Query 006738
Match_columns 633
No_of_seqs 46 out of 48
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 13:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07642 BAR_ASAP2 The Bin/Amph 100.0 5E-57 1.1E-61 440.2 22.6 200 27-232 3-215 (215)
2 cd07640 BAR_ASAP3 The Bin/Amph 100.0 3.8E-51 8.2E-56 396.2 21.3 199 27-232 3-213 (213)
3 cd07604 BAR_ASAPs The Bin/Amph 100.0 3.2E-44 6.9E-49 349.5 20.5 201 27-232 3-215 (215)
4 cd07641 BAR_ASAP1 The Bin/Amph 100.0 8.3E-44 1.8E-48 347.2 21.0 199 27-232 3-215 (215)
5 cd07603 BAR_ACAPs The Bin/Amph 99.9 2.4E-24 5.2E-29 208.2 18.2 190 29-229 5-200 (200)
6 cd07634 BAR_GAP10-like The Bin 99.9 1.1E-22 2.4E-27 198.8 18.9 193 32-228 9-206 (207)
7 cd07639 BAR_ACAP1 The Bin/Amph 99.9 4.3E-22 9.3E-27 193.7 18.3 189 30-229 6-200 (200)
8 cd07606 BAR_SFC_plant The Bin/ 99.9 3.7E-21 8.1E-26 186.9 18.2 188 28-228 3-202 (202)
9 cd07601 BAR_APPL The Bin/Amphi 99.9 2E-20 4.4E-25 183.6 20.4 201 30-235 6-213 (215)
10 cd07307 BAR The Bin/Amphiphysi 99.8 1.9E-19 4.1E-24 159.0 18.3 183 41-228 9-194 (194)
11 KOG0521 Putative GTPase activa 99.8 6.1E-19 1.3E-23 198.4 19.2 202 27-237 22-228 (785)
12 cd07637 BAR_ACAP3 The Bin/Amph 99.7 1.2E-16 2.6E-21 155.3 19.8 189 30-229 6-200 (200)
13 PF03114 BAR: BAR domain; Int 99.7 3.8E-15 8.3E-20 136.5 21.6 188 39-229 33-228 (229)
14 cd07635 BAR_GRAF2 The Bin/Amph 99.6 1.1E-13 2.3E-18 136.1 18.6 194 33-228 10-206 (207)
15 cd07638 BAR_ACAP2 The Bin/Amph 99.6 3.8E-13 8.3E-18 131.4 19.9 192 28-229 4-200 (200)
16 cd07602 BAR_RhoGAP_OPHN1-like 99.5 2.9E-13 6.2E-18 133.0 18.4 190 38-229 15-207 (207)
17 cd07636 BAR_GRAF The Bin/Amphi 99.4 2.5E-11 5.5E-16 119.5 19.5 196 31-228 7-206 (207)
18 smart00721 BAR BAR domain. 99.4 7.3E-11 1.6E-15 111.7 21.8 195 34-230 29-238 (239)
19 cd07631 BAR_APPL1 The Bin/Amph 99.4 3.6E-11 7.9E-16 119.1 19.2 187 40-235 21-213 (215)
20 cd07633 BAR_OPHN1 The Bin/Amph 99.3 2E-10 4.4E-15 113.3 18.3 194 33-228 10-206 (207)
21 cd07593 BAR_MUG137_fungi The B 99.1 7.4E-09 1.6E-13 102.5 20.6 185 32-226 7-205 (215)
22 cd07595 BAR_RhoGAP_Rich-like T 99.1 1.1E-08 2.4E-13 102.5 21.4 200 33-235 16-230 (244)
23 cd07632 BAR_APPL2 The Bin/Amph 99.1 4.3E-09 9.2E-14 104.5 18.1 175 41-222 22-199 (215)
24 cd07592 BAR_Endophilin_A The B 99.1 1.4E-08 3E-13 101.0 21.7 186 33-230 8-217 (223)
25 cd07594 BAR_Endophilin_B The B 99.0 8.3E-08 1.8E-12 96.0 21.7 192 32-227 17-227 (229)
26 KOG1118 Lysophosphatidic acid 98.9 7E-08 1.5E-12 100.6 16.8 142 72-228 88-234 (366)
27 cd07620 BAR_SH3BP1 The Bin/Amp 98.8 4.6E-07 1E-11 92.4 20.3 155 69-232 59-240 (257)
28 cd07600 BAR_Gvp36 The Bin/Amph 98.8 1.8E-07 3.9E-12 94.2 17.2 139 83-227 100-240 (242)
29 cd07615 BAR_Endophilin_A3 The 98.8 3.6E-07 7.7E-12 91.4 18.5 151 68-230 65-217 (223)
30 cd07616 BAR_Endophilin_B1 The 98.8 5.8E-07 1.3E-11 90.2 19.9 190 33-226 18-226 (229)
31 cd07614 BAR_Endophilin_A2 The 98.8 5.1E-07 1.1E-11 90.2 18.6 151 67-229 64-216 (223)
32 cd07613 BAR_Endophilin_A1 The 98.8 3E-07 6.5E-12 92.0 16.5 151 68-230 65-217 (223)
33 cd07618 BAR_Rich1 The Bin/Amph 98.8 6.8E-07 1.5E-11 90.5 19.0 158 69-235 59-232 (246)
34 cd07619 BAR_Rich2 The Bin/Amph 98.7 1.7E-06 3.6E-11 87.9 19.2 158 71-235 61-234 (248)
35 PF08397 IMD: IRSp53/MIM homol 98.6 3.6E-06 7.7E-11 82.3 20.0 188 41-235 5-214 (219)
36 cd07617 BAR_Endophilin_B2 The 98.6 7.3E-06 1.6E-10 82.1 21.6 182 33-227 18-218 (220)
37 cd07596 BAR_SNX The Bin/Amphip 98.4 2.4E-05 5.2E-10 72.9 18.3 190 38-228 9-218 (218)
38 cd07590 BAR_Bin3 The Bin/Amphi 98.3 0.00011 2.3E-09 73.8 20.9 179 41-234 31-217 (225)
39 PF09325 Vps5: Vps5 C terminal 98.3 0.00013 2.8E-09 70.1 19.8 195 32-227 23-235 (236)
40 cd07627 BAR_Vps5p The Bin/Amph 98.0 0.00059 1.3E-08 66.9 19.2 182 36-225 15-213 (216)
41 cd07591 BAR_Rvs161p The Bin/Am 97.9 0.0021 4.6E-08 64.1 20.7 182 41-236 27-218 (224)
42 PF06456 Arfaptin: Arfaptin-li 97.9 0.0021 4.5E-08 64.7 20.6 182 32-221 33-228 (229)
43 cd07623 BAR_SNX1_2 The Bin/Amp 97.9 0.0015 3.2E-08 64.7 18.4 184 38-229 25-223 (224)
44 cd07624 BAR_SNX7_30 The Bin/Am 97.7 0.004 8.7E-08 60.7 19.1 173 41-227 23-199 (200)
45 cd07599 BAR_Rvs167p The Bin/Am 97.7 0.0042 9.1E-08 60.5 19.2 183 41-225 18-212 (216)
46 cd07659 BAR_PICK1 The Bin/Amph 97.6 0.018 3.8E-07 58.3 21.3 185 34-223 4-208 (215)
47 PF10455 BAR_2: Bin/amphiphysi 97.5 0.0034 7.4E-08 65.5 16.3 140 83-227 145-285 (289)
48 KOG3771 Amphiphysin [Intracell 97.4 0.0052 1.1E-07 67.6 16.8 168 59-244 64-238 (460)
49 cd07630 BAR_SNX_like The Bin/A 97.4 0.032 6.9E-07 55.2 20.5 159 38-220 17-175 (198)
50 cd07588 BAR_Amphiphysin The Bi 97.4 0.02 4.4E-07 57.2 18.8 174 43-232 30-209 (211)
51 cd07609 BAR_SIP3_fungi The Bin 97.4 0.0077 1.7E-07 60.3 15.9 98 93-193 63-167 (214)
52 cd07605 I-BAR_IMD Inverse (I)- 97.4 0.022 4.8E-07 57.5 19.1 165 56-224 37-214 (223)
53 cd07628 BAR_Atg24p The Bin/Amp 97.3 0.046 1E-06 53.1 19.7 165 41-227 13-184 (185)
54 cd07660 BAR_Arfaptin The Bin/A 97.3 0.043 9.4E-07 55.0 19.8 179 40-225 10-197 (201)
55 cd07643 I-BAR_IMD_MIM Inverse 97.2 0.034 7.4E-07 56.8 18.7 172 56-234 39-225 (231)
56 cd00011 BAR_Arfaptin_like The 97.2 0.13 2.8E-06 51.8 22.0 183 33-225 3-200 (203)
57 cd07598 BAR_FAM92 The Bin/Amph 97.1 0.066 1.4E-06 53.5 19.5 183 41-229 13-202 (211)
58 cd07589 BAR_DNMBP The Bin/Amph 97.1 0.093 2E-06 51.3 19.9 148 59-229 39-192 (195)
59 cd07612 BAR_Bin2 The Bin/Amphi 97.0 0.078 1.7E-06 53.5 18.4 184 29-232 19-209 (211)
60 cd07621 BAR_SNX5_6 The Bin/Amp 96.9 0.13 2.8E-06 52.2 19.3 171 41-222 40-218 (219)
61 cd07664 BAR_SNX2 The Bin/Amphi 96.8 0.13 2.7E-06 52.3 18.5 180 41-228 38-232 (234)
62 cd07611 BAR_Amphiphysin_I_II T 96.8 0.12 2.7E-06 52.1 17.9 174 41-234 32-211 (211)
63 cd07608 BAR_ArfGAP_fungi The B 96.7 0.19 4.2E-06 50.2 18.9 170 43-228 16-191 (192)
64 KOG2273 Membrane coat complex 96.7 0.16 3.4E-06 55.5 19.3 196 32-228 274-497 (503)
65 cd07625 BAR_Vps17p The Bin/Amp 96.6 0.42 9E-06 48.8 20.2 179 42-228 35-230 (230)
66 cd07610 FCH_F-BAR The Extended 96.4 0.47 1E-05 44.4 18.0 165 41-217 16-184 (191)
67 cd07645 I-BAR_IMD_BAIAP2L1 Inv 96.2 0.077 1.7E-06 54.2 12.5 99 32-136 16-116 (226)
68 KOG1451 Oligophrenin-1 and rel 96.1 0.44 9.5E-06 54.7 19.1 209 32-244 27-240 (812)
69 cd07665 BAR_SNX1 The Bin/Amphi 96.0 0.74 1.6E-05 47.1 18.6 95 41-145 38-132 (234)
70 cd07629 BAR_Atg20p The Bin/Amp 95.9 1.9 4.1E-05 42.3 20.8 167 41-226 13-185 (187)
71 cd07622 BAR_SNX4 The Bin/Amphi 95.7 1.3 2.9E-05 43.9 18.4 174 38-228 19-199 (201)
72 cd07666 BAR_SNX7 The Bin/Amphi 95.6 1.9 4E-05 44.5 19.7 165 41-225 63-240 (243)
73 cd07662 BAR_SNX6 The Bin/Amphi 95.6 1.8 3.9E-05 44.3 19.2 180 32-222 30-217 (218)
74 PF13805 Pil1: Eisosome compon 95.6 0.79 1.7E-05 48.1 17.0 133 41-188 59-192 (271)
75 cd07667 BAR_SNX30 The Bin/Amph 95.5 0.88 1.9E-05 46.9 17.0 175 41-225 60-237 (240)
76 cd07650 F-BAR_Syp1p_like The F 95.5 1.5 3.3E-05 44.0 18.2 186 35-228 7-212 (228)
77 cd07663 BAR_SNX5 The Bin/Amphi 95.3 3 6.4E-05 42.6 19.6 187 32-222 22-217 (218)
78 smart00721 BAR BAR domain. 95.3 1.8 3.9E-05 41.6 17.4 119 86-206 98-217 (239)
79 cd07684 F-BAR_srGAP3 The F-BAR 95.1 4.1 8.8E-05 42.7 20.1 180 31-221 10-239 (253)
80 PF03114 BAR: BAR domain; Int 94.8 2.2 4.7E-05 39.7 16.0 156 58-220 66-226 (229)
81 cd07683 F-BAR_srGAP1 The F-BAR 94.8 4.5 9.8E-05 42.4 19.5 181 31-222 10-240 (253)
82 cd07644 I-BAR_IMD_BAIAP2L2 Inv 94.6 1.3 2.9E-05 45.2 14.9 102 31-138 15-117 (215)
83 cd07653 F-BAR_CIP4-like The F- 94.3 6.1 0.00013 39.2 20.0 56 89-148 90-145 (251)
84 PF12729 4HB_MCP_1: Four helix 93.7 3.6 7.7E-05 36.2 14.2 75 38-112 27-101 (181)
85 cd07657 F-BAR_Fes_Fer The F-BA 93.6 4.7 0.0001 41.0 16.7 143 30-185 9-177 (237)
86 cd07646 I-BAR_IMD_IRSp53 Inver 93.3 4.2 9.1E-05 42.1 15.9 97 36-138 22-119 (232)
87 cd07648 F-BAR_FCHO The F-BAR ( 93.3 7 0.00015 39.4 17.4 89 59-150 32-137 (261)
88 cd07307 BAR The Bin/Amphiphysi 93.3 5.9 0.00013 35.4 16.5 113 41-158 2-115 (194)
89 cd07597 BAR_SNX8 The Bin/Amphi 93.2 11 0.00023 38.5 18.6 132 26-159 16-167 (246)
90 cd07649 F-BAR_GAS7 The F-BAR ( 92.8 8.1 0.00018 39.3 17.1 65 59-126 32-96 (233)
91 KOG3725 SH3 domain protein SH3 92.0 4 8.6E-05 43.5 14.0 157 58-222 87-255 (375)
92 cd07674 F-BAR_FCHO1 The F-BAR 91.4 5.4 0.00012 40.7 14.0 31 43-73 57-87 (261)
93 cd07653 F-BAR_CIP4-like The F- 90.9 18 0.0004 35.9 17.9 102 41-150 21-140 (251)
94 KOG3876 Arfaptin and related p 90.8 25 0.00054 37.8 18.3 171 41-223 134-318 (341)
95 PHA02562 46 endonuclease subun 90.4 19 0.00041 39.4 17.9 80 40-124 214-297 (562)
96 cd07651 F-BAR_PombeCdc15_like 90.3 13 0.00027 37.1 15.2 89 59-150 32-135 (236)
97 cd07656 F-BAR_srGAP The F-BAR 88.9 30 0.00064 35.5 16.9 90 32-128 11-108 (241)
98 cd07626 BAR_SNX9_like The Bin/ 87.6 34 0.00073 34.5 20.7 171 32-224 3-194 (199)
99 PF15011 CK2S: Casein Kinase 2 86.8 26 0.00057 34.2 14.4 146 36-195 5-156 (168)
100 cd07686 F-BAR_Fer The F-BAR (F 86.8 20 0.00042 37.1 14.1 67 29-103 8-75 (234)
101 cd07658 F-BAR_NOSTRIN The F-BA 86.8 39 0.00084 34.4 19.0 74 57-131 30-103 (239)
102 cd07678 F-BAR_FCHSD1 The F-BAR 86.4 47 0.001 35.0 18.6 178 31-219 10-218 (263)
103 cd07676 F-BAR_FBP17 The F-BAR 85.3 49 0.0011 34.2 21.0 127 59-186 32-180 (253)
104 PF07361 Cytochrom_B562: Cytoc 84.4 30 0.00064 31.3 12.6 98 36-149 2-102 (103)
105 cd07655 F-BAR_PACSIN The F-BAR 83.9 55 0.0012 33.5 17.4 78 41-127 21-101 (258)
106 cd07598 BAR_FAM92 The Bin/Amph 83.8 53 0.0011 33.3 16.4 55 165-226 152-206 (211)
107 PF05816 TelA: Toxic anion res 83.3 11 0.00025 39.8 10.9 72 94-166 78-152 (333)
108 PF12128 DUF3584: Protein of u 82.9 74 0.0016 39.4 18.9 138 85-229 655-797 (1201)
109 cd07647 F-BAR_PSTPIP The F-BAR 82.2 51 0.0011 33.2 14.6 32 42-73 56-87 (239)
110 PF11985 DUF3486: Protein of u 82.0 51 0.0011 31.9 15.6 112 58-178 55-178 (180)
111 TIGR00634 recN DNA repair prot 80.8 66 0.0014 36.3 16.3 127 91-230 249-385 (563)
112 PF05791 Bacillus_HBL: Bacillu 80.8 40 0.00088 33.0 13.0 87 45-143 90-177 (184)
113 cd07600 BAR_Gvp36 The Bin/Amph 79.3 24 0.00052 36.5 11.4 125 70-213 103-232 (242)
114 cd07673 F-BAR_FCHO2 The F-BAR 77.2 86 0.0019 32.6 14.7 13 136-148 130-142 (269)
115 PF11887 DUF3407: Protein of u 77.1 38 0.00083 35.0 12.1 88 27-116 36-124 (267)
116 PF06160 EzrA: Septation ring 76.3 1.5E+02 0.0032 33.9 20.1 162 28-205 103-284 (560)
117 PF08397 IMD: IRSp53/MIM homol 74.9 57 0.0012 32.5 12.3 24 199-222 185-208 (219)
118 cd07661 BAR_ICA69 The Bin/Amph 74.5 1.1E+02 0.0024 31.6 18.1 175 41-225 11-200 (204)
119 cd07628 BAR_Atg24p The Bin/Amp 73.2 98 0.0021 30.4 13.3 43 167-216 138-180 (185)
120 KOG3130 Uncharacterized conser 72.6 38 0.00082 38.2 11.2 26 217-242 242-267 (514)
121 cd07605 I-BAR_IMD Inverse (I)- 71.6 1.2E+02 0.0026 31.3 13.9 46 31-77 22-71 (223)
122 cd07648 F-BAR_FCHO The F-BAR ( 71.5 1.2E+02 0.0026 30.7 14.5 70 132-217 153-222 (261)
123 PLN02413 choline-phosphate cyt 71.4 30 0.00065 37.2 9.9 104 145-248 166-281 (294)
124 KOG2129 Uncharacterized conser 69.2 2.2E+02 0.0047 32.7 16.9 141 29-181 146-304 (552)
125 cd07607 BAR_SH3P_plant The Bin 68.8 1.5E+02 0.0032 30.7 17.6 188 31-226 6-207 (209)
126 cd07680 F-BAR_PACSIN1 The F-BA 68.8 1.6E+02 0.0034 31.0 18.0 100 41-149 21-146 (258)
127 COG3853 TelA Uncharacterized p 68.1 91 0.002 34.8 12.9 76 50-132 63-143 (386)
128 smart00806 AIP3 Actin interact 67.9 1.9E+02 0.004 32.9 15.3 96 29-132 152-263 (426)
129 KOG3651 Protein kinase C, alph 67.6 2E+02 0.0044 31.8 19.5 203 39-254 139-370 (429)
130 cd07596 BAR_SNX The Bin/Amphip 66.4 1.2E+02 0.0026 28.6 16.8 59 41-99 20-80 (218)
131 PF12729 4HB_MCP_1: Four helix 66.4 92 0.002 27.4 15.1 118 102-236 54-173 (181)
132 PF10211 Ax_dynein_light: Axon 65.0 1.2E+02 0.0026 30.2 12.0 26 94-119 85-110 (189)
133 cd07652 F-BAR_Rgd1 The F-BAR ( 64.4 1.7E+02 0.0037 29.8 13.9 20 130-149 126-145 (234)
134 cd07593 BAR_MUG137_fungi The B 64.2 1.3E+02 0.0028 30.8 12.3 123 72-213 73-198 (215)
135 cd07654 F-BAR_FCHSD The F-BAR 63.5 2E+02 0.0043 30.2 19.9 39 35-80 14-53 (264)
136 cd07664 BAR_SNX2 The Bin/Amphi 63.1 1.8E+02 0.0039 30.0 13.2 21 130-150 167-187 (234)
137 PF05055 DUF677: Protein of un 60.9 90 0.002 34.0 11.1 46 66-116 30-78 (336)
138 TIGR02553 SipD_IpaD_SspD type 60.3 33 0.00072 37.1 7.7 79 29-113 101-181 (308)
139 cd07665 BAR_SNX1 The Bin/Amphi 59.6 2.2E+02 0.0048 29.5 13.4 45 64-109 77-121 (234)
140 PRK04778 septation ring format 59.1 3E+02 0.0066 31.4 15.4 73 39-114 355-428 (569)
141 KOG4302 Microtubule-associated 58.4 2.3E+02 0.0049 33.8 14.4 75 88-163 63-143 (660)
142 KOG2002 TPR-containing nuclear 58.0 1.1E+02 0.0025 37.7 12.2 122 31-155 662-801 (1018)
143 PF07200 Mod_r: Modifier of ru 58.0 1.3E+02 0.0028 27.9 10.4 25 130-155 125-149 (150)
144 PF15047 DUF4533: Protein of u 57.5 1.1E+02 0.0023 32.1 10.5 116 31-166 53-176 (225)
145 PF10168 Nup88: Nuclear pore c 57.0 4.1E+02 0.0089 31.8 18.9 101 92-193 602-709 (717)
146 PRK10869 recombination and rep 56.9 3.5E+02 0.0076 31.0 15.4 129 91-230 242-380 (553)
147 cd09238 V_Alix_like_1 Protein- 55.0 2E+02 0.0044 30.7 12.5 48 82-131 222-273 (339)
148 PF06511 IpaD: Invasion plasmi 54.5 14 0.00031 40.2 4.0 89 29-123 128-218 (337)
149 PRK04778 septation ring format 54.2 3.9E+02 0.0084 30.6 19.9 161 27-203 106-286 (569)
150 KOG4563 Cell cycle-regulated h 53.8 80 0.0017 35.3 9.4 117 29-165 39-157 (400)
151 PF07729 FCD: FCD domain; Int 52.4 1.3E+02 0.0028 24.9 8.6 39 39-79 24-62 (125)
152 COG3105 Uncharacterized protei 52.0 73 0.0016 31.1 7.8 67 67-149 6-83 (138)
153 KOG4151 Myosin assembly protei 51.4 1.4E+02 0.003 36.1 11.3 125 57-190 479-619 (748)
154 PF01442 Apolipoprotein: Apoli 51.3 1.9E+02 0.0042 26.3 13.7 11 41-51 69-79 (202)
155 KOG2561 Adaptor protein NUB1, 51.1 47 0.001 38.0 7.3 162 60-279 174-344 (568)
156 PF08317 Spc7: Spc7 kinetochor 49.9 1.7E+02 0.0038 31.0 11.0 53 1-56 120-173 (325)
157 cd07674 F-BAR_FCHO1 The F-BAR 49.2 3.2E+02 0.0068 28.1 18.7 64 59-126 32-95 (261)
158 PRK10869 recombination and rep 48.1 4.8E+02 0.01 30.0 17.2 20 84-103 206-225 (553)
159 PF06213 CobT: Cobalamin biosy 48.1 1.3E+02 0.0029 31.2 9.6 118 4-128 58-189 (282)
160 PF09325 Vps5: Vps5 C terminal 47.8 2.7E+02 0.0059 27.1 16.3 64 38-101 37-100 (236)
161 TIGR02956 TMAO_torS TMAO reduc 47.6 5.2E+02 0.011 30.2 18.0 53 98-150 195-248 (968)
162 PF14643 DUF4455: Domain of un 47.5 4.5E+02 0.0098 29.5 18.1 137 29-190 252-394 (473)
163 cd09236 V_AnPalA_UmRIM20_like 47.5 3.9E+02 0.0085 28.7 14.0 47 82-130 222-286 (353)
164 KOG1924 RhoA GTPase effector D 47.3 2.1E+02 0.0045 35.3 11.9 119 30-160 884-1018(1102)
165 PRK15330 cell invasion protein 47.2 49 0.0011 36.3 6.5 86 32-123 132-219 (343)
166 cd07657 F-BAR_Fes_Fer The F-BA 47.1 2E+02 0.0043 29.6 10.5 92 90-188 91-192 (237)
167 cd07610 FCH_F-BAR The Extended 47.0 2.5E+02 0.0055 26.4 11.0 67 43-116 54-120 (191)
168 COG1463 Ttg2C ABC-type transpo 45.9 2.5E+02 0.0054 30.1 11.5 94 29-125 183-277 (359)
169 TIGR00996 Mtu_fam_mce virulenc 45.8 3.4E+02 0.0074 27.6 12.8 32 85-116 229-260 (291)
170 PF08855 DUF1825: Domain of un 45.4 55 0.0012 30.7 5.7 51 96-146 8-58 (108)
171 cd07594 BAR_Endophilin_B The B 45.4 2.5E+02 0.0054 29.1 11.0 121 86-213 96-219 (229)
172 cd07624 BAR_SNX7_30 The Bin/Am 45.3 3.2E+02 0.0069 27.1 15.1 19 191-209 166-184 (200)
173 TIGR02833 spore_III_AB stage I 45.2 1.4E+02 0.0031 29.1 8.8 42 43-84 61-104 (170)
174 KOG3726 Uncharacterized conser 45.0 1.2E+02 0.0026 36.2 9.5 69 110-179 150-219 (717)
175 COG3853 TelA Uncharacterized p 44.8 3.4E+02 0.0073 30.6 12.5 117 33-157 63-189 (386)
176 PF04286 DUF445: Protein of un 44.7 3.6E+02 0.0078 27.6 13.7 35 44-79 140-174 (367)
177 COG4942 Membrane-bound metallo 44.2 5.3E+02 0.012 29.4 14.1 142 47-196 74-233 (420)
178 PRK10780 periplasmic chaperone 43.6 2.6E+02 0.0057 26.8 10.2 23 221-243 121-143 (165)
179 PF14227 UBN2_2: gag-polypepti 42.9 1.5E+02 0.0033 26.0 8.0 82 44-132 23-108 (119)
180 PF15642 Tox-ODYAM1: Toxin in 42.5 1.6E+02 0.0035 32.1 9.3 25 155-179 152-176 (385)
181 PRK04863 mukB cell division pr 42.4 9.1E+02 0.02 31.6 21.6 102 135-238 406-544 (1486)
182 PF03938 OmpH: Outer membrane 42.2 2.1E+02 0.0045 26.5 9.0 22 222-243 115-136 (158)
183 PF12252 SidE: Dot/Icm substra 42.2 6.6E+02 0.014 32.2 15.1 97 127-229 1198-1294(1439)
184 PF01442 Apolipoprotein: Apoli 42.0 2.7E+02 0.0059 25.3 13.6 20 131-150 135-154 (202)
185 PF04108 APG17: Autophagy prot 42.0 5.2E+02 0.011 28.6 14.3 46 120-168 323-370 (412)
186 cd07652 F-BAR_Rgd1 The F-BAR ( 42.0 3.9E+02 0.0086 27.2 16.4 70 60-130 33-104 (234)
187 smart00576 BTP Bromodomain tra 41.9 44 0.00096 28.4 4.3 50 27-76 25-75 (77)
188 PF14943 MRP-S26: Mitochondria 41.4 1.2E+02 0.0026 30.1 7.8 27 100-126 27-53 (170)
189 cd07675 F-BAR_FNBP1L The F-BAR 41.2 4.5E+02 0.0098 27.7 17.3 168 61-229 34-236 (252)
190 PRK00409 recombination and DNA 41.1 5.2E+02 0.011 31.1 14.1 29 84-112 500-528 (782)
191 cd07595 BAR_RhoGAP_Rich-like T 40.6 4.4E+02 0.0096 27.4 12.0 134 86-224 84-226 (244)
192 PF14223 UBN2: gag-polypeptide 40.3 1.6E+02 0.0036 25.8 7.8 72 59-137 40-115 (119)
193 cd07647 F-BAR_PSTPIP The F-BAR 40.2 4.1E+02 0.0088 26.9 17.1 56 59-117 32-87 (239)
194 PRK14471 F0F1 ATP synthase sub 40.1 1.4E+02 0.0031 28.2 7.8 42 110-151 30-71 (164)
195 PF03962 Mnd1: Mnd1 family; I 40.1 3.6E+02 0.0079 26.9 10.9 109 117-231 57-167 (188)
196 PF09731 Mitofilin: Mitochondr 40.0 5.7E+02 0.012 28.9 13.7 32 85-116 250-281 (582)
197 PF06260 DUF1024: Protein of u 39.9 69 0.0015 28.9 5.2 58 121-179 22-79 (82)
198 PF09787 Golgin_A5: Golgin sub 39.8 6.1E+02 0.013 28.8 16.5 25 168-192 276-300 (511)
199 PF07524 Bromo_TP: Bromodomain 38.8 55 0.0012 27.5 4.4 48 28-75 26-74 (77)
200 cd08915 V_Alix_like Protein-in 38.5 5E+02 0.011 27.4 16.4 60 58-118 191-264 (342)
201 PRK09470 cpxA two-component se 38.1 4.8E+02 0.01 27.1 15.3 66 60-125 192-262 (461)
202 PRK13454 F0F1 ATP synthase sub 36.6 1.5E+02 0.0034 28.9 7.6 39 113-151 56-94 (181)
203 PF03357 Snf7: Snf7; InterPro 36.4 1.6E+02 0.0034 27.1 7.3 15 219-233 84-98 (171)
204 PF10376 Mei5: Double-strand r 36.3 1.2E+02 0.0026 31.3 7.1 114 95-244 104-219 (221)
205 PF02601 Exonuc_VII_L: Exonucl 36.3 5.1E+02 0.011 26.9 14.7 53 22-77 129-182 (319)
206 PRK14472 F0F1 ATP synthase sub 36.1 1.8E+02 0.0039 28.0 7.9 40 111-150 41-80 (175)
207 cd07622 BAR_SNX4 The Bin/Amphi 35.7 4.7E+02 0.01 26.3 14.7 18 59-76 62-79 (201)
208 cd07676 F-BAR_FBP17 The F-BAR 35.7 5.3E+02 0.011 26.8 15.2 159 51-229 65-237 (253)
209 cd07592 BAR_Endophilin_A The B 35.7 5E+02 0.011 26.8 11.3 59 87-145 92-151 (223)
210 KOG3433 Protein involved in me 35.6 2.5E+02 0.0053 29.1 8.9 99 116-218 68-170 (203)
211 PF05879 RHD3: Root hair defec 35.4 8.6E+02 0.019 29.2 15.0 75 100-180 421-495 (742)
212 TIGR00634 recN DNA repair prot 35.1 7.3E+02 0.016 28.3 17.3 105 85-193 265-373 (563)
213 PF06524 NOA36: NOA36 protein; 35.1 31 0.00067 37.0 2.7 21 52-72 89-109 (314)
214 PRK13460 F0F1 ATP synthase sub 34.9 1.8E+02 0.0038 28.1 7.6 31 120-150 48-78 (173)
215 COG0497 RecN ATPase involved i 34.7 5.6E+02 0.012 30.2 12.6 22 87-108 270-291 (557)
216 CHL00118 atpG ATP synthase CF0 34.3 1.9E+02 0.0041 27.5 7.7 30 122-151 56-85 (156)
217 TIGR01069 mutS2 MutS2 family p 34.1 2.6E+02 0.0057 33.5 10.3 27 85-111 496-522 (771)
218 PF04740 LXG: LXG domain of WX 34.0 4.4E+02 0.0095 25.4 19.2 37 198-234 155-191 (204)
219 cd07616 BAR_Endophilin_B1 The 33.9 5.7E+02 0.012 26.7 11.5 118 87-214 97-220 (229)
220 cd07685 F-BAR_Fes The F-BAR (F 33.7 6.1E+02 0.013 27.0 12.8 76 90-179 95-171 (237)
221 PF06456 Arfaptin: Arfaptin-li 33.6 5.5E+02 0.012 26.5 13.7 122 26-149 34-157 (229)
222 cd07684 F-BAR_srGAP3 The F-BAR 33.4 6.3E+02 0.014 27.1 12.1 36 94-131 127-162 (253)
223 KOG2007 Cysteinyl-tRNA synthet 33.4 7.9E+02 0.017 29.1 13.3 21 101-121 434-454 (586)
224 PF02387 IncFII_repA: IncFII R 32.9 3.1E+02 0.0067 29.4 9.6 62 61-125 120-193 (281)
225 PF11348 DUF3150: Protein of u 32.8 5.3E+02 0.011 27.0 11.1 69 174-249 169-237 (257)
226 COG4477 EzrA Negative regulato 32.6 2E+02 0.0044 33.7 8.7 103 85-187 73-185 (570)
227 PF02259 FAT: FAT domain; Int 32.2 5.3E+02 0.012 25.8 11.9 95 84-197 247-341 (352)
228 PF05478 Prominin: Prominin; 32.0 8.2E+02 0.018 29.4 13.8 51 27-77 234-284 (806)
229 PF03915 AIP3: Actin interacti 31.9 2.1E+02 0.0047 32.2 8.7 85 31-123 150-246 (424)
230 TIGR02895 spore_sigI RNA polym 31.7 4.3E+02 0.0094 26.9 10.1 49 169-217 117-170 (218)
231 cd07683 F-BAR_srGAP1 The F-BAR 31.7 3.9E+02 0.0085 28.5 10.0 17 94-110 128-144 (253)
232 PF05149 Flagellar_rod: Parafl 31.7 7E+02 0.015 27.1 16.3 181 42-234 20-219 (289)
233 cd07649 F-BAR_GAS7 The F-BAR ( 31.4 6E+02 0.013 26.2 13.4 20 129-148 121-140 (233)
234 PRK08307 stage III sporulation 31.1 2.6E+02 0.0056 27.4 8.1 54 43-98 62-117 (171)
235 cd08915 V_Alix_like Protein-in 31.1 6.6E+02 0.014 26.6 13.5 24 164-188 242-265 (342)
236 PF04136 Sec34: Sec34-like fam 30.2 1.8E+02 0.0038 28.2 6.8 60 57-117 90-149 (157)
237 PRK12704 phosphodiesterase; Pr 30.2 1.1E+02 0.0024 34.9 6.2 78 130-211 118-204 (520)
238 PF03978 Borrelia_REV: Borreli 29.8 2.6E+02 0.0055 28.1 7.8 94 105-207 48-147 (160)
239 PF10037 MRP-S27: Mitochondria 29.8 8.4E+02 0.018 27.7 12.7 41 124-164 369-419 (429)
240 COG5391 Phox homology (PX) dom 29.5 9.5E+02 0.021 28.0 15.6 62 169-230 461-522 (524)
241 KOG0961 Predicted Zn2+-depende 29.4 5.3E+02 0.012 31.7 11.4 124 27-160 347-497 (1022)
242 PRK00106 hypothetical protein; 29.4 1.1E+02 0.0025 35.2 6.2 80 129-212 132-220 (535)
243 KOG3564 GTPase-activating prot 29.4 1E+03 0.022 28.2 13.6 136 100-271 6-159 (604)
244 cd07654 F-BAR_FCHSD The F-BAR 29.2 6.7E+02 0.014 26.4 11.2 21 199-219 199-219 (264)
245 PF14662 CCDC155: Coiled-coil 29.1 6.6E+02 0.014 26.0 13.1 78 27-105 30-114 (193)
246 COG5283 Phage-related tail pro 29.0 1.5E+02 0.0033 37.4 7.4 100 118-234 70-169 (1213)
247 COG2882 FliJ Flagellar biosynt 29.0 4.3E+02 0.0092 26.1 9.1 80 120-217 6-92 (148)
248 KOG0612 Rho-associated, coiled 28.9 1.4E+03 0.03 29.7 15.7 76 101-179 512-587 (1317)
249 cd07677 F-BAR_FCHSD2 The F-BAR 28.7 7.5E+02 0.016 26.5 15.4 81 130-219 132-215 (260)
250 TIGR01005 eps_transp_fam exopo 28.2 8.8E+02 0.019 28.4 13.0 27 130-156 377-403 (754)
251 COG3416 Uncharacterized protei 28.0 1.5E+02 0.0032 31.1 6.1 57 180-238 4-73 (233)
252 PF10154 DUF2362: Uncharacteri 27.9 5.8E+02 0.013 29.7 11.3 76 41-116 42-123 (510)
253 TIGR02289 M3_not_pepF oligoend 27.6 9.4E+02 0.02 27.3 13.1 55 58-115 25-80 (549)
254 PF05769 DUF837: Protein of un 27.6 6.4E+02 0.014 25.3 12.9 87 31-117 5-108 (181)
255 PRK13428 F0F1 ATP synthase sub 27.5 7.5E+02 0.016 27.8 11.9 146 28-180 38-189 (445)
256 PF00430 ATP-synt_B: ATP synth 27.5 4.4E+02 0.0095 23.4 8.8 42 109-150 20-61 (132)
257 PF10234 Cluap1: Clusterin-ass 27.5 6.4E+02 0.014 27.1 10.8 63 128-192 175-237 (267)
258 COG3206 GumC Uncharacterized p 27.3 7.4E+02 0.016 27.3 11.7 32 128-159 372-403 (458)
259 COG5124 Protein predicted to b 27.3 1.4E+02 0.003 30.8 5.7 61 102-163 49-115 (209)
260 PF00611 FCH: Fes/CIP4, and EF 27.1 3.6E+02 0.0077 22.2 10.4 66 41-113 25-91 (91)
261 PF02203 TarH: Tar ligand bind 27.1 4.8E+02 0.01 23.7 12.9 85 86-181 78-163 (171)
262 cd07678 F-BAR_FCHSD1 The F-BAR 27.1 6.5E+02 0.014 26.8 10.7 20 167-188 188-207 (263)
263 PF15003 HAUS2: HAUS augmin-li 26.9 3E+02 0.0065 29.7 8.3 110 122-242 47-166 (277)
264 PF05086 Dicty_REP: Dictyostel 26.8 1.2E+02 0.0025 36.9 5.8 51 196-255 846-898 (911)
265 PF09548 Spore_III_AB: Stage I 26.6 4E+02 0.0086 25.8 8.5 41 43-83 61-103 (170)
266 PRK05759 F0F1 ATP synthase sub 26.4 3.3E+02 0.0072 25.3 7.7 30 121-150 37-66 (156)
267 PRK01005 V-type ATP synthase s 26.1 3.3E+02 0.0071 27.7 8.1 103 98-217 6-113 (207)
268 PF09090 MIF4G_like_2: MIF4G l 26.1 6.9E+02 0.015 25.6 10.5 60 86-150 185-244 (253)
269 PF07464 ApoLp-III: Apolipopho 25.9 6.5E+02 0.014 24.8 10.1 99 130-235 49-154 (155)
270 PRK07353 F0F1 ATP synthase sub 25.8 3.5E+02 0.0077 24.7 7.7 25 126-150 43-67 (140)
271 cd07675 F-BAR_FNBP1L The F-BAR 25.7 8.1E+02 0.018 25.9 12.0 46 100-149 102-147 (252)
272 PF00038 Filament: Intermediat 25.6 7.5E+02 0.016 25.4 16.0 124 38-190 168-294 (312)
273 cd07682 F-BAR_srGAP2 The F-BAR 25.5 5.7E+02 0.012 27.5 10.0 97 46-145 72-228 (263)
274 KOG0243 Kinesin-like protein [ 25.3 1.5E+03 0.032 28.9 17.6 47 133-179 751-797 (1041)
275 KOG3270 Uncharacterized conser 25.1 67 0.0014 33.9 3.2 86 46-147 21-106 (244)
276 PF15294 Leu_zip: Leucine zipp 24.8 9.1E+02 0.02 26.2 12.6 130 67-225 8-154 (278)
277 cd07613 BAR_Endophilin_A1 The 24.8 8.1E+02 0.018 25.5 11.2 117 71-213 85-206 (223)
278 PF12889 DUF3829: Protein of u 24.5 7.1E+02 0.015 24.8 13.4 78 32-115 55-132 (276)
