||||- .+..
T Consensus 633 kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~~~~- 706 (797)
T 4a2q_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VADE- 706 (797)
T ss_dssp CEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC-----C----
T ss_pred eEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----chhc-
Confidence 6999999999999988887653110 012233334444444332 234455 6679999993 2222
Q ss_pred cCcccccCCeeEEEEecc
Q 006737 526 SGLSVRLMGLKMLVLDEA 543 (633)
Q Consensus 526 ~~~~~~Ls~l~~LVIDEA 543 (633)
.+++..+.+||.=+.
T Consensus 707 ---GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 707 ---GIDIVQCNLVVLYEY 721 (797)
T ss_dssp -------CCCSEEEEESC
T ss_pred ---CCCchhCCEEEEeCC
Confidence 377888998886443
No 356
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=40.07 E-value=11 Score=36.66 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
++-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 56789999999999863
No 357
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=40.00 E-value=12 Score=36.60 Aligned_cols=44 Identities=9% Similarity=0.144 Sum_probs=31.5
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCC-CcEEEEeccC
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR-RQSLLFSATM 575 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~-~Q~IlfSATl 575 (633)
+.+-++||+||--.-+|......+..++..+... -.+|+++.--
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 4567899999999999887788888887766432 3355554443
No 358
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=39.84 E-value=19 Score=34.03 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=28.3
Q ss_pred cCCeeEEEEeccccc--CCcChHHHHHHHHHHCCCCCcEEEEeccCCh
Q 006737 532 LMGLKMLVLDEADHL--LDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577 (633)
Q Consensus 532 Ls~l~~LVIDEAD~L--ld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~ 577 (633)
+...++|||||+..+ .+..|...+..++.. ...+|+-++|++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vsh 147 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVPK 147 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecCC
Confidence 456789999998877 344477777777763 2234444777653
No 359
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=39.81 E-value=10 Score=33.89 Aligned_cols=15 Identities=13% Similarity=-0.033 Sum_probs=13.1
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
-++++|+.|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999984
No 360
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=39.76 E-value=30 Score=34.25 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
..+++.||+|+|||.+.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999753
No 361
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=39.72 E-value=50 Score=40.64 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=30.0
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEe
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
+++-+++|+||+=.-+|..-...+...+..+.+++-+|+.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 56678899999998888777777777777665555444444
No 362
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=39.61 E-value=11 Score=34.12 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=13.1
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
-++++|++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478999999999984
No 363
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=39.26 E-value=20 Score=42.69 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=54.1
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHH---HHHHhcCC--CcEEEECchhhHHHHhcccCcccc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD---QRRLESDP--CQILVATPGRLLDHIENKSGLSVR 531 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~---~~~l~~~~--~dILIaTPgrLl~lL~~~~~~~~~ 531 (633)
++||.++++.-+..+...+... .++.+..++|+.+.... ...+..+. ++|||||. . +.. .++
T Consensus 505 k~iVF~~~~~~~~~l~~~L~~~----~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-v----~~~----GlD 571 (968)
T 3dmq_A 505 KVLVICAKAATALQLEQVLRER----EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-I----GSE----GRN 571 (968)
T ss_dssp CCCEECSSTHHHHHHHHHHHTT----TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-C----TTC----SSC
T ss_pred CEEEEeCcHHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-h----hhc----CCC
Confidence 5899999999998887776642 27889999999775543 24455555 89999992 2 222 377
Q ss_pred cCCeeEEEEeccc
Q 006737 532 LMGLKMLVLDEAD 544 (633)
Q Consensus 532 Ls~l~~LVIDEAD 544 (633)
+..+.+||+-+.+
T Consensus 572 l~~~~~VI~~d~p 584 (968)
T 3dmq_A 572 FQFASHMVMFDLP 584 (968)
T ss_dssp CTTCCEEECSSCC
T ss_pred cccCcEEEEecCC
Confidence 8889888876554
No 364
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=39.21 E-value=12 Score=34.72 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.+..++++|+.|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4568999999999999843
No 365
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=38.92 E-value=14 Score=38.28 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
...++++||+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999743
No 366
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=38.79 E-value=17 Score=34.04 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHH
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~ 442 (633)
+.-+.+.|++|||||.. +-+|..++
T Consensus 6 ~~~i~i~G~~GsGKSTl--~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL--AQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHH--HHHHHHHH
T ss_pred cEEEEEECCCCCCHHHH--HHHHHHHh
Confidence 44577899999999984 44444443
No 367
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=38.62 E-value=17 Score=37.14 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchhh
Q 006737 417 KDAVVKAKTGTGKSIA 432 (633)
Q Consensus 417 rDvLv~ApTGSGKTla 432 (633)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5799999999999984
No 368
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=38.36 E-value=17 Score=33.92 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 402 pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
.+..+...+ ....|.-+++.|++|||||..
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHH
Confidence 444444332 223467788999999999984
No 369
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=38.24 E-value=19 Score=42.57 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=38.3
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHhcCCCceEE--------EEECCccchHHH---HHHhc-CCCcEEEECchhhHHHHh
Q 006737 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVL--------TLVGGTRFKVDQ---RRLES-DPCQILVATPGRLLDHIE 523 (633)
Q Consensus 456 ~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~--------~l~Gg~~~~~~~---~~l~~-~~~dILIaTPgrLl~lL~ 523 (633)
-++||.++++..+..+...+..... ..++++. .++|+.....+. ..+.. +.++|||||- .+.
T Consensus 632 ~rvLIF~~t~~~ae~L~~~L~~~~~-l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~~~ 705 (936)
T 4a2w_A 632 TRTLLFAKTRALVSALKKCMEENPI-LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD 705 (936)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCST-TSSCCCEEC----------------------------CCSEEEEEC-----C--
T ss_pred CeEEEEeCCHHHHHHHHHHHhhCcc-ccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----chh
Confidence 4699999999999999888876421 1123333 334445443332 34444 6679999993 222
Q ss_pred cccCcccccCCeeEEEEecc
Q 006737 524 NKSGLSVRLMGLKMLVLDEA 543 (633)
Q Consensus 524 ~~~~~~~~Ls~l~~LVIDEA 543 (633)
. .+++..+.+||+=++
T Consensus 706 e----GIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 706 E----GIDIVQCNLVVLYEY 721 (936)
T ss_dssp --------CCCCSEEEEESC
T ss_pred c----CCcchhCCEEEEeCC
Confidence 2 366777887776443
No 370
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=37.86 E-value=28 Score=35.31 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.++-+++++++|+|||...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667889999999999853
No 371
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=37.71 E-value=14 Score=39.73 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
++.+++.||+|+|||+..
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 468999999999999754
No 372
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=37.39 E-value=23 Score=33.06 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=32.1
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEec
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSA 573 (633)
.-.++|+||.+.-+|......+..++..+....|+|++|-
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith 125 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITL 125 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 4468999999999998778888888877766778777763
No 373
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=37.12 E-value=14 Score=38.32 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=13.8
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
-++++||||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999743
No 374
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=36.87 E-value=15 Score=38.01 Aligned_cols=51 Identities=10% Similarity=0.093 Sum_probs=28.0
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHH-HHH-HHhCCCcEEEEccCCCCchhh
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEA-TLS-ACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~-aIp-~il~grDvLv~ApTGSGKTla 432 (633)
.+|+++.-...+++.|.+.-. .++... .+. .....+.++++||+|+|||+.
