BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006738
         (633 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490 OS=Arabidopsis thaliana
           GN=At2g33490 PE=1 SV=2
          Length = 623

 Score =  605 bits (1561), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 377/637 (59%), Positives = 449/637 (70%), Gaps = 65/637 (10%)

Query: 1   MKTSLRRWRGFTLHKHGDSKDRRDLRPLAQLDELAQASQDMQDMRGCYDSLLSAAAATAN 60
           MKTSLRR RG  LHKH +SKDRRDLR L Q DELAQASQD++DMR CYDSLL+AAAATAN
Sbjct: 1   MKTSLRRLRG-VLHKH-ESKDRRDLRALVQKDELAQASQDVEDMRDCYDSLLNAAAATAN 58

Query: 61  SAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120
           SAYEFSESL+ELGACLLEKTALND+EESG+VL+MLGK+QFELQKLVD YRSHIFQTITIP
Sbjct: 59  SAYEFSESLRELGACLLEKTALNDDEESGRVLIMLGKLQFELQKLVDKYRSHIFQTITIP 118

Query: 121 SESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQ 180
           SESLLNEL+ VEEM+R CDEKRNV E ML RQREKGRSK GKGETFS QQLQEAHD+Y+ 
Sbjct: 119 SESLLNELRIVEEMQRLCDEKRNVYEGMLTRQREKGRSKGGKGETFSPQQLQEAHDDYEN 178

Query: 181 EATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDY 240
           E TLFVFRLKSLKQGQ+RSLLTQAARHHAAQL F KKAL SLE VDPHV+MV E QHIDY
Sbjct: 179 ETTLFVFRLKSLKQGQTRSLLTQAARHHAAQLCFFKKALSSLEEVDPHVQMVTESQHIDY 238

Query: 241 QFRGL--EDDDMDDGDDDDNGSDSRGDGELSFDYRQNEQEQDAVSSSRKSMELDQPDITF 298
            F GL  +D D +  +++++GS+   DGELSF+YR N+++QDA SS+  S EL   DITF
Sbjct: 239 HFSGLEDDDGDDEIENNENDGSEVHDDGELSFEYRVNDKDQDADSSAGGSSELGNSDITF 298

Query: 299 SQVARLETSKETLDRNYRKSLSFSREVRFSSQSAPLFMDNKSD-LDDRRKQMRQSSTRKF 357
            Q+    T++E  + NYRKS SF R+VR  SQSAPLF +N++    ++  +MR + TRKF
Sbjct: 299 PQIGGPYTAQENEEGNYRKSHSFRRDVRAVSQSAPLFPENRTTPPSEKLLRMRSTLTRKF 358

Query: 358 NTYVLPTPGDTKSSHSP-------GPGSPVPSALRPSLGGQTYNLRHESPLDMLKFDKSL 410
           NTY LPTP +T  S S          GS  P+         T  + + SPL+      + 
Sbjct: 359 NTYALPTPVETTRSPSSTTSPGHKNVGSSNPTK------AITKQIWYSSPLE------TR 406

Query: 411 GGDKTSKDTA----QSILRESNNNTASIRLPPPPPADGFLLSRLDPRGASVPKKVKRQSF 466
           G  K S  +     + +LRESN NT+ +   PPP ADG L SRL          +KR+SF
Sbjct: 407 GPAKVSSRSMVALKEQVLRESNKNTSRL---PPPLADGLLFSRLG--------TLKRRSF 455

Query: 467 SGPLTG-PRPAKPVLKEHQQLLSGPLLRNPMPQPPSSSPKVSPSTSPTFVSSPKISELHE 525
           SGPLT  P P KP L     L SGP+ RNP+ + P  S   SP+ SPTFVS+PKISELHE
Sbjct: 456 SGPLTSKPLPNKP-LSTTSHLYSGPIPRNPVSKLPKVS--SSPTASPTFVSTPKISELHE 512

Query: 526 LPRPPGRLNLNSARPMGLVGHSAPLLPKGQVLSAPSKSAMENVASPLPKPPQTITRSFSI 585
           LPRPP R +  S+R +   G+SAPL+ + Q+LS P    + N ASPLP PP  ITRSFSI
Sbjct: 513 LPRPPPRSSTKSSREL---GYSAPLVSRSQLLSKP---LITNSASPLPIPP-AITRSFSI 565

Query: 586 PSSSHEMETAHNLEMA------------SPPLTPISL 610
           P+S+     A +L+M+            SPPLTP+SL
Sbjct: 566 PTSNLR---ASDLDMSKTSLGTKKLGTPSPPLTPMSL 599


>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus
           GN=Usp42 PE=3 SV=1
          Length = 1325

 Score = 33.5 bits (75), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 69/175 (39%), Gaps = 23/175 (13%)

Query: 368 TKSSHSPGPGSPVPSALRPSLGGQTYNLRHESPL--------DMLKFDKSLGGDKTSKDT 419
           T  +HSPG  SP     RP +  +  N +  +P          ++K    L G    KDT
Sbjct: 421 THPAHSPGQSSP-----RPGISQRVVNSKQAAPGFIGPQLPPHVMKNTPHLNGTTPVKDT 475

Query: 420 AQSILRESNNNTASIRLPPPPPADGFLLSRLDPRGASVPKKVKRQSFSGPLTGPRPAKPV 479
             S +   N NT+  R  P   +       ++ R + +P+  K+Q  +  +    P +  
Sbjct: 476 PSSSVSSPNGNTSVNRASPATASTSVQNWSVN-RPSVIPEHPKKQKITISIHNKLPVRQG 534

Query: 480 LKEHQQLLSGPLLRNPMPQPPSSS---PKVSPSTS--PTFVSSPKISELHELPRP 529
             +    L GP L  P    PSS+   P    STS  PT   SP  S     P+P
Sbjct: 535 QAQLNNNLHGPCLEAPSKAAPSSTITNPSAIQSTSNAPTTSVSPSES----CPKP 585


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.128    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 237,052,702
Number of Sequences: 539616
Number of extensions: 10848941
Number of successful extensions: 55081
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 1025
Number of HSP's that attempted gapping in prelim test: 49955
Number of HSP's gapped (non-prelim): 4252
length of query: 633
length of database: 191,569,459
effective HSP length: 124
effective length of query: 509
effective length of database: 124,657,075
effective search space: 63450451175
effective search space used: 63450451175
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)