279 PF10136 SpecificRecomb: Site- 24.5 3.1E+02 0.0067 32.6 8.6 102 88-214 182-291 (643)
280 PRK07352 F0F1 ATP synthase sub 24.3 4.7E+02 0.01 25.1 8.5 30 121-150 52-81 (174)
281 PF07261 DnaB_2: Replication i 24.1 1.9E+02 0.0042 23.4 5.1 61 165-231 15-77 (77)
282 PRK10549 signal transduction h 24.1 8.5E+02 0.018 25.5 15.3 69 64-132 194-266 (466)
283 cd09237 V_ScBro1_like Protein- 24.0 9.2E+02 0.02 25.9 13.2 76 41-131 200-283 (356)
284 KOG4807 F-actin binding protei 24.0 1.1E+03 0.025 27.2 12.3 107 29-141 352-464 (593)
285 PF04652 DUF605: Vta1 like; I 23.6 5.9E+02 0.013 27.0 9.9 100 34-160 46-145 (380)
286 cd07590 BAR_Bin3 The Bin/Amphi 23.6 8.3E+02 0.018 25.3 13.9 14 135-148 121-134 (225)
287 PF09404 DUF2003: Eukaryotic p 23.5 6.9E+02 0.015 28.6 10.7 157 42-240 138-298 (447)
288 KOG4672 Uncharacterized conser 23.4 81 0.0018 35.8 3.6 49 232-283 224-272 (487)
289 KOG4100 Uncharacterized conser 23.3 3.3E+02 0.0071 26.4 7.0 66 101-177 29-96 (125)
290 cd07591 BAR_Rvs161p The Bin/Am 23.3 8.1E+02 0.018 25.0 17.1 48 169-224 144-191 (224)
291 KOG1265 Phospholipase C [Lipid 23.2 9.8E+02 0.021 30.3 12.3 124 88-217 1028-1164(1189)
292 PF15369 KIAA1328: Uncharacter 23.0 1.5E+02 0.0032 32.6 5.4 55 123-182 12-70 (328)
293 PRK13461 F0F1 ATP synthase sub 22.9 4.3E+02 0.0094 24.9 7.9 29 122-150 39-67 (159)
294 KOG0250 DNA repair protein RAD 22.7 1.7E+03 0.037 28.5 17.0 36 96-132 768-803 (1074)
295 PRK09174 F0F1 ATP synthase sub 22.7 3.8E+02 0.0083 27.1 7.8 37 115-151 80-116 (204)
296 COG3679 Regulatory protein inv 22.5 3.5E+02 0.0075 25.9 7.0 76 64-150 14-89 (118)
297 PF11887 DUF3407: Protein of u 21.8 6.9E+02 0.015 26.1 9.7 84 29-116 59-145 (267)
298 PRK09841 cryptic autophosphory 21.8 1.4E+03 0.03 27.1 14.5 26 129-154 370-395 (726)
299 PF14723 SSFA2_C: Sperm-specif 21.7 6.6E+02 0.014 25.8 9.1 63 127-190 103-169 (179)
300 KOG4368 Predicted RNA binding 21.7 5.6E+02 0.012 30.8 9.7 33 97-139 177-209 (757)
301 cd01048 Ferritin_like_AB2 Unch 21.4 1.7E+02 0.0038 27.2 4.9 54 48-101 72-126 (135)
302 PLN00047 photosystem II biogen 21.4 8.8E+02 0.019 26.4 10.5 41 109-149 212-252 (283)
303 PF05983 Med7: MED7 protein; 21.1 7.9E+02 0.017 24.1 9.9 24 133-157 135-158 (162)
304 PF06160 EzrA: Septation ring 21.1 1.3E+03 0.028 26.6 12.9 113 96-227 17-132 (560)
305 cd07667 BAR_SNX30 The Bin/Amph 20.7 1E+03 0.022 25.2 19.0 164 28-217 67-236 (240)
306 KOG3758 Uncharacterized conser 20.7 1.5E+03 0.033 27.3 17.2 190 38-241 84-317 (655)
307 KOG0163 Myosin class VI heavy 20.6 6.2E+02 0.013 31.5 9.9 133 35-181 836-976 (1259)
308 COG0497 RecN ATPase involved i 20.5 6.1E+02 0.013 29.9 9.7 35 84-119 260-294 (557)
309 PF15175 SPATA24: Spermatogene 20.4 1.2E+02 0.0026 30.1 3.7 42 127-168 36-77 (153)
310 PF09731 Mitofilin: Mitochondr 20.4 1.3E+03 0.028 26.2 15.4 11 169-179 367-377 (582)
311 KOG2818 Predicted undecaprenyl 20.4 86 0.0019 33.4 2.9 31 199-230 39-69 (263)
No 1
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=100.00 E-value=5e-57 Score=440.23 Aligned_cols=200 Identities=18% Similarity=0.375 Sum_probs=192.2
Q ss_pred chhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh-hhhhhcccCCchhhhHHHHHHHhHHHHHHH
Q 006738 27 PLAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGA-CLLEKTALNDNEESGKVLLMLGKVQFELQK 104 (633)
Q Consensus 27 p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGs-cll~kta~~dd~e~g~v~l~lgk~q~EL~k 104 (633)
.+.+|||.++.+|. |++|||.+++|+++|.+|+++...|+++|++||+ || ++||+++|++|+|||++++||++
T Consensus 3 ~~~~~ee~l~~d~~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l-----~~dd~~~~~~l~kf~~~~~El~~ 77 (215)
T cd07642 3 TVVAIEEALDVDRTVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSNCV-----CRDDPDLGSAFLKFSVFTKELTA 77 (215)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCcHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999 9999999999999999999999999999999999 66 67899999999999999999999
Q ss_pred HHHHHHHHhhhhccCCcHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc---------HHHHHH
Q 006738 105 LVDAYRSHIFQTITIPSESLLN-ELQTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFS---------LQQLQE 173 (633)
Q Consensus 105 L~d~yr~nI~~tIt~PsESLLk-eLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i---------~eqle~ 173 (633)
|+++|++||+|||++|++|||| |||+|+ |||||||++|++||+|+. ++||+++|++|++++| .++|++
T Consensus 78 l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~-k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~ 156 (215)
T cd07642 78 LFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVT-KIEKEKKEHAKMHGMIRTEISGAEIAEEMEK 156 (215)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccccchhccchhhHHHHHHH
Confidence 9999999999999999999999 999997 999999999999999998 9999999999999998 489999
Q ss_pred HHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHH
Q 006738 174 AHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMV 232 (633)
Q Consensus 174 ~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~l 232 (633)
+|+.||.++..|+|+|++||+||+++|||++++|||||++||++|||+||+|+|||++|
T Consensus 157 ~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~~l 215 (215)
T cd07642 157 ERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999977777777778999999999999999999999999999999999999999875
No 2
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=100.00 E-value=3.8e-51 Score=396.22 Aligned_cols=199 Identities=20% Similarity=0.304 Sum_probs=194.1
Q ss_pred chhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHH
Q 006738 27 PLAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKL 105 (633)
Q Consensus 27 p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL 105 (633)
.+++|||.++.+|. |++|||.+++++++|.+||.|.+.|+|+||+||+..| ..|+.|+|++||+|++|++||.+|
T Consensus 3 tv~~lee~le~d~~~L~k~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l----~~~~~~~~t~fl~~av~tkel~al 78 (213)
T cd07640 3 TAAALEESLEGDQASLQRIKKIVKAIHNSGLNHVENEEQYTEALENLGNSHL----SQNNHELSTGFLNLAVFTREVTAL 78 (213)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhh----cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999 9999999999999999999999999999999999999 457899999999999999999999
Q ss_pred HHHHHHHhhhhccCCcHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccH-------HHHHHHHH
Q 006738 106 VDAYRSHIFQTITIPSESLLN-ELQTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSL-------QQLQEAHD 176 (633)
Q Consensus 106 ~d~yr~nI~~tIt~PsESLLk-eLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~-------eqle~~r~ 176 (633)
|+|++||++|||+||++++|| |||.|+ |+||+||+.|++||+++. ++||+++...|++|||| +.|+++|+
T Consensus 79 ~k~L~qn~nniv~fpldsflK~dlr~~K~D~KK~FeK~skDyE~kl~-K~ak~~r~k~~~~g~~~~e~eEaae~l~~eRr 157 (213)
T cd07640 79 FKNLVQNLNNIVSFPLDSLLKGQLRDGRLESKKQMEKAWKDYEAKIG-KLEKERREKQKQHGLIRLDMTDTAEDMQRERR 157 (213)
T ss_pred HHHHHHhhhhhhccchHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHH-HHhccccccchhcccccccHHHHHHHHHHHHH
Confidence 999999999999999999999 999999 999999999999999998 99999999999999995 99999999
Q ss_pred hhHhhHhHHHHHHh--hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHH
Q 006738 177 EYDQEATLFVFRLK--SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMV 232 (633)
Q Consensus 177 ~fqEeaqmc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~l 232 (633)
.|| ++||+|.|| +|+.+|+.++||.+++|||||++||++|++.+|.|.|+|+.|
T Consensus 158 ~Fq--l~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyik~l 213 (213)
T cd07640 158 NFQ--LHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFIEKL 213 (213)
T ss_pred HHH--HHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 999 999999999 999999999999999999999999999999999999999864
No 3
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=100.00 E-value=3.2e-44 Score=349.52 Aligned_cols=201 Identities=19% Similarity=0.331 Sum_probs=189.6
Q ss_pred chhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHH
Q 006738 27 PLAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKL 105 (633)
Q Consensus 27 p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL 105 (633)
-+.+|||.++.+++ +++|+|.+++|+.+|-+++.+.-+|+++|++||.|++ .+||+++|.+|++||++++||.++
T Consensus 3 ~v~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~----~~~~~~i~~~l~kF~~~l~El~~~ 78 (215)
T cd07604 3 TVGALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKAL----SREEEDLGAAFLKFSVFTKELAAL 78 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccc----CcccHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999 9999999999999999999999999999999999998 446778999999999999999999
Q ss_pred HHHHHHHhhhhccCCcHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc---------HHHHHHH
Q 006738 106 VDAYRSHIFQTITIPSESLLN-ELQTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFS---------LQQLQEA 174 (633)
Q Consensus 106 ~d~yr~nI~~tIt~PsESLLk-eLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i---------~eqle~~ 174 (633)
++.|++||+++|++|+++++| ||++|+ ||||+||++|++||.+.+ ++||+|++.+|.+||| .+||+++
T Consensus 79 ~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~-k~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~ 157 (215)
T cd07604 79 FKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKAS-KIEKEKKQLAKEAGMIRTEITGAEIAEEMEKE 157 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHhccchhhhhhhhcchhhhhhhHHHHHHHH
Confidence 999999999999999999999 699997 999999999999999986 9999999999999884 4999999
Q ss_pred HHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHH
Q 006738 175 HDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMV 232 (633)
Q Consensus 175 r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~l 232 (633)
|+.||+++.-++|+|++|+.+|..+||+++++||+||++||++|++++|+++||++.|
T Consensus 158 R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~~~L 215 (215)
T cd07604 158 RRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 9999966666666777999999999999999999999999999999999999999864
No 4
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=100.00 E-value=8.3e-44 Score=347.18 Aligned_cols=199 Identities=16% Similarity=0.322 Sum_probs=193.9
Q ss_pred chhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHH
Q 006738 27 PLAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKL 105 (633)
Q Consensus 27 p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL 105 (633)
.+++|||.++.++. |++|+|.+++|+++|.+|+++...|+++|++||...| ..||.++|.+|++|+++++||.++
T Consensus 3 tv~~~ee~l~~~e~~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~----~~dd~~i~~a~~kfs~~~~El~~~ 78 (215)
T cd07641 3 TVNVLEEALDQDRTALQKVKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFL----SRDNPDLGTAFVKFSTLTKELSTL 78 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cCCchhHHHHHHHHHHHHHHHHHH
Confidence 57899999999999 9999999999999999999999999999999999998 567899999999999999999999
Q ss_pred HHHHHHHhhhhccCCcHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccH---------HHHHHH
Q 006738 106 VDAYRSHIFQTITIPSESLLN-ELQTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSL---------QQLQEA 174 (633)
Q Consensus 106 ~d~yr~nI~~tIt~PsESLLk-eLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~---------eqle~~ 174 (633)
++++.+|++|+|+||++++|| |||.|+ |+||+||+.|++||+++. ++||++++.+|.++++| ++|+++
T Consensus 79 ~k~L~~~~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~-K~ek~~r~~~K~~e~~r~e~~~~Eaa~~l~~~ 157 (215)
T cd07641 79 LKNLLQGLSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFT-KIEKEKREHAKQHGMIRTEITGAEIAEEMEKE 157 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHH-HHHhhhhhhcCcccchhccccchhHHHHHHHH
Confidence 999999999999999999999 999999 999999999999999998 99999999999999995 789999
Q ss_pred HHhhHhhHhHHHHHHh--hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHH
Q 006738 175 HDEYDQEATLFVFRLK--SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMV 232 (633)
Q Consensus 175 r~~fqEeaqmc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~l 232 (633)
|+.|| .+||+|.|| .|+.+|+.+||+.+++||+||++||++|++.+|.|+|+|++|
T Consensus 158 Rr~Fq--~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~k~l 215 (215)
T cd07641 158 RRLFQ--LQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYIEKL 215 (215)
T ss_pred HHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999 999999999 999999999999999999999999999999999999999875
No 5
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.92 E-value=2.4e-24 Score=208.18 Aligned_cols=190 Identities=14% Similarity=0.249 Sum_probs=168.9
Q ss_pred hhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHH
Q 006738 29 AQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVD 107 (633)
Q Consensus 29 a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d 107 (633)
...|.-++-..+ +.+|.|.+++|+.+|-+++++...|+.+|++||.++ .||+.+|.+|..||.+-.||..+..
T Consensus 5 ~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~------~~d~~i~~~l~kF~~~l~el~~~~~ 78 (200)
T cd07603 5 EQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYF------RDDSLVQNCLNKFIQALQEMNNFHT 78 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666 999999999999999999999999999999999975 4678999999999999999999999
Q ss_pred HHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccccCCCCccccHHHHHHHHHhhHhhHhH
Q 006738 108 AYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQ--REKGRSKNGKGETFSLQQLQEAHDEYDQEATL 184 (633)
Q Consensus 108 ~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~--~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqm 184 (633)
.+.+++.++|++|+++++| ||+.|+|+||.||+.|++|+..+.++ ..|.| .+...|. .+||..+|+.|+ -++
T Consensus 79 ~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K-~~~~~Ea--~~~L~~~Rk~f~--~~s 153 (200)
T cd07603 79 ILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSK-PQEAEEA--TNILTATRSCFR--HTA 153 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-HHHHHHH--HHHHHHHHHHHH--HHH
Confidence 9999999999999999999 99999999999999999999998742 34433 2222221 389999999999 889
Q ss_pred HHHHHh--hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHH
Q 006738 185 FVFRLK--SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHV 229 (633)
Q Consensus 185 c~frLK--sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephV 229 (633)
|.|-++ +|..+|..++|+-+..|.+||++||++|+..++.++|++
T Consensus 154 ldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~py~ 200 (200)
T cd07603 154 LDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLEPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCcC
Confidence 999877 999999999999999999999999999999999999974
No 6
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=99.90 E-value=1.1e-22 Score=198.84 Aligned_cols=193 Identities=12% Similarity=0.185 Sum_probs=170.7
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHH
Q 006738 32 DELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRS 111 (633)
Q Consensus 32 dEl~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~ 111 (633)
.||-++-+-+.++=|.+.+|+.|+-+.....-.|+++|++||..++.....+|+--++.+|..|+++-.||....+.+.+
T Consensus 9 ~~l~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~ 88 (207)
T cd07634 9 IELERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQ 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888899999999999999999999999999999999998885433333336999999999999999999999999
Q ss_pred HhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccH--HHHHHHHHhhHhhHhHHHHH
Q 006738 112 HIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSL--QQLQEAHDEYDQEATLFVFR 188 (633)
Q Consensus 112 nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~--eqle~~r~~fqEeaqmc~fr 188 (633)
|+.++|..||++++| +|+.|+|.||+||+.|++|+..+ .+...-+++.|...+.. ++|+.+|+.|+ .++|.|-
T Consensus 89 ~~~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~al--eK~l~l~~~kk~~~~~ea~~~l~~~R~~F~--~~~ldYv 164 (207)
T cd07634 89 NANDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSIL--EKHLNLSAKKKESHLQRADTQIDREHQNFY--EASLEYV 164 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHH--HHHHhccccCCccHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 999999999999999 99999999999999999999976 33334444444444333 99999999999 9999999
Q ss_pred Hh--hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchH
Q 006738 189 LK--SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPH 228 (633)
Q Consensus 189 LK--sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~leph 228 (633)
++ +|..+|..++|+.+..+++||++||+.|+..++.++|+
T Consensus 165 ~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~py 206 (207)
T cd07634 165 FKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAPY 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCC
Confidence 88 99999999999999999999999999999999999986
No 7
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.89 E-value=4.3e-22 Score=193.67 Aligned_cols=189 Identities=11% Similarity=0.134 Sum_probs=168.2
Q ss_pred hHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHH
Q 006738 30 QLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDA 108 (633)
Q Consensus 30 ~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~ 108 (633)
.+|.-++-..+ +.+|.|.+++|+.+|-+++.+...|+++|+++|.. ..+|+.+|.+|.+|+.+-.||....+.
T Consensus 6 ~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~------~~~D~~i~~~l~kFs~~l~ei~~~~~~ 79 (200)
T cd07639 6 EVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHH------GPKDPMMAECLEKFSDGLNHILDSHAE 79 (200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455 99999999999999999999999999999999882 345788999999999999999999999
Q ss_pred HHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc--HHHHHHHHHhhHhhHhHH
Q 006738 109 YRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFS--LQQLQEAHDEYDQEATLF 185 (633)
Q Consensus 109 yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i--~eqle~~r~~fqEeaqmc 185 (633)
+..|+.++|..||++++| ||+.|+|.||.||+.|++||..+. +..+.+++ |..-+. .++|.++|+.|+ -++|
T Consensus 80 Ll~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~-K~~~~~k~--k~~e~~Ea~~~l~~~R~~F~--~~~l 154 (200)
T cd07639 80 LLEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQ-HNAETPRR--KAQEVEEAAAALLGARATFR--DRAL 154 (200)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHH-HHhhcccc--chHHHHHHHHHHHHHHHHHH--HHHH
Confidence 999999999999999999 999999999999999999999987 77776644 443322 269999999999 8999
Q ss_pred HHHHh--hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHH
Q 006738 186 VFRLK--SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHV 229 (633)
Q Consensus 186 ~frLK--sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephV 229 (633)
.|-++ .|..+|..++|+-+..+.+||+.||++|+..++.++|++
T Consensus 155 dYV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~~y~ 200 (200)
T cd07639 155 DYALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALHQYR 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99988 999999999999999999999999999999999999973
No 8
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.87 E-value=3.7e-21 Score=186.90 Aligned_cols=188 Identities=19% Similarity=0.268 Sum_probs=166.6
Q ss_pred hhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhh----hHHHHHHHhHHHHH
Q 006738 28 LAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEES----GKVLLMLGKVQFEL 102 (633)
Q Consensus 28 ~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~----g~v~l~lgk~q~EL 102 (633)
+..+||-++..++ +.+|-|.+..++.++-++..+.-.|+++|+++|.+ .||+.+ |.+|..|+.+-.||
T Consensus 3 i~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~-------~dD~~~~a~gg~~l~kF~~~l~ei 75 (202)
T cd07606 3 LQELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGG-------HDDPISVAVGGPVMTKFTSALREI 75 (202)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCChHHHhccchHHHHHHHHHHHH
Confidence 4678899999999 99999999999999999989999999999999832 456666 47999999999999
Q ss_pred HHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccccCCCCccc--cHHHHHHHHHh
Q 006738 103 QKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMR--QREKGRSKNGKGETF--SLQQLQEAHDE 177 (633)
Q Consensus 103 ~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~--~~EKgr~k~~K~e~~--i~eqle~~r~~ 177 (633)
....+.+++++.++|++|+++++| ||+.|+|.||+||+.|++||.-+.. ++.|++ |.+-+ ..++|.++|+.
T Consensus 76 ~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~----k~~~~~ea~~~l~~~R~~ 151 (202)
T cd07606 76 GSYKEVLRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDA----KPEILAAAEEDLGTTRSA 151 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----chHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999995542 444432 22222 25999999999
Q ss_pred hHhhHhHHHHHHh--hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchH
Q 006738 178 YDQEATLFVFRLK--SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPH 228 (633)
Q Consensus 178 fqEeaqmc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~leph 228 (633)
|+ .++|.|-++ .|..+|..++|.-+..+.+||++||++|+..+..++|+
T Consensus 152 F~--~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~py 202 (202)
T cd07606 152 FE--TARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLEPY 202 (202)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99 899999887 99999999999999999999999999999999999985
No 9
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.86 E-value=2e-20 Score=183.64 Aligned_cols=201 Identities=16% Similarity=0.174 Sum_probs=170.5
Q ss_pred hHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHH
Q 006738 30 QLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDA 108 (633)
Q Consensus 30 ~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~ 108 (633)
.+|+=+..-.+ +.++-+.+.+|+.++-+.....-.|+.+|.+++..=.+ ...||+.++.+|.+|+.+-.||......
T Consensus 6 ~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~--~~~dDe~~~~~l~kFs~~l~El~~~~~~ 83 (215)
T cd07601 6 VFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFE--LGRDDEILVSTLKQFSKVVDELSTMHST 83 (215)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555 88888888888888888888888999999999754111 1478999999999999999999999999
Q ss_pred HHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccccCCCCccccHHHHHHHHHhhHhhHhHH
Q 006738 109 YRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMR--QREKGRSKNGKGETFSLQQLQEAHDEYDQEATLF 185 (633)
Q Consensus 109 yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~--~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc 185 (633)
+++|+.++|++||+.++| ||+.|+|+||.||+.|++||..+.. ++.| ++++.+...=+.++|..+|+.|+ .++|
T Consensus 84 L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k-~k~~~~~~~Ea~~~l~~~R~~F~--~~~l 160 (215)
T cd07601 84 LSSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSK-KRENTKVKIEVNDEVYACRKKQH--QTAM 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCc-CCCchHHHHHHHHHHHHHHHHHH--HHHH
Confidence 999999999999999999 9999999999999999999996653 3344 22344431224699999999999 9999
Q ss_pred HHHHh--hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhh-ccchHHHHHHhh
Q 006738 186 VFRLK--SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLE-AVDPHVKMVAEQ 235 (633)
Q Consensus 186 ~frLK--sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE-~lephVk~lae~ 235 (633)
.|-++ .|..+|..++|.-+..+.+||++||+.|.-.+. .++|+++.|...
T Consensus 161 dYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~~~v~~~ 213 (215)
T cd07601 161 NYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFLSDINTS 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99988 999999999999999999999999999999996 999999988654
No 10
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.84 E-value=1.9e-19 Score=159.01 Aligned_cols=183 Identities=25% Similarity=0.331 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P 120 (633)
+.++-+..++++.+.-....+...|+++|.++|.++... .+.+.|.++..||.+.+||..+++.|.++|.+.|..|
T Consensus 9 ~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~----~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~p 84 (194)
T cd07307 9 LKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDL----SNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIEP 84 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666669999999999999998632 2237899999999999999999999999999999999
Q ss_pred cHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc--cccHHHHHHHHHhhHhhHhHHHHHHhhhccCCc
Q 006738 121 SESLL-NELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGE--TFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQS 197 (633)
Q Consensus 121 sESLL-keLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e--~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~ 197 (633)
++.++ ++++.+++++|.||++|.+||.++. +.++-+.+..+.. .-..++++.+++.|+.-...+...|..+..++.