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGLRGPPKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGSCCSEEEEESSTTSSHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhccCCCceEEEECCCCCCHHHH
Confidence 357777656666666654310 000000 000 112356899999999999974
No 375
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=36.82 E-value=11 Score=34.38 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.|.-++++|+.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3557899999999999843
No 376
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=36.10 E-value=27 Score=39.56 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=50.2
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcC-------------------------CCceEEEEECCccchHHH---HHHhcCCC
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNH-------------------------DGIGVLTLVGGTRFKVDQ---RRLESDPC 508 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~-------------------------~~i~v~~l~Gg~~~~~~~---~~l~~~~~ 508 (633)
++||.+|++.-+..++..+...+... ....+..++|+.....+. ..+..+..
T Consensus 244 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 323 (702)
T 2p6r_A 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 323 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCC
Confidence 49999999999999988887653210 012467788888765443 33455778
Q ss_pred cEEEECchhhHHHHhcccCcccccCCeeEEEE
Q 006737 509 QILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540 (633)
Q Consensus 509 dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LVI 540 (633)
+|||||. .+.. .+++..+.+||-
T Consensus 324 ~vlvaT~-----~l~~----Gidip~~~~VI~ 346 (702)
T 2p6r_A 324 KVVVATP-----TLAA----GVNLPARRVIVR 346 (702)
T ss_dssp CEEEECS-----TTTS----SSCCCBSEEEEC
T ss_pred eEEEECc-----HHhc----cCCCCceEEEEc
Confidence 9999995 2222 367777776543
No 377
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=35.70 E-value=29 Score=36.35 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=19.8
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHHh
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~~ 444 (633)
.|.-+.+++++|+|||.. +-.|..++..
T Consensus 156 ~g~vi~lvG~nGsGKTTl--l~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTS--LGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHH--HHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHH--HHHHHhhccc
Confidence 355688999999999984 4445555543
No 378
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=35.67 E-value=24 Score=42.32 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=50.3
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEEEECchhhHHHHhcccCcccccCC-e
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG-L 535 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~-l 535 (633)
++||.|+|+.-|..+++.+... +.+..++|+.. .....+..+..+|||||... .+.+..+ +++.. +
T Consensus 277 ~~LVF~~t~~~a~~l~~~L~~~------~~v~~lhg~~~--~~l~~F~~G~~~VLVaTas~-Tdv~~rG----IDip~VI 343 (1054)
T 1gku_B 277 GGIIYARTGEEAEEIYESLKNK------FRIGIVTATKK--GDYEKFVEGEIDHLIGTAHY-YGTLVRG----LDLPERI 343 (1054)
T ss_dssp CEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSS--HHHHHHHHTSCSEEEEECC-------CC----SCCTTTC
T ss_pred CEEEEEcCHHHHHHHHHHHhhc------cCeeEEeccHH--HHHHHHHcCCCcEEEEecCC-CCeeEec----cccCCcc
Confidence 4899999999988877655432 67888888763 44556777788999993100 0233333 77889 4
Q ss_pred eEEEEeccc
Q 006737 536 KMLVLDEAD 544 (633)
Q Consensus 536 ~~LVIDEAD 544 (633)
++||.=.+-
T Consensus 344 ~~VI~~~~P 352 (1054)
T 1gku_B 344 RFAVFVGCP 352 (1054)
T ss_dssp CEEEEESCC
T ss_pred cEEEEeCCC
Confidence 888877666
No 379
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=35.55 E-value=28 Score=35.40 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=24.7
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEec
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSA 573 (633)
....++|++..|.+.+. ..+..++..+++...+++.|-
T Consensus 150 ~~ad~ill~k~dl~de~---~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 150 GYADRILLTKTDVAGEA---EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp HTCSEEEEECTTTCSCT---HHHHHHHHHHCSSSCEEECCS
T ss_pred HhCCEEEEECcccCCHH---HHHHHHHHHhCCCCeEEEecc
Confidence 35678899999887433 566666666665555555443
No 380
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=35.40 E-value=13 Score=34.93 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=15.9
Q ss_pred hCCCcEEEEccCCCCchhh
Q 006737 414 LEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTla 432 (633)
..|.-+.+.+|+|+|||..
T Consensus 23 ~~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp ESSEEEEEEESTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3567789999999999974
No 381
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=35.38 E-value=13 Score=38.77 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
-++|+||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999743
No 382
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=35.14 E-value=16 Score=35.75 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=29.5
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHH---HCCCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVD---CLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~---~lpk~~Q~IlfSATl~~el 579 (633)
+.+-++||+||.-.-+|......+..++. .+... .+|+++.--...+
T Consensus 143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~-~tviivtH~~~~~ 192 (237)
T 2cbz_A 143 YSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN-KTRILVTHSMSYL 192 (237)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTT-SEEEEECSCSTTG
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCC-CEEEEEecChHHH
Confidence 34567899999999888766666666652 23333 4555554443333
No 383
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=34.31 E-value=23 Score=33.22 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=21.9
Q ss_pred ccCccceEEEeehh------hHHHHhhcCCceEEEEEcccc
Q 006737 597 ETPVKVSKYNIYVF------VLVLSIKIQAFYIICFVYTIS 631 (633)
Q Consensus 597 ~~~~~V~q~~i~v~------~l~~~~k~~~~~~LVFcnT~s 631 (633)
.+..+|.|.++++. .+.........++||||+|+.
T Consensus 25 ~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~ 65 (191)
T 2p6n_A 25 AASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKA 65 (191)
T ss_dssp ---CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHH
T ss_pred CCCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHH
Confidence 35567888888764 233333344568999999974
No 384
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=34.28 E-value=14 Score=39.71 Aligned_cols=16 Identities=38% Similarity=0.380 Sum_probs=13.3
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
-++|+||||+|||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3688999999999753
No 385
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=33.94 E-value=21 Score=38.50 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
..++|++||+|+|||...
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999853
No 386
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=33.85 E-value=19 Score=35.69 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=17.8
Q ss_pred HhCCCcEEEEccCCCCchhhh
Q 006737 413 CLEGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlay 433 (633)
.+.|+.+++.|+.|+|||...