T Consensus 85 L~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~-k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~ 163 (194)
T cd07307 85 LKEYLKKDLKEIKKRRKKLDKARLDYDAARE-KLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRK 163 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 5999999999999999999999987 5555544432222 234499999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccchH
Q 006738 198 RSLLTQAARHHAAQLSFVKKALKSLEAVDPH 228 (633)
Q Consensus 198 rsLLtqaaRhhaAQl~fF~~GLKsLE~leph 228 (633)
.+++..+..+..+|+.||++|++.++.+.||
T Consensus 164 ~~~~~~L~~~~~~q~~~~~~~~~~~~~l~~~ 194 (194)
T cd07307 164 ELFLSLLLSFIEAQSEFFKEVLKILEQLLPY 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhcCC
Confidence 8888888888899999999999999999875
No 11
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=99.81 E-value=6.1e-19 Score=198.44 Aligned_cols=202 Identities=21% Similarity=0.289 Sum_probs=181.5
Q ss_pred chhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHH
Q 006738 27 PLAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKL 105 (633)
Q Consensus 27 p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL 105 (633)
....++|-+..... +.+|.+.+-+++.++-+++++.++|...+.++ +-+ ..|++..|.+|.+|.+|..|+-++
T Consensus 22 ~~~~~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~~~~d~--~~~----~~~~~~~~~~l~~fs~~~~e~~~~ 95 (785)
T KOG0521|consen 22 TLDVFEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGKGLKDL--FSL----GQDEEVISETLQKFSKVLRELGTY 95 (785)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH--HHh----ccCchhhhhHHHHHHHHHHHHHHH
Confidence 44555666666666 99999999999999999999999999999999 222 267899999999999999999999
Q ss_pred HHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-CCCccccHHHHHHHHHhhHhhHh
Q 006738 106 VDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKN-GKGETFSLQQLQEAHDEYDQEAT 183 (633)
Q Consensus 106 ~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~-~K~e~~i~eqle~~r~~fqEeaq 183 (633)
++.|++++.++|.+|+.++.| ||+.|++.|++||++|++|+..+. +..+-+++. .|...-..++|.++|+.|| .+
T Consensus 96 ~~~L~~q~~~~~~~~l~~f~k~dl~~v~~~kk~f~ka~~~~d~a~~-k~~~l~k~~~~~~~~e~~~~l~~~r~~f~--~~ 172 (785)
T KOG0521|consen 96 HTELRSQLAHTLSLPLSQFVKGDLHEVKELKKLFEKASEEYDLALV-KYSRLPKKRRSKVKTEVEEELAAARRKFQ--LT 172 (785)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHhhHHHHHH-HhhhhhhccccchhHHHHHHHHHHHHHHH--HH
Confidence 999999999999999999999 999999999999999999999987 666665555 6655556689999999999 99
Q ss_pred HHHHHHh--hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHhhhh
Q 006738 184 LFVFRLK--SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQH 237 (633)
Q Consensus 184 mc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae~~h 237 (633)
+|.|-+. .+..+|...+|+-+..+.+||.+||++|...++.++|+++.|+...|
T Consensus 173 ~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~~l~~~m~p~~~~i~~~v~ 228 (785)
T KOG0521|consen 173 ALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQGEDLLSQMDPYIKKVATYVQ 228 (785)
T ss_pred HHHHHHhhhhhhcccchHHHHHHHHHHHhccchhcccHhHHhhhhHHHHHHHHHHH
Confidence 9999988 99999999999999999999999999999999999999999987665
No 12
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.74 E-value=1.2e-16 Score=155.26 Aligned_cols=189 Identities=15% Similarity=0.208 Sum_probs=162.3
Q ss_pred hHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHH
Q 006738 30 QLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDA 108 (633)
Q Consensus 30 ~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~ 108 (633)
.+|.-++--.+ +.+|-|.++.|+.+|=++.++.-.|+-+|.+++.+.. +|+.+..+|-.||.+-.|+......
T Consensus 6 ~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~------gd~~i~~~L~kF~~~l~ei~~~~~~ 79 (200)
T cd07637 6 EVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCK------KDEMISECLDKFGDSLQEMVNYHMI 79 (200)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455 9999999999999999999999999999999998764 4778999999999999999999999
Q ss_pred HHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc--HHHHHHHHHhhHhhHhHH
Q 006738 109 YRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFS--LQQLQEAHDEYDQEATLF 185 (633)
Q Consensus 109 yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i--~eqle~~r~~fqEeaqmc 185 (633)
+..++..+|..|+++++| ||+.|+|.||.||+.|+.|+..+.+ . ...+..|..-+. .+||..+|+.|+ -+.|
T Consensus 80 l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k-~--~~~k~kk~~~l~Ea~~~L~~~Rk~f~--~asL 154 (200)
T cd07637 80 LFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVK-N--AQAPRHKPHEVEEATSTLTITRKCFR--HLAL 154 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-H--hhcCCCChHHHHHHHHHHHHHHHHHH--HHHH
Confidence 999999999999999999 9999999999999999999999863 2 222222222221 289999999999 5666
Q ss_pred HHHHh--hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHH
Q 006738 186 VFRLK--SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHV 229 (633)
Q Consensus 186 ~frLK--sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephV 229 (633)
.|-++ +|..+|..++|.-+..+.+||++||++|...++.++|++
T Consensus 155 dyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~py~ 200 (200)
T cd07637 155 DYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 66655 999999999999999999999999999999999999984
No 13
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.70 E-value=3.8e-15 Score=136.53 Aligned_cols=188 Identities=21% Similarity=0.276 Sum_probs=153.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-------HHhhhhhhhcccC-CchhhhHHHHHHHhHHHHHHHHHHHHH
Q 006738 39 QDMQDMRGCYDSLLSAAAATANSAYEFSESLQ-------ELGACLLEKTALN-DNEESGKVLLMLGKVQFELQKLVDAYR 110 (633)
Q Consensus 39 qdm~~Mk~~ydsllsaaaa~~ns~yefsEale-------emGscll~kta~~-dd~e~g~v~l~lgk~q~EL~kL~d~yr 110 (633)
+.+..+++++..|+...-++..+...+..+.. +||.||.+-..-. ++...|.++.++|.+..+|....+.|.
T Consensus 33 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 112 (229)
T PF03114_consen 33 EKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSSLGNALEKFGEAMQEIEEARKELE 112 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33555555565555555555555555555554 7777776442222 334479999999999999999999999
Q ss_pred HHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHh
Q 006738 111 SHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLK 190 (633)
Q Consensus 111 ~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLK 190 (633)
..|..+|..|++.++++++.++++++.++++|-+||.... +.+|.+.+..|... .++++.++..|+.....+.-.|-
T Consensus 113 ~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~-k~~k~~~~~~~~~~--~~~l~~a~~~f~~~~~~l~~~l~ 189 (229)
T PF03114_consen 113 SQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARS-KLEKLRKKKSKSSK--EEKLEEAKEEFEALNEELKEELP 189 (229)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCHTTSSBTHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhccccc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887 88888877776655 89999999999988888888888
Q ss_pred hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHH
Q 006738 191 SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHV 229 (633)
Q Consensus 191 sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephV 229 (633)
.|-..+..-|...+..+..+|+.||+.++..|+.+.|.+
T Consensus 190 ~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l 228 (229)
T PF03114_consen 190 KLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQL 228 (229)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888777644559999999999999999999999999876
No 14
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=99.58 E-value=1.1e-13 Score=136.09 Aligned_cols=194 Identities=12% Similarity=0.194 Sum_probs=165.7
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHH
Q 006738 33 ELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSH 112 (633)
Q Consensus 33 El~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~n 112 (633)
||-...+-+.+|=|.+.+|+.++-......-.|+++|++|+-.+..-+..+|+--+|..|-.|+++..||..--+-+++|
T Consensus 10 ~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~ 89 (207)
T cd07635 10 ELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALN 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888999999999999999999999999999999999766533222233345799999999999999999999999
Q ss_pred hhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHH
Q 006738 113 IFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMR--QREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRL 189 (633)
Q Consensus 113 I~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~--~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frL 189 (633)
+...|..|++..+| +|+.|+|.||.||+..++|+..+.+ ..-+.|++.-+.|. .++|...|+.|++.+-=-++.|
T Consensus 90 ~~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~EA--~~~l~~~r~~F~~~sLdYv~qi 167 (207)
T cd07635 90 VTETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQLQEA--DVQVEQNRQHFYELSLEYVCKL 167 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999998864 23344444444443 4899999999996655556666
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchH
Q 006738 190 KSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPH 228 (633)
Q Consensus 190 KsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~leph 228 (633)
-.|..+|--++|.-+..+.+||..||+.|.-.++.++|+
T Consensus 168 n~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~~y 206 (207)
T cd07635 168 QEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFNHY 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 799999999999999999999999999999999999986
No 15
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.55 E-value=3.8e-13 Score=131.44 Aligned_cols=192 Identities=13% Similarity=0.192 Sum_probs=162.1
Q ss_pred hhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHH
Q 006738 28 LAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLV 106 (633)
Q Consensus 28 ~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~ 106 (633)
+..+|+-++.-.+ +.+|=+.+..++.++-++++....|+.+|.+++. ...||+.+|.+|-+|+.+=.||....
T Consensus 4 i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~------~~~~De~i~~~l~kF~~~l~ei~~~~ 77 (200)
T cd07638 4 LEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQ------YSSKDAVIETSLTKFSDTLQEMINYH 77 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH------hCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 4556777777777 8888889999999999999999999999999975 13567799999999999999999999
Q ss_pred HHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccH---HHHHHHHHhhHhhH
Q 006738 107 DAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSL---QQLQEAHDEYDQEA 182 (633)
Q Consensus 107 d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~---eqle~~r~~fqEea 182 (633)
.-++.++..+|..|++..+| ||+.|+|.||.||+..+.|+.-+.. --+-. ..| +.-.. ++|..+|+-|++-+
T Consensus 78 ~~L~~q~~~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K-~~~~~--k~k-~~e~eEa~~~l~~~r~~F~~~~ 153 (200)
T cd07638 78 TILFDQAQRSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVK-NAQVQ--RNK-QHEVEEATNILTATRKCFRHIA 153 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH-hccCC--cCc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999988752 11111 112 33333 58999999999444
Q ss_pred hHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHH
Q 006738 183 TLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHV 229 (633)
Q Consensus 183 qmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephV 229 (633)
-=.++-|..|..+|--.+|.-+..+.+||..||+.|.-.+..++|++
T Consensus 154 ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~py~ 200 (200)
T cd07638 154 LDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELGPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 44445566999999999999999999999999999999999999984
No 16
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=99.55 E-value=2.9e-13 Score=133.03 Aligned_cols=190 Identities=15% Similarity=0.228 Sum_probs=161.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhc
Q 006738 38 SQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTI 117 (633)
Q Consensus 38 ~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tI 117 (633)
-+-+.++=|.+++|+.++-+.....-.|+.+|++++-.++--+..+|+..++.+|-.||.+=.||....+-+..++...|
T Consensus 15 ~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l 94 (207)
T cd07602 15 NKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLENAEEQL 94 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33388999999999999999999999999999999976654433445556899999999999999999999999999999
Q ss_pred cCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhcc
Q 006738 118 TIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQR--EKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQ 194 (633)
Q Consensus 118 t~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~--EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKq 194 (633)
..|++...| +|+.|+|.||.||+..+.|+..+.+.. =|.|+.+-..+. .++|..+|+.|++.+-=.++.|..|..
T Consensus 95 ~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea--~~~l~~~r~~f~~~~l~Yv~~l~~vq~ 172 (207)
T cd07602 95 IEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKENQLQEA--DAQLDMERRNFHQASLEYVFKLQEVQE 172 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999886322 222323333333 499999999999655555666779999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHH
Q 006738 195 GQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHV 229 (633)
Q Consensus 195 gq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephV 229 (633)
+|--.+|.-+..+.+||+.||+.|.-.+..++|+.
T Consensus 173 rKkfefle~ll~~m~a~~tff~qG~el~~d~~py~ 207 (207)
T cd07602 173 RKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKPYL 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 99999999999999999999999999999999973
No 17
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=99.39 E-value=2.5e-11 Score=119.55 Aligned_cols=196 Identities=12% Similarity=0.170 Sum_probs=162.2
Q ss_pred HHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHH
Q 006738 31 LDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAY 109 (633)
Q Consensus 31 ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~y 109 (633)
.|.-++-..+ +.+|=+.+++|+.++-+.....-.|+.+|.+++-.++.-+..+|+--+..+|-.|+.+=.|+..-.+-+
T Consensus 7 ~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L 86 (207)
T cd07636 7 HEAELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRM 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 888899999999999999999999999999999666533222333338899999999999999999999
Q ss_pred HHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccH--HHHHHHHHhhHhhHhHHH
Q 006738 110 RSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSL--QQLQEAHDEYDQEATLFV 186 (633)
Q Consensus 110 r~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~--eqle~~r~~fqEeaqmc~ 186 (633)
..++...|.-||+.++| +|+.|+|-||.||+..+.|+..+.+...= ++..|.+-+-+ .+|...|+.|++.+==.+
T Consensus 87 ~~qa~~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~l--s~k~K~~~~eEA~~~L~~~r~~F~~~sLdYV 164 (207)
T cd07636 87 IENASEVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLNL--SSKKKESQLHEADSQVDLVRQHFYEVSLEYV 164 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhcC--cccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999988533221 22334443333 899999999997776666
Q ss_pred HHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchH
Q 006738 187 FRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPH 228 (633)
Q Consensus 187 frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~leph 228 (633)
+.|-.|..+|--++|.-+..+.+||+.||+.|.-.++.++|+
T Consensus 165 ~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~~y 206 (207)
T cd07636 165 FKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFSDF 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 777799999999999999999999999999999999999886
No 18
>smart00721 BAR BAR domain.
Probab=99.39 E-value=7.3e-11 Score=111.73 Aligned_cols=195 Identities=17% Similarity=0.233 Sum_probs=141.3
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHH
Q 006738 34 LAQASQDMQDMRGCYDSLLSAAAATA----------NSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQ 103 (633)
Q Consensus 34 l~~a~qdm~~Mk~~ydsllsaaaa~~----------ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~ 103 (633)
..+.-+.+..++++++.|+...-.+. ...-.|.+++.++...--.-..+.++...|.++.++|....++.
T Consensus 29 f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 108 (239)
T smart00721 29 FEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALKKLL 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555544444 33444555555542221001223345668999999999999999
Q ss_pred HHHHHHHHHhhhhccCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc----cccHHHHHHHHHhh
Q 006738 104 KLVDAYRSHIFQTITIPSESLL-NELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGE----TFSLQQLQEAHDEY 178 (633)
Q Consensus 104 kL~d~yr~nI~~tIt~PsESLL-keLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e----~~i~eqle~~r~~f 178 (633)
.+...+ .++...+..|+-.++ ++++.+.+..+.++.+|-+|+..+. +.++-+.+..|.. .-..++|+.++..|
T Consensus 109 ~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~-kl~~~~~~~~~~~~~kl~~~e~el~~ak~~f 186 (239)
T smart00721 109 QVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARH-KLKKAKKSKEKKKDEKLAKAEEELRKAKQEF 186 (239)
T ss_pred hhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence 999999 888888777777666 5999999999999999999999887 5555444443332 22569999999999
Q ss_pred HhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHH
Q 006738 179 DQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVK 230 (633)
Q Consensus 179 qEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk 230 (633)
++-...+.-.|-.|-......++..+..++.||++||+.|.+.|+.|.+++.
T Consensus 187 e~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 187 EESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9766666666777777777778999999999999999999999999998763
No 19
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=99.37 E-value=3.6e-11 Score=119.12 Aligned_cols=187 Identities=20% Similarity=0.198 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhccc-CCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhcc
Q 006738 40 DMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTAL-NDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTIT 118 (633)
Q Consensus 40 dm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~-~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt 118 (633)
=++-|...|++....++|+ ..|+..|.++---= .++ .||+.++.+|-.|+++=.||.....-+..++..+|.
T Consensus 21 ~~~~~~~~~~a~~~ls~a~----~~~~~~l~~~~~~~---f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~~q~~~sl~ 93 (215)
T cd07631 21 LFQAMHRIYDAQNELSAAT----HLTSKLLKEYEKQR---FPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMM 93 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc---CCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788889999998888886 46788887775110 122 278889999999999999999999999999999999
Q ss_pred CCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc---cHHHHHHHHHhhHhhHhHHHHHHhhhcc
Q 006738 119 IPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETF---SLQQLQEAHDEYDQEATLFVFRLKSLKQ 194 (633)
Q Consensus 119 ~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~---i~eqle~~r~~fqEeaqmc~frLKsLKq 194 (633)
.|++..+| ||+.|+|.||.||+..++||..+.+...= +|+.+.|-. ..+++...|+-|++-+-=.++.|-.|..
T Consensus 94 ~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~K~a~l--sk~K~~E~~~eea~~~v~~tR~~F~~~aLdYv~qLn~lQ~ 171 (215)
T cd07631 94 FPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRL--SKRRENEKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQY 171 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999988643322 233333333 3488899999999433334444559999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhh-hhhccchHHHHHHhh
Q 006738 195 GQSRSLLTQAARHHAAQLSFVKKALK-SLEAVDPHVKMVAEQ 235 (633)
Q Consensus 195 gq~rsLLtqaaRhhaAQl~fF~~GLK-sLE~lephVk~lae~ 235 (633)
+|--++|.-+..+.+||..||+.|.- ....++|+++.|+..
T Consensus 172 rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~f~~~l~~~ 213 (215)
T cd07631 172 KKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLTNIGTS 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999 556999999998754
No 20
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.28 E-value=2e-10 Score=113.34 Aligned_cols=194 Identities=12% Similarity=0.176 Sum_probs=164.1
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHH
Q 006738 33 ELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSH 112 (633)
Q Consensus 33 El~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~n 112 (633)
|+.+.-+-+.+|-|.+.+|++||=+.....-.|+..|.+|+--++-.+..+|+--++..|-.||.+=.|+..-...+..+
T Consensus 10 ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~ 89 (207)
T cd07633 10 ELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQN 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677889999999999999999999999999999999888754444455568999999999999999999999999
Q ss_pred hhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccH--HHHHHHHHhhHhhHhHHHHHH
Q 006738 113 IFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSL--QQLQEAHDEYDQEATLFVFRL 189 (633)
Q Consensus 113 I~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~--eqle~~r~~fqEeaqmc~frL 189 (633)
...+|..|++..+| +++.++|-||+||+..+.|+..+.+...= +...|..-+-+ .+|...|+.|++.+==-+|.|
T Consensus 90 aq~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k~a~~--s~k~K~~e~eEA~~~L~~~r~~F~~~aLdYV~qI 167 (207)
T cd07633 90 ASDLLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDRHVNL--SSKKKESQLQEADLQVDKERQNFYESSLEYVYQI 167 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhcc--cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999988532221 11223322222 689999999997776666667
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchH
Q 006738 190 KSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPH 228 (633)
Q Consensus 190 KsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~leph 228 (633)
-.|..+|--++|.-+-.+.+||..||+.|.-.+..++|+
T Consensus 168 ~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~~y 206 (207)
T cd07633 168 QEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFLPY 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccc
Confidence 799999999999999999999999999999999999886
No 21
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=99.13 E-value=7.4e-09 Score=102.46 Aligned_cols=185 Identities=15% Similarity=0.306 Sum_probs=146.1
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHhhhhhhh-cccCCchhhhHHHHHHHh
Q 006738 32 DELAQASQDMQDMRGCYDSLLSAAAATAN-------------SAYEFSESLQELGACLLEK-TALNDNEESGKVLLMLGK 97 (633)
Q Consensus 32 dEl~~a~qdm~~Mk~~ydsllsaaaa~~n-------------s~yefsEaleemGscll~k-ta~~dd~e~g~v~l~lgk 97 (633)
|+..+.-+.|.-.++.++.|+.+..++.+ ..| .++-||.|+++- ..+.+|...|.+|+++|.
T Consensus 7 ddf~~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~~g~~k~k~~----p~~~Lg~~M~~~g~~lg~dS~~G~aL~~~G~ 82 (215)
T cd07593 7 EEFLELEKEIELRKEGMERLHRSTEAYVEYLSKKKPLLDDKDKCL----PVEALGLVMINHGEEFPQDSEYGSCLSKLGR 82 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCC----hHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Confidence 34444455555666666666666555544 122 567778888755 445578889999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHh
Q 006738 98 VQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDE 177 (633)
Q Consensus 98 ~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~ 177 (633)
++..|-..-+.|..++..++..|++..|+|++++---.|..+.+|=+|++..+ +..|-|+. ....++||+.+..+
T Consensus 83 a~~kia~~q~~f~~~~~~~~l~pL~~~l~~~k~i~k~RKkLe~rRLdyD~~ks-k~~kak~~----~~~~eeElr~Ae~k 157 (215)
T cd07593 83 AHCKIGTLQEEFADRLSDTFLANIERSLAEMKEYHSARKKLESRRLAYDAALT-KSQKAKKE----DSRLEEELRRAKAK 157 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccc----chhHHHHHHHHHHH
Confidence 99999999999999999999999998889999999888999999999999987 55555433 24578999999999
Q ss_pred hHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 006738 178 YDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVD 226 (633)
Q Consensus 178 fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~le 226 (633)
|.+=...+.=++..|...- .+-+.++..+-.||++||+++...|+.|.
T Consensus 158 fees~E~a~~~M~~i~~~e-~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~ 205 (215)
T cd07593 158 YEESSEDVEARMVAIKESE-ADQYRDLTDLLDAELDYHQQSLDVLREVR 205 (215)
T ss_pred HHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987777777777766542 46678888889999999999999998774
No 22
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=99.11 E-value=1.1e-08 Score=102.55 Aligned_cols=200 Identities=18% Similarity=0.201 Sum_probs=145.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHH--HHHHhhhHHHHHH-----HHHHHhhhhhhh-cccCCchhhhHHHHHHHhHHHHHHH
Q 006738 33 ELAQASQDMQDMRGCYDSLLSA--AAATANSAYEFSE-----SLQELGACLLEK-TALNDNEESGKVLLMLGKVQFELQK 104 (633)
Q Consensus 33 El~~a~qdm~~Mk~~ydsllsa--aaa~~ns~yefsE-----aleemGscll~k-ta~~dd~e~g~v~l~lgk~q~EL~k 104 (633)
++.+.-+-|..+|+.+..++.= +.-.-|..+..-- ...-||.|+++- ..+.+|...|.+|.++|.++..|-.
T Consensus 16 ~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~rk~p~~~Lg~~M~~~g~~l~~~s~lg~~L~~~g~a~~~ia~ 95 (244)
T cd07595 16 ELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLKKLPEYGLAQSMLESSKELPDDSLLGKVLKLCGEAQNTLAR 95 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhccCcHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Confidence 4444444566666666666551 0001111111111 233455555544 3335678899999999999999999
Q ss_pred HHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC------CCCccccHHHHHHHHHh
Q 006738 105 LVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKN------GKGETFSLQQLQEAHDE 177 (633)
Q Consensus 105 L~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~------~K~e~~i~eqle~~r~~ 177 (633)
.-..|..+|-..+..|+..+|. ||+.+---+|..+.+|-+|++..+ +..|-++.. +|. ..+++||+.+.+.
T Consensus 96 ~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~-r~~ka~k~~~~~~~~~K~-~~l~eE~e~ae~k 173 (244)
T cd07595 96 ELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARS-RYNAAHKSSGGQGAAAKV-DALKDEYEEAELK 173 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHhcccccccccccccc-chHHHHHHHHHHH
Confidence 9999999999999999999996 999999999999999999999987 555654432 332 2357899888888
Q ss_pred hHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHhh
Q 006738 178 YDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQ 235 (633)
Q Consensus 178 fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae~ 235 (633)
|.+--..++-.+..+... -.+.+.+++.+..||+.|+++++..|+.+-|-|+..-.+
T Consensus 174 ~e~~~e~~~~~M~~~l~~-E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~ 230 (244)
T cd07595 174 LEQCRDALATDMYEFLAK-EAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQ 230 (244)
T ss_pred HHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887666666566555443 467889999999999999999999999999988766543
No 23
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=99.11 E-value=4.3e-09 Score=104.51 Aligned_cols=175 Identities=18% Similarity=0.211 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccC-CchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALN-DNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITI 119 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~-dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~ 119 (633)
++-|+..|++=...++||-.- |.-|-+... .+.++- ||+.++..|-.|+++=.||..+..-+..++..+|.+
T Consensus 22 ~~~~~~~~~~~~~~~~a~~~~----s~~l~~~~~---~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~ 94 (215)
T cd07632 22 LQAMQRVYGAQNEMCLATQQL----SKQLLAYEK---QNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVL 94 (215)
T ss_pred HHHHHHHHHhHHHHHHHHHHH----HHHHHHHHH---hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888886432 222222211 123444 899999999999999999999999999999999999
Q ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-CCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCc
Q 006738 120 PSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSK-NGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQS 197 (633)
Q Consensus 120 PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k-~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~ 197 (633)
|++..+| ||+.|+|.||.||+-.++|+.-+...-.=-|+| +-+.+.-.-.|+..+|+-|.+-+-=.+|-|-.|..+|-
T Consensus 95 pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~KnaqlskkK~~E~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RKK 174 (215)
T cd07632 95 PIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPKKRENEKVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRKR 174 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999887544333333 33444434467999999999444334444559999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhh
Q 006738 198 RSLLTQAARHHAAQLSFVKKALKSL 222 (633)
Q Consensus 198 rsLLtqaaRhhaAQl~fF~~GLKsL 222 (633)
-++|.-+..|.+||..||+.|.-.+
T Consensus 175 feiLE~mLsym~Aq~TFFhQGyeL~ 199 (215)
T cd07632 175 VAMLEPMLGYTHGQINFFKKGAELF 199 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998544
No 24
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=99.11 E-value=1.4e-08 Score=100.97 Aligned_cols=186 Identities=17% Similarity=0.292 Sum_probs=146.6
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHh-----hhHHHHH-----------------HHHHHHhhhhhhh-cccCCchhhh
Q 006738 33 ELAQASQDMQDMRGCYDSLLSAAAATA-----NSAYEFS-----------------ESLQELGACLLEK-TALNDNEESG 89 (633)
Q Consensus 33 El~~a~qdm~~Mk~~ydsllsaaaa~~-----ns~yefs-----------------EaleemGscll~k-ta~~dd~e~g 89 (633)
++.+.-+.|...++.++.|+..--++. .++..|. .+.+-||.|+++- ..+.+|...|
T Consensus 8 df~~le~~~d~~~~~~~~l~~~~~~~lqpNP~~r~~~~~~~~~~K~~g~~~~~~~p~~~~~Lg~~M~~~g~elg~~S~~G 87 (223)
T cd07592 8 EFLEMERKTDATSKLVEDLIPKTKEYLQPNPAARAKLAMQNTYSKIRGQAKSTKYPQPEGLLGEVMLKYGRELGEDSNFG 87 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccCcccCCCCcccHHHHHHHHHHhhcCCCChHH
Confidence 334444556666666666666655544 2333333 2246789999866 4556788999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccH
Q 006738 90 KVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSL 168 (633)
Q Consensus 90 ~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~ 168 (633)
.+|+++|.++.+|-..-..|...|-..+..|+..+|. |++.+-.-+|..+.+|=+|+++.+ +. +|. ..
T Consensus 88 ~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~k~-k~-------~k~---~e 156 (223)
T cd07592 88 QALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYKKR-KQ-------GKG---PD 156 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-------ccC---ch
Confidence 9999999999999999999999999999999999976 999999999999999999998765 22 222 57
Q ss_pred HHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHH
Q 006738 169 QQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVK 230 (633)
Q Consensus 169 eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk 230 (633)
+||+.+.+.|.+=...+.=+++.|.. .-.+-+.++..+=.||++||+++...|+.|.+.+.
T Consensus 157 eEl~~Ae~kfe~s~E~a~~~M~~il~-~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 157 EELKQAEEKFEESKELAENSMFNLLE-NDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877777777776655 34677888888889999999999999999988774
No 25
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=98.99 E-value=8.3e-08 Score=95.97 Aligned_cols=192 Identities=16% Similarity=0.269 Sum_probs=149.5
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHhh-----hHHHHH-H-----------HHHHHhhhhhhh-cccCCchhhhHHHH
Q 006738 32 DELAQASQDMQDMRGCYDSLLSAAAATAN-----SAYEFS-E-----------SLQELGACLLEK-TALNDNEESGKVLL 93 (633)
Q Consensus 32 dEl~~a~qdm~~Mk~~ydsllsaaaa~~n-----s~yefs-E-----------aleemGscll~k-ta~~dd~e~g~v~l 93 (633)
+++.+.-+.|..+++.++.|+..--++.. ++..|. + ..+-||.|+++- ..+..|...|.+|.
T Consensus 17 ~df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~Lg~~M~~~g~~lg~~S~~g~aL~ 96 (229)
T cd07594 17 AHFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQLGQAMIEAGNDFGPGTAYGSALI 96 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHhhCCCCCchHHHHH
Confidence 34445555566667777776666555442 222222 1 146789999866 34446788999999
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHH
Q 006738 94 MLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQ 172 (633)
Q Consensus 94 ~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle 172 (633)
++|.++..|-..-..|..+|...+..|+..+|. |++.+-.-.|..+.+|-+|++..+ +.. +.|........+++|+
T Consensus 97 ~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~-r~~--kAk~~~~~~~~e~elr 173 (229)
T cd07594 97 KVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACKT-RVK--KAKSAEAIEQAEQDLR 173 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh--hcCCccchhhhHHHHH
Confidence 999999999999999999999999999999999 999999999999999999999887 332 2233333356789999
Q ss_pred HHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 006738 173 EAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDP 227 (633)
Q Consensus 173 ~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lep 227 (633)
.+.++|++=...+.=+++.|... ..+-|.++..+-.||++||+++...|+.|.+
T Consensus 174 ~Ae~kF~~~~E~a~~~M~~i~~~-~~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~~ 227 (229)
T cd07594 174 VAQSEFDRQAEITKLLLEGISST-HANHLRCLRDFVEAQMTYYAQCYQYMDDLQR 227 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998888888888866653 2467888899999999999999999987754
No 26
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=98.87 E-value=7e-08 Score=100.56 Aligned_cols=142 Identities=20% Similarity=0.322 Sum_probs=120.0
Q ss_pred Hhhhhhhh-cccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 72 LGACLLEK-TALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESL-LNELQTVEEMKRQCDEKRNVCEYML 149 (633)
Q Consensus 72 mGscll~k-ta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESL-LkeLk~VeemKkqcDekr~~YE~m~ 149 (633)
+|.|++.- .+|-+|-..|.+|+++|+.-+|+-.+=+++.-|+.++.--||+.| ++|||.+--=.|-.+-.|-+|+++.
T Consensus 88 Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kk 167 (366)
T KOG1118|consen 88 LGDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKK 167 (366)
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 88888855 678899999999999999999999999999999999999999999 9999999955556789999999987
Q ss_pred HHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHH---HhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 006738 150 MRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFR---LKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVD 226 (633)
Q Consensus 150 ~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~fr---LKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~le 226 (633)
. ++-|.+ .|+|..|++-|+|-..+++-| ||++. ++=+.|+++.-.||++|||+.+.+|+.|.
T Consensus 168 k-k~~K~~----------dEelrqA~eKfEESkE~aE~sM~nlle~d----~eqvsqL~~Li~aqLdfhrqs~~iL~~l~ 232 (366)
T KOG1118|consen 168 K-KQGKIK----------DEELRQALEKFEESKELAEDSMFNLLEND----VEQVSQLSALIQAQLDFHRQSTQILQELQ 232 (366)
T ss_pred H-HhccCC----------hHHHHHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 333333 799999999998766666655 66654 34578999999999999999999999876
Q ss_pred hH
Q 006738 227 PH 228 (633)
Q Consensus 227 ph 228 (633)
-.
T Consensus 233 ~~ 234 (366)
T KOG1118|consen 233 MK 234 (366)
T ss_pred HH
Confidence 54
No 27
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.82 E-value=4.6e-07 Score=92.37 Aligned_cols=155 Identities=20% Similarity=0.242 Sum_probs=125.4
Q ss_pred HHHHhhhhhhh-cccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006738 69 LQELGACLLEK-TALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCE 146 (633)
Q Consensus 69 leemGscll~k-ta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE 146 (633)
+--||.|+++- ..+.+|-..|+||-+-|-.|..|....++|--+|=..|.-|+-.|+. ||+.+---||+..+.|-||+
T Consensus 59 e~~Ls~~M~es~keLg~dS~lg~aLe~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D 138 (257)
T cd07620 59 LMALSISMAESFKDFDAESSIRRVLEMCCFMQNMLANILADFEMKVEKDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWN 138 (257)
T ss_pred HhHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHH
Confidence 34578888776 55667889999998888888999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHhhccc------------------cCCCCccccHHHHHHH-------HHhhHhhHhHHHHHHhhhccCCchhHH
Q 006738 147 YMLMRQREKGRS------------------KNGKGETFSLQQLQEA-------HDEYDQEATLFVFRLKSLKQGQSRSLL 201 (633)
Q Consensus 147 ~m~~~~~EKgr~------------------k~~K~e~~i~eqle~~-------r~~fqEeaqmc~frLKsLKqgq~rsLL 201 (633)
++..++-...|+ -.+|.+.. .|||+.+ ++.|. +.|+.|.=|+. +..
T Consensus 139 ~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~l-keE~eea~~K~E~~kd~~~--a~Mynfl~kE~------e~a 209 (257)
T cd07620 139 SAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPL-KEEEEECWRKLEQCKDQYS--ADLYHFATKED------SYA 209 (257)
T ss_pred HHHHHHHHhhccccCCcccccccccccccccccccccc-HHHHHHHHHHHHHHHHHHH--HHHHHHHHhhH------HHH
Confidence 998754222121 12454443 4555555 66666 88888887775 456
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccchHHHHH
Q 006738 202 TQAARHHAAQLSFVKKALKSLEAVDPHVKMV 232 (633)
Q Consensus 202 tqaaRhhaAQl~fF~~GLKsLE~lephVk~l 232 (633)
.+++.+.-||++|.|+.|..||.+-|-|+.=
T Consensus 210 ~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~~ 240 (257)
T cd07620 210 NYFIRLLELQAEYHKNSLEFLDKNITELKEN 240 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888999999999999999999999863
No 28
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.82 E-value=1.8e-07 Score=94.17 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=112.5
Q ss_pred CCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-
Q 006738 83 NDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKN- 160 (633)
Q Consensus 83 ~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~- 160 (633)
.|+...|.+|+++|.++.+|-..=...-+.|......|+..+|+ +++.+-..+|--+.+|=+|+++.. +..| .++
T Consensus 100 ~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~-~~~k--a~~~ 176 (242)
T cd07600 100 EDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARA-ELKS--AEPA 176 (242)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh--cccc
Confidence 36888999999999999999997778888888888899999999 999999999999999999999987 3322 222
Q ss_pred CCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 006738 161 GKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDP 227 (633)
Q Consensus 161 ~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lep 227 (633)
.|.+. -+++||++.++|.+=-..++=+++.|... ...+.++..+..||+.||+++.+.|+.|.+
T Consensus 177 ~k~~~-~~~e~E~aEdef~~a~E~a~~~M~~il~~--~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~~ 240 (242)
T cd07600 177 EKQEA-ARVEVETAEDEFVSATEEAVELMKEVLDN--PEPLQLLKELVKAQLAYHKTAAELLEELLS 240 (242)
T ss_pred ccccc-hHHHHHHHHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333 57788888777765555555556666333 678999999999999999999999998765
No 29
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=98.80 E-value=3.6e-07 Score=91.39 Aligned_cols=151 Identities=17% Similarity=0.315 Sum_probs=128.8
Q ss_pred HHHHHhhhhhhh-cccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHH
Q 006738 68 SLQELGACLLEK-TALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVC 145 (633)
Q Consensus 68 aleemGscll~k-ta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~Y 145 (633)
+.+-||.|.++- ..+.+|...|.+|.++|.++..|-..-+.|..+|-..+..|+..+|. |++++---+|..+.+|-+|
T Consensus 65 ~~~~Lg~~M~~~G~~lg~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~ 144 (223)
T cd07615 65 TEGLLGDCMLRYGRELGEESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDF 144 (223)
T ss_pred chhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346688888866 44557889999999999999999999999999999999999999975 9999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 006738 146 EYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAV 225 (633)
Q Consensus 146 E~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~l 225 (633)
+++.+ +. +| -.++||+.+...|+|=...++=+.+.|...- .+-+.++..+-.||++|+++++..|+.|
T Consensus 145 D~~K~--r~------~k---~~~eE~~~A~~kfees~E~a~~~M~n~le~e-~e~~~~L~~lv~AQl~Yh~~a~eiL~~l 212 (223)
T cd07615 145 DYKKK--RQ------GK---IPDEEIRQAVEKFEESKELAERSMFNFLEND-VEQVSQLSVLIEAALDYHRQSTEILEDL 212 (223)
T ss_pred HHHHH--cC------CC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99653 11 22 1499999999999988888888887776543 4667888899999999999999999999
Q ss_pred chHHH
Q 006738 226 DPHVK 230 (633)
Q Consensus 226 ephVk 230 (633)
.+-+.
T Consensus 213 ~~~l~ 217 (223)
T cd07615 213 QSKLQ 217 (223)
T ss_pred HHHHH
Confidence 99875
No 30
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=98.80 E-value=5.8e-07 Score=90.21 Aligned_cols=190 Identities=11% Similarity=0.176 Sum_probs=142.6
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHH-----hhhHH------------HHHHHHHHHhhhhhhh-cccCCchhhhHHHHH
Q 006738 33 ELAQASQDMQDMRGCYDSLLSAAAAT-----ANSAY------------EFSESLQELGACLLEK-TALNDNEESGKVLLM 94 (633)
Q Consensus 33 El~~a~qdm~~Mk~~ydsllsaaaa~-----~ns~y------------efsEaleemGscll~k-ta~~dd~e~g~v~l~ 94 (633)
++.+..+-+..+++.+..|+..--++ +.+++ .+-.+.+-||.|+++- ..+..|-..|.+|++
T Consensus 18 df~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~~~~~~Lg~~M~~~g~~~g~~S~~G~aL~~ 97 (229)
T cd07616 18 HLENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRMNNPELLGQYMIDAGNEFGPGTAYGNALIK 97 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 33444445555666666665543331 22333 2334567789999866 344478899999999
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHH
Q 006738 95 LGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQE 173 (633)
Q Consensus 95 lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~ 173 (633)
+|.++..|-..-..|.+++-..+..|+.++|. ||+.+---.|..+.+|=+|++..+ +.-|.|+...+ ....++|+.
T Consensus 98 ~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~-r~~kAk~~~~~--~~~e~elr~ 174 (229)
T cd07616 98 CGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKT-RLKKAKVAEAR--AAAEQELRI 174 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCcchhh--cchHHHHHH
Confidence 99999999999999999988899999999998 999999888899999999999887 44343332222 224799999
Q ss_pred HHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 006738 174 AHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVD 226 (633)
Q Consensus 174 ~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~le 226 (633)
+.++|.+-...++=+++-|. .--.+-+.++..+-.||++||+++-..|+.|.
T Consensus 175 ae~efees~E~a~~~m~~i~-~~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~ 226 (229)
T cd07616 175 TQSEFDRQAEITRLLLEGIS-STHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQ 226 (229)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987777777776666 22456788888999999999999998888764
No 31
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=98.77 E-value=5.1e-07 Score=90.23 Aligned_cols=151 Identities=19% Similarity=0.320 Sum_probs=126.7
Q ss_pred HHHHHHhhhhhhh-cccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHH
Q 006738 67 ESLQELGACLLEK-TALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNV 144 (633)
Q Consensus 67 EaleemGscll~k-ta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~ 144 (633)
.+.+-||.|+++- ..+.+|...|.+|+++|.++..|-..-..|..+|-..+..|++.+|. |++.+---.|..+.+|-+
T Consensus 64 ~~~~~Lg~~M~~~G~~lg~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLd 143 (223)
T cd07614 64 QSEGLLGETMIRYGKELGDESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLD 143 (223)
T ss_pred ChHhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999876 45557889999999999999999999999999999999999999995 999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006738 145 CEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEA 224 (633)
Q Consensus 145 YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~ 224 (633)
|+++.++ .+| -..|||+.+..+|.+=...++=++..|... -.+-+.++..+-.||++||+++...|+.
T Consensus 144 yD~~K~r--------~~k---~~eeelr~a~ekFees~E~a~~~M~~il~~-e~e~~~~L~~lveAQl~Yh~qa~eiL~~ 211 (223)
T cd07614 144 FDYKKKR--------QGK---IPDEELRQAMEKFEESKEVAETSMHNLLET-DIEQVSQLSALVDAQLDYHRQAVQILDE 211 (223)
T ss_pred HHHHHHc--------CCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9996531 122 125899999999998777777777766654 2467888888999999999999999988
Q ss_pred cchHH
Q 006738 225 VDPHV 229 (633)
Q Consensus 225 lephV 229 (633)
|..-+
T Consensus 212 l~~~l 216 (223)
T cd07614 212 LAEKL 216 (223)
T ss_pred HHHHH
Confidence 86654
No 32
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=98.76 E-value=3e-07 Score=91.98 Aligned_cols=151 Identities=21% Similarity=0.272 Sum_probs=124.2
Q ss_pred HHHHHhhhhhhh-cccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHH
Q 006738 68 SLQELGACLLEK-TALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVC 145 (633)
Q Consensus 68 aleemGscll~k-ta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~Y 145 (633)
+.+-||.|+++- ..+.+|...|.+|.++|.++..|-..-..|..+|-..+.-|++.++. ||+++---.|..+.+|-+|
T Consensus 65 ~~~~Lg~~M~~~G~elg~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~ 144 (223)
T cd07613 65 AEALLAEAMLKFGRELGDECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDF 144 (223)
T ss_pred hHhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 356788888866 44557889999999999999999999999999999999999999775 9999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 006738 146 EYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAV 225 (633)
Q Consensus 146 E~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~l 225 (633)
+++.+ +. +|. .++||+.+...|+|=...+.=+.+.|...-. +-+.++..+-.||++|++++...|+.|
T Consensus 145 D~~K~--r~------~k~---~eeElr~A~~kFees~E~a~~~M~n~l~~e~-e~~~~L~~fveAQl~Yh~qa~eiL~~l 212 (223)
T cd07613 145 DYKKK--RQ------GKI---PDEELRQALEKFDESKEIAESSMFNLLEMDI-EQVSQLSALVQAQLEYHKQATQILQQV 212 (223)
T ss_pred HHHHH--hC------CCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99653 11 121 4999999999999877777744443333222 556688888999999999999999999
Q ss_pred chHHH
Q 006738 226 DPHVK 230 (633)
Q Consensus 226 ephVk 230 (633)
.+-+.
T Consensus 213 ~~~l~ 217 (223)
T cd07613 213 TVKLE 217 (223)
T ss_pred HHHHH
Confidence 98875
No 33
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=98.75 E-value=6.8e-07 Score=90.50 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=127.3
Q ss_pred HHHHhhhhhhh-cccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006738 69 LQELGACLLEK-TALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCE 146 (633)
Q Consensus 69 leemGscll~k-ta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE 146 (633)
.+-||.|+++- ..+.+|-..|+||.+.|.++..|-.....+-.+|-..+.-|+-.+|. ||+.+---+|....+|-+|+
T Consensus 59 ~~~Lgq~M~e~~~~lg~~s~~g~aL~~~gea~~kla~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D 138 (246)
T cd07618 59 LTALAQNMQEGSAQLGEESLIGKMLDTCGDAENKLAFELSQHEVLLEKDILDPLNQLAEVEIPNIQKQRKQLAKLVLDWD 138 (246)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHH
Confidence 67789999877 44556777999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHhhccccC--------CCCc----c--ccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHH
Q 006738 147 YMLMRQREKGRSKN--------GKGE----T--FSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQL 212 (633)
Q Consensus 147 ~m~~~~~EKgr~k~--------~K~e----~--~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl 212 (633)
+..++ .++..+.. +|-. - -.++.+|.++++|. ..|+.|..++ ...+.+++.+-.||+
T Consensus 139 ~~K~r-~~~a~~~~~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~--~dm~~~l~~e------~e~~~~l~~lv~aQ~ 209 (246)
T cd07618 139 SARGR-YNQAHKSSGTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQLA--ADMYNFASKE------GEYAKFFVLLLEAQA 209 (246)
T ss_pred HHHHH-HHhccccCccccccccchhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHcC------HHHHHHHHHHHHHHH
Confidence 98873 34332211 2311 1 12255666666666 6788887554 567889999999999
Q ss_pred HHHHHHhhhhhccchHHHHHHhh
Q 006738 213 SFVKKALKSLEAVDPHVKMVAEQ 235 (633)
Q Consensus 213 ~fF~~GLKsLE~lephVk~lae~ 235 (633)
.||++.+..||.+-|-|+.+.++
T Consensus 210 eYHr~a~e~Le~~~p~i~~~~~~ 232 (246)
T cd07618 210 DYHRKALAVIEKVLPEIQAHQDK 232 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887653
No 34
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.68 E-value=1.7e-06 Score=87.93 Aligned_cols=158 Identities=18% Similarity=0.264 Sum_probs=121.9
Q ss_pred HHhhhhhhh-cccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 006738 71 ELGACLLEK-TALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYM 148 (633)
Q Consensus 71 emGscll~k-ta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m 148 (633)
-||.|+++- ..+.+|...|+||.+.|.++..|-.-...+-.+|-..+.-|+-.+|. ||+++---+|....+|-+|++.
T Consensus 61 ~L~q~M~~~g~elg~~s~lg~aL~~~gea~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~ 140 (248)
T cd07619 61 TLAQCMVEGAAVLGDDSLLGKMLKLCGETEDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSS 140 (248)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHH
Confidence 588888866 45557889999999999999999999999999999999999999999 9999999999999999999998
Q ss_pred HHHHHhhccccC--------CC-CccccHHHHHHHHHhhHh-----hHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHH
Q 006738 149 LMRQREKGRSKN--------GK-GETFSLQQLQEAHDEYDQ-----EATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSF 214 (633)
Q Consensus 149 ~~~~~EKgr~k~--------~K-~e~~i~eqle~~r~~fqE-----eaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~f 214 (633)
.+++. ...++. ++ .+--++++||++-+.|.. +..|+.|.=+++.+ ..+++.+-.||+.|
T Consensus 141 K~r~~-~a~~~~~~~~~~~~~~~k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~------~~~l~~Lv~AQleY 213 (248)
T cd07619 141 RTRWQ-QSSKSSGLSSNLQPTGAKADALREEMEEAANRMEICRDQLSADMYSFVAKEIDY------ANYFQTLIEVQAEY 213 (248)
T ss_pred HHHHH-hccccccccccccCCCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 87432 111110 11 112234555554444431 24456666666654 34478888999999
Q ss_pred HHHHhhhhhccchHHHHHHhh
Q 006738 215 VKKALKSLEAVDPHVKMVAEQ 235 (633)
Q Consensus 215 F~~GLKsLE~lephVk~lae~ 235 (633)
+++.+..||.+-|-|+.+.+.
T Consensus 214 Hr~A~eiLe~l~~~i~~~~~~ 234 (248)
T cd07619 214 HRKSLELLQSVLPQIKAHQEA 234 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887664
No 35
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=98.65 E-value=3.6e-06 Score=82.35 Aligned_cols=188 Identities=16% Similarity=0.272 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHh
Q 006738 41 MQDMRGCYDSLLSAAA-------ATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHI 113 (633)
Q Consensus 41 m~~Mk~~ydsllsaaa-------a~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI 113 (633)
|.+|+-+|+.|+++|. |++...-.|.+||+++|..... .+.-.|+|.+|+.++.++++|...++.+...+
T Consensus 5 ~~~~~P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~---s~~s~~lG~~L~~~s~~~r~i~~~~~~~~~~~ 81 (219)
T PF08397_consen 5 MEDFNPAWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASN---SRGSKELGDALMQISEVHRRIENELEEVFKAF 81 (219)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666655553 3445556799999999987652 22367999999999999999999999999999
Q ss_pred hhhccCCcHHHHH-HHHHHHHHHHHHHHHHH----HHHHHHHH--HHhhccccCCCCcccc--HH---HHHHHHHhhHhh
Q 006738 114 FQTITIPSESLLN-ELQTVEEMKRQCDEKRN----VCEYMLMR--QREKGRSKNGKGETFS--LQ---QLQEAHDEYDQE 181 (633)
Q Consensus 114 ~~tIt~PsESLLk-eLk~VeemKkqcDekr~----~YE~m~~~--~~EKgr~k~~K~e~~i--~e---qle~~r~~fqEe 181 (633)
...+..|+|.-+. +.+.+.++.|.|.+-++ .++-+... +..| |++.||+.... .+ ++...+.+|+
T Consensus 82 ~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~K-K~~kgk~~~~~~~~~~~~~v~~~~~ele-- 158 (219)
T PF08397_consen 82 HSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRK-KSRKGKDDQKYELKEALQDVTERQSELE-- 158 (219)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCTSCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccCCCccccHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999 88888866666555443 34332221 1122 22334544322 23 3334444444
Q ss_pred HhHHHHHHh-hh--ccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHhh
Q 006738 182 ATLFVFRLK-SL--KQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQ 235 (633)
Q Consensus 182 aqmc~frLK-sL--Kqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae~ 235 (633)
++|..=++ -| ..+++.-|+....-.-...+.|+.+|+..|...=+-...++..
T Consensus 159 -~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~~~~~~ 214 (219)
T PF08397_consen 159 -EFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQELCSD 214 (219)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 34444444 12 2345556666666666667788888777776655555555433
No 36
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=98.62 E-value=7.3e-06 Score=82.12 Aligned_cols=182 Identities=15% Similarity=0.219 Sum_probs=138.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHH-----hhhHHHHH------------HHHHHHhhhhhhh-cccCCchhhhHHHHH
Q 006738 33 ELAQASQDMQDMRGCYDSLLSAAAAT-----ANSAYEFS------------ESLQELGACLLEK-TALNDNEESGKVLLM 94 (633)
Q Consensus 33 El~~a~qdm~~Mk~~ydsllsaaaa~-----~ns~yefs------------EaleemGscll~k-ta~~dd~e~g~v~l~ 94 (633)
++.+..+-+..+++.+..|+..--.+ +.++..|. .+.+-||.|++.- ..+..|...|.+|+.
T Consensus 18 df~~l~~~~D~tk~~~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g~~s~~G~aL~~ 97 (220)
T cd07617 18 HFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFGPGTPYGKTLIK 97 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 33344445566666666666543331 22232222 2467799999865 344478899999999
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHH
Q 006738 95 LGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQE 173 (633)
Q Consensus 95 lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~ 173 (633)
+|.++..|-..=+.|..+|-....-|+..+|. ||+.+---.|-.+.+|=+|++..+ +.-| ..+||+.
T Consensus 98 ~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~-r~~k-----------ae~elr~ 165 (220)
T cd07617 98 VGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKA-RLKK-----------AEHELRV 165 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-----------cHHHHHH
Confidence 99999999999999999999999999999999 999999888889999999999876 2211 2579999
Q ss_pred HHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 006738 174 AHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDP 227 (633)
Q Consensus 174 ~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lep 227 (633)
+.++|.+=...+.=.++.|...- .+-|.++..+-.||++||+++-..|+.|..
T Consensus 166 A~~kf~~~~E~a~~~M~~il~~~-~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~ 218 (220)
T cd07617 166 AQTEFDRQAEVTRLLLEGISSTH-VNHLRCLHEFVEAQATYYAQCYRHMLDLQK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987776665566555432 467889999999999999999999887754
No 37
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.43 E-value=2.4e-05 Score=72.93 Aligned_cols=190 Identities=19% Similarity=0.229 Sum_probs=130.6
Q ss_pred hHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCch--hhhHHHHHHHhHHHHHHHHHHHHHHHhh
Q 006738 38 SQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNE--ESGKVLLMLGKVQFELQKLVDAYRSHIF 114 (633)
Q Consensus 38 ~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~--e~g~v~l~lgk~q~EL~kL~d~yr~nI~ 114 (633)
.++ +..|.++.+.|..+....+....+...++.+||.+|..=....+.. .++.+|..||.+.-.+..+++....+..
T Consensus 9 ~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (218)
T cd07596 9 AKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLSEAQANQEL 88 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 8888888888888888888888888889999998885322221222 5899999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-----------CCccccH--HHHHHHHHhhHhh
Q 006738 115 QTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNG-----------KGETFSL--QQLQEAHDEYDQE 181 (633)
Q Consensus 115 ~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~-----------K~e~~i~--eqle~~r~~fqEe 181 (633)
.++.-|+.-.+.-+..|+++=+.-+.++..|+.... ..+|.+.+.. |-+.+.. ++++.+...-..+
T Consensus 89 ~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~-~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~ 167 (218)
T cd07596 89 VKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKK-DLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKR 167 (218)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888888877654 4444433221 1111111 2333222222233
Q ss_pred HhHHHHHHh----hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchH
Q 006738 182 ATLFVFRLK----SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPH 228 (633)
Q Consensus 182 aqmc~frLK----sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~leph 228 (633)
...+..+++ .....+..+|-.-+..|=..|..|+++.+...|.+.|+
T Consensus 168 ~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~~~ 218 (218)
T cd07596 168 YEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLLPE 218 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 334555555 33334444444444444456888999999988888763
No 38
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.32 E-value=0.00011 Score=73.81 Aligned_cols=179 Identities=17% Similarity=0.227 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P 120 (633)
-.+||++.+++.+...|. -.+++.|.++. ...++++...+--.+-.+..+|...++.+.-.|..+|..|
T Consensus 31 ~Ke~K~Y~dav~~m~~a~----~~is~~l~~~~-------~~~~~~~~~~~~e~y~~~~~~l~~~~~~~~~~~~~~vl~P 99 (225)
T cd07590 31 YKDMKKYIEAVLALSKAE----QRLSQDLASGP-------LCEDNDELRNLVEALDSVTTQLDKTVQELVNLIQKTFIEP 99 (225)
T ss_pred HHHHHHHHHHHHHHHHHH----hHHHHHHHhcc-------cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665554332 45555555532 2334455555666677788899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc---cc--cHHHHHHHHHhhHhhHhHHHHHHh---hh
Q 006738 121 SESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGE---TF--SLQQLQEAHDEYDQEATLFVFRLK---SL 192 (633)
Q Consensus 121 sESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e---~~--i~eqle~~r~~fqEeaqmc~frLK---sL 192 (633)
+..++.-...|.++-+.-+.|-.||+.+.+ +.+|=..|..|.. -+ .+++++.++.+|++-=.+.-=-|= .+
T Consensus 100 l~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~-~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~ 178 (225)
T cd07590 100 LKRLRSVFPSVNAAIKRREQSLQEYERLQA-KVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIKLLEELPKFYNG 178 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999998889999999998876 5555554444443 22 237888888888732222111111 34
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHh
Q 006738 193 KQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAE 234 (633)
Q Consensus 193 Kqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae 234 (633)
+..=..-+++ -.+.+|+.||..+-|.+..|.+.+..-+.
T Consensus 179 r~~f~~p~Fq---sl~~~Ql~f~~e~~k~~~~l~~~~d~~~~ 217 (225)
T cd07590 179 RTDYFQPCFE---ALIKSQVLYYSQSTKIFTQLAPNLDNPIE 217 (225)
T ss_pred ccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4444444444 45678999999999999999887754443
No 39
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=98.27 E-value=0.00013 Score=70.12 Aligned_cols=195 Identities=14% Similarity=0.192 Sum_probs=137.9
Q ss_pred HHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHH
Q 006738 32 DELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYR 110 (633)
Q Consensus 32 dEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr 110 (633)
|+-....++ +..+-...+.|..+....++...++..++.+||.++..=.....+..++.+|-.||.+...+..+.+...
T Consensus 23 D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a 102 (236)
T PF09325_consen 23 DEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQA 102 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344 6666777777777777777777888888888888775332233345699999999999999999999999
Q ss_pred HHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc--cH-----------HHHHHHHHh
Q 006738 111 SHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETF--SL-----------QQLQEAHDE 177 (633)
Q Consensus 111 ~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~--i~-----------eqle~~r~~ 177 (633)
.+...++..|+.-.+.-+..|+++=++=+.+|..|+.... ...|-|.+..|-.+- ++ ++++.....
T Consensus 103 ~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~-~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~ 181 (236)
T PF09325_consen 103 NQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEK-ELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQ 181 (236)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888999999987765 555544444333322 11 222222222
Q ss_pred hHhhHhHHHHHHh----hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 006738 178 YDQEATLFVFRLK----SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDP 227 (633)
Q Consensus 178 fqEeaqmc~frLK----sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lep 227 (633)
.+++...|.=++| .....+..+|=..+..|=..|..+.++.++..|++-|
T Consensus 182 ~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 182 AKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 2333333433444 5566777777777778888899999999999988754
No 40
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=98.03 E-value=0.00059 Score=66.89 Aligned_cols=182 Identities=12% Similarity=0.114 Sum_probs=130.2
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 006738 36 QASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQ 115 (633)
Q Consensus 36 ~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~ 115 (633)
+....|.+|.++++.|...--..+++..+|+.++..||.|= .+..++.+|-.||.+...+..+....-.+...
T Consensus 15 ~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E-------~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~ 87 (216)
T cd07627 15 SLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLE-------LSKSLSDLLAALAEVQKRIKESLERQALQDVL 87 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666666666666666666667777777777777653 25789999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc--cH-----------HHHHHHHHhhHhhH
Q 006738 116 TITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETF--SL-----------QQLQEAHDEYDQEA 182 (633)
Q Consensus 116 tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~--i~-----------eqle~~r~~fqEea 182 (633)
+...++.-.+.-+.-|+++=.+=.++|..|+..-. ..+|-|.+..|-.+. ++ +++|.+....+++.
T Consensus 88 ~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~-~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~ 166 (216)
T cd07627 88 TLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAES-ELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEF 166 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888899999998765 666666554444321 11 33333333333344
Q ss_pred hHHHHHHh----hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 006738 183 TLFVFRLK----SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAV 225 (633)
Q Consensus 183 qmc~frLK----sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~l 225 (633)
..|.=++| -.+..+-.++-..+..|=.+|..++++.++.-|++
T Consensus 167 e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f 213 (216)
T cd07627 167 EEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETF 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 44566667777777777778888888877766654
No 41
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=97.90 E-value=0.0021 Score=64.09 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCch-hhhHHHHHHHhHHHHHH-HHHHHHHHHhhhhcc
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNE-ESGKVLLMLGKVQFELQ-KLVDAYRSHIFQTIT 118 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~-e~g~v~l~lgk~q~EL~-kL~d~yr~nI~~tIt 118 (633)
+.++.++.++...+=-+..++.-.|+++++++=.+- .+.++ .++.+| ..+-.||. .+++.+...|..+|.
T Consensus 27 ~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~lY~p~-----~~~~~~~~~~~y---~~~v~~l~~~~~~el~~~~~~~V~ 98 (224)
T cd07591 27 STKLQKEAKGYLDSLRALTSSQARIAETISSFYGDA-----GDKDGAMLSQEY---KQAVEELDAETVKELDGPYRQTVL 98 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCccHhHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444444444444444444444455555555432221 12111 233333 33345554 456666666788899
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc---cHHHHHHHHHhhHhhHhHHHHHHh-hhc-
Q 006738 119 IPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETF---SLQQLQEAHDEYDQEATLFVFRLK-SLK- 193 (633)
Q Consensus 119 ~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~---i~eqle~~r~~fqEeaqmc~frLK-sLK- 193 (633)
.|+..+++-+..|+.+=+.-+.|+-||+.... +.+|=+.|..|.+.- ..++|+.+..+|+.-= -.|| +|=
T Consensus 99 ~Pl~~~~~~~~~i~k~IkKR~~KllDYD~~~~-k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN----~~Lk~ELP~ 173 (224)
T cd07591 99 DPIGRFNSYFPEINEAIKKRNHKLLDYDAARA-KVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLN----DQLKTELPQ 173 (224)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhHhhHHHHHH-HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHH
Confidence 99999999999999888889999999998876 777766666665321 2367777777776211 1233 221
Q ss_pred --cCCchhHHHHH-HHHHHHHHHHHHHHhhhhhccchHHHHHHhhh
Q 006738 194 --QGQSRSLLTQA-ARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQ 236 (633)
Q Consensus 194 --qgq~rsLLtqa-aRhhaAQl~fF~~GLKsLE~lephVk~lae~~ 236 (633)
+-+ .++|..+ .-++..|++||..+.+.|..+..+.-.-+.+.
T Consensus 174 l~~~r-~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~~~~~~~ 218 (224)
T cd07591 174 LVDLR-IPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLDAQTRED 218 (224)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Confidence 111 1233333 34567899999999999999887765554443
No 42
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=97.90 E-value=0.0021 Score=64.72 Aligned_cols=182 Identities=20% Similarity=0.250 Sum_probs=132.5
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHH
Q 006738 32 DELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRS 111 (633)
Q Consensus 32 dEl~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~ 111 (633)
+||......++++.+.|+.|+..+-+..+..+++++.=.+||.+|=+-..-...+++|..|..+|++++=+.+---
T Consensus 33 ~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~l~~~f~~~~~~~~~~~~~~~---- 108 (229)
T PF06456_consen 33 DELDAKLELLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKSPALGEEFSANGEAQRSLAKQGE---- 108 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCGHHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH----
Confidence 5666667779999999999999999999999999999999999996553333578899999999999654433222
Q ss_pred HhhhhccCCcHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHhhc---cccCCCCccccH---HHHHHHHHh
Q 006738 112 HIFQTITIPSESLLNELQT-----VEE---MKRQCDEKRNVCEYMLMRQREKG---RSKNGKGETFSL---QQLQEAHDE 177 (633)
Q Consensus 112 nI~~tIt~PsESLLkeLk~-----Vee---mKkqcDekr~~YE~m~~~~~EKg---r~k~~K~e~~i~---eqle~~r~~ 177 (633)
++-.|+.-+++||.| ++| .=++|+..|-+|..-+...+|-. -...++++...+ .+.+.++..
T Consensus 109 ----~L~~~l~~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~k~r 184 (229)
T PF06456_consen 109 ----TLLKALKRFLSDLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEAKER 184 (229)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhcccchHHHHHHHHHHHHHH
Confidence 222334444555543 444 34688999999998777433332 233455554444 566788888
Q ss_pred hHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 006738 178 YDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKS 221 (633)
Q Consensus 178 fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKs 221 (633)
|+---.=+.-.|+-|-+.+-..|=.|+.++|.|=..||.+.-..
T Consensus 185 f~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~ 228 (229)
T PF06456_consen 185 FDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQA 228 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 88665556667778999999999999999999999999876443
No 43
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=97.85 E-value=0.0015 Score=64.66 Aligned_cols=184 Identities=13% Similarity=0.169 Sum_probs=132.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhc
Q 006738 38 SQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTI 117 (633)
Q Consensus 38 ~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tI 117 (633)
..-|.++.++.+.|+..--..+++..+|+.++..||.|=. ...++++|-.||.+.-.+..++...-.+-+.+.
T Consensus 25 e~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~-------~~~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l 97 (224)
T cd07623 25 DQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEE-------HTSLSRALSQLAEVEEKIEQLHGEQADTDFYIL 97 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447777777777777777778888888888888887653 456899999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC------CCCcccc--H---HHHHHHHHhhHhhHhHHH
Q 006738 118 TIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKN------GKGETFS--L---QQLQEAHDEYDQEATLFV 186 (633)
Q Consensus 118 t~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~------~K~e~~i--~---eqle~~r~~fqEeaqmc~ 186 (633)
..|+.--+.-+.-|++.=.+=-+.|..|.+.-. ...|-|.+. +|.+-+. . ++.|......+.+..-+.
T Consensus 98 ~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~-~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is 176 (224)
T cd07623 98 AELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQ-TLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEIS 176 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776666666666665533 233333322 2222221 1 333444444455555666
Q ss_pred HHHh----hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHH
Q 006738 187 FRLK----SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHV 229 (633)
Q Consensus 187 frLK----sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephV 229 (633)
+++| -.+..+-.++=..+..|=..|..+.++-++..|.+-|..