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345899999999999999853
No 387
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=33.40 E-value=24 Score=32.84 Aligned_cols=17 Identities=35% Similarity=0.345 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
.-++++|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999843
No 388
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=33.27 E-value=17 Score=33.36 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=16.4
Q ss_pred HhCCCcEEEEccCCCCchhh
Q 006737 413 CLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTla 432 (633)
+..+.-++++|+.|||||..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHH
T ss_pred CcCCCEEEEECCCCCCHHHH
Confidence 34566799999999999984
No 389
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=33.27 E-value=14 Score=38.54 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=28.2
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEecc
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSAT 574 (633)
.+.+++++||--.-+|......+..++..+...-.+|+++.-
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH 343 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITH 343 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEES
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 456788888888777776777777777766544445555443
No 390
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=33.11 E-value=18 Score=35.95 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=34.3
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+.+-++||+||.-.-+|......+..++..+... .+|+++.--...+
T Consensus 171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~-~tviivtH~~~~~ 217 (260)
T 2ghi_A 171 LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN-RTLIIIAHRLSTI 217 (260)
T ss_dssp HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTT-SEEEEECSSGGGS
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHhcCC-CEEEEEcCCHHHH
Confidence 3456799999999999887888888888776543 5777766554444
No 391
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=33.10 E-value=15 Score=34.03 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.+.-++++|+.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456789999999999984
No 392
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=33.05 E-value=17 Score=33.37 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.5
Q ss_pred CcEEEEccCCCCchhh
Q 006737 417 KDAVVKAKTGTGKSIA 432 (633)
Q Consensus 417 rDvLv~ApTGSGKTla 432 (633)
.-+++++|+|+|||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3478899999999984
No 393
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=32.90 E-value=19 Score=33.05 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=19.5
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHH
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~ 442 (633)
..|.-+.+.+|.|+|||. ++-++..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 456678899999999998 444554444
No 394
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=32.78 E-value=18 Score=35.11 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=30.3
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHH-HHHCCCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENI-VDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~I-l~~lpk~~Q~IlfSATl~~el 579 (633)
+.+-+++++||--.-+|......+..+ +..+.. -.+|+++.--...+
T Consensus 146 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 146 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTSKMEHL 193 (229)
T ss_dssp HSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTT-TSEEEEECCCHHHH
T ss_pred hcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhC-CCEEEEEcCChHHH
Confidence 456789999999988887666666664 333333 34666665544443
No 395
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=32.70 E-value=19 Score=34.74 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=33.9
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
+.+-++||+||--.-+|......+..++..+...-.+|+++.--...
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 195 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 56778999999999999888888888877664333466665544433
No 396
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=32.65 E-value=18 Score=35.07 Aligned_cols=44 Identities=20% Similarity=0.115 Sum_probs=31.7
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccC
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl 575 (633)
+.+-++||+||--.-+|......+..++..+...-.+|+++.--
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 199 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 55678999999999898877788888777664333466665443
No 397
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=32.52 E-value=18 Score=36.38 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=31.9
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCC-CCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp-k~~Q~IlfSATl~~e 578 (633)
+.+-++||+||--.-+|......+..++..+. ..-.+|+++.--...
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~ 206 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 45678999999999888877777777777664 223355554443333
No 398
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=32.45 E-value=18 Score=35.58 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=34.6
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el~ 580 (633)
+.+-++||+||.-.-+|......+..++..+.. -.+|+++.--...+.
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVK 208 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGGGT
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHH
Confidence 455689999999999988778888888776643 456777665544443
No 399
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=32.43 E-value=16 Score=36.72 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=13.9
Q ss_pred CcEEEEccCCCCchhh
Q 006737 417 KDAVVKAKTGTGKSIA 432 (633)
Q Consensus 417 rDvLv~ApTGSGKTla 432 (633)
.-++++|++|||||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999984
No 400
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=32.40 E-value=21 Score=40.86 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=20.1
Q ss_pred HHHHHHhCCCc--EEEEccCCCCchhh
Q 006737 408 ATLSACLEGKD--AVVKAKTGTGKSIA 432 (633)
Q Consensus 408 ~aIp~il~grD--vLv~ApTGSGKTla 432 (633)
.++..++.|.| ++..++||||||..
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhc
Confidence 36777888876 56779999999975
No 401
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=32.39 E-value=19 Score=34.46 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
-.+++|+.|||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3689999999999853
No 402
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=32.28 E-value=25 Score=33.07 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
.-+.+.|++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999843
No 403
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=32.18 E-value=17 Score=35.62 Aligned_cols=47 Identities=30% Similarity=0.313 Sum_probs=32.0
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+.+-++|++||.-.-+|......+..++..+.. -.+|+++.--...+
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~ 201 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRLSTI 201 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSHHHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCChHHH
Confidence 345578999999998888777777777665543 44666665544444
No 404
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=31.98 E-value=19 Score=35.65 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=0.0
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAI 438 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL 438 (633)
+..|.-+.+.+|+|+|||. ++-++
T Consensus 30 i~~Ge~~~liG~nGsGKST--Llk~l 53 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKST--LINVI 53 (257)
T ss_dssp EETTCEEEEECSTTSSHHH--HHHHH
T ss_pred EeCCCEEEEECCCCCCHHH--HHHHH
No 405
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=31.88 E-value=26 Score=33.21 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=16.9
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
-.+|++++|+|||.. +-++..++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 467889999999984 344444444
No 406
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=31.80 E-value=27 Score=31.63 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=13.1
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
-++++|+.|||||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999984
No 407
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=31.57 E-value=14 Score=33.75 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
+.-++++|+.|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999984
No 408
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=31.50 E-value=63 Score=34.93 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
.+++++.+|+|+|||+.
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 46899999999999984
No 409
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=31.49 E-value=19 Score=40.45 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchh
Q 006737 418 DAVVKAKTGTGKSI 431 (633)
Q Consensus 418 DvLv~ApTGSGKTl 431 (633)
++++.||+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999997
No 410
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=31.44 E-value=14 Score=34.35 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=16.6
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
-+.+++++|||||.. +-+|..++.
T Consensus 4 ~v~IvG~SGsGKSTL--~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL--ITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhh
Confidence 367889999999984 344444444
No 411
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=31.36 E-value=20 Score=35.66 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=32.3
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
+.+-++||+||--.-+|......+..++..+...-.+|+++.--...
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 215 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 215 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 45678999999999888877778877777664333355555443333
No 412
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=31.10 E-value=2.3e+02 Score=24.32 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=49.1
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEE--EECchhhHHHHhcccCccccc
Q 006737 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQIL--VATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 455 ~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dIL--IaTPgrLl~lL~~~~~~~~~L 532 (633)
.+++||+-........+...+... ++ .++ +.+...++..+....
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~-----g~-----------------------~v~~~~~~~~~al~~l~~~~------ 81 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSE-----GF-----------------------NIIDTAADGEEAVIKYKNHY------ 81 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHT-----TC-----------------------EEEEEESSHHHHHHHHHHHG------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-----CC-----------------------eEEEEECCHHHHHHHHHhcC------
Confidence 357888888777666655544332 22 332 334445555554320
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
..+++||+|=- +.+..-...+..|... .+...+|++|+......
T Consensus 82 ~~~dliilD~~--l~~~~g~~~~~~lr~~-~~~~~ii~ls~~~~~~~ 125 (157)
T 3hzh_A 82 PNIDIVTLXIT--MPKMDGITCLSNIMEF-DKNARVIMISALGKEQL 125 (157)
T ss_dssp GGCCEEEECSS--CSSSCHHHHHHHHHHH-CTTCCEEEEESCCCHHH
T ss_pred CCCCEEEEecc--CCCccHHHHHHHHHhh-CCCCcEEEEeccCcHHH
Confidence 13567888732 2333334444455444 45788999999877663
No 413
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=30.88 E-value=20 Score=35.81 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=32.1
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCC-cEEEEeccCChh
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR-QSLLFSATMPKE 578 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~-Q~IlfSATl~~e 578 (633)
+-++||+||--.-+|......+..++..+.... .+|+++.--.+.