T Consensus 177 ~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~pe~ 223 (224)
T cd07623 177 KTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLPEA 223 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7766 556777788888888888899999999999999887753
No 44
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.73 E-value=0.004 Score=60.65 Aligned_cols=173 Identities=14% Similarity=0.123 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P 120 (633)
+....++...|..++...+....+++.++.+||..+-.= .+-+++++.+|-.||-+--.+..+++.+..+......-|
T Consensus 23 i~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~l--s~~E~~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~ 100 (200)
T cd07624 23 LTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLW--SASETELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPP 100 (200)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 666667777777788888888888888888888887422 223457999999999888888888888877777777777
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHh----hhccCC
Q 006738 121 SESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLK----SLKQGQ 196 (633)
Q Consensus 121 sESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLK----sLKqgq 196 (633)
+-..+.=...|+..=+.=|.++.+||.... +..|.|.+ ...|++.+.+.|+ .|.=.+| --++-|
T Consensus 101 Lkey~~y~~svk~~l~~R~~~q~~~e~~~e-~L~~k~~~-------l~~ev~~a~~~~e----~~~~~~~~E~~rF~~~K 168 (200)
T cd07624 101 LREYLLYSDAVKDVLKRRDQFQIEYELSVE-ELNKKRLE-------LLKEVEKLQDKLE----CANADLKADLERWKQNK 168 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 777776667777666666788899998765 55555544 3334444444443 3322332 122333
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 006738 197 SRSLLTQAARHHAAQLSFVKKALKSLEAVDP 227 (633)
Q Consensus 197 ~rsLLtqaaRhhaAQl~fF~~GLKsLE~lep 227 (633)
-++|=..+..|=-.|..|++++++.-|.+-|
T Consensus 169 ~~d~k~~l~~~a~~qi~~~~~~~~~We~~~p 199 (200)
T cd07624 169 RQDLKKILLDMAEKQIQYYEQCLAAWEEVLP 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4455555555556789999999999888765
No 45
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=97.73 E-value=0.0042 Score=60.55 Aligned_cols=183 Identities=16% Similarity=0.132 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCC----chhhhHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALND----NEESGKVLLMLGKVQFELQKLVDAYRSHIFQT 116 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~d----d~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~t 116 (633)
++++.+..+....+-.+..++.-+|+++++++-.+......... .+..-...-.+..+-.+|..-+...+..|-.+
T Consensus 18 ~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~l~~i~~~ 97 (216)
T cd07599 18 LKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYVKALEELKKELLEELEFFEER 97 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777777777788888999999998887752211000 01111334445666667777777777788889
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccc---CCCCcccc---HHHHHHHHHhhHhhHhHHHHHH
Q 006738 117 ITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREK-GRSK---NGKGETFS---LQQLQEAHDEYDQEATLFVFRL 189 (633)
Q Consensus 117 It~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EK-gr~k---~~K~e~~i---~eqle~~r~~fqEeaqmc~frL 189 (633)
+..|+..+++-++.|..+=+..+.|+-||+.... +.|| -+.+ ..|.+.-. .++|+.+.++|++-=..|.=-|
T Consensus 98 V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~-k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eL 176 (216)
T cd07599 98 VILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQN-KLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSEL 176 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888889999999999876 7777 3333 23332211 2677777777763222222211
Q ss_pred hhhccCCchhHHHHH-HHHHHHHHHHHHHHhhhhhcc
Q 006738 190 KSLKQGQSRSLLTQA-ARHHAAQLSFVKKALKSLEAV 225 (633)
Q Consensus 190 KsLKqgq~rsLLtqa-aRhhaAQl~fF~~GLKsLE~l 225 (633)
--|= ....++++.+ ..++..|++||......|+.+
T Consensus 177 P~l~-~~~~~~~~~~~~~~~~~ql~~~~~~~~~l~~~ 212 (216)
T cd07599 177 PKLL-ALADEFLPPLFKSFYYIQLNIYYTLHEYLQEF 212 (216)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 1223445444 345667999999988776543
No 46
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=97.58 E-value=0.018 Score=58.32 Aligned_cols=185 Identities=13% Similarity=0.171 Sum_probs=131.5
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccC-CchhhhHHHHHHHhHHHHHHHHHHHHHHH
Q 006738 34 LAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALN-DNEESGKVLLMLGKVQFELQKLVDAYRSH 112 (633)
Q Consensus 34 l~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~-dd~e~g~v~l~lgk~q~EL~kL~d~yr~n 112 (633)
|....+.++++++.|++|+.-+-+..+.-|+.++.=++||..+- ..+.. -.++...+|..+|..|+-|.|---.+
T Consensus 4 l~~qie~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa-~l~~re~~p~l~eeF~~~ae~hR~l~k~G~~l--- 79 (215)
T cd07659 4 LVKKLEELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFA-NIGVREPQPAASEAFTKFGEAHRSIEKFGIEL--- 79 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHccCCChhHHHHHHHhHHHHHHHHHhHHHH---
Confidence 34445668999999999999999999999999999999999984 43333 46799999999999987776654444
Q ss_pred hhhhccCCcHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHhh---ccccCCCCccccH------------HHHHH
Q 006738 113 IFQTITIPSESLLN-ELQTVEEM---KRQCDEKRNVCEYMLMRQREK---GRSKNGKGETFSL------------QQLQE 173 (633)
Q Consensus 113 I~~tIt~PsESLLk-eLk~Veem---KkqcDekr~~YE~m~~~~~EK---gr~k~~K~e~~i~------------eqle~ 173 (633)
...|.|-+.+|=- ==|+++|. -|+|+-.|-.|..-....+|= +.+-.+-+|.+-+ .+-|.
T Consensus 80 -l~ai~~~~s~l~T~l~KaipDT~lTikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~ 158 (215)
T cd07659 80 -LKTLKPMLSDLGTYLNKAIPDTKLTIKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQE 158 (215)
T ss_pred -HHHhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHH
Confidence 3333333333221 12455544 488999999988877644454 3444444454433 23366
Q ss_pred HHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 006738 174 AHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLE 223 (633)
Q Consensus 174 ~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE 223 (633)
+|+-|.---.=..-.|+=|.+++..++-.|+.++|-|=..+|.++.+.++
T Consensus 159 ~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~ 208 (215)
T cd07659 159 ARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLK 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67777633333334466889999999999999999999999998887765
No 47
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=97.53 E-value=0.0034 Score=65.55 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=94.8
Q ss_pred CCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 006738 83 NDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNG 161 (633)
Q Consensus 83 ~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~ 161 (633)
.|++-++.+|+.++.++.++-.-=-.--+-|..-+..|+...|+ +++.+-..+|..+.+|-.|+.+++..+.+ .+-.
T Consensus 145 ~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~--~~pe 222 (289)
T PF10455_consen 145 EDEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNTDFKKANKARKKVENSRLQFDAARANLKNK--AKPE 222 (289)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCcc
Confidence 35577999999999998885332111123344445558999999 99999999999999999999998733222 2333
Q ss_pred CCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 006738 162 KGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDP 227 (633)
Q Consensus 162 K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lep 227 (633)
|.+ --+.+||++-++|-.-..--+=..|++= ....+|..+.....||+.||++|.+.|+.+-.
T Consensus 223 kee-~~r~~lE~aEDeFv~aTeeAv~~Mk~vl--~~~e~l~~Lk~lv~AQl~Yhk~aae~L~~~~~ 285 (289)
T PF10455_consen 223 KEE-QLRVELEQAEDEFVSATEEAVEVMKEVL--DNSEPLRLLKELVKAQLEYHKKAAEALSELLK 285 (289)
T ss_pred cCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 2367777777777633222333344321 23455666677788999999999999987643
No 48
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.0052 Score=67.57 Aligned_cols=168 Identities=15% Similarity=0.148 Sum_probs=108.3
Q ss_pred hhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHH-HHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHH
Q 006738 59 ANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQ-KLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQ 137 (633)
Q Consensus 59 ~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~-kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkq 137 (633)
....-.|.+.|.+.=.| ...|.-++. +..+++ .|+.-|.+-|..+|-.|+.-+|+-...++.+=.-
T Consensus 64 ~~a~~~l~e~l~eiy~p----------~~~g~~~l~---~v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~fpdik~~i~K 130 (460)
T KOG3771|consen 64 LAASKKLAESLQEIYEP----------DWPGRDYLQ---AVADNDDLLWKDLDQKLVDQVLLPLDTYLGQFPDIKKAIAK 130 (460)
T ss_pred HHHHHHHHHHHHHhcCc----------ccccHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhchhHHHHHHh
Confidence 33445566666665555 333443332 222332 3566778888889999999888755555533333
Q ss_pred HHHHHHHHHHHH---HHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHH---HHHhhhccCCchhHHHHHHHHHHHH
Q 006738 138 CDEKRNVCEYML---MRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFV---FRLKSLKQGQSRSLLTQAARHHAAQ 211 (633)
Q Consensus 138 cDekr~~YE~m~---~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~---frLKsLKqgq~rsLLtqaaRhhaAQ 211 (633)
-+.|-.||+.++ + +.++.++|..+...-.+|||++++.+|++-=+++- ..|=+++++-++-++|.++ .+|
T Consensus 131 R~~Kl~DyD~~r~~~~-kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~---~~q 206 (460)
T KOG3771|consen 131 RGRKLVDYDSARHSFE-KLQAKKKKDEAKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLF---NLQ 206 (460)
T ss_pred hcchhhhhHHHHHHHH-HHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHH---HHH
Confidence 344445777766 3 44444466666566688999999999985433322 2344889999999999875 689
Q ss_pred HHHHHHHhhhhhccchHHHHHHhhhhccccccC
Q 006738 212 LSFVKKALKSLEAVDPHVKMVAEQQHIDYQFRG 244 (633)
Q Consensus 212 l~fF~~GLKsLE~lephVk~lae~~hiDy~fSg 244 (633)
++||+.+-|.-+.|.-.+-++ .+||.|+-|+.
T Consensus 207 ~vf~~Emskl~~~L~~v~~kl-~dqh~~~~~~~ 238 (460)
T KOG3771|consen 207 LVFHKEMSKLYKNLYDVLDKL-FDQHSDKVFTY 238 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccccchhhhh
Confidence 999999966666666555544 46777777763
No 49
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.41 E-value=0.032 Score=55.18 Aligned_cols=159 Identities=16% Similarity=0.085 Sum_probs=107.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhc
Q 006738 38 SQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTI 117 (633)
Q Consensus 38 ~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tI 117 (633)
...|.+.-++++.|+..-...++..-+|+.+|..||+|=. +-...++++|..||.++-.+..+.+.--++-..|.
T Consensus 17 ~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~-----~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~L 91 (198)
T cd07630 17 SANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDE-----ASVVALNRLCTKLSEALEEAKENIEVVAGNNENTL 91 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3335555555666666666666666666666666666531 00127899999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCc
Q 006738 118 TIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQS 197 (633)
Q Consensus 118 t~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~ 197 (633)
..+++--+..++-|++|=-+=-++|..|++--. -.+|.|.+ |. +++|.++.+.+++-.=|.=..|
T Consensus 92 g~~L~~Y~r~i~a~K~~l~~R~~~~~~~~~a~k-~l~Kar~~--k~-----~~ae~~~~~a~~~fe~iS~~~k------- 156 (198)
T cd07630 92 GLTLDLYSRYSESEKDMLFRRTCKLIEFENASK-ALEKAKPQ--KK-----EQAEEAKKKAETEFEEISSLAK------- 156 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHh--hH-----HHHHHHHHHHHHHHHHHHHHHH-------
Confidence 999999999999999887777788899998654 67776543 32 3455555554433333333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 006738 198 RSLLTQAARHHAAQLSFVKKALK 220 (633)
Q Consensus 198 rsLLtqaaRhhaAQl~fF~~GLK 220 (633)
.-+.||+..=-.-|+++|.
T Consensus 157 ----~EL~rF~~~Rv~~fk~~l~ 175 (198)
T cd07630 157 ----KELERFHRQRVLELQSALV 175 (198)
T ss_pred ----HHHHHHHHHHHHHHHHHHH
Confidence 2344555555555555554
No 50
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=97.37 E-value=0.02 Score=57.19 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcH
Q 006738 43 DMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSE 122 (633)
Q Consensus 43 ~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsE 122 (633)
++-+..+.-+.+--+..++.-.|+++|.++= . ..-+|. -.+..+......+++.|..-|..+|..|+.
T Consensus 30 kL~k~~K~Y~~av~~m~~~q~~~~e~l~~lY-----~-----p~~~~~--~~~~~v~e~~d~~~~~l~~~l~~~Vl~Pl~ 97 (211)
T cd07588 30 RLQKDLKNYLNSVRAMKQASKTLSETLKELY-----E-----PDWPGR--EHLASIFEQLDLLWNDLEEKLSDQVLGPLT 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----C-----CccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444456667778888886542 1 111343 333556677788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcc---ccHHHHHHHHHhhHhhHhHHHHH---HhhhccCC
Q 006738 123 SLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGET---FSLQQLQEAHDEYDQEATLFVFR---LKSLKQGQ 196 (633)
Q Consensus 123 SLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~---~i~eqle~~r~~fqEeaqmc~fr---LKsLKqgq 196 (633)
.+++-...|+.+=+-.+.|.-||+.... ..||=+.|..|.+. -.+++++.++..|++-=.++.-- |-.++.+=
T Consensus 98 ~~~s~f~~i~k~I~KR~~KllDYDr~r~-~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~lN~~L~~ELP~L~~~ri~f 176 (211)
T cd07588 98 AYQSQFPEVKKRIAKRGRKLVDYDSARH-NLEALKAKKKVDDQKLTKAEEELQQAKKVYEELNTELHEELPALYDSRIAF 176 (211)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhHHHHHH-HHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 9999999999888888999999998876 55554433334332 24488999998888433222221 12556666
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHH
Q 006738 197 SRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMV 232 (633)
Q Consensus 197 ~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~l 232 (633)
...+++.++ ++|..||+.--|....|.--+..|
T Consensus 177 ~~p~F~sl~---~~q~~F~~e~~~~~~~l~~~~~~l 209 (211)
T cd07588 177 YVDTLQSIF---AAESVFHKEIGKVNTKLNDVMDGL 209 (211)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666655 579999999888777766555544
No 51
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.37 E-value=0.0077 Score=60.33 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=73.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHhh---hhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccH
Q 006738 93 LMLGKVQFELQKLVDAYRSHIF---QTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSL 168 (633)
Q Consensus 93 l~lgk~q~EL~kL~d~yr~nI~---~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~ 168 (633)
+.|-+|..-|+.+...+...+. .+|.-|++.++| +|+.++|.||.||+-.+.|+.+++++..=.|+| +. ...+
T Consensus 63 ~al~~f~~~l~e~~~~ll~~~~~~~~~~~~pL~~f~k~~i~~~Ke~rk~Fd~~q~kyD~~L~r~~~~sk~K--~p-~~l~ 139 (214)
T cd07609 63 LALKRFGDGLKDFWGGVLSALKGNDSLILDPLRSFVKSDIRPYKELRKNFEYYQRKYDSMLARYVAQSKTK--EP-SSLR 139 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--Ch-hhhh
Confidence 4566676777777766666665 788999999999 999999999999999999999998776666655 22 2333
Q ss_pred ---HHHHHHHHhhHhhHhHHHHHHhhhc
Q 006738 169 ---QQLQEAHDEYDQEATLFVFRLKSLK 193 (633)
Q Consensus 169 ---eqle~~r~~fqEeaqmc~frLKsLK 193 (633)
.||-.+|..|.+.+-=|++.+-.|+
T Consensus 140 Eda~qL~e~Rk~Y~~aSLDyv~qi~~lq 167 (214)
T cd07609 140 EDAFQLFEARKAYLKASLDLVIAIPQLR 167 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888865554555444433
No 52
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=97.36 E-value=0.022 Score=57.47 Aligned_cols=165 Identities=15% Similarity=0.205 Sum_probs=102.2
Q ss_pred HHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHH
Q 006738 56 AATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEM 134 (633)
Q Consensus 56 aa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~Veem 134 (633)
.|++.-+--|..||++||..-..- +.--++|.||+.+.-+++.++.=++..-..+.+-+..|+|.=+. +-|.|..+
T Consensus 37 ~a~~~a~~~~~dAl~kia~~A~~s---~~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d~k~i~~~ 113 (223)
T cd07605 37 QALSQAAKVFFDALAKIGELASQS---RGSQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLELDQKVINKF 113 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345666678999999999887642 23469999999999999999999999988889999999988777 66666644
Q ss_pred H----HHHHHHHHHHHHHHHHHHhhccccCCC-----CccccHHHHHHHHHhhHhhHhHHHHHHh---hhccCCchhHHH
Q 006738 135 K----RQCDEKRNVCEYMLMRQREKGRSKNGK-----GETFSLQQLQEAHDEYDQEATLFVFRLK---SLKQGQSRSLLT 202 (633)
Q Consensus 135 K----kqcDekr~~YE~m~~~~~EKgr~k~~K-----~e~~i~eqle~~r~~fqEeaqmc~frLK---sLKqgq~rsLLt 202 (633)
. +++..+|.+++-..+ ...|-++|..| ...--.+.||..-+.+.|--+++.==|+ --..+++.-|+.
T Consensus 114 ~K~y~~E~K~~~~~l~K~~s-el~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~ 192 (223)
T cd07605 114 EKDYKKEYKQKREDLDKARS-ELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVD 192 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 455555556766544 33343333222 1111123333222222222222222233 223456666777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc
Q 006738 203 QAARHHAAQLSFVKKALKSLEA 224 (633)
Q Consensus 203 qaaRhhaAQl~fF~~GLKsLE~ 224 (633)
...-.....++||-+|-..|..
T Consensus 193 ~~c~v~~~e~~~~~~~~~~L~~ 214 (223)
T cd07605 193 KHCSVAKHEIAYHAKAMTLLST 214 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666777777776555543
No 53
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.28 E-value=0.046 Score=53.05 Aligned_cols=165 Identities=12% Similarity=0.161 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P 120 (633)
+.+..+....|..++...+....++...+.+||..+-.=..+ ..+++|.+|-.||..--.+.+..+.+...+....--|
T Consensus 13 ~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~-E~~~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~f~~~ 91 (185)
T cd07628 13 SDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSL-ESGEITEPFKIFSESLSQFSTSLRVLNKYTDENYLTS 91 (185)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667777778888888888888888888887422222 2234999999999888888888888888888877777
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHH-------HHhhhc
Q 006738 121 SESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVF-------RLKSLK 193 (633)
Q Consensus 121 sESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~f-------rLKsLK 193 (633)
+-.++.=...|+.+=+.=|.|+-+||.... ++ -.++.+++++.|+ .|.= |.+..|
T Consensus 92 Lkd~~~y~~s~k~~lk~R~~kq~d~e~l~e-~l-------------l~~~ve~a~~~~e----~f~~~~~~E~~rF~~~k 153 (185)
T cd07628 92 LKDLLHYILSLKNLIKLRDQKQLDYEELSD-YL-------------LTDEVENAKETSD----AFNKEVLKEYPNFERIK 153 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HH-------------HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 777777666777666667888999998765 55 2334444444444 2322 333555
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 006738 194 QGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDP 227 (633)
Q Consensus 194 qgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lep 227 (633)
+.-.++.|..+| .+|-.||+++++.-|.+.|
T Consensus 154 ~~elk~~l~~~a---~~qi~~y~~~~~~W~~~~~ 184 (185)
T cd07628 154 KQEIKDSLGALA---DGHIDFYQGLVEDWEKVEP 184 (185)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcC
Confidence 555555555544 5677899999998888776
No 54
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=97.28 E-value=0.043 Score=55.03 Aligned_cols=179 Identities=18% Similarity=0.214 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccC
Q 006738 40 DMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITI 119 (633)
Q Consensus 40 dm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~ 119 (633)
-+.++...|..|+..+-+..+.-|+.++.=.+||.+|-.- +. .+++.-.+|.++|.+++=|.+--..+...|+-.|+
T Consensus 10 ~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l-~~-k~p~l~~af~~~aet~k~l~kng~~Ll~al~~f~s- 86 (201)
T cd07660 10 VLRDTQRKYESVLRLARALASQFYQMLQTQKALGDAFADL-SQ-KSPELQEEFTYNAETQKLLCKNGETLLGALNFFVS- 86 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-
Confidence 4788899999999999999999999999999999999533 22 56788999999999988766654444333322110
Q ss_pred CcHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc-cccCCCCcccc-----HHHHHHHHHhhHhhHhHHHHHHh
Q 006738 120 PSESLLNELQTVE---EMKRQCDEKRNVCEYMLMRQREKG-RSKNGKGETFS-----LQQLQEAHDEYDQEATLFVFRLK 190 (633)
Q Consensus 120 PsESLLkeLk~Ve---emKkqcDekr~~YE~m~~~~~EKg-r~k~~K~e~~i-----~eqle~~r~~fqEeaqmc~frLK 190 (633)
-++-|++ |+++ -.=++|+-.|-+|..-+....|.+ .... .+.+- ..+.+.+|+-|+.--.=-.--|+
T Consensus 87 ~l~T~~~--kai~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~~--~~~l~r~~~~q~~~~~~k~kf~KLR~DV~~Kl~ 162 (201)
T cd07660 87 SLNTLVN--KTMEDTLMTVKQYESARIEYDAYRNDLEALNLGPRD--AATSARLEEAQRRFQAHKDKYEKLRNDVSVKLK 162 (201)
T ss_pred HHHHHHH--hhccHHHHHHHHHHhhhHhHHHHhccHHHcccCCCc--cchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111 1223 344778888888888775222211 1111 12222 25556777777733322333455
Q ss_pred hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 006738 191 SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAV 225 (633)
Q Consensus 191 sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~l 225 (633)
=|.+.+-..|-.|+.++|.|-.-||...-+.||..
T Consensus 163 lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L~~~ 197 (201)
T cd07660 163 FLEENKVKVMHKQLLLFHNAISAYFSGNQKQLEQT 197 (201)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 78899999999999999999999999887777653
No 55
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=97.22 E-value=0.034 Score=56.81 Aligned_cols=172 Identities=11% Similarity=0.140 Sum_probs=105.0
Q ss_pred HHHhhhHHHHHHHHHHHhhhhhhhcccC-CchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHH--
Q 006738 56 AATANSAYEFSESLQELGACLLEKTALN-DNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTV-- 131 (633)
Q Consensus 56 aa~~ns~yefsEaleemGscll~kta~~-dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~V-- 131 (633)
.|++--.-.|.+|++++|.+.. . .. .--|+|.+|..+.-++++|..-++.+-..|.+-...|+|.=+. +-|.+
T Consensus 39 ~a~~~A~~~f~Da~qKvad~A~-~--s~GaSkElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~wkk~~~~ 115 (231)
T cd07643 39 RATIVATSAFLDAFQKIADAAT-N--TRGATKEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEEWKKVANQ 115 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-c--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444455589999999998874 2 22 2469999999999999999999999999999999999998887 33444
Q ss_pred --HHHHHHHHHHHHHHHHHHH--HHHhhccccCCCCccccHHHHHHHHHhhHhh------HhHHHHHHh-hhccCCchhH
Q 006738 132 --EEMKRQCDEKRNVCEYMLM--RQREKGRSKNGKGETFSLQQLQEAHDEYDQE------ATLFVFRLK-SLKQGQSRSL 200 (633)
Q Consensus 132 --eemKkqcDekr~~YE~m~~--~~~EKgr~k~~K~e~~i~eqle~~r~~fqEe------aqmc~frLK-sLKqgq~rsL 200 (633)
||-++.|++.|.+..-+.. .+.+|.-+|.+ +-+.+||..+-.++.+- ..=-.+|-- =-.-+|+-.|
T Consensus 116 ldKd~~k~~kk~R~elKk~~~dt~klqkk~rKg~---~~~~~~ldsa~~dvn~k~~~lEe~ek~alR~aLiEER~Rfc~F 192 (231)
T cd07643 116 LDKDHAKEYKKARQEIKKKSSDTIRLQKKARKGK---GDLQPQLDSAMQDVNDKYLLLEETEKKAVRNALIEERGRFCTF 192 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccC---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777778888866542221 02333333322 33456666655444321 111111100 1123455555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHh
Q 006738 201 LTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAE 234 (633)
Q Consensus 201 LtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae 234 (633)
++++--....|++++-. +..|+.+-..+..++.
T Consensus 193 vs~l~pVl~~e~~ml~E-~~hl~~~~~~l~~~t~ 225 (231)
T cd07643 193 VSFLKPVLDEEISMLGE-VTHLQTIMEDLASLTA 225 (231)
T ss_pred HHHHhHHHHHHHHHHhh-HHHHHHHHHHHHHHhc
Confidence 66666666667777666 4555555444444443
No 56
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=97.18 E-value=0.13 Score=51.75 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=123.4
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhh-hHHHHHHHhHHHHHHHHHHHHHH
Q 006738 33 ELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEES-GKVLLMLGKVQFELQKLVDAYRS 111 (633)
Q Consensus 33 El~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~-g~v~l~lgk~q~EL~kL~d~yr~ 111 (633)
||..-..-+++++.-|..|+..+-+..+.-++.++.=.+||..|=+- +.. +++. |..|..+|+.++=+.+---.++-
T Consensus 3 eL~akle~l~~~~~~y~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l-~~~-~~~~a~~~f~~~~~a~r~~~k~g~~ll~ 80 (203)
T cd00011 3 ELELQLELLRETKRKYESVLQLGRALTAHLYSLSQTQHALGDAFADL-SQK-DPELAGEEFGYNAEAQKLLCKNGETLLG 80 (203)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-CCcHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44444455888999999999999999999999999999999999544 333 3444 89999999986644433222222
Q ss_pred HhhhhccCCcHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHhhccccCC---CCcc---ccHHHHHHHHHh
Q 006738 112 HIFQTITIPSESLLNELQT-----VEE---MKRQCDEKRNVCEYMLMRQREKGRSKNG---KGET---FSLQQLQEAHDE 177 (633)
Q Consensus 112 nI~~tIt~PsESLLkeLk~-----Vee---mKkqcDekr~~YE~m~~~~~EKgr~k~~---K~e~---~i~eqle~~r~~ 177 (633)
|+-=++.||.| ++| .=++|+..|-.|..-+..-+|=-....+ ++-. .+..+.+.+++-
T Consensus 81 --------~l~~~~~~l~T~~~kai~DT~lTI~~ye~aR~EY~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~k 152 (203)
T cd00011 81 --------AVNFFVSSINTLVTKAIEDTLLTVKQYEAARLEYDAYRLDLKELSLEPRDDTAGTRGRLRSAQATFQEHRDK 152 (203)
T ss_pred --------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhHHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHH
Confidence 22223333333 333 4578999999999887633333222211 1110 112566666666
Q ss_pred hHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 006738 178 YDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAV 225 (633)
Q Consensus 178 fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~l 225 (633)
|+---.=+.-.|+=|-+++-..|-.|++.||.|=+.||.+.-+.||.+
T Consensus 153 f~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~ 200 (203)
T cd00011 153 FEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQT 200 (203)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 663333333345578899999999999999999999999988888864
No 57
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.13 E-value=0.066 Score=53.51 Aligned_cols=183 Identities=16% Similarity=0.139 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P 120 (633)
|..+.+...-|+++.++.+...-+...+..+||-++..= +-.+++..+.+|-.|+.+..=++.+.+.-...+..++.-|
T Consensus 13 i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~l-a~~E~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~ep 91 (211)
T cd07598 13 ITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAY-ADTENPSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQP 91 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544444444444444443211 1112688899999999776666666666677777887777
Q ss_pred cHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHH--HHhhccccCCCCccc---cHHHHHHHHHhhHhhHhHHHHHHhhhc
Q 006738 121 SESLLNELQTVE-EMKRQCDEKRNV-CEYMLMR--QREKGRSKNGKGETF---SLQQLQEAHDEYDQEATLFVFRLKSLK 193 (633)
Q Consensus 121 sESLLkeLk~Ve-emKkqcDekr~~-YE~m~~~--~~EKgr~k~~K~e~~---i~eqle~~r~~fqEeaqmc~frLKsLK 193 (633)
+-.-..-.+.++ ++|. |.. |...+.+ +.||=|.+++-.... ...+|+++..+|..-.....=-+--..
T Consensus 92 Lk~Y~~l~k~~k~~~K~-----~~~ar~~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe 166 (211)
T cd07598 92 LALYGTICKHARDDLKN-----TFTARNKELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDANRSTKELEEQMDNFE 166 (211)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776677777 6653 333 3333321 344443332211112 235666666666632222222222344
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHH
Q 006738 194 QGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHV 229 (633)
Q Consensus 194 qgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephV 229 (633)
+.+-.+|=+-+..|-.+||.|..+.|+.+=++-..|
T Consensus 167 ~~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~ 202 (211)
T cd07598 167 KQKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDI 202 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667767778888899999888877655444443
No 58
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=97.11 E-value=0.093 Score=51.29 Aligned_cols=148 Identities=21% Similarity=0.215 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHH-HHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHH
Q 006738 59 ANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFEL-QKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQ 137 (633)
Q Consensus 59 ~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL-~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkq 137 (633)
.+..-.+++++.++-.. +..+.++ .+-.+..+..++ ..++..|...|-.+|..|+..|++=+..+..+=+-
T Consensus 39 ~~~~~~~~~~~~d~y~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~i~~~V~~Pl~~~~~~~~~~~k~I~K 110 (195)
T cd07589 39 VLVKVLALEVVLDLYPS-------NHPRLES-KWERFRRVVRGISSKALPEFKSRVRKLVIEPLSSLLKLFSGPQKLIQK 110 (195)
T ss_pred HHHHHHHHHHHHHhccC-------CChhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34445556666655321 1112222 233333444444 34789999999999999999999999999977777
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHh-hh---ccCCchhHHHHHH-HHHHHHH
Q 006738 138 CDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLK-SL---KQGQSRSLLTQAA-RHHAAQL 212 (633)
Q Consensus 138 cDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLK-sL---Kqgq~rsLLtqaa-RhhaAQl 212 (633)
-+.|.-||+.... +.+|+ +| ..++++.+..+|+. + --.|| +| -+. ...||+.+. -+...|.
T Consensus 111 R~~KllDYdr~~~-~~~k~----~k----~e~~l~~a~~~y~~---l-N~~L~~ELP~l~~~-~~~~l~~~~~s~~~~Q~ 176 (195)
T cd07589 111 RYDKLLDYERYKE-KKERG----GK----VDEELEEAANQYEA---L-NAQLKEELPKFNQL-TAQLLETCLKSFVELQR 176 (195)
T ss_pred HhhhhccHHHHHH-HHHhh----cc----hHHHHHHHHHHHHH---H-HHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 7888999998776 55552 22 46889999999982 1 12233 32 222 234454443 4567799
Q ss_pred HHHHHHhhhhhccchHH
Q 006738 213 SFVKKALKSLEAVDPHV 229 (633)
Q Consensus 213 ~fF~~GLKsLE~lephV 229 (633)
+||+..++-+ .+-||+
T Consensus 177 ~~~~~~~~~~-~~~p~~ 192 (195)
T cd07589 177 DLYDTLLKRA-ELLPLL 192 (195)
T ss_pred HHHHHHHHHh-cccccc
Confidence 9999988866 455543
No 59
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=96.97 E-value=0.078 Score=53.48 Aligned_cols=184 Identities=13% Similarity=0.144 Sum_probs=119.3
Q ss_pred hhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHH
Q 006738 29 AQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVD 107 (633)
Q Consensus 29 a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d 107 (633)
...-++-....- -.+||+..++|.. ..++.-.|+++|.++ +......-.+.+ .+..=...+++
T Consensus 19 ~rf~~le~~~~kL~Ke~K~Y~~av~~----M~~~q~~~se~l~e~-----Y~~~~~~~~~~~-------~v~e~~d~~~~ 82 (211)
T cd07612 19 MNLNMQQSDGNRLYKDLKAYLNAVKV----MHESSKRLSQTLQDI-----YEPDWDGHEDLG-------AIVEGEDLLWN 82 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-----hCCCcCcccHHH-------HHHhccHHHHH
Confidence 333444444444 4456666666553 455556699999883 221111111222 22222334789
Q ss_pred HHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc---cHHHHHHHHHhhHhhHhH
Q 006738 108 AYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETF---SLQQLQEAHDEYDQEATL 184 (633)
Q Consensus 108 ~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~---i~eqle~~r~~fqEeaqm 184 (633)
.|..-+..++..|++.+++=...|+++=+-=+.|--||+.++. +.+|-+-+..|.+.= .++||+.++..|++-=.+
T Consensus 83 ~~~~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~-~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~ 161 (211)
T cd07612 83 DYEAKLHDQALRTMESYMAQFPDVKERVAKRGRKLVDYDSARH-HLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRE 161 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888666666778888988886 666665544455432 348899998888743222
Q ss_pred HHHH---HhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHH
Q 006738 185 FVFR---LKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMV 232 (633)
Q Consensus 185 c~fr---LKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~l 232 (633)
.--- |-.++.+=.+..++.++ .+|..||+.--|....|.--+..|
T Consensus 162 L~~ELP~L~~~Ri~f~~psFeal~---~~q~~F~~E~~k~~~~l~~~~~~l 209 (211)
T cd07612 162 LREELPILYDSRIGCYVTVFQNIS---NLRDTFYKEMSKLNHDLYNVMKKL 209 (211)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2211 22677787888888776 489999999888777776666554
No 60
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=96.90 E-value=0.13 Score=52.16 Aligned_cols=171 Identities=19% Similarity=0.199 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P 120 (633)
|.+...+++.|+..=-..+++.-.|+.+|.-||+| ++...+++|-.||.+.--+.++...-.++-..+...+
T Consensus 40 Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~--------E~t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~ 111 (219)
T cd07621 40 IKDATAKADKMTRKHKDVADSYIKISAALTQLATS--------EPTPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDT 111 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 33334444444444444466666666666666665 2367999999999999999999999888888888888
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhH-------HHH-HHhhh
Q 006738 121 SESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATL-------FVF-RLKSL 192 (633)
Q Consensus 121 sESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqm-------c~f-rLKsL 192 (633)
+.--+..++-|++|=-+==+.|..|++--. -.+|-|-++.+- .-.....+++++.|++-... |.- |.+.+
T Consensus 112 L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k-~L~KaR~k~~~v-~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~f 189 (219)
T cd07621 112 LRYYMRDTQAAKDLLYRRLRCLANYENANK-NLEKARAKNKDV-HAAEAAQQEACEKFESMSESAKQELLDFKTRRVAAF 189 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHhchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999888888889999998643 667766554332 11334456666777632222 111 12222
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 006738 193 KQGQSRSLLTQAARHHAAQLSFVKKALKSL 222 (633)
Q Consensus 193 Kqgq~rsLLtqaaRhhaAQl~fF~~GLKsL 222 (633)
|. -.+.++.-.++|-.+|..+++.+|..|
T Consensus 190 k~-~lve~aE~~ik~Ak~~~~~l~~~~~~l 218 (219)
T cd07621 190 RK-NLVELAELEIKHAKAQIQLLKNCLAAL 218 (219)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21 234556667788888999999887654
No 61
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=96.81 E-value=0.13 Score=52.30 Aligned_cols=180 Identities=12% Similarity=0.144 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P 120 (633)
|.++-+..+.|..---..+.+..+|+.++..||.|= ++..++++|-.||.++.-|..+...--.+-+.|...|
T Consensus 38 Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E-------~~~~ls~~l~~laev~~ki~~~~~~qa~~d~~~l~e~ 110 (234)
T cd07664 38 LRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSE-------DHTALSRALSQLAEVEEKIDQLHQDQAFADFYLFSEL 110 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 444445555555555555666666666666666653 3567999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC------CCCccc--cH---HHHHHHHHhhHhhHhHHHHHH
Q 006738 121 SESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKN------GKGETF--SL---QQLQEAHDEYDQEATLFVFRL 189 (633)
Q Consensus 121 sESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~------~K~e~~--i~---eqle~~r~~fqEeaqmc~frL 189 (633)
++--+.-++-|+..=.+=-+.|..|...-. -.+|.|.+. +|.+-+ .. .+.|....+.+.+-.-+.=++
T Consensus 111 L~eYiR~i~svK~~f~~R~k~~~~~~~a~~-~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~ 189 (234)
T cd07664 111 LGDYIRLIAAVKGVFDQRMKCWQKWQDAQV-TLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTI 189 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888887544333344544443311 222222222 222111 11 222333333333333344444
Q ss_pred h----hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchH
Q 006738 190 K----SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPH 228 (633)
Q Consensus 190 K----sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~leph 228 (633)
| .....+-.++-..+..|-..|..+=.+.++.-|++-|.
T Consensus 190 k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p~ 232 (234)
T cd07664 190 RKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPE 232 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4 44455666666666666666666555555555555443
No 62
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=96.76 E-value=0.12 Score=52.06 Aligned_cols=174 Identities=12% Similarity=0.115 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P 120 (633)
-.+||+..+++. |..++.-.|+++|.++=.--- ...+ + ...++ .....+|+.|..-++..|..|
T Consensus 32 ~Ke~K~Y~dav~----~m~~sq~~~se~l~e~Y~p~~---~g~~----~--~~~~~---~~~d~~~~dl~~~lv~~vl~P 95 (211)
T cd07611 32 QRELRAYLAAIK----GMQEASKKLTESLHEVYEPDW---YGRD----D--VKTIG---EKCDLLWEDFHQKLVDGALLT 95 (211)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCcc---cccc----h--HHHHH---hhHHHHHHHHHHHHHHHHHHH
Confidence 345555555555 456667789999986531110 0111 1 11222 223357888888888889999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc---HHHHHHHHHhhHhhHhHHHHH---Hhhhcc
Q 006738 121 SESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFS---LQQLQEAHDEYDQEATLFVFR---LKSLKQ 194 (633)
Q Consensus 121 sESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i---~eqle~~r~~fqEeaqmc~fr---LKsLKq 194 (633)
++.++.=...|.++=+-=+.|--||+.+++ ..+|=.-|.+|.+.=. ++||+.|+.+|++-=.+.--- |=.++.
T Consensus 96 ~~~~~s~f~~I~~~I~KR~hKllDYD~~r~-~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~~Ri 174 (211)
T cd07611 96 LDTYLGQFPDIKNRIAKRSRKLVDYDSARH-HLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRV 174 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999888888776777888889999887 7777766667766532 388888888887322222111 125566
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHh
Q 006738 195 GQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAE 234 (633)
Q Consensus 195 gq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae 234 (633)
+=....++.++ .+|+.||+..-|.-..|.--|..|++
T Consensus 175 ~f~~psFeal~---~~q~~f~~E~~k~~~~l~~~~~~l~~ 211 (211)
T cd07611 175 GFYVNTFKNVS---SLEAKFHKEISVLCHKLYEVMTKLGE 211 (211)
T ss_pred HHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 66667777665 58999999988888888777777653
No 63
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of uncharacterized fungal proteins containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and an Arf GTPase Activating Protein (GAP) domain. These proteins may play roles in Arf-mediated functions involving membrane dynamics. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.75 E-value=0.19 Score=50.25 Aligned_cols=170 Identities=13% Similarity=0.151 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCc
Q 006738 43 DMRGCYDSLLSAAAAT-ANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPS 121 (633)
Q Consensus 43 ~Mk~~ydsllsaaaa~-~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~Ps 121 (633)
.||+|++....+.-|. ..-..+|.++|.+++.--- + .+ .+=-.|-++-.++..++..--.++.+.+..|+
T Consensus 16 ~~Kkl~kr~~~~~ea~~~~~~~~f~~ll~~~~~~~~-----~-~~---al~~yf~~~~~~~~~~~~~~~~~lq~~~iep~ 86 (192)
T cd07608 16 YLKRLIKRIVKLIEAQDQLVDLEFNELLSEAKFKND-----F-NV---ALDSYFDPFLLNLAFFLRDVCQDLQLKKIEPL 86 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----c-cH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4777777777766665 4455689999988875321 0 12 22234667778888888888888888888898
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHH--HhhhccCC-
Q 006738 122 ESLLN--ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFR--LKSLKQGQ- 196 (633)
Q Consensus 122 ESLLk--eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~fr--LKsLKqgq- 196 (633)
..+.. +++.++.+||+||+-=++|=.-+.++.-.+. |.+ -..--++.-|+.|+ +.=|-|. |--|--||
T Consensus 87 ~~~y~~~dik~~~~kkK~FEeeSKdYYs~l~kYLsn~~----~~k-~~DSK~l~KRk~FE--L~RFDY~~~mqdl~ggr~ 159 (192)
T cd07608 87 LKIYSINDIKELSDKKKDFEEESKDYYSWLSKYLSNES----DKK-RPDSKLLAKRKTFE--LSRFDYLNYLQDLHGGRK 159 (192)
T ss_pred hhccccchHHHHHHHhhhHHHHhHHHHHHHHHHhcccc----ccc-CcchHHHHHHHHHH--HHHhhHHHHHHHHhCCHH
Confidence 88776 9999999999999999998888887776554 111 12346788899998 8888887 44555554
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhccchH
Q 006738 197 SRSLLTQAARHHAAQLSFVKKALKSLEAVDPH 228 (633)
Q Consensus 197 ~rsLLtqaaRhhaAQl~fF~~GLKsLE~leph 228 (633)
...||..+-++...|-..|.--++-++++.|+
T Consensus 160 ~qell~~L~kf~~~q~~~~~~~~~~i~~~~p~ 191 (192)
T cd07608 160 EQELLSILTKFINQQYDSIALTSNKIDALRPS 191 (192)
T ss_pred HHHHHHHHHHHhhhhHHHHHhHhhhHHhhccC
Confidence 57899999999999988887666667777664
No 64
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.16 Score=55.46 Aligned_cols=196 Identities=16% Similarity=0.220 Sum_probs=126.2
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCch-hhhHHHHHHHhHHHHHHHHHHHH-
Q 006738 32 DELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNE-ESGKVLLMLGKVQFELQKLVDAY- 109 (633)
Q Consensus 32 dEl~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~-e~g~v~l~lgk~q~EL~kL~d~y- 109 (633)
.+..+....|++|..+...+..+....+....++..+++++|.++-.=.+++... +...+|..|.+++..+.+++...
T Consensus 274 ~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~ 353 (503)
T KOG2273|consen 274 KEFTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIESLSKLLEKLT 353 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555559999999888888888899999999999999999996555555555 89999999999999999999999
Q ss_pred HHHhhhhccCCcHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHHHhhccccCCC-----CccccHHHHHHHHHh
Q 006738 110 RSHIFQTITIPSESLLNELQTVE---EMKRQCDEKRNV----CEYMLMRQREKGRSKNGK-----GETFSLQQLQEAHDE 177 (633)
Q Consensus 110 r~nI~~tIt~PsESLLkeLk~Ve---emKkqcDekr~~----YE~m~~~~~EKgr~k~~K-----~e~~i~eqle~~r~~ 177 (633)
......+...++..+++-+..++ +....+..+|.. |..+.. +..|-+.++.. -..+.+.+.++....
T Consensus 354 ~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~ 432 (503)
T KOG2273|consen 354 AEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKE-QLSKLKKKNRSSFGFDKIDLAEKEIEKLEEK 432 (503)
T ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHhhhhhhccchhHHHHHHHHHHHHH
Confidence 77777777777777777655544 111113333333 322221 22222222211 111122222222222
Q ss_pred hHhhH--------hH------HHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchH
Q 006738 178 YDQEA--------TL------FVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPH 228 (633)
Q Consensus 178 fqEea--------qm------c~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~leph 228 (633)
+.+.- .+ +-.-++..++-+-.++..-+..+.-.+..++...|+.-|.+.+-
T Consensus 433 ~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~l~~W~~~~~~ 497 (503)
T KOG2273|consen 433 VNELEELLALKELELDEISERIRAELERFEESRRQDFKESLKKYADLHVEYAEQILKAWEKFLPS 497 (503)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 22111 11 11114456666667777777777788899999999998888873
No 65
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.56 E-value=0.42 Score=48.76 Aligned_cols=179 Identities=15% Similarity=0.095 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCc
Q 006738 42 QDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPS 121 (633)
Q Consensus 42 ~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~Ps 121 (633)
++.-.+++.|...--..++...+|..++..||.|=- .+-.|.+|-.||++.-.+..|...=..+.+.|+.-|+
T Consensus 35 ~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E~-------~~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L 107 (230)
T cd07625 35 QDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEET-------HHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGL 107 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445556777777666667777777777777777652 4678999999999999999999998999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh---hccccC----CCCccccHHHHHHH-------HHhhHhhHhH
Q 006738 122 ESLLNELQTVEEMKRQCDEKRNVCE---YMLMRQRE---KGRSKN----GKGETFSLQQLQEA-------HDEYDQEATL 184 (633)
Q Consensus 122 ESLLkeLk~VeemKkqcDekr~~YE---~m~~~~~E---Kgr~k~----~K~e~~i~eqle~~-------r~~fqEeaqm 184 (633)
+-.+.+...||+.=-.=-..|..|. .-+..+.+ |=|.++ .|-+-. .++|+.+ ...|+.-.+.
T Consensus 108 ~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA-~~~l~eA~~~e~~l~~k~~rIs~n 186 (230)
T cd07625 108 EWISRDAYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEA-IRQLEEATKHEHDLSLKLKRITGN 186 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988843222111222221 11111222 222211 122211 1233321 1122222221
Q ss_pred HHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchH
Q 006738 185 FVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPH 228 (633)
Q Consensus 185 c~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~leph 228 (633)
...-++........+|-.-+..|=-.|..+=++-|+.+|.|.++
T Consensus 187 m~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~~r~d 230 (230)
T cd07625 187 MLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSLLERIRLD 230 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 11222233445556666666777777888888999999999863
No 66
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=96.36 E-value=0.47 Score=44.45 Aligned_cols=165 Identities=13% Similarity=0.129 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P 120 (633)
+++|.+.|+- =+.-+.+|+..|.+|+.-...+... ...-...+|..|...+..+......+..+|.+.|.-|
T Consensus 16 ~~e~~~f~ke-------Ra~iE~eYak~L~kLak~~~~~~~~-~~~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~ 87 (191)
T cd07610 16 LKDLREFLKK-------RAAIEEEYAKNLQKLAKKFSKKPES-GKTSLGTSWNSLREETESAATVHEELSEKLSQLIREP 87 (191)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhcccCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556555544 3555789999999999887644221 1136788999999999999999999999999999999
Q ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhh---hccCC
Q 006738 121 SESLLNELQT-VEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKS---LKQGQ 196 (633)
Q Consensus 121 sESLLkeLk~-VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKs---LKqgq 196 (633)
++.+.+..+. .+.......+.-+.|....+ ..+| +....+.-..+++...+.+|.++..-|...+.. .....
T Consensus 88 ~~~~~~~~~~~rk~~~~~~~~~~k~~~~~~~-~~~k---k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~e~r~~~ 163 (191)
T cd07610 88 LEKVKEDKEQARKKELAEGEKLKKKLQELWA-KLAK---KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQEREEERLEI 163 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9988886666 45666677777777777765 5566 222223333377888888888777777666553 33333
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 006738 197 SRSLLTQAARHHAAQLSFVKK 217 (633)
Q Consensus 197 ~rsLLtqaaRhhaAQl~fF~~ 217 (633)
-+++|.+.+.+....+..+..
T Consensus 164 ~~~~l~~~~~~~~~~~~~~~~ 184 (191)
T cd07610 164 LKDNLKNYINAIKEIPQKIQQ 184 (191)
T ss_pred HHHHHHHHHHHHHhhhHHHhh
Confidence 444555555555544444433
No 67
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=96.18 E-value=0.077 Score=54.16 Aligned_cols=99 Identities=13% Similarity=0.277 Sum_probs=70.2
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHH
Q 006738 32 DELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRS 111 (633)
Q Consensus 32 dEl~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~ 111 (633)
|..--+.+.+--|=|.|.--+.++..+ +..|-+||.+||...+... --.++|.||+..+.++++++.-+..-..
T Consensus 16 eqfnP~lrnLv~lGk~Y~KA~~a~~~A---~~~y~dal~Kige~A~~s~---~SkeLG~~L~qi~ev~r~i~~~le~~lK 89 (226)
T cd07645 16 EQFNPGLRNLINLGKNYEKAVNAMVLA---GKAYYDGVAKIGEIAAVSP---VSKELGHVLMEISDVHKKLNDSLEENFK 89 (226)
T ss_pred HhcCHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777776555444333 3568899999999887543 3589999999999999999985554444
Q ss_pred HhhhhccCCcHHHHH-HHHHHH-HHHH
Q 006738 112 HIFQTITIPSESLLN-ELQTVE-EMKR 136 (633)
Q Consensus 112 nI~~tIt~PsESLLk-eLk~Ve-emKk 136 (633)
-.-+-|..|+|-=++ |.+.+. ..|+
T Consensus 90 ~Fh~Ell~~LE~k~elD~kyi~a~~Kk 116 (226)
T cd07645 90 KFHREIIAELERKTDLDVKYMTATLKR 116 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555568998887 888887 4444
No 68
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=96.13 E-value=0.44 Score=54.73 Aligned_cols=209 Identities=14% Similarity=0.164 Sum_probs=141.5
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHH
Q 006738 32 DELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRS 111 (633)
Q Consensus 32 dEl~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~ 111 (633)
-||-++-+-+.++-|.-+.|+++--....-...|+..|++|---++--+..+|+--+...|..||.+-.++..=--.++-
T Consensus 27 ~el~~tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~ve~er~~~v~ 106 (812)
T KOG1451|consen 27 VELDRTNKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQVEDERMRMVG 106 (812)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777788888888888888777777778899999998765553323333334556666666553333322222334
Q ss_pred HhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccH---HHHHHHHHhhHhhHhHHHH
Q 006738 112 HIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSL---QQLQEAHDEYDQEATLFVF 187 (633)
Q Consensus 112 nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~---eqle~~r~~fqEeaqmc~f 187 (633)
|-...+..|+|..-| .+.+.||-|+.||+--+-|-..+ ||-=-=..|.+..-+ -|++.+|..|-|-.-=.+|
T Consensus 107 ~Ase~li~PlekFRkEqIG~~KE~KkKydKe~ekfy~~L----ekHLhLSskkesqlqeAD~Qvd~~r~nFfe~SL~YV~ 182 (812)
T KOG1451|consen 107 NASESLIEPLEKFRKEQIGTLKEEKKKYDKESEKFYQTL----EKHLHLSSKKESQLQEADAQVDTQRKNFFEASLQYVA 182 (812)
T ss_pred hhHHHHHhHHHHHHHHHhhhhHHHHhhhhhhhHHHHHHH----HHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555567777777 56777899999998877765554 555444444455444 5888888888766655677
Q ss_pred HHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHhh-hhccccccC
Q 006738 188 RLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQ-QHIDYQFRG 244 (633)
Q Consensus 188 rLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae~-~hiDy~fSg 244 (633)
.+.|....+--.++.-+.-|-+.=..||.-|.-.--.+.|+-..|.-. |+.--+|+|
T Consensus 183 ~vQeVQErk~FefVEpllafl~slf~f~h~g~el~qDF~pfk~qlq~s~QnTrn~f~~ 240 (812)
T KOG1451|consen 183 EVQEVQERKRFEFVEPLLAFLYSLFSFFHVGSELHQDFKPFKDQLQTSVQNTRNNFNA 240 (812)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHhhhhhHHHHHHHHHHHhhhcccc
Confidence 777888888778888888888888899999988888888887666433 444455554
No 69
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=96.02 E-value=0.74 Score=47.05 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P 120 (633)
|.++-++.++|..---..+++..+|+.++..||.|= ++.-++++|-.||.++.-|..+.+.--.+.+-|...|
T Consensus 38 Lk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E-------~~~~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~ 110 (234)
T cd07665 38 LRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSE-------DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAEL 110 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444455555544555566666666666666554 3677999999999999999999999999999998888
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 121 SESLLNELQTVEEMKRQCDEKRNVC 145 (633)
Q Consensus 121 sESLLkeLk~VeemKkqcDekr~~Y 145 (633)
++.-+.=++-|+ --|+..-+.|
T Consensus 111 l~eYiRli~SVK---~~f~~R~k~~ 132 (234)
T cd07665 111 LADYIRLLSAVR---GAFDQRMKTW 132 (234)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHH
Confidence 888776566555 3444443333
No 70
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.92 E-value=1.9 Score=42.26 Aligned_cols=167 Identities=13% Similarity=0.128 Sum_probs=112.5
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCC-chhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhcc
Q 006738 41 MQDMRGCYD-SLLSAAAATANSAYEFSESLQELGACLLEKTALND-NEESGKVLLMLGKVQFELQKLVDAYRSHIFQTIT 118 (633)
Q Consensus 41 m~~Mk~~yd-sllsaaaa~~ns~yefsEaleemGscll~kta~~d-d~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt 118 (633)
..+...++. .|.-+...++.+..+++..+.|||..+- ...+-+ ..+++.+|-.+|.+=-.....++.+..++...+.
T Consensus 13 ~~~~~~~L~~~l~kv~~Ri~k~~~~l~~dl~elG~~fn-~ls~~E~~~~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~ 91 (187)
T cd07629 13 TKKYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFN-AFSLEEQKSELAEALEKVGQAVDSTYLATEALVGSLYYNIN 91 (187)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555566665 4667788889999999999999999984 323332 2367999999998888888888888888888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhH-hHHHHHHhhhccCCc
Q 006738 119 IPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEA-TLFVFRLKSLKQGQS 197 (633)
Q Consensus 119 ~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEea-qmc~frLKsLKqgq~ 197 (633)
-|+-.++.=...++.+-+--+.|...||.... .+ .|++..+...|.+-+ +.+.--|---+..+-
T Consensus 92 EpL~E~~~y~~s~k~vlk~R~~K~~Q~e~l~~-~L--------------~e~~~~~~~~~~~~~~~~~~~el~rF~~ek~ 156 (187)
T cd07629 92 EPLSESAQFAGVVRELLKYRKLKHVQYEMTKD-SL--------------LESALVAASDDLVISSTIKQKDLPRFQRERE 156 (187)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888887777777666667788888887654 44 445544444555432 333222222233333
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 006738 198 ---RSLLTQAARHHAAQLSFVKKALKSLEAVD 226 (633)
Q Consensus 198 ---rsLLtqaaRhhaAQl~fF~~GLKsLE~le 226 (633)
+++|...|+ .|-.+..++|+.-+.+.
T Consensus 157 ~dl~~~l~~~a~---~~~~~a~~~~~~W~~~~ 185 (187)
T cd07629 157 ADLREILKNYSK---YHKDWAKQNLEAWKEAK 185 (187)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 344444443 46778888887776654
No 71
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=95.66 E-value=1.3 Score=43.93 Aligned_cols=174 Identities=18% Similarity=0.183 Sum_probs=96.4
Q ss_pred hHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 006738 38 SQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQT 116 (633)
Q Consensus 38 ~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~t 116 (633)
+++ +..+.++...|..+.+..++..+++...+.++|..+-.=.. -++++|.+|-.+|-+=-.+.+-++...... ..
T Consensus 19 ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~--~E~~l~~~le~~g~~~d~~~~~~~~~~~~~-~~ 95 (201)
T cd07622 19 LKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSA--IEKEMGDGLQKAGHYMDSYAASIDNGLEDE-EL 95 (201)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hh
Confidence 555 77777888888889999999999999999999998853311 247888887766655222222222222111 11
Q ss_pred ccCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHh---hHhHHHHHHh
Q 006738 117 ITIPSESLLNELQTVEEMKRQC---DEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQ---EATLFVFRLK 190 (633)
Q Consensus 117 It~PsESLLkeLk~VeemKkqc---Dekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqE---eaqmc~frLK 190 (633)
+.-|+-..+ +...=||.-| |-+.-+||.... +..|-+.+ ..++++++++.|++ ++--=.-|.+
T Consensus 96 f~e~LkEy~---~ya~slk~vlk~r~~~q~~~e~~~~-~L~~k~~~-------l~~~ve~a~~~~e~f~~~~~~E~~rF~ 164 (201)
T cd07622 96 IADQLKEYL---FFADSLRAVCKKHELLQYDLEKAED-ALANKKQQ-------GEEAVKEAKDELNEFVKKALEDVERFK 164 (201)
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 2222222222 222223443322 33333222 45666666665552 2222233455
Q ss_pred hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchH
Q 006738 191 SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPH 228 (633)
Q Consensus 191 sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~leph 228 (633)
..|+.=.++.|...| ..|-.||++|+..-|.+.-+
T Consensus 165 ~~K~~dlk~~l~~~A---~~qi~~~~~~~~~W~~~~~~ 199 (201)
T cd07622 165 KQKVRDLKEILISYA---KLQIKLAKKGLQTWTNIKEC 199 (201)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 666655555555544 56788999999988887654
No 72
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.61 E-value=1.9 Score=44.54 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHH----HHHHHHHHHHHHhhhh
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQF----ELQKLVDAYRSHIFQT 116 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~----EL~kL~d~yr~nI~~t 116 (633)
+.....+.-.+.-.....+...++|.+.+.++|--.-.= .+=++++|.+|-.||.+-- ++.++++..-.
T Consensus 63 ~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lw--s~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~----- 135 (243)
T cd07666 63 VEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLW--SASEEELADSLKGMASCIDRCCKATDKRMKGLSE----- 135 (243)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH--hccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 444444555556666667777778888888888654321 2335668888888887755 44444444333
Q ss_pred ccCCcHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHh-
Q 006738 117 ITIPSESLLNE-LQTVEE----MKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLK- 190 (633)
Q Consensus 117 It~PsESLLke-Lk~Vee----mKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLK- 190 (633)
.....|+| +..+.- ||+. |.+-.+||.++- +..|+|. + +++++++.++-++..+=|.=.||
T Consensus 136 ---~f~~~Lkeyv~y~~slK~vlk~R-~~~Q~~le~k~e-~l~k~~~-----d---r~~~~~ev~~~e~kve~a~~~~k~ 202 (243)
T cd07666 136 ---QLLPVIHEYVLYSETLMGVIKRR-DQIQAELDSKVE-ALANKKA-----D---RDLLKEEIEKLEDKVECANNALKA 202 (243)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHhhhh-----h---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344553 223333 3333 355566888775 6677432 2 34566666655554444444455
Q ss_pred ---hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 006738 191 ---SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAV 225 (633)
Q Consensus 191 ---sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~l 225 (633)
--++-+-+||=.-++.|=--|+.+++++|++-|.+
T Consensus 203 e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~f 240 (243)
T cd07666 203 DWERWKQNMQTDLRSAFTDMAENNISYYEECLATWESF 240 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777888888999999999988865
No 73
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=95.58 E-value=1.8 Score=44.28 Aligned_cols=180 Identities=16% Similarity=0.148 Sum_probs=118.7
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHH
Q 006738 32 DELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRS 111 (633)
Q Consensus 32 dEl~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~ 111 (633)
-++.+-..-|.+.-.+.+.|...=...+++--.|+.++--||+| +. ..+.++|..|+.+..=++++.-.-..
T Consensus 30 ~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~--e~------t~L~~~l~~laev~eki~~l~~~~A~ 101 (218)
T cd07662 30 TFLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQ--DS------TDICKFFLKVSELFDKTRKIEARVAA 101 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cc------hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555577777788888888888888888999999999998 34 56899999999998777777766666
Q ss_pred HhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhH-------hH
Q 006738 112 HIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEA-------TL 184 (633)
Q Consensus 112 nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEea-------qm 184 (633)
+=..++..=+.--+.++.-++||=-+==++|..||+--. -.+|-|-++ |.-.-...-.++++..|.+-. +=
T Consensus 102 ~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k-~L~KaR~~~-kev~~aE~~~~~a~~~Fe~IS~~aK~El~r 179 (218)
T cd07662 102 DEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANK-ALDKARAKN-KDVLQAETTQQLCCQKFEKISESAKQELID 179 (218)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555555566777888887777778889998543 566666663 221212344455666676422 22
Q ss_pred HHH-HHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 006738 185 FVF-RLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSL 222 (633)
Q Consensus 185 c~f-rLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsL 222 (633)
|.- |.+.+|. --..++.-.++|-.+|..|++..|..|
T Consensus 180 F~~~Rv~~Fkk-~Lv~y~E~~lkhak~~~~~~~~~~~~l 217 (218)
T cd07662 180 FKTRRVAAFRK-NLVELAELELKHAKGNLQLLQSCLAVL 217 (218)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 221 1222221 123455556677778888888876543
No 74
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=95.56 E-value=0.79 Score=48.10 Aligned_cols=133 Identities=16% Similarity=0.236 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P 120 (633)
|+++=++=++++.+-.+.+-....-+++|-+-|.. .|++++.|.-+||+.-+|+..+.+.|..+.-..
T Consensus 59 L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~--------edddl~DIsDklgvLl~e~ge~e~~~a~~~d~y---- 126 (271)
T PF13805_consen 59 LQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQ--------EDDDLSDISDKLGVLLYEIGELEDQYADRLDQY---- 126 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 45555555555555444555555667777777754 378999999999999999999999999996553
Q ss_pred cHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHH
Q 006738 121 SESLLNELQTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFR 188 (633)
Q Consensus 121 sESLLkeLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~fr 188 (633)
-.-||.++..| .+-.-=|.++++ ...++ +.++...++.|-..+..|=...+.+.--+|+||-.|.
T Consensus 127 -R~~LK~IR~~E~sl~p~R~~r~~l-~d~I~-kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 127 -RIHLKSIRNREESLQPSRDRRRKL-QDEIA-KLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhHHHHHhHHH-HHHHH-HHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 56788888888 444444444433 33333 3333233333333322233344455556666665554
No 75
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.53 E-value=0.88 Score=46.94 Aligned_cols=175 Identities=14% Similarity=0.144 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P 120 (633)
..+.-.+.-.|.-+.+..+.+.+++.+.++++|.-+..=.++ +++++..|-.|+.+--++.+.++++..++-....-+
T Consensus 60 ~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~l--E~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~ 137 (240)
T cd07667 60 LDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGL--EGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPV 137 (240)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 444444555566677778888888888888888766433222 477888888888877777777776666654433323
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCc
Q 006738 121 SESLLNELQTVEEMKRQCDEKRNVCEYMLMR---QREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQS 197 (633)
Q Consensus 121 sESLLkeLk~VeemKkqcDekr~~YE~m~~~---~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~ 197 (633)
+-.++-=...++.+=|.=|.|--+||.++.. ++||- .|-++- -|+++.+.+.|.++.-==.=|...+|+.-+
T Consensus 138 Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l~~rre~~----~kLe~~-ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~ 212 (240)
T cd07667 138 LREYILYSESMKNVLKKRDQVQAEYEAKLEAVALRKEER----PKVPTD-VEKCQDRVECFNADLKADMERWQNNKRQDF 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221122222223334555567766531 11111 111110 266666666666554444455668999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 006738 198 RSLLTQAARHHAAQLSFVKKALKSLEAV 225 (633)
Q Consensus 198 rsLLtqaaRhhaAQl~fF~~GLKsLE~l 225 (633)
++.|..+|..| -.||++.+..-|.+
T Consensus 213 k~~l~~~Ad~~---i~fy~~~~~~We~~ 237 (240)
T cd07667 213 RQLLMGMADKN---IQYYEKCLTAWESI 237 (240)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 99999988865 57999988877765
No 76
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.49 E-value=1.5 Score=43.97 Aligned_cols=186 Identities=13% Similarity=0.174 Sum_probs=95.8
Q ss_pred HHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhh---HHHHHHHhHHHHHHHHHHHHH
Q 006738 35 AQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESG---KVLLMLGKVQFELQKLVDAYR 110 (633)
Q Consensus 35 ~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g---~v~l~lgk~q~EL~kL~d~yr 110 (633)
+++.++ |..+++.-+-|...-..-++=..+|+.-|.+++.-.... +..+.| .+|..+-.-+..+..++-.+.