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNL 210 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHH
Confidence 678999999998888777778888877664432 366665544443
No 414
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=30.67 E-value=45 Score=31.07 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=14.0
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
+.-+.+.|++|||||..
T Consensus 22 ~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SEEEEEEECTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578899999999984
No 415
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=30.66 E-value=21 Score=34.98 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=32.2
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
+.+-++|++||--.-+|......+..++..+...-.+|+++.--...
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~ 201 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG 201 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 45678999999999998887888888777664333355554443333
No 416
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=30.46 E-value=18 Score=32.90 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
+.-++++|++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999853
No 417
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=30.39 E-value=25 Score=33.57 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=22.2
Q ss_pred eeEEEEecccccCCcC-hHHHHHHHHHHC----CCCCcEEEEecc
Q 006737 535 LKMLVLDEADHLLDLG-FRKDVENIVDCL----PRRRQSLLFSAT 574 (633)
Q Consensus 535 l~~LVIDEAD~Lld~g-f~~~l~~Il~~l----pk~~Q~IlfSAT 574 (633)
-.+|||||||.++... .......++..+ .+..++|+++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 4579999999985321 001111233322 235678887766
No 418
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=30.38 E-value=36 Score=37.17 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=21.5
Q ss_pred hCCCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 414 l~grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
..|.-+++.+++|+|||+...+-++.-+..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 467889999999999998544433444544
No 419
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=30.37 E-value=18 Score=33.26 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.+.-++++|+.|||||..
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999984
No 420
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=30.33 E-value=29 Score=31.57 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.|.-+++.++.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356788999999999984
No 421
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=30.29 E-value=26 Score=36.49 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=0.0
Q ss_pred EEEEccCCCCchhhhHHHHHHHHH
Q 006737 419 AVVKAKTGTGKSIAFLLPAIEAVL 442 (633)
Q Consensus 419 vLv~ApTGSGKTlaylLPiL~~l~ 442 (633)
.+++|+||+|||. ++=++..++
T Consensus 28 ~vi~G~NGaGKT~--ileAI~~~l 49 (371)
T 3auy_A 28 VAIIGENGSGKSS--IFEAVFFAL 49 (371)
T ss_dssp EEEEECTTSSHHH--HHHHHHHHH
T ss_pred EEEECCCCCCHHH--HHHHHHHHH
No 422
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=30.21 E-value=29 Score=31.79 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=13.0
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
-+++.|+.|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 378999999999983
No 423
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=29.83 E-value=22 Score=35.58 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=0.0
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAI 438 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL 438 (633)
+..|.-+.+.+|+|+|||. ++-++
T Consensus 42 i~~Ge~~~i~G~nGsGKST--Llk~l 65 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKST--VAALL 65 (271)
T ss_dssp ECTTCEEEEECSTTSSHHH--HHHHH
T ss_pred ECCCCEEEEECCCCCCHHH--HHHHH
No 424
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=29.79 E-value=22 Score=35.45 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=0.0
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAI 438 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL 438 (633)
+..|.-+.+.+|+|+|||. ++-++
T Consensus 43 i~~Ge~~~l~G~NGsGKST--Llk~l 66 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKST--LSATL 66 (267)
T ss_dssp ECTTCEEEEECCTTSSHHH--HHHHH
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHH
No 425
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=29.75 E-value=18 Score=33.56 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.+.-+++.|+.|||||..
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 355689999999999984
No 426
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=29.68 E-value=30 Score=35.03 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.8
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
-+.|+|++|||||..
T Consensus 33 ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999974
No 427
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=29.63 E-value=22 Score=35.01 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=0.0
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAI 438 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL 438 (633)
+..|.-+.+.+|+|+|||. ++-++
T Consensus 26 i~~Ge~~~l~G~nGsGKST--Llk~l 49 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKST--LGKIL 49 (250)
T ss_dssp EETTCEEEEECSTTSSHHH--HHHHH
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHH
No 428
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=29.60 E-value=28 Score=35.54 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=19.1
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
.|.-+.|.|++|||||+ ++-+|..++.
T Consensus 89 ~g~ivgI~G~sGsGKST--L~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKST--TARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHH--HHHHHHhhcc
Confidence 34567789999999998 4445555554
No 429
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=29.58 E-value=22 Score=35.46 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=34.1
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+.+-++||+||--.-+|......+..++..+...-.+|+++.--...+
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA 222 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 556789999999999988778888888776643344666655444443
No 430
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=29.57 E-value=38 Score=40.91 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=24.6
Q ss_pred EEEccCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCeEEEEEcccHH
Q 006737 420 VVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE 466 (633)
Q Consensus 420 Lv~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~~~vLILvPTRe 466 (633)
+|.|..|||||.+.+- -+.+++.... .+.++|+|||...
T Consensus 5 lV~agAGSGKT~~l~~-ri~~ll~~~~-------~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIIN-SIQDELRRAP-------FGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHH-HHHHHHHHCT-------TSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHH-HHHHHHHhCC-------CCCcEEEEecCcc
Confidence 7889999999986443 3333443321 1235889988763
No 431
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=29.46 E-value=22 Score=35.32 Aligned_cols=24 Identities=42% Similarity=0.571 Sum_probs=0.0
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAI 438 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL 438 (633)
+..|.-+.+.+|+|+|||. ++-++
T Consensus 30 i~~Ge~~~liG~nGsGKST--Ll~~i 53 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKST--LLQIV 53 (266)
T ss_dssp ECTTCEEEEECSTTSSHHH--HHHHH
T ss_pred EcCCCEEEEECCCCCcHHH--HHHHH
No 432
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.45 E-value=22 Score=35.24 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=0.0
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAI 438 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL 438 (633)
+..|.-+.+.+|+|+|||+ ++-++
T Consensus 38 i~~Gei~~l~G~NGsGKST--Llk~l 61 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTT--TLRII 61 (256)
T ss_dssp ECTTCEEEEECCTTSSHHH--HHHHH
T ss_pred EcCCcEEEEECCCCCCHHH--HHHHH
No 433
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=29.35 E-value=1.1e+02 Score=27.77 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=9.2
Q ss_pred EccCCCCchhhhH
Q 006737 422 KAKTGTGKSIAFL 434 (633)
Q Consensus 422 ~ApTGSGKTlayl 434 (633)
....|+|||...+
T Consensus 8 s~kgG~GKTt~a~ 20 (206)
T 4dzz_A 8 NPKGGSGKTTAVI 20 (206)
T ss_dssp CSSTTSSHHHHHH
T ss_pred eCCCCccHHHHHH
Confidence 3567899998643
No 434
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=29.35 E-value=13 Score=34.77 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=16.0
Q ss_pred HhCCCcEEEEccCCCCchhh
Q 006737 413 CLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTla 432 (633)
+..+.-+.+.|++|||||..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 44456788999999999984
No 435
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=29.15 E-value=22 Score=35.08 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=31.3
Q ss_pred EEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 537 ~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+|++||--.-+|......+..++..+...-.+|+++.--...+
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~ 196 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHT 196 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999999999998888888888776643344666665544443
No 436
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=29.00 E-value=30 Score=34.15 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=26.1
Q ss_pred cCccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCCchhh
Q 006737 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 379 ~~F~el~L~~~Ll~~L~~~g~~~pt~iQ~~aIp~il~grDvLv~ApTGSGKTla 432 (633)
.+|+++--.+.+++.|.+. +.. -....++++||+|+|||..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHH
T ss_pred CCHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHH
Confidence 3466665566666666543 110 0112599999999999974
No 437
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=28.74 E-value=23 Score=35.03 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=34.1
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCC-CcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR-RQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~-~Q~IlfSATl~~el 579 (633)
+.+-++||+||--.-+|......+..++..+... -.+|+++.--...+
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~ 192 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 4567899999999989888888888887766433 34666655444443
No 438
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=28.49 E-value=33 Score=31.31 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.+.-++++|+.|||||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3557899999999999843
No 439
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=28.46 E-value=23 Score=35.60 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=25.2
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCC
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLP 563 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lp 563 (633)
+.+-++||+||--.-+|......+..++..+.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 208 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLS 208 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 45678999999998888877777777776653
No 440
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=28.44 E-value=47 Score=34.24 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=17.5
Q ss_pred cEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 418 DAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 418 DvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
-+.+.||+|||||.. +-+|..++.
T Consensus 94 iigI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhc
Confidence 367889999999984 445555554
No 441
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=28.19 E-value=20 Score=32.51 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.3
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
-++++|+.|||||..
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999984
No 442
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=28.19 E-value=25 Score=31.86 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=13.9
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
.++++++.|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999843
No 443
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=27.98 E-value=21 Score=31.96 Aligned_cols=17 Identities=12% Similarity=0.133 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
+-+++.++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999843
No 444
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=27.91 E-value=30 Score=39.63 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
..++|++||+|+|||.+.
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999853
No 445
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=27.71 E-value=51 Score=39.78 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=46.3
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCC----------------------------------CceEEEEECCccchHHH--
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHD----------------------------------GIGVLTLVGGTRFKVDQ-- 500 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~----------------------------------~i~v~~l~Gg~~~~~~~-- 500 (633)
++||.++++.-|..++..+..+.-... ...+..++|+.......
T Consensus 443 ~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v 522 (1108)
T 3l9o_A 443 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 522 (1108)
T ss_dssp CEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHH
Confidence 499999999999988877654321110 01178889987765433
Q ss_pred -HHHhcCCCcEEEECchhhHHHHhcccCcccccCCeeEEE
Q 006737 501 -RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539 (633)
Q Consensus 501 -~~l~~~~~dILIaTPgrLl~lL~~~~~~~~~Ls~l~~LV 539 (633)
..+..+..+|||||.- +.. .+++..+.+||
T Consensus 523 ~~~F~~G~ikVLVAT~v-----la~----GIDiP~v~~VI 553 (1108)
T 3l9o_A 523 EILFQEGFLKVLFATET-----FSI----GLNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHTCCCEEEEESC-----CCS----CCCC--CEEEE
T ss_pred HHHHhCCCCeEEEECcH-----Hhc----CCCCCCceEEE
Confidence 3445677899999942 222 35666777644
No 446
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=27.61 E-value=20 Score=34.08 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
..-++++|++|||||..
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999984
No 447
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=27.46 E-value=25 Score=31.55 Aligned_cols=17 Identities=29% Similarity=0.299 Sum_probs=14.9
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
+++++.++.|||||...
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 58999999999999854
No 448
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=27.38 E-value=24 Score=33.03 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999843
No 449
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=27.22 E-value=25 Score=32.02 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
.-++++++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999853
No 450
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=26.99 E-value=18 Score=37.12 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=32.6
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~el 579 (633)
+.+-++||+||.=.-+|......+..++..+... .++++.+--...+
T Consensus 206 ~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~-~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 206 LKAPGIILLDEATSALDTSNERAIQASLAKVCAN-RTTIVVAHRLSTV 252 (306)
T ss_dssp HHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTT-SEEEEECCSHHHH
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEEcChHHH
Confidence 3456789999999988877777777777766544 4666655433333
No 451
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=26.76 E-value=51 Score=32.40 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=15.6
Q ss_pred CC-cEEEEccCCCCchhhhH
Q 006737 416 GK-DAVVKAKTGTGKSIAFL 434 (633)
Q Consensus 416 gr-DvLv~ApTGSGKTlayl 434 (633)
|+ ++++.++.|+|||.+.+
T Consensus 5 g~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHH
Confidence 44 68999999999998643
No 452
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=26.39 E-value=23 Score=32.81 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=13.3
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
-++++|+.|||||..
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999984
No 453
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=26.17 E-value=21 Score=33.29 Aligned_cols=14 Identities=21% Similarity=0.416 Sum_probs=12.4
Q ss_pred EEEEccCCCCchhh
Q 006737 419 AVVKAKTGTGKSIA 432 (633)
Q Consensus 419 vLv~ApTGSGKTla 432 (633)
+++.|+.|||||..
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 67899999999983
No 454
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=26.11 E-value=40 Score=31.39 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=12.8
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
-+++++++|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478899999999973
No 455
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=25.91 E-value=27 Score=32.79 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchhhh
Q 006737 418 DAVVKAKTGTGKSIAF 433 (633)
Q Consensus 418 DvLv~ApTGSGKTlay 433 (633)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999843
No 456
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=25.76 E-value=41 Score=31.33 Aligned_cols=15 Identities=20% Similarity=0.042 Sum_probs=12.6
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
-+.+.+++|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999973
No 457
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=25.65 E-value=71 Score=32.28 Aligned_cols=44 Identities=7% Similarity=0.063 Sum_probs=29.5
Q ss_pred cCCeeEEEEecccc-cCCcChHHHHHHHHHHCCCCCcEEEEeccCC
Q 006737 532 LMGLKMLVLDEADH-LLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576 (633)
Q Consensus 532 Ls~l~~LVIDEAD~-Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~ 576 (633)
+..-++|||||+|. +.. ...+.+..+++..|.+..+|+.+.++.
T Consensus 74 f~~~kvvii~~~~~kl~~-~~~~aLl~~le~p~~~~~~il~~~~~~ 118 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNA-AINEQLLTLTGLLHDDLLLIVRGNKLS 118 (343)
T ss_dssp CCSCEEEEEECCSSCCCT-THHHHHHHHHTTCBTTEEEEEEESCCC
T ss_pred ccCCeEEEEECCCCCCCh-HHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 56778999999999 653 345566677766665665555554443
No 458
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=25.54 E-value=25 Score=32.61 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.+.-++++|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667899999999999843
No 459
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=25.34 E-value=23 Score=32.83 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.+.-++++|+.|||||..