T Consensus 7 ~~~l~~Rl~~~~~~~~el~~~~kERa~IE~~Yak~L~kLakk~~~~----~~~e~g~~~~~w~~i~~e~e~~a~~H~~la 82 (228)
T cd07650 7 TEILRIRLSQIKLVNTELADWLQERRRLERQYVQGLRKLARRNEPL----NKSLLGVFQNPWLTIESETEFIAASHGELA 82 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----cchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 555555555555555555666778899999888654311 123455 444444444444445555556
Q ss_pred HHhhhhccCCcHHHHH---HHHHHH------HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhh
Q 006738 111 SHIFQTITIPSESLLN---ELQTVE------EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQE 181 (633)
Q Consensus 111 ~nI~~tIt~PsESLLk---eLk~Ve------emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEe 181 (633)
.+|..-|--|+...-+ +.+.++ .+.+-+++..+-.+.... +.+|.+....+.+ -+.++..+.+++.+
T Consensus 83 ~~l~~~ve~~l~~~~~~~~~~~~l~~~q~l~~~~k~~~e~~k~~~Kl~k-k~~k~~~~~~~~~---~~~l~~~~~~We~~ 158 (228)
T cd07650 83 QRIETDVEEPLRDFATSTEFMNTLDDDQNLSNLAKELDESQKKWDKLKK-KHSKASSKAVSAA---VSDLEEARQQWDSQ 158 (228)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 6666555444444433 222222 222222222222111111 2222211111111 36777888888777
Q ss_pred HhHHHHHHhhh---ccCCchhHHHHHHHHHHHHHH----HHHHHhhhhhccchH
Q 006738 182 ATLFVFRLKSL---KQGQSRSLLTQAARHHAAQLS----FVKKALKSLEAVDPH 228 (633)
Q Consensus 182 aqmc~frLKsL---Kqgq~rsLLtqaaRhhaAQl~----fF~~GLKsLE~leph 228 (633)
+-+|-=.+-.| +..--+++|++.+-|..-||- ...+.+.+||.+++-
T Consensus 159 ~~~~~e~fQ~leeeRl~~lk~~l~~y~~~~sd~~~~~~~~~E~~~~~l~~~~~e 212 (228)
T cd07650 159 APFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTESAEECMNQLLEFDTE 212 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhHHHHHHHHHHhCCChH
Confidence 66654433333 222346899999999998885 455667777777653
No 77
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=95.28 E-value=3 Score=42.64 Aligned_cols=187 Identities=13% Similarity=0.134 Sum_probs=119.5
Q ss_pred HHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHH
Q 006738 32 DELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYR 110 (633)
Q Consensus 32 dEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr 110 (633)
|+--+--++ |..+-++.+-+...+-..+..--+.+.+..+++.+|+.= +..++..++++|..||.+..=+.++.-.--
T Consensus 22 D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l-~~ee~t~L~kals~lae~~Ek~~~l~~r~A 100 (218)
T cd07663 22 DEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSV-AAEEPTVIKKYLLKVAELFEKLRKVEDRVA 100 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344 556666666666666666667777777788888777632 333444689999999999888888887777
Q ss_pred HHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhH------
Q 006738 111 SHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATL------ 184 (633)
Q Consensus 111 ~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqm------ 184 (633)
++-..+...++.--+..++-+|+|=-+==.+|..|++--. -.+|-|-++.+- .-..+..+.+.+.|.+-...
T Consensus 101 ~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~~-~L~KaR~k~kev-~~aE~~~~ea~~~Fe~IS~~~k~El~ 178 (218)
T cd07663 101 SDQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSNK-ALDKARLKSKDV-KQAEAHQQECCQKFEKLSESAKQELI 178 (218)
T ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788887777777777888888887777788999998543 666666432211 11223344455555532221
Q ss_pred -HHH-HHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 006738 185 -FVF-RLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSL 222 (633)
Q Consensus 185 -c~f-rLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsL 222 (633)
|.- |.+.+|. -.+.++.-.++|-..|..+++..+..|
T Consensus 179 rF~~~Rv~~Fk~-~lve~~E~~ik~ak~~~~~~~~~~~~~ 217 (218)
T cd07663 179 SFKRRRVAAFRK-NLIEMTELEIKHAKNNVSLLQSCIDLF 217 (218)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 1222222 235566777888888999998876543
No 78
>smart00721 BAR BAR domain.
Probab=95.27 E-value=1.8 Score=41.57 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=74.2
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCCCc
Q 006738 86 EESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKG-RSKNGKGE 164 (633)
Q Consensus 86 ~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKg-r~k~~K~e 164 (633)
...|.++..++.+..|+.....++...+.+.+..-...+-+..+.++...--||..|..++.... +..|. .-|..+ .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~-~~~~~~~~kl~~-~ 175 (239)
T smart00721 98 DKLGEALKKLLQVEESLSQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKK-SKEKKKDEKLAK-A 175 (239)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hccCChhhhhhh-H
Confidence 45788888888888777555556666666665555555666677778888899999999987643 11111 002232 2
Q ss_pred cccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHH
Q 006738 165 TFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAAR 206 (633)
Q Consensus 165 ~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaR 206 (633)
.-..+..+..++...+++.-....|-..+..-....|..++.
T Consensus 176 e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~ 217 (239)
T smart00721 176 EEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIE 217 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 334566666666666666666666666666544444444443
No 79
>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAP3 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers wit
Probab=95.06 E-value=4.1 Score=42.70 Aligned_cols=180 Identities=22% Similarity=0.260 Sum_probs=106.6
Q ss_pred HHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhccc-------CCchhhhH--H----HHHHH
Q 006738 31 LDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTAL-------NDNEESGK--V----LLMLG 96 (633)
Q Consensus 31 ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~-------~dd~e~g~--v----~l~lg 96 (633)
||-=.++-.+ |+||+.-|..- +.=+-||+++|++|+.-++.|..- .|++-... + |-.--
T Consensus 10 ld~~~e~~i~~LqDLqdFyRrR-------AeIE~EYS~~L~KLA~~f~~K~~~~~~~~s~~d~~~~Sp~~~W~~lL~QT~ 82 (253)
T cd07684 10 LEQQSESRLQLLQDLQEFFRRK-------AEIELEYSRSLEKLAERFSSKIRTSREHQFKKDQQLLSPVNCWYLVLEQTR 82 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCccCHHHHHHHHHHHHH
Confidence 3333455445 88888888764 344678999999999999988421 11121111 1 11122
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCCc------------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 006738 97 KVQFELQKLVDAYRSHIFQTITIPS------------------ESLLN---ELQTVEEMKRQCDEKRNVCEYMLM---RQ 152 (633)
Q Consensus 97 k~q~EL~kL~d~yr~nI~~tIt~Ps------------------ESLLk---eLk~VeemKkqcDekr~~YE~m~~---~~ 152 (633)
...++=.+|-++|..||++-|+-=+ |.||+ ||+++-.+.+.|---=..-|.|+. ++
T Consensus 83 ~iskdh~~LSd~y~~~~~~rl~~~~ed~~Ri~kkskEi~~~~~eeLlkV~~EL~t~mKTY~~y~~e~~~ae~KL~eaE~q 162 (253)
T cd07684 83 RESRDHATLNDIFNNNVIVRLSQISEDVIRLFKKSKEIGLQMHEELLKVTNELYTVMKTYHMYHAESISAESKLKEAEKQ 162 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2334455677788887766665554 44554 788776666666532233334442 13
Q ss_pred HhhccccCCC-------Cc-cc----cHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhh
Q 006738 153 REKGRSKNGK-------GE-TF----SLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALK 220 (633)
Q Consensus 153 ~EKgr~k~~K-------~e-~~----i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLK 220 (633)
.||-+.|.+. .+ ++ +..-+++..+-.| +..-+++||++|.. -+-|-.++---|++.+||...|-
T Consensus 163 ~~k~~~k~~~~~~~~~r~e~~~~~rss~kK~~r~~eKrq--aK~~e~klK~~~ar--NeYll~l~a~Na~~~~yy~~dl~ 238 (253)
T cd07684 163 EEKQFNKSGDISSNLLRHEERPQRRSSVKKIEKMKEKRQ--AKYSENKLKCTKAR--NDYLLNLAATNAAVSKYYIHDVS 238 (253)
T ss_pred HHHHhccccchhhhhccccchhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHH
Confidence 3443322221 11 11 1244544445566 78889999998875 46777788888899999988765
Q ss_pred h
Q 006738 221 S 221 (633)
Q Consensus 221 s 221 (633)
.
T Consensus 239 ~ 239 (253)
T cd07684 239 D 239 (253)
T ss_pred H
Confidence 4
No 80
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=94.79 E-value=2.2 Score=39.71 Aligned_cols=156 Identities=13% Similarity=0.160 Sum_probs=90.4
Q ss_pred HhhhHHHHHHHHHHHhhhhhhhcc-cCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH----HHHHHH
Q 006738 58 TANSAYEFSESLQELGACLLEKTA-LNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN----ELQTVE 132 (633)
Q Consensus 58 ~~ns~yefsEaleemGscll~kta-~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk----eLk~Ve 132 (633)
...+.+.|+++|.++|..+-.... .+-=...|.++-.++.+..++ ...+..+|+.-|..-+ ..++ .++..+
T Consensus 66 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~---~~~~~~~vi~pl~~~~-~~~~~i~~~~kkr~ 141 (229)
T PF03114_consen 66 MKSPFEELADALIELGSEFSDDSSLGNALEKFGEAMQEIEEARKEL---ESQIESTVIDPLKEFL-KEFKEIKKLIKKRE 141 (229)
T ss_dssp HTHHHHHHHHHHHHHHHCTSTTCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHH
Confidence 346667999999999988743322 111255677777776665554 4555556655555555 5555 445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHH
Q 006738 133 EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQL 212 (633)
Q Consensus 133 emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl 212 (633)
+-.-.||..+..|+.... .+++....+.-...++..+.....+-+++..+.-.-.++=.-....++..-..||..=.
T Consensus 142 ~~~ldyd~~~~k~~k~~~---~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~ 218 (229)
T PF03114_consen 142 KKRLDYDSARSKLEKLRK---KKSKSSKEEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLY 218 (229)
T ss_dssp HHHHHHHHHHHHHHHCHT---TSSBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---hhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888887776542 12222112223334577777777777555554333233333445556666667777766
Q ss_pred HHHHHHhh
Q 006738 213 SFVKKALK 220 (633)
Q Consensus 213 ~fF~~GLK 220 (633)
..+.+..-
T Consensus 219 ~~l~~l~~ 226 (229)
T PF03114_consen 219 QILEELQP 226 (229)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666443
No 81
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=94.76 E-value=4.5 Score=42.35 Aligned_cols=181 Identities=22% Similarity=0.296 Sum_probs=112.2
Q ss_pred HHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCch-hh--h-------HHHHHHH---
Q 006738 31 LDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNE-ES--G-------KVLLMLG--- 96 (633)
Q Consensus 31 ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~-e~--g-------~v~l~lg--- 96 (633)
||-=.++-.+ |+||+.-|..- +.=+-||+++|++|+.-++.|+..-.|. .. | .++-.|=
T Consensus 10 ld~~~e~~~~lLqDlqdF~RrR-------AeIE~EYS~~L~KLa~~f~~K~~s~~~~~~~~~~s~~~S~~~~W~~lL~qT 82 (253)
T cd07683 10 LEQQTEMRVQLLQDLQDFFRKK-------AEIESEYSRNLEKLAERFMAKTRSTKDHQQYKKDQNLLSPVNCWYLLLNQV 82 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcccccccccCCCCCcchhhHHHHHHHHHHHH
Confidence 4444556556 89999888764 3345789999999999999886322111 11 1 1221111
Q ss_pred -hHHHHHHHHHHHHHHHhhhhccCCc------------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---
Q 006738 97 -KVQFELQKLVDAYRSHIFQTITIPS------------------ESLLN---ELQTVEEMKRQCDEKRNVCEYMLMR--- 151 (633)
Q Consensus 97 -k~q~EL~kL~d~yr~nI~~tIt~Ps------------------ESLLk---eLk~VeemKkqcDekr~~YE~m~~~--- 151 (633)
...++=.+|-++|..||+.-|+-=+ |.||+ ||++|-.+.+.|---...=|.++.+
T Consensus 83 ~~~sk~h~~LSd~y~~~~~~r~~~~~ed~~ri~kkskEi~~~~~eeLlkV~~EL~t~mKtY~~y~~e~~~ae~Klk~ae~ 162 (253)
T cd07683 83 RRESKDHATLSDIYLNNVIMRFMQISEDSTRMFKKSKEIAFQLHEDLMKVLNELYTVMKTYHMYHTESISAESKLKEAEK 162 (253)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445667777777666443222 44555 8888877777777555556666652
Q ss_pred HHhh--ccccCC----CCcc-----ccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhh
Q 006738 152 QREK--GRSKNG----KGET-----FSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALK 220 (633)
Q Consensus 152 ~~EK--gr~k~~----K~e~-----~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLK 220 (633)
|.|| ||++.+ +.+. ...--+|+..+-.| +..-+++||.+|.. -+-|-.++---|++.+||...|-
T Consensus 163 q~ek~~~ks~~~~~~~~~~~~~~r~~~~kk~~k~~eKrq--aK~~e~klK~tkAR--NEYLL~L~AaNA~~~~Yy~~Dl~ 238 (253)
T cd07683 163 QEEKQIGRSGDPVFHIRLEDRHQRRSSVKKIEKMKEKRQ--AKYSENKLKSIKAR--NEYLLTLEATNASVFKYYIHDLS 238 (253)
T ss_pred HHHHHhccccccccccccccchhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHH
Confidence 2222 122222 1111 11246777777778 88899999999875 36677788888899999988765
Q ss_pred hh
Q 006738 221 SL 222 (633)
Q Consensus 221 sL 222 (633)
.|
T Consensus 239 dL 240 (253)
T cd07683 239 DL 240 (253)
T ss_pred HH
Confidence 43
No 82
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=94.59 E-value=1.3 Score=45.20 Aligned_cols=102 Identities=13% Similarity=0.241 Sum_probs=74.9
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHH
Q 006738 31 LDELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYR 110 (633)
Q Consensus 31 ldEl~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr 110 (633)
+|..--+.+.+-.|=|.|..-+.+++. -+..|-+||.+||...+.... -.++|.||+..+.++++|+.=+..-.
T Consensus 15 meqFNP~lrnlv~lGk~Y~kA~~a~t~---aa~~Yf~Al~KiGe~A~~s~~---s~~LG~vLmqisev~r~i~~~le~~l 88 (215)
T cd07644 15 MEQFNPALENLVYLGNNYLRAFHALSE---AAEVYFSAIAKIGEQALQSLT---SQSLGEILIQMSETQRKLSADLEVVF 88 (215)
T ss_pred HHhcChHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677778888888665544433 345788999999999885533 57899999999999999988777766
Q ss_pred HHhhhhccCCcHHHHH-HHHHHHHHHHHH
Q 006738 111 SHIFQTITIPSESLLN-ELQTVEEMKRQC 138 (633)
Q Consensus 111 ~nI~~tIt~PsESLLk-eLk~VeemKkqc 138 (633)
+-.-+-|-.|+|-=++ |.+.+.+--|.|
T Consensus 89 k~FH~ell~~LEkk~elD~kyi~~s~KkY 117 (215)
T cd07644 89 QTFHVDLLQHMDKNTKLDMQFIEDSRRVY 117 (215)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6666777788888777 888887433333
No 83
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=94.32 E-value=6.1 Score=39.20 Aligned_cols=56 Identities=18% Similarity=0.064 Sum_probs=30.1
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 89 GKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYM 148 (633)
Q Consensus 89 g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m 148 (633)
..+.-.|..+..++.+..+++..++... ..+++.+ ++.++..|+-|++..++.+.-
T Consensus 90 ~~v~~~l~~~~~~~~~~rK~~~~~~~kl-~~~~~~~---~~~l~kskk~Y~~~~ke~~~a 145 (251)
T cd07653 90 SNVCKELKTLISELRQERKKHLSEGSKL-QQKLESS---IKQLEKSKKAYEKAFKEAEKA 145 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666555442 2222222 334455666666666665543
No 84
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=93.67 E-value=3.6 Score=36.16 Aligned_cols=75 Identities=11% Similarity=0.179 Sum_probs=47.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHH
Q 006738 38 SQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSH 112 (633)
Q Consensus 38 ~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~n 112 (633)
...|..|.+.++.++.-....+..+.+....+.++...++.-....|.++.....-.+.....++.+.++.|...
T Consensus 27 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (181)
T PF12729_consen 27 LYSLSQINQNVEEIYENNLPSIELLNDIRSNLQRIRRALRRYLLATDPEERQEIEKEIDEARAEIDEALEEYEKL 101 (181)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344777777777777777666777777777777776665433223355555555556666666666666666654
No 85
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=93.55 E-value=4.7 Score=41.02 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=81.7
Q ss_pred hHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchh---hhHHHHHHHhHHHHHHHH
Q 006738 30 QLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEE---SGKVLLMLGKVQFELQKL 105 (633)
Q Consensus 30 ~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e---~g~v~l~lgk~q~EL~kL 105 (633)
+|=-+.+.-.+ |++|+++|.-- +...-||+..|.+|...+. +....++.+ +..+|..+=.-+.-+.+.
T Consensus 9 ~l~~~~~~ei~lLe~i~~F~reR-------a~iE~EYA~~L~~L~kq~~-k~~~~~~~~~s~~~~sW~~iL~ete~~A~~ 80 (237)
T cd07657 9 ALLKRQDAELRLLETMKKYMAKR-------AKSDREYASTLGSLANQGL-KIEAGDDLQGSPISKSWKEIMDSTDQLSKL 80 (237)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhC-cCCCcccCCcChHHHHHHHHHHHHHHHHHH
Confidence 33344466666 99999999864 4456788999999988774 322122222 233333333333333333
Q ss_pred HHHHHHHhhhhccCCcHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 006738 106 VDAYRSHIFQTITIPSESLLNELQ----------------------TVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKG 163 (633)
Q Consensus 106 ~d~yr~nI~~tIt~PsESLLkeLk----------------------~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~ 163 (633)
......++...|.-++..|.+|++ .|+-.|+.|++.++++|.... +-||-=.+.
T Consensus 81 ~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~-k~e~a~~~~--- 156 (237)
T cd07657 81 IKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKS-KFEEAVVKG--- 156 (237)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc---
Confidence 444445555555555544444433 334567778888888777765 333332221
Q ss_pred ccccHHHHHHHHHhhHhhHhHH
Q 006738 164 ETFSLQQLQEAHDEYDQEATLF 185 (633)
Q Consensus 164 e~~i~eqle~~r~~fqEeaqmc 185 (633)
..++-++|+++..|++=...|
T Consensus 157 -~~~~~~~eKak~k~~~~~~k~ 177 (237)
T cd07657 157 -GRGGRKLDKARDKYQKACRKL 177 (237)
T ss_pred -ccchhhHHHHHHHHHHHHHHH
Confidence 235778899999998544444
No 86
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=93.33 E-value=4.2 Score=42.14 Aligned_cols=97 Identities=14% Similarity=0.259 Sum_probs=67.2
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 006738 36 QASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQ 115 (633)
Q Consensus 36 ~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~ 115 (633)
-+.+|+..|=+.|..-+.++ +--+..|..||.+||...+... .-.|+|.||+.++.+.++++.-+.....-..+
T Consensus 22 P~lrnlv~~G~~Y~kal~a~---~~a~~~y~dAl~Kige~A~~s~---gSkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~ 95 (232)
T cd07646 22 PSLRNFIAMGKNYEKALASV---TFAAKGYFDALVKMGELASESQ---GSKELGDVLFQMAEVHRQIQNQLEEMLKSFHN 95 (232)
T ss_pred hhHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666665444333 3334578999999999887442 25899999999999998887666666555566
Q ss_pred hccCCcHHHHH-HHHHHHHHHHHH
Q 006738 116 TITIPSESLLN-ELQTVEEMKRQC 138 (633)
Q Consensus 116 tIt~PsESLLk-eLk~VeemKkqc 138 (633)
-|..|+|-=++ |.+.+...-|.|
T Consensus 96 eli~pLE~k~E~D~k~i~a~~Kky 119 (232)
T cd07646 96 ELLTQLEQKVELDSRYLTAALKKY 119 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66669998888 888777443333
No 87
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=93.30 E-value=7 Score=39.39 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhh---hhccCCcHHHHHHHHHHHH--
Q 006738 59 ANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIF---QTITIPSESLLNELQTVEE-- 133 (633)
Q Consensus 59 ~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~---~tIt~PsESLLkeLk~Vee-- 133 (633)
+.=+.+|+..|.+|+.-...... .+-...+|..|-....-+....-.|..+|. .-|.-+.+.+.+.-|.+++
T Consensus 32 a~IEe~Yak~L~kLakk~~~~~~---~gt~~~~w~~i~~~~e~~a~~H~~l~~~L~~~~~~l~~~~~~~~k~rK~~k~~~ 108 (261)
T cd07648 32 ATIEETYSKALNKLAKQASNSSQ---LGTFAPLWLVLRVSTEKLSELHLQLVQKLQELIKDVQKYGEEQHKKHKKVKEEE 108 (261)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888888888876543221 233444444554444445555555555554 3333333333333333321
Q ss_pred ------------HHHHHHHHHHHHHHHHH
Q 006738 134 ------------MKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 134 ------------mKkqcDekr~~YE~m~~ 150 (633)
..++.+++++.|+..-.
T Consensus 109 ~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~ 137 (261)
T cd07648 109 SGTAEAVQAIQTTTAALQKAKEAYHARCL 137 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344677888886543
No 88
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=93.25 E-value=5.9 Score=35.44 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhH-HHHHHHhHHHHHHHHHHHHHHHhhhhccC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGK-VLLMLGKVQFELQKLVDAYRSHIFQTITI 119 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~-v~l~lgk~q~EL~kL~d~yr~nI~~tIt~ 119 (633)
+..|++.++.|+..+.+++....+...+.++||.+|. +.+-...+..+. .-..|..|. +..+-+..++....+.|..
T Consensus 2 ~~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~l~~~l~~~~-~~~~~l~~~~~~~~~~~~~ 79 (194)
T cd07307 2 LDELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQ-ELGKELPDLSNTDLGEALEKFG-KIQKELEEFRDQLEQKLEN 79 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCCCcccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4567777788888887777777777778888887774 322111111111 122222222 2222234445555555554
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006738 120 PSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRS 158 (633)
Q Consensus 120 PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~ 158 (633)
..-.-|+++.. ..-+...+.++.|+.++. ..|+-+.
T Consensus 80 ~v~~pL~~~~~--~~~~~~~~~~k~~~~~~~-~yd~~~~ 115 (194)
T cd07307 80 KVIEPLKEYLK--KDLKEIKKRRKKLDKARL-DYDAARE 115 (194)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 44444443321 223355566666666654 3344333
No 89
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.24 E-value=11 Score=38.45 Aligned_cols=132 Identities=15% Similarity=0.079 Sum_probs=85.2
Q ss_pred cchhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccC--------Cc---hhhhHHHH
Q 006738 26 RPLAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALN--------DN---EESGKVLL 93 (633)
Q Consensus 26 ~p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~--------dd---~e~g~v~l 93 (633)
.|. ++.+.....++ +..+-++|..|...+-+.+.+..+.+..+.+||.+|-.=+... |. ..+..+|-
T Consensus 16 ~p~-~~~~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 94 (246)
T cd07597 16 LPP-DFQEQWANSRERIRRLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLS 94 (246)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHH
Confidence 353 45566666666 8888888888888888888888888888888887774322211 11 56777888
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhcccc
Q 006738 94 MLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKR--------QCDEKRNVCEYMLMRQREKGRSK 159 (633)
Q Consensus 94 ~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKk--------qcDekr~~YE~m~~~~~EKgr~k 159 (633)
-+|+.-..+..+...+...+.+.+.-++...+.=|.-++||=. +.+..-+-++.+-. +.++-|.+
T Consensus 95 ~~s~~~~~~s~~~~~~a~~~~~~vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~-kl~~l~~~ 167 (246)
T cd07597 95 SLSKHFQLLSDLSEDEARAEEDGVLEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKK-KLESLRAK 167 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH-HHHHhhcC
Confidence 8888888888888888888888766555555544444444422 22233344444433 55555555
No 90
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.83 E-value=8.1 Score=39.35 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH
Q 006738 59 ANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN 126 (633)
Q Consensus 59 ~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk 126 (633)
+.=+.+|+..|.+++...+ + ...-+-...++..|-.-+.=+..++-.+..+|..-|--|+....+
T Consensus 32 a~IEe~Yak~L~klak~~~-~--~~e~Gtl~~sw~~~~~e~E~~a~~H~~la~~L~~ev~~~l~~f~~ 96 (233)
T cd07649 32 IKIEEEYAKNLSKLSQSSL-A--AQEEGTLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEKPLLNFRE 96 (233)
T ss_pred HHHHHHHHHHHHHHHhhhc-C--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788889999876543 2 112233334444444444444445555555666555555554443
No 91
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=92.05 E-value=4 Score=43.46 Aligned_cols=157 Identities=17% Similarity=0.245 Sum_probs=102.0
Q ss_pred HhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHH
Q 006738 58 TANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKR 136 (633)
Q Consensus 58 ~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKk 136 (633)
-.||.+..++.|-+-|+-|=.-| --|++|++.|..++-|-.--..+...-.-..-.|+-..|. |.|++..=.|
T Consensus 87 R~nN~ElL~qyM~dAg~efGptT------pYG~aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlEGD~KTI~KERk 160 (375)
T KOG3725|consen 87 RQNNLELLSQYMTDAGEEFGPTT------PYGSALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLEGDMKTIQKERK 160 (375)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHH
Confidence 57788888888888887774332 3799999999998888666555555444445568899998 9999986677
Q ss_pred HHHHHHHHHHHHHHHHHhhcc------ccCCCCcc-c----cHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHH
Q 006738 137 QCDEKRNVCEYMLMRQREKGR------SKNGKGET-F----SLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAA 205 (633)
Q Consensus 137 qcDekr~~YE~m~~~~~EKgr------~k~~K~e~-~----i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaa 205 (633)
-..-||-|.++--+ +.-|-| -+|.|.-| + .+++|.-+.-||+..+.+--.+|.-|-. --..-|.-+-
T Consensus 161 lLqnkRLDLDAcKs-RLKKAKaae~q~~rN~~~s~~~~ie~aEqelRvaQ~EFDrQaEiTrLLLEGIss-tH~nhLrCL~ 238 (375)
T KOG3725|consen 161 LLQNKRLDLDACKS-RLKKAKAAELQTVRNSKTSGGFTIEQAEQELRVAQAEFDRQAEITRLLLEGISS-THNNHLRCLR 238 (375)
T ss_pred HHhhcccChHHHHH-HHHHhhhhhhhccccccccCcchHhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh-hhhhHHHHHH
Confidence 77888888776544 222222 24444333 2 2366777777888555544444443322 2223345556
Q ss_pred HHHHHHHHHHHHHhhhh
Q 006738 206 RHHAAQLSFVKKALKSL 222 (633)
Q Consensus 206 RhhaAQl~fF~~GLKsL 222 (633)
.|-.|||.||-++....
T Consensus 239 dFVeaQmtyYAQcyq~M 255 (375)
T KOG3725|consen 239 DFVEAQMTYYAQCYQLM 255 (375)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67789999998887543
No 92
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=91.41 E-value=5.4 Score=40.67 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 006738 43 DMRGCYDSLLSAAAATANSAYEFSESLQELG 73 (633)
Q Consensus 43 ~Mk~~ydsllsaaaa~~ns~yefsEaleemG 73 (633)
-++++++.+....-+.++.-.+|+..|++|-
T Consensus 57 tl~~~w~~~~~~~E~~a~~H~~l~~~L~~~~ 87 (261)
T cd07674 57 TFAPMWEVFRVSSDKLALCHLELMRKLNDLI 87 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777666666666666666666543
No 93
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=90.87 E-value=18 Score=35.90 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhh---HHHHHHHhHHHHHHHHHHHHHHHhhhhc
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESG---KVLLMLGKVQFELQKLVDAYRSHIFQTI 117 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g---~v~l~lgk~q~EL~kL~d~yr~nI~~tI 117 (633)
+++|...|+- -+.-..+|+..|.+|+.-++.+... .++..| .+|-.|-.-+..+......+..+|.+.|
T Consensus 21 ~~~l~~f~ke-------Ra~iE~eYak~L~kLa~k~~~~~~~-~~~~~~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v 92 (251)
T cd07653 21 LERYGKFVKE-------RAAIEQEYAKKLRKLVKKYLPKKKE-EDEYSFSSVKAFRSILNEVNDIAGQHELIAENLNSNV 92 (251)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcccCC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665544 3566789999999999988754321 122333 5555555555556677778888888888
Q ss_pred cCCcHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Q 006738 118 TIPSESLLNELQTV---------------EEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 118 t~PsESLLkeLk~V---------------eemKkqcDekr~~YE~m~~ 150 (633)
.-|+..+.++++.. ..+-+..++.|+.|+....
T Consensus 93 ~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~k 140 (251)
T cd07653 93 CKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFK 140 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887754332 2444566778888887654
No 94
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=90.82 E-value=25 Score=37.78 Aligned_cols=171 Identities=20% Similarity=0.253 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHH----HHHHHHHhhhh
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKL----VDAYRSHIFQT 116 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL----~d~yr~nI~~t 116 (633)
|.+.+..|.+++.+|-|-..-.+...++=..||..+-.= ...++++-.-|-+=+..|+=|.|= +..+++-|..
T Consensus 134 Lrd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadL--s~K~~elq~eft~nseTqr~l~kngetLl~alnfFIsS- 210 (341)
T KOG3876|consen 134 LRDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADL--SQKSPELQEEFTYNSETQRLLGKNGETLLGALNFFISS- 210 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCHHHHHHhCcCHHHHHHHhhhHHHHHHHHHHHHHH-
Confidence 789999999999999998888999999988888877311 235677777777766666655542 2222222211
Q ss_pred ccCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHH-------HHhhHhhHhHHH
Q 006738 117 ITIPSESLLNELQTVEE---MKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEA-------HDEYDQEATLFV 186 (633)
Q Consensus 117 It~PsESLLkeLk~Vee---mKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~-------r~~fqEeaqmc~ 186 (633)
.+-|.| |+++| .-+||+-+|..|+.-++ -+|-- -++-....+.--++.+ ++.|+----=..
T Consensus 211 ----vnTl~n--kTi~DTL~Ti~qyEsARiEyDayR~-Dle~~--~l~P~~~~t~~~le~aq~~~q~hkekYeKlrnDva 281 (341)
T KOG3876|consen 211 ----VNTLVN--KTIEDTLMTIKQYESARIEYDAYRT-DLEEL--TLGPRDALTKNLLEGAQEKFQAHKEKYEKLRNDVA 281 (341)
T ss_pred ----HHHHHh--hhhHHHHHHHHHhhhhhhhhhhhhh-hHHHh--cCCccccccccccHHHHHHHHHHHHHHHHhhhhHH
Confidence 112222 45664 45899999999999887 44432 2222223333223333 334441111111
Q ss_pred HHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 006738 187 FRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLE 223 (633)
Q Consensus 187 frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE 223 (633)
..+|=|...+-.=+-.|++.+|.|=--||.---|.||
T Consensus 282 iKmkfLeENrIkVmh~QL~llhnAiaAYfsGNak~LE 318 (341)
T KOG3876|consen 282 IKMKFLEENRIKVMHKQLELLHNAIAAYFSGNAKQLE 318 (341)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 2233344444334445555555555555555555555
No 95
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.44 E-value=19 Score=39.41 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHH----hhh
Q 006738 40 DMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSH----IFQ 115 (633)
Q Consensus 40 dm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~n----I~~ 115 (633)
+++++++-|+.+...+...-......-+.|.+++.-+ -+=++.+..+-..+.+...++..+-+.+..+ ...