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 466789999999999984
No 460
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=25.25 E-value=22 Score=33.06 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
+.-++++|+.|||||..
T Consensus 20 ~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34689999999999984
No 461
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=25.19 E-value=28 Score=33.64 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
+.-++++|+.|||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45789999999999984
No 462
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=24.93 E-value=59 Score=30.52 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
|.-+.+.+++|+|||.. +-++..++.
T Consensus 1 G~~i~i~G~nG~GKTTl--l~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL--IHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHH--HHHHHHHHH
T ss_pred CCEEEEECCCCChHHHH--HHHHHhhcc
Confidence 34578999999999984 444444443
No 463
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=24.90 E-value=28 Score=32.26 Aligned_cols=15 Identities=27% Similarity=0.353 Sum_probs=13.1
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
-+.+.|+.|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999984
No 464
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=24.87 E-value=26 Score=31.25 Aligned_cols=15 Identities=20% Similarity=0.115 Sum_probs=13.1
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999984
No 465
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=24.80 E-value=37 Score=32.76 Aligned_cols=19 Identities=26% Similarity=0.099 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.|.-+-+.||.|||||+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3445778999999999843
No 466
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=24.74 E-value=30 Score=35.09 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=30.2
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHH-HHHCCCCCcEEEEeccCChhh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENI-VDCLPRRRQSLLFSATMPKEL 579 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~I-l~~lpk~~Q~IlfSATl~~el 579 (633)
+.+-+++|+||--.-+|......+..+ +..+... .+|+++.--...+
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~-~tviivtHd~~~~ 222 (290)
T 2bbs_A 175 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVTSKMEHL 222 (290)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTT-SEEEEECCCHHHH
T ss_pred HCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCC-CEEEEEecCHHHH
Confidence 456789999999988887666666664 3333333 4666665544444
No 467
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=24.72 E-value=27 Score=32.95 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCCchhh
Q 006737 416 GKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 416 grDvLv~ApTGSGKTla 432 (633)
+..+++.|+.|||||..
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999984
No 468
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=24.66 E-value=42 Score=30.53 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=12.4
Q ss_pred EEEEccCCCCchhh
Q 006737 419 AVVKAKTGTGKSIA 432 (633)
Q Consensus 419 vLv~ApTGSGKTla 432 (633)
+++.|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999984
No 469
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=24.59 E-value=25 Score=46.50 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=17.3
Q ss_pred HhCCCcEEEEccCCCCchhh
Q 006737 413 CLEGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTla 432 (633)
+..++.++++||||+|||+.
T Consensus 1264 l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHH
T ss_pred HHCCCeEEEECCCCCCHHHH
Confidence 44578999999999999974
No 470
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=24.56 E-value=35 Score=33.45 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=31.7
Q ss_pred cCCeeEEEEecccccCCcChHHHHHHHHHHCCCC-CcEEEEeccCChh
Q 006737 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR-RQSLLFSATMPKE 578 (633)
Q Consensus 532 Ls~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~-~Q~IlfSATl~~e 578 (633)
+.+-+++++||--.-+|......+..++..+... -.+|+++.--...
T Consensus 142 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~ 189 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 5567889999999988887777787777766431 2345554443333
No 471
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=24.51 E-value=1.3e+02 Score=35.22 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=36.9
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhc-CCCcEEEECc
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES-DPCQILVATP 515 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~-~~~dILIaTP 515 (633)
+||.+.|++-+..+...+.+. ++.+.+++|+............ ....|+|||.
T Consensus 444 vLVft~sie~se~Ls~~L~~~-----gi~~~vLnak~~~rEa~iia~agr~G~VtIATn 497 (853)
T 2fsf_A 444 VLVGTISIEKSELVSNELTKA-----GIKHNVLNAKFHANEAAIVAQAGYPAAVTIATN 497 (853)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCCEECCTTCHHHHHHHHHTTTSTTCEEEEES
T ss_pred EEEEECcHHHHHHHHHHHHHC-----CCCEEEecCChhHHHHHHHHhcCCCCeEEEecc
Confidence 899999999999988777764 7788888887543322211111 1237999994
No 472
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=24.50 E-value=35 Score=33.11 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
....+++.|+.|||||..
T Consensus 28 ~~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345799999999999984
No 473
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=24.48 E-value=26 Score=31.79 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=12.5
Q ss_pred EEEEccCCCCchhh
Q 006737 419 AVVKAKTGTGKSIA 432 (633)
Q Consensus 419 vLv~ApTGSGKTla 432 (633)
++++|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999984
No 474
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=24.45 E-value=29 Score=32.79 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
...+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999843
No 475
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=24.40 E-value=63 Score=33.07 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.++-+++++++|+|||...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp SCEEEEEESSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556888999999999753
No 476
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=24.39 E-value=25 Score=31.79 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=11.0
Q ss_pred CCcEEEEccCCCCchhhh
Q 006737 416 GKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 416 grDvLv~ApTGSGKTlay 433 (633)
+.-++++|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999843
No 477
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.27 E-value=3e+02 Score=22.73 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=25.5
Q ss_pred CeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 534 ~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
..++||+|- +.+..-...+..+... .+..++|++|+....+
T Consensus 48 ~~dlvi~d~---~~~~~g~~~~~~l~~~-~~~~pii~ls~~~~~~ 88 (142)
T 2qxy_A 48 KIDLVFVDV---FEGEESLNLIRRIREE-FPDTKVAVLSAYVDKD 88 (142)
T ss_dssp CCSEEEEEC---TTTHHHHHHHHHHHHH-CTTCEEEEEESCCCHH
T ss_pred CCCEEEEeC---CCCCcHHHHHHHHHHH-CCCCCEEEEECCCCHH
Confidence 467899985 3332223344444444 3478899999887665
No 478
>2pv9_C Proteinase-activated receptor 4; serine protease, hydrolase; HET: NAG; 3.50A {Mus musculus}
Probab=24.23 E-value=17 Score=23.48 Aligned_cols=8 Identities=50% Similarity=1.240 Sum_probs=6.1
Q ss_pred CCccCCCC
Q 006737 30 GPRTFPGG 37 (633)
Q Consensus 30 ~~~~~~~~ 37 (633)
|||.|||-
T Consensus 7 ~P~~~Pg~ 14 (26)
T 2pv9_C 7 NPRGYPGK 14 (26)
T ss_dssp EECSCTTT
T ss_pred CCccCCCC
Confidence 68888874
No 479
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=24.22 E-value=2.2e+02 Score=31.73 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=47.5
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHH---HHhcCCCc---EEEECchhhHHHHhcccCccc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR---RLESDPCQ---ILVATPGRLLDHIENKSGLSV 530 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~---~l~~~~~d---ILIaTPgrLl~lL~~~~~~~~ 530 (633)
++||.+.++..+..+...+... ++.+..++|+.+...... .+..+... +||+| .. .+..+
T Consensus 418 k~lIFs~~~~~~~~l~~~l~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st-~a--------~g~Gl 483 (644)
T 1z3i_X 418 KVVLVSNYTQTLDLFEKLCRNR-----RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS-KA--------GGCGL 483 (644)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH-----TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG-GG--------SCTTC
T ss_pred EEEEEEccHHHHHHHHHHHHHC-----CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec-cc--------ccCCc
Confidence 6999999999888877766654 678888999987654333 33433332 55555 21 12246
Q ss_pred ccCCeeEEEEecc
Q 006737 531 RLMGLKMLVLDEA 543 (633)
Q Consensus 531 ~Ls~l~~LVIDEA 543 (633)
++..+..||+=+.
T Consensus 484 nl~~a~~Vi~~d~ 496 (644)
T 1z3i_X 484 NLIGANRLVMFDP 496 (644)
T ss_dssp CCTTEEEEEECSC
T ss_pred ccccCCEEEEECC
Confidence 7778877776443
No 480
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=24.17 E-value=2e+02 Score=33.08 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=48.6
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcC---CCc---EEEECchhhHHHHhcccCccc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESD---PCQ---ILVATPGRLLDHIENKSGLSV 530 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~---~~d---ILIaTPgrLl~lL~~~~~~~~ 530 (633)
++||.+..+..+..+...+... ++.+..+.|+++.......+... ... +|++| ..... .+
T Consensus 574 kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt-----~agg~----Gl 639 (800)
T 3mwy_W 574 RVLIFSQMVRMLDILGDYLSIK-----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST-----RAGGL----GI 639 (800)
T ss_dssp CEEEEESCHHHHHHHHHHHHHH-----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH-----HHHTT----TC
T ss_pred eEEEEechHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec-----ccccC----CC
Confidence 6999999999888877777654 67888999998876655544432 223 55554 22222 37
Q ss_pred ccCCeeEEEEecc
Q 006737 531 RLMGLKMLVLDEA 543 (633)
Q Consensus 531 ~Ls~l~~LVIDEA 543 (633)
+|....+||+=+.
T Consensus 640 NL~~a~~VI~~D~ 652 (800)
T 3mwy_W 640 NLMTADTVVIFDS 652 (800)
T ss_dssp CCTTCCEEEESSC
T ss_pred CccccceEEEecC
Confidence 7778887777433
No 481
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=24.13 E-value=40 Score=34.09 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCCchhhhHHHHHHHHHH
Q 006737 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLK 443 (633)
Q Consensus 416 grDvLv~ApTGSGKTlaylLPiL~~l~~ 443 (633)
|.-+.+.|++|||||.. +-+|..++.
T Consensus 80 g~iigI~G~~GsGKSTl--~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTT--ARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHH--HHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHH--HHHHHHHHh
Confidence 44577889999999983 445544443
No 482
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=23.84 E-value=32 Score=34.32 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=0.0
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAI 438 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL 438 (633)
+. |.-+.+.+|+|+|||. ++-++
T Consensus 28 i~-Ge~~~i~G~NGsGKST--Llk~l 50 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTT--LLRAI 50 (263)
T ss_dssp EC-SSEEEEECCTTSSHHH--HHHHH
T ss_pred EC-CEEEEEECCCCCCHHH--HHHHH
No 483
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=23.46 E-value=32 Score=31.99 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=12.8
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
-+.+.|+.|||||..
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999984
No 484
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=23.41 E-value=41 Score=33.49 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=12.9
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
.+.++||+|+|||..
T Consensus 4 ~v~lvG~nGaGKSTL 18 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL 18 (270)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999983
No 485
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=23.40 E-value=28 Score=34.15 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCchhhh
Q 006737 417 KDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 417 rDvLv~ApTGSGKTlay 433 (633)
.-++++|+.|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45899999999999843
No 486
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=23.04 E-value=39 Score=33.62 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=23.2
Q ss_pred eEEEEecccccCC------cChHHHHHHHHHHCCCCCcEEEEe
Q 006737 536 KMLVLDEADHLLD------LGFRKDVENIVDCLPRRRQSLLFS 572 (633)
Q Consensus 536 ~~LVIDEAD~Lld------~gf~~~l~~Il~~lpk~~Q~IlfS 572 (633)
-+|||||+|.+.+ ..+...+..++...+ ...+|+.+
T Consensus 130 ~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~il~g 171 (350)
T 2qen_A 130 FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLP-NLKIILTG 171 (350)
T ss_dssp EEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCT-TEEEEEEE
T ss_pred EEEEEeCHHHHhccCccchhhHHHHHHHHHHhcC-CeEEEEEC
Confidence 4799999999875 235566666666543 45555543
No 487
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=22.92 E-value=35 Score=32.67 Aligned_cols=18 Identities=33% Similarity=0.518 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCCchhh
Q 006737 415 EGKDAVVKAKTGTGKSIA 432 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTla 432 (633)
.+..+++.|+.|||||..
T Consensus 15 ~~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345799999999999984
No 488
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=22.88 E-value=1.5e+02 Score=31.51 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=49.0
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHH---HHhcC-CCc-EEEECchhhHHHHhcccCcccc
Q 006737 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR---RLESD-PCQ-ILVATPGRLLDHIENKSGLSVR 531 (633)
Q Consensus 457 ~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~---~l~~~-~~d-ILIaTPgrLl~lL~~~~~~~~~ 531 (633)
++||.+.++..+..+...+.... ++.+..++|+.+...... .+..+ .+. |||+|- .+ +..++
T Consensus 343 k~lvF~~~~~~~~~l~~~l~~~~----~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~-~~--------~~Gln 409 (500)
T 1z63_A 343 KIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-AG--------GFGIN 409 (500)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHH----TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC-CC---------CCCC
T ss_pred cEEEEEehHHHHHHHHHHHHHhh----CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc-cc--------cCCCc
Confidence 59999999999988888777643 556778899887554332 33333 344 566652 21 22467
Q ss_pred cCCeeEEEEeccc
Q 006737 532 LMGLKMLVLDEAD 544 (633)
Q Consensus 532 Ls~l~~LVIDEAD 544 (633)
+..+.+||+=+.+
T Consensus 410 l~~~~~vi~~d~~ 422 (500)
T 1z63_A 410 LTSANRVIHFDRW 422 (500)
T ss_dssp CTTCSEEEESSCC
T ss_pred hhhCCEEEEeCCC
Confidence 8888888875543
No 489
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=22.87 E-value=52 Score=34.17 Aligned_cols=10 Identities=0% Similarity=-0.287 Sum_probs=5.8
Q ss_pred HHHHHHHHHc
Q 006737 388 PLTIKALTAA 397 (633)
Q Consensus 388 ~~Ll~~L~~~ 397 (633)
..+.+.|.+.
T Consensus 177 ~dl~~~L~~~ 186 (392)
T 4ag6_A 177 KELYEYCVKK 186 (392)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4566666554
No 490
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=22.82 E-value=35 Score=33.33 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCCchhhh
Q 006737 415 EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlay 433 (633)
.+.-+.+.+|+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999843
No 491
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=22.81 E-value=1.3e+02 Score=32.26 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=21.5
Q ss_pred HHHHHHHHHh---CCCcEEEEccCCCCchhhh
Q 006737 405 VQEATLSACL---EGKDAVVKAKTGTGKSIAF 433 (633)
Q Consensus 405 iQ~~aIp~il---~grDvLv~ApTGSGKTlay 433 (633)
.=..+|..++ .|+-+.+.+++|+|||...
T Consensus 160 tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 160 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp HHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred ccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 3345555543 5889999999999999843
No 492
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=22.79 E-value=32 Score=31.53 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.2
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
-+.+.+++|||||..
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999984
No 493
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.48 E-value=40 Score=34.18 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=0.0
Q ss_pred EEEEccCCCCchhhhHHHHHHHH
Q 006737 419 AVVKAKTGTGKSIAFLLPAIEAV 441 (633)
Q Consensus 419 vLv~ApTGSGKTlaylLPiL~~l 441 (633)
.++++++|+|||. ++-++..+
T Consensus 27 ~~i~G~NGsGKS~--ll~ai~~l 47 (322)
T 1e69_A 27 TAIVGPNGSGKSN--IIDAIKWV 47 (322)
T ss_dssp EEEECCTTTCSTH--HHHHHHHT
T ss_pred EEEECCCCCcHHH--HHHHHHHH
No 494
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=22.45 E-value=1.7e+02 Score=29.87 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=43.2
Q ss_pred HH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCchHHHHHHHHhhcccCcc
Q 006737 42 QW-KRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLFDKADPDSETNQHKPMSPDEHVKALADRFMKEGAE 113 (633)
Q Consensus 42 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (633)
+| --||....++++-..++.+..-|..++=.+|+...... -+.++.+++||||| ||+
T Consensus 66 ~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ierLs~pg------------g~~dprL~~LAe~~---GGv 123 (302)
T 3ibp_A 66 DVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPG------------GSEDQRLNALAERF---GGV 123 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC------------CCCCHHHHHHHHHS---SSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------CCCCHHHHHHHHHh---CCE
Confidence 44 56899999998888888888888888888888743211 13577899999999 565
No 495
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=22.39 E-value=2e+02 Score=33.97 Aligned_cols=53 Identities=17% Similarity=-0.019 Sum_probs=37.1
Q ss_pred EEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhc-CCCcEEEECc
Q 006737 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES-DPCQILVATP 515 (633)
Q Consensus 458 vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~-~~~dILIaTP 515 (633)
+||.+.|++-+..+...+.+. ++.+.+++|+............ ....|+|||.
T Consensus 463 vLVft~Sie~sE~Ls~~L~~~-----Gi~~~vLnak~~~rEa~iia~agr~G~VtIATn 516 (922)
T 1nkt_A 463 VLIGTTSVERSEYLSRQFTKR-----RIPHNVLNAKYHEQEATIIAVAGRRGGVTVATN 516 (922)
T ss_dssp EEEEESCHHHHHHHHHHHHHT-----TCCCEEECSSCHHHHHHHHHTTTSTTCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCEEEecCChhHHHHHHHHhcCCCCeEEEecc
Confidence 899999999999888777764 7888899988543322211111 1237999994
No 496
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=22.37 E-value=3.2e+02 Score=22.36 Aligned_cols=85 Identities=13% Similarity=0.059 Sum_probs=49.8
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHhcCCCceEEEEECCccchHHHHHHhcCCCcEE--EECchhhHHHHhcccCccccc
Q 006737 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQIL--VATPGRLLDHIENKSGLSVRL 532 (633)
Q Consensus 455 ~~~vLILvPTReLa~Qi~~~l~~l~~~~~~i~v~~l~Gg~~~~~~~~~l~~~~~dIL--IaTPgrLl~lL~~~~~~~~~L 532 (633)
.+++||+-........+...+... + ++++ +.+....+..+...
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~-----g-----------------------~~v~~~~~~~~~a~~~~~~~------- 53 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESL-----G-----------------------YDVLGVFDNGEEAVRCAPDL------- 53 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHH-----T-----------------------CEEEEEESSHHHHHHHHHHH-------
T ss_pred CceEEEEECCHHHHHHHHHHHHHC-----C-----------------------CeeEEEECCHHHHHHHHHhC-------
Confidence 457888888887777766655543 2 2333 33444455555432
Q ss_pred CCeeEEEEecccccCCcChHHHHHHHHHHCCCCCcEEEEeccCChh
Q 006737 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578 (633)
Q Consensus 533 s~l~~LVIDEAD~Lld~gf~~~l~~Il~~lpk~~Q~IlfSATl~~e 578 (633)
..++||+|-.- -.+..-...+..+... +..++|++|+.....
T Consensus 54 -~~dlii~d~~~-~~~~~g~~~~~~l~~~--~~~~ii~ls~~~~~~ 95 (140)
T 3cg0_A 54 -RPDIALVDIML-CGALDGVETAARLAAG--CNLPIIFITSSQDVE 95 (140)
T ss_dssp -CCSEEEEESSC-CSSSCHHHHHHHHHHH--SCCCEEEEECCCCHH
T ss_pred -CCCEEEEecCC-CCCCCHHHHHHHHHhC--CCCCEEEEecCCCHH
Confidence 35678888431 1122233445555555 578899999877655
No 497
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=22.22 E-value=37 Score=35.67 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=17.9
Q ss_pred CCCcEEEEccCCCCchhhhHHHHHHH
Q 006737 415 EGKDAVVKAKTGTGKSIAFLLPAIEA 440 (633)
Q Consensus 415 ~grDvLv~ApTGSGKTlaylLPiL~~ 440 (633)
.|.-+.+.+|+|||||. ++-++.-
T Consensus 29 ~Ge~~~llGpsGsGKST--LLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTT--LLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHH--HHHHHHT
T ss_pred CCCEEEEECCCCchHHH--HHHHHhc
Confidence 46678899999999998 4444433
No 498
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=22.09 E-value=30 Score=32.52 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=13.1
Q ss_pred cEEEEccCCCCchhh
Q 006737 418 DAVVKAKTGTGKSIA 432 (633)
Q Consensus 418 DvLv~ApTGSGKTla 432 (633)
.+++.|+.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999984
No 499
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=21.85 E-value=31 Score=35.38 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=0.0
Q ss_pred EEEEccCCCCchhhh
Q 006737 419 AVVKAKTGTGKSIAF 433 (633)
Q Consensus 419 vLv~ApTGSGKTlay 433 (633)
.+++||+|+|||...
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 500
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=21.72 E-value=38 Score=35.42 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=0.0
Q ss_pred HhCCCcEEEEccCCCCchhhhHHHHHH
Q 006737 413 CLEGKDAVVKAKTGTGKSIAFLLPAIE 439 (633)
Q Consensus 413 il~grDvLv~ApTGSGKTlaylLPiL~ 439 (633)
+..|.-+.+.+|+|||||. +|-++.
T Consensus 38 i~~Ge~~~llGpnGsGKST--LLr~ia 62 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTT--ILRLIA 62 (355)
T ss_dssp EETTCEEEEECSTTSSHHH--HHHHHH
T ss_pred ECCCCEEEEECCCCCcHHH--HHHHHh
Done!