T Consensus 214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i-----~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp 288 (562)
T PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI-----EDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCP 288 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3666777777777666665555555555555555321 0113445566666666666666665554433 334
Q ss_pred hccCCcHHH
Q 006738 116 TITIPSESL 124 (633)
Q Consensus 116 tIt~PsESL 124 (633)
+...+++++
T Consensus 289 ~C~~~~~~~ 297 (562)
T PHA02562 289 TCTQQISEG 297 (562)
T ss_pred CCCCcCCCc
Confidence 444444443
No 96
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=90.32 E-value=13 Score=37.15 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHH----H---
Q 006738 59 ANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQT----V--- 131 (633)
Q Consensus 59 ~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~----V--- 131 (633)
+.=+.+|+..|.+|+.-.+... +.+-...+|..|-.....+....-.+..+|.+-|.-|+..+.++++. +
T Consensus 32 a~iE~eYak~L~kLakk~~~~~---~~gsl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~ 108 (236)
T cd07651 32 ASIEEEYAKRLEKLSRKSLGGS---EEGGLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSH 108 (236)
T ss_pred HHHHHHHHHHHHHHHccccCCC---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999887766321 23456667777766677777777788888877777777666554321 1
Q ss_pred --------HHHHHHHHHHHHHHHHHHH
Q 006738 132 --------EEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 132 --------eemKkqcDekr~~YE~m~~ 150 (633)
.++.+.++++++.|+..-.
T Consensus 109 ~~k~~k~~~~~~~~l~KaK~~Y~~~c~ 135 (236)
T cd07651 109 MEKLLKKKQDQEKYLEKAREKYEADCS 135 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1344567788888886653
No 97
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=88.94 E-value=30 Score=35.54 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=52.3
Q ss_pred HHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhccc----CCchh---hhHHHHHHHhHHHHHH
Q 006738 32 DELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTAL----NDNEE---SGKVLLMLGKVQFELQ 103 (633)
Q Consensus 32 dEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~----~dd~e---~g~v~l~lgk~q~EL~ 103 (633)
+.=.+..-+ |++|++.|.-- +.-.-||+.+|++|..-++.|..- ..+.. +..+|..+=.-+..+.
T Consensus 11 ~~~te~~i~lLed~~~F~r~R-------aeIE~EYs~~L~kL~k~~~~K~~~~~~~~~~~~~~s~~~~W~~lL~qt~~~a 83 (241)
T cd07656 11 DLRTEAQVQLLADLQDYFRRR-------AEIELEYSRSLEKLADRFSSKHKNEKSKREDWSLLSPVNCWNTLLVQTKQES 83 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhccccccccccccccCcCCHHHHHHHHHHHHHHHH
Confidence 333455555 89999988764 455678899999999998777421 11222 4445555555555444
Q ss_pred HHHHHHHHHhhhhccCCcHHHHHHH
Q 006738 104 KLVDAYRSHIFQTITIPSESLLNEL 128 (633)
Q Consensus 104 kL~d~yr~nI~~tIt~PsESLLkeL 128 (633)
+-...+-.++.+.|.-.+..|.+|+
T Consensus 84 ~~h~~lse~l~~~i~~~l~~l~~d~ 108 (241)
T cd07656 84 RDHSTLSDIYSNNLVQRLGQMSEDL 108 (241)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444444444444444454454443
No 98
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=87.60 E-value=34 Score=34.54 Aligned_cols=171 Identities=19% Similarity=0.253 Sum_probs=100.3
Q ss_pred HHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHH
Q 006738 32 DELAQASQD-MQDMRGCYDSLLSAAAATANSA--------YEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFEL 102 (633)
Q Consensus 32 dEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~--------yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL 102 (633)
|.=+++.+. +.+|-.+++.|+..+..++-.- ..+-+|+..||.||- --...+.....+|+-.+|.+-.++
T Consensus 3 e~~~d~f~~f~~~md~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~~af~-~d~~~~~t~Ls~Al~~~g~~~e~I 81 (199)
T cd07626 3 EQQVDAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTAFE-LDETPTSVPLTQAIKHTGQAYEEI 81 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHc-cCCCccchHHHHHHHHHHHHHHHH
Confidence 445666666 8999999999999988866543 345566777777763 111124566888888888888888
Q ss_pred HHHHHHHHHHhhhhccCCcHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHH
Q 006738 103 QKLVDAYRSHIFQTITIPSESLLNELQT----VE----EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEA 174 (633)
Q Consensus 103 ~kL~d~yr~nI~~tIt~PsESLLkeLk~----Ve----emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~ 174 (633)
-.|+..--.+=+ +|+-.+|+|-++ +. .-|.-+.+ |++-+.++. | | | +...|++..
T Consensus 82 g~l~~eQa~~D~----~~l~E~L~eY~gll~~~pdi~~~~k~al~K-~kE~~r~~~---e-g-----k---~~~~e~~ev 144 (199)
T cd07626 82 GELFAEQPKHDL----IPLLDGLHEYKGLLSTFPDIIGVHKGAVQK-VKECERLVD---E-G-----K---MSSAELEEV 144 (199)
T ss_pred HHHHHHhhHhhH----HHHHHHHHHHHhHHHhhhHHHHHHHHHHHH-HHHHHHHHH---h-c-----c---ccHHHHHHH
Confidence 777776543322 334455555444 22 12222222 222332221 2 2 2 455677666
Q ss_pred HHhhHhhHhHHHHHHh-hh---ccCCchhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006738 175 HDEYDQEATLFVFRLK-SL---KQGQSRSLLTQAARHHAAQLSFVKKALKSLEA 224 (633)
Q Consensus 175 r~~fqEeaqmc~frLK-sL---Kqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~ 224 (633)
.+.|+.- .|-++ |+ ..-+-.|+=..+..|=..|..||++-...||.
T Consensus 145 ~~r~d~I----S~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI~fyqqI~~kl~~ 194 (199)
T cd07626 145 KRRTDVI----SYALLAEINHFHRERVRDFKSMMRNYLQQQIEFYQKIAAKLEE 194 (199)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666522 12222 32 23345666666777778899999886666654
No 99
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=86.85 E-value=26 Score=34.23 Aligned_cols=146 Identities=22% Similarity=0.173 Sum_probs=94.7
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 006738 36 QASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQ 115 (633)
Q Consensus 36 ~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~ 115 (633)
...+-+++-.++.+++++-+.....|+-..+|=|+.++.+-++.+-++.-+++-..+. .|.--.|..++.+++.
T Consensus 5 ~~f~~~~~~~~~W~~~~~~~~~~l~sl~nL~eqL~al~~~~~~~~pL~~fpdl~~rL~--~Kq~~ale~vl~~L~e---- 78 (168)
T PF15011_consen 5 KCFRKVEEQMEKWDSALSRCLPLLSSLANLAEQLQALQNVKNYGTPLRSFPDLQERLR--RKQLEALETVLAKLRE---- 78 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccccHHHHHH--HHHHHHHHHHHHHHHH----
Confidence 3455577778889999999999999999999999999999888876776555544332 2333334444444332
Q ss_pred hccCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--H-HHHhhccccCCCCccccH--HHHHHHHHhhHhhHhHHHHHH
Q 006738 116 TITIPSESLLNELQTVE-EMKRQCDEKRNVCEYML--M-RQREKGRSKNGKGETFSL--QQLQEAHDEYDQEATLFVFRL 189 (633)
Q Consensus 116 tIt~PsESLLkeLk~Ve-emKkqcDekr~~YE~m~--~-~~~EKgr~k~~K~e~~i~--eqle~~r~~fqEeaqmc~frL 189 (633)
.|.+|+.|- ++++++...++.|+... . --..-...+.+=.-++.. |=|+...++|+.+...=-+.|
T Consensus 79 --------~l~~l~~v~~~l~~~~~~~~~l~~~~~~~~~l~~~~~~~r~~~~PSlAdmLewl~di~r~y~~~yl~k~~lL 150 (168)
T PF15011_consen 79 --------TLEELQKVRDSLSRQVRDVFQLYEQHAGLDELSLKALQQRSGVCPSLADMLEWLQDIERMYRSEYLLKKSLL 150 (168)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245666666 99999999999999654 1 000111112222222222 778888899997766666666
Q ss_pred hhhccC
Q 006738 190 KSLKQG 195 (633)
Q Consensus 190 KsLKqg 195 (633)
..|.-+
T Consensus 151 ~~l~~~ 156 (168)
T PF15011_consen 151 SSLSWD 156 (168)
T ss_pred HhcCcc
Confidence 666444
No 100
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=86.77 E-value=20 Score=37.09 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=42.7
Q ss_pred hhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHH
Q 006738 29 AQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQ 103 (633)
Q Consensus 29 a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~ 103 (633)
.+|..+.+.-.+ |++|+++|.-= +...-||++.|.+|..-+. +....+.+.++-|+--+..+-.|+.
T Consensus 8 e~l~k~q~~ei~lLE~i~~f~~eR-------akiEkEYA~~L~~L~kq~~-kk~~~~~~~~s~v~~sW~~vl~qte 75 (234)
T cd07686 8 EALLKLQDWELRLLETVKKFMALR-------VKSDKEYASTLQNLCNQVD-KESTSQLDYVSNVSKSWLHMVQQTE 75 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc-ccCcccccchhhHHHHHHHHHHHHH
Confidence 456666677777 99999999753 5567889999999988763 3333333445554334444444444
No 101
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=86.76 E-value=39 Score=34.35 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=52.1
Q ss_pred HHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHH
Q 006738 57 ATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTV 131 (633)
Q Consensus 57 a~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~V 131 (633)
.=++=+.+|+-.|.+++.-+. +......+-...+|..|..-+.-+..++-.+..+|.+.|.-|+..+.+|++.-
T Consensus 30 ERa~IE~~YAK~L~kLa~k~~-k~~~~~~Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~ 103 (239)
T cd07658 30 ERAELELNYAKGLSKLSGKLS-KASKSVSGTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKT 103 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667899999999998763 22211224555566666666666677788888889988889999998876444
No 102
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=86.43 E-value=47 Score=34.99 Aligned_cols=178 Identities=15% Similarity=0.166 Sum_probs=87.0
Q ss_pred HHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccC--CchhhhHHHHHHHhHHHHHHHHHH
Q 006738 31 LDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALN--DNEESGKVLLMLGKVQFELQKLVD 107 (633)
Q Consensus 31 ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~--dd~e~g~v~l~lgk~q~EL~kL~d 107 (633)
|+.=.+...| |++|++-|+-- +.-.-||+.+|++|...++.|.... ++.+-.+-.+-|-.+=.|+.....
T Consensus 10 L~~~~~~~~~~le~~~~f~k~R-------~~iE~eYa~~L~~L~k~~~~k~~~~~~~e~~~~~~~~s~~~~~~e~~~~a~ 82 (263)
T cd07678 10 LQTKQQRDAELLEDIRSYSKQR-------AAIEREYGQALQRLASQFLKRDWHRGGNETEMDRSVRTVWGAWREGTAATG 82 (263)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHccccCCCCchhhhhccccchHHHHHHHHHHHHH
Confidence 4444555666 88888887754 3445677999999999999886332 222211111111112222222222
Q ss_pred HHH---HHhhhh-ccCCcH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cc
Q 006738 108 AYR---SHIFQT-ITIPSE----------------------SLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGR--SK 159 (633)
Q Consensus 108 ~yr---~nI~~t-It~PsE----------------------SLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr--~k 159 (633)
.-+ .||... |..+.+ .|++=++.++-.||.|.+-+.+=+.......|-++ .|
T Consensus 83 Q~~~~~~~~~~~~~~e~~~~~r~~ke~~~KK~~e~~~~lQ~eL~~~~keL~ksKK~Y~~~~~ea~~A~~K~~e~e~k~~K 162 (263)
T cd07678 83 QGRVTRLEAYRRLRDEAGKTGRSAKEQVLKKSTEQLQKAQAELLETVKELSKSKKLYGQLERVSEVAKEKAADVEARLNK 162 (263)
T ss_pred HHHHHHHHHHHhhhhhHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111 111111 121221 11111223334556665555553333222222222 23
Q ss_pred CCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHh
Q 006738 160 NGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKAL 219 (633)
Q Consensus 160 ~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GL 219 (633)
..+.-...+-++++...-|+ .++-+|..|..+.+ -+-|-++...-+.|.+||..-|
T Consensus 163 ~~~~~~~sk~~~eK~~~K~~--~~~~~~~~k~~~ar--NeYll~L~aaNa~q~~YY~~dL 218 (263)
T cd07678 163 SDHGIFHSKASLQKLSAKFS--AQSAEYSQQLQAAR--NEYLLNLVAANAHLDHYYQEEL 218 (263)
T ss_pred hhhhccccHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 33333445678888666665 55656666655322 1556666667777777777543
No 103
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=85.31 E-value=49 Score=34.18 Aligned_cols=127 Identities=11% Similarity=0.138 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHHHHhhhhhhhcccCCchh----hhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHH--
Q 006738 59 ANSAYEFSESLQELGACLLEKTALNDNEE----SGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVE-- 132 (633)
Q Consensus 59 ~ns~yefsEaleemGscll~kta~~dd~e----~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~Ve-- 132 (633)
+.=+-+|+.-|.++..-+..+....++.. +-.+|+.+-.--..+..+...+..++.+-|.-|+..|+.+++.-.
T Consensus 32 a~IEkeYakkL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~ 111 (253)
T cd07676 32 TEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKS 111 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778899999888877743222111 123344333333345688899999999999999988888665422
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHhhccccC--CCCc-cccHHHHHHHHHhhHhhHhHHH
Q 006738 133 -------------EMKRQCDEKRNVCEYMLMRQREKGRSKN--GKGE-TFSLQQLQEAHDEYDQEATLFV 186 (633)
Q Consensus 133 -------------emKkqcDekr~~YE~m~~~~~EKgr~k~--~K~e-~~i~eqle~~r~~fqEeaqmc~ 186 (633)
.+-++.++.++.|+.--. ..|+-+.+. ++.+ .+++.++++.+..++.-.+.++
T Consensus 112 ~~~~~~k~qk~~~~~~~~lekaKk~Y~~ack-e~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e 180 (253)
T cd07676 112 HFHDGRKAQQHIETCWKQLESSKRRFERDCK-EADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAE 180 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 233455667777775442 223333322 2222 4566666666666665444443
No 104
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=84.45 E-value=30 Score=31.32 Aligned_cols=98 Identities=19% Similarity=0.269 Sum_probs=61.9
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccC-CchhhhHHHHHHHhHHHHHHHHHHHHHHHhh
Q 006738 36 QASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALN-DNEESGKVLLMLGKVQFELQKLVDAYRSHIF 114 (633)
Q Consensus 36 ~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~-dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~ 114 (633)
+...+|..|+..|+.+. -+.++.+|..+|.+|=.+...-.... ..-+...+. +..++..|.+|++..-
T Consensus 2 dl~~~M~~m~~~~k~~~-----~a~~~~e~~~~l~~m~~~a~~ak~~~P~~~~~d~~~--~~~Y~~Gl~~li~~id---- 70 (103)
T PF07361_consen 2 DLEKNMKQMKKNYKQAA-----KADDAAEMKTALDKMRAAAEDAKQGKPPKLEGDSAE--VKDYQEGLDKLIDQID---- 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHH-----HSSSHHHHHHHHHHHHHHHHHHTTTS-GGGTTTSHH--HHHHHHHHHHHHHHHH----
T ss_pred cHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHhhcCCccccccchH--HHHHHHHHHHHHHHHH----
Confidence 34567999999998764 46899999999999998876442211 101101121 2445555555544332
Q ss_pred hhccCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 006738 115 QTITIPSESLLN--ELQTVEEMKRQCDEKRNVCEYML 149 (633)
Q Consensus 115 ~tIt~PsESLLk--eLk~VeemKkqcDekr~~YE~m~ 149 (633)
. .+.+++ +|...+..=+.++.-|+.|+-++
T Consensus 71 ~-----a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~ 102 (103)
T PF07361_consen 71 K-----AEALAEAGKLDEAKAALKKLDDLRKEYHKKF 102 (103)
T ss_dssp H-----HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHCCCHHHHHHHHHHHHHHHHHHhHhc
Confidence 2 255666 77777766677788888887654
No 105
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=83.88 E-value=55 Score=33.55 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHH---HHHHHHHHHHHhhhhc
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFE---LQKLVDAYRSHIFQTI 117 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~E---L~kL~d~yr~nI~~tI 117 (633)
+.+|.++|+- =++=+.+|+..|.+|+.-...+. .+..+.|+..--+-.+-.| +..+...+..+|.+-|
T Consensus 21 ~~el~~f~kE-------Ra~IE~~Yak~L~kLakk~~~~~--~~~~e~gsl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v 91 (258)
T cd07655 21 CDDLMKMVQE-------RAEIEKAYAKKLKEWAKKWRDLI--EKGPEYGTLETAWKGLLSEAERLSELHLSIRDKLLNDV 91 (258)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhh--ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555543 24446778999999998765432 2333455555444444444 5556667777777777
Q ss_pred cCCcHHHHHH
Q 006738 118 TIPSESLLNE 127 (633)
Q Consensus 118 t~PsESLLke 127 (633)
.-|+..+.+|
T Consensus 92 ~~~i~~~~~e 101 (258)
T cd07655 92 VEEVKTWQKE 101 (258)
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 106
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.80 E-value=53 Score=33.30 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=40.5
Q ss_pred cccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 006738 165 TFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVD 226 (633)
Q Consensus 165 ~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~le 226 (633)
.=+..+|+.+-..|+.+ |++.||.- +.+++.-.+.||+--+..|...+..|..+.
T Consensus 152 ~r~s~~l~ee~~rFe~~------k~~d~K~~-l~~fv~~~m~~~~kale~~~~~~~~~~~~~ 206 (211)
T cd07598 152 NRSTKELEEQMDNFEKQ------KIRDIKTI-FSDFVLIEMLFHAKALEVYTAAYQDIQNID 206 (211)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33457888888888833 56666543 567888888888888889999998888764
No 107
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=83.29 E-value=11 Score=39.81 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=45.7
Q ss_pred HHHhHHHHHHHHHHHHHHHh--hhhccCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc
Q 006738 94 MLGKVQFELQKLVDAYRSHI--FQTITIPSESLLNEL-QTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETF 166 (633)
Q Consensus 94 ~lgk~q~EL~kL~d~yr~nI--~~tIt~PsESLLkeL-k~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~ 166 (633)
+||++..-+.++|..|.+-= ++.|..=+++=-.+| +.+..+.+-|++-|+.|...-. +|.-|+.+...-+.-
T Consensus 78 lf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~-~I~ag~~~~~~l~~~ 152 (333)
T PF05816_consen 78 LFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEK-YIAAGELKLEELEAE 152 (333)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 58888889999999995422 222222222222222 3344677778888988887654 888887766665554
No 108
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.92 E-value=74 Score=39.39 Aligned_cols=138 Identities=16% Similarity=0.185 Sum_probs=78.7
Q ss_pred chhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhcc---CCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccC
Q 006738 85 NEESGKVLLMLGKVQFELQKLVDAYRSHIFQTIT---IPSESLLNELQTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKN 160 (633)
Q Consensus 85 d~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt---~PsESLLkeLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~ 160 (633)
+.+........-..+.++......-+..+..-+. -=+..+.++++..+ +++++.-+.+..+..... .++.. ..
T Consensus 655 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~-~~~~~--~d 731 (1201)
T PF12128_consen 655 EQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQ-ELEAE--LD 731 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HH
Confidence 4566666666666666666666666665554432 23333333555444 555555555444433332 22222 11
Q ss_pred CCCccccHHHHHHHHHhhHhhHhHHHHHHh-hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHH
Q 006738 161 GKGETFSLQQLQEAHDEYDQEATLFVFRLK-SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHV 229 (633)
Q Consensus 161 ~K~e~~i~eqle~~r~~fqEeaqmc~frLK-sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephV 229 (633)
.+- ..+.+++++.+.+|+++.+=|.=.++ +| .|+|+| +..+.-+..+..=..+-|+.+|.-++-|
T Consensus 732 ~~i-~~i~~~i~~~~~~~~~~~~~le~~~~~eL-~~~GvD--~~~I~~l~~~i~~L~~~l~~ie~~r~~V 797 (1201)
T PF12128_consen 732 EQI-EQIKQEIAAAKQEAKEQLKELEQQYNQEL-AGKGVD--PERIQQLKQEIEQLEKELKRIEERRAEV 797 (1201)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCC--HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 121 23568999999999988888887777 78 788888 4555555555555555555554444433
No 109
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=82.19 E-value=51 Score=33.17 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 006738 42 QDMRGCYDSLLSAAAATANSAYEFSESLQELG 73 (633)
Q Consensus 42 ~~Mk~~ydsllsaaaa~~ns~yefsEaleemG 73 (633)
--|+.+++.|+...-..++.-..|++.|+++.
T Consensus 56 gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~v 87 (239)
T cd07647 56 GTLKSSWDSLRKETENVANAHIQLAQSLREEA 87 (239)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777776654
No 110
>PF11985 DUF3486: Protein of unknown function (DUF3486); InterPro: IPR021874 This entry is represented by Bacteriophage Mu, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=82.04 E-value=51 Score=31.92 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=66.1
Q ss_pred HhhhHHHHHHHH---HHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccC-----CcHHHHHHHH
Q 006738 58 TANSAYEFSESL---QELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITI-----PSESLLNELQ 129 (633)
Q Consensus 58 ~~ns~yefsEal---eemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~-----PsESLLkeLk 129 (633)
|+....+..+.| ++++.-+++....+++++.+.+++.+... .+|+-+..-....... .+..|.+.+.
T Consensus 55 Y~~~~~~~~~~lr~are~a~al~~~~~~~~~~~~~~al~~~~~~-----~~f~~l~~~~~~~~~~~~~~k~l~~la~~~~ 129 (180)
T PF11985_consen 55 YAQRFEEVLERLREAREIAEALAEELGDEPEDDVTEALIEMLQT-----LLFEALMSAQEEDEEDDDPPKDLMKLAKALA 129 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-----HHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 555555555555 45777788777766889999998887654 2333333333333322 4566666666
Q ss_pred HHH---HHHHHHHHH-HHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhh
Q 006738 130 TVE---EMKRQCDEK-RNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEY 178 (633)
Q Consensus 130 ~Ve---emKkqcDek-r~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~f 178 (633)
.+. -.++.++.+ |+.++..+.+..| +.+|..|++.|.+++-|+++
T Consensus 130 ~l~~A~~~~~k~~~~ir~~~~~~~~~~~e----~~~~~~Gls~e~~~~ir~~i 178 (180)
T PF11985_consen 130 RLSRASVYSKKRRAEIRKKAAAEAAAAAE----EAAKEGGLSAETVERIRREI 178 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCCHHHHHHHHHHh
Confidence 665 233333322 3335554443233 34677888999998888765
No 111
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.82 E-value=66 Score=36.34 Aligned_cols=127 Identities=23% Similarity=0.314 Sum_probs=65.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHH-HHHHHHH-----HHH-HHHHHHHHHHHhhccccCCCC
Q 006738 91 VLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVE-EMKRQCD-----EKR-NVCEYMLMRQREKGRSKNGKG 163 (633)
Q Consensus 91 v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~Ve-emKkqcD-----ekr-~~YE~m~~~~~EKgr~k~~K~ 163 (633)
++-.|+.+..+|.+++|.-...+.+. +++++-+|+.+. ++...++ ..+ ..-+..+. .+.+-++|.+.
T Consensus 249 ~~~~l~~~~~~l~~~~d~~~~~~~~~----l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~-~l~~LkrKyg~- 322 (563)
T TIGR00634 249 LLEGLGEAQLALASVIDGSLRELAEQ----VGNALTEVEEATRELQNYLDELEFDPERLNEIEERLA-QIKRLKRKYGA- 322 (563)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHHHHHhCC-
Confidence 67888888888888855444444443 344444555544 4444322 222 33444444 55555566553
Q ss_pred ccccHHHHHHHHHhhHhhHhHHHHH---HhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHH
Q 006738 164 ETFSLQQLQEAHDEYDQEATLFVFR---LKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVK 230 (633)
Q Consensus 164 e~~i~eqle~~r~~fqEeaqmc~fr---LKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk 230 (633)
..+++-+.+++.++|+..+... +..|++. ..-+.....-++.+++-.|+ +..+.++-.|.
T Consensus 323 ---s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~e--l~~l~~~l~~~a~~Ls~~R~--~~a~~l~~~v~ 385 (563)
T TIGR00634 323 ---SVEEVLEYAEKIKEELDQLDDSDESLEALEEE--VDKLEEELDKAAVALSLIRR--KAAERLAKRVE 385 (563)
T ss_pred ---CHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4566666666666666554443 3333321 12233334445666666654 33444444443
No 112
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=80.79 E-value=40 Score=33.04 Aligned_cols=87 Identities=16% Similarity=0.296 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHH
Q 006738 45 RGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESL 124 (633)
Q Consensus 45 k~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESL 124 (633)
.+.|+.|+.+. .-....+|.+.|++|-....+. ...+..+.-+|..|+-.|.+=..++....... .++
T Consensus 90 ~syY~~L~~~i--d~~~~~~~~~~i~~L~~~i~~~-----q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l-----~~~ 157 (184)
T PF05791_consen 90 QSYYDTLVEAI--DQKDKEDLKEIIEDLQDQIQKN-----QDKVQALINELNDFKDKLQKDSRNLKTDVDEL-----QSI 157 (184)
T ss_dssp HHHHHHHHHHH--HHT-HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHH
Confidence 56666666666 6666777777777765544322 56667777777777777777777766666443 455
Q ss_pred HH-HHHHHHHHHHHHHHHHH
Q 006738 125 LN-ELQTVEEMKRQCDEKRN 143 (633)
Q Consensus 125 Lk-eLk~VeemKkqcDekr~ 143 (633)
|+ +=..+++|+++.+.-+.
T Consensus 158 l~~~~g~I~~L~~~I~~~~~ 177 (184)
T PF05791_consen 158 LAGENGDIPQLQKQIENLNE 177 (184)
T ss_dssp HHHTT--HHHHHHHHHHHTG
T ss_pred HhcccCCHHHHHHHHHHHHH
Confidence 55 55666666666665443
No 113
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=79.32 E-value=24 Score=36.48 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=72.0
Q ss_pred HHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHH----HHHHHHHHHHHHHHHHHHHH
Q 006738 70 QELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLL----NELQTVEEMKRQCDEKRNVC 145 (633)
Q Consensus 70 eemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLL----keLk~VeemKkqcDekr~~Y 145 (633)
..+|.||+ ..|.++..+|.++.|.-.++. +|.+.-+..-++.-+ +.-|.|+.-.=.||-+|..+
T Consensus 103 s~lg~aL~---------~~g~a~~kIa~ar~~~D~~I~---~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~ 170 (242)
T cd07600 103 DPLSKALG---------KYSDAEEKIAEARLEQDQLIQ---KEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAEL 170 (242)
T ss_pred CHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666663 566677777777777666554 344444444444333 46677777777899998877
Q ss_pred HHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHh-hhccCCchhHHHHHHHHHHHHHH
Q 006738 146 EYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLK-SLKQGQSRSLLTQAARHHAAQLS 213 (633)
Q Consensus 146 E~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLK-sLKqgq~rsLLtqaaRhhaAQl~ 213 (633)
..-. .-|| ......+ .|+.|.+++.-+|++..+-.-|. .-++-+-...|..|---||.||.
T Consensus 171 ~ka~--~~~k--~~~~~~e---~E~aEdef~~a~E~a~~~M~~il~~~e~i~~L~~fv~AQl~Yh~~~~ 232 (242)
T cd07600 171 KSAE--PAEK--QEAARVE---VETAEDEFVSATEEAVELMKEVLDNPEPLQLLKELVKAQLAYHKTAA 232 (242)
T ss_pred Hhcc--cccc--ccchHHH---HHHHHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 1122 1122222 34677777777777766655544 55565555555555556777775
No 114
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=77.21 E-value=86 Score=32.58 Aligned_cols=13 Identities=0% Similarity=0.008 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 006738 136 RQCDEKRNVCEYM 148 (633)
Q Consensus 136 kqcDekr~~YE~m 148 (633)
++.+++++.|+..
T Consensus 130 ~~~~KaK~~Y~~~ 142 (269)
T cd07673 130 QALQKSKENYNAK 142 (269)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555543
No 115
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=77.10 E-value=38 Score=35.03 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=74.7
Q ss_pred chhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHH
Q 006738 27 PLAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKL 105 (633)
Q Consensus 27 p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL 105 (633)
-+..+++++..... +..++.-.+.+-.++.+++..+-++..+|.++..-. +|.-+...++...|..+.-+..++..+
T Consensus 36 ~l~~l~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s--~tL~~~~~~L~~lL~~~~~~a~~~~~~ 113 (267)
T PF11887_consen 36 TLDDLNTLLATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTS--RTLVDQRQQLDALLLSATGLADTGTDF 113 (267)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888876665 899999999999999999999999999998887633 333446889999999999999999999
Q ss_pred HHHHHHHhhhh
Q 006738 106 VDAYRSHIFQT 116 (633)
Q Consensus 106 ~d~yr~nI~~t 116 (633)
|+.-+.+++.+
T Consensus 114 l~~n~~~L~~~ 124 (267)
T PF11887_consen 114 LADNRDNLIRA 124 (267)
T ss_pred HHHhHHHHHHH
Confidence 99999998876
No 116
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=76.25 E-value=1.5e+02 Score=33.91 Aligned_cols=162 Identities=15% Similarity=0.188 Sum_probs=87.8
Q ss_pred hhhHHHHHHHh-HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHH
Q 006738 28 LAQLDELAQAS-QDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLV 106 (633)
Q Consensus 28 ~a~ldEl~~a~-qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~ 106 (633)
...+++.++.. .++..|++..+.|+.+-..+-.-..+.-+-.++|-..|++. ....|.++-.|-+.=.+|...|
T Consensus 103 i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~-----~~~~G~a~~~Le~~L~~ie~~F 177 (560)
T PF06160_consen 103 IKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAH-----SFSYGPAIEELEKQLENIEEEF 177 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhchhHHHHHHHHHHHHHHH
Confidence 34445555333 33666666666666555444444444444444444444433 3444444444444444444444
Q ss_pred HHHHHHhhh-----------hcc---CCcHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc
Q 006738 107 DAYRSHIFQ-----------TIT---IPSESLLN----ELQTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFS 167 (633)
Q Consensus 107 d~yr~nI~~-----------tIt---~PsESLLk----eLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i 167 (633)
+.|..-+.+ .|. .=++.++. =++.++ ++-.|.++-+.-|+.|.. +|..|.
T Consensus 178 ~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~-----------~gy~l~ 246 (560)
T PF06160_consen 178 SEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEE-----------EGYYLE 246 (560)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------CCCCCC
Confidence 444221111 110 01111111 122333 677889999999999985 345555
Q ss_pred HHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHH
Q 006738 168 LQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAA 205 (633)
Q Consensus 168 ~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaa 205 (633)
--++.+.....++.+.-|.=.|+.|........++.+.
T Consensus 247 ~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~ 284 (560)
T PF06160_consen 247 HLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIE 284 (560)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55677777788888888888888887777776665543
No 117
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=74.92 E-value=57 Score=32.50 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Q 006738 199 SLLTQAARHHAAQLSFVKKALKSL 222 (633)
Q Consensus 199 sLLtqaaRhhaAQl~fF~~GLKsL 222 (633)
.|+...+.+|.-=....+.+|-.+
T Consensus 185 ~~~~~~~~~~~~~~~~L~~~~~~w 208 (219)
T PF08397_consen 185 SVVKSELAFHNEAVEHLQEKLDDW 208 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 455555555544244555555443
No 118
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=74.51 E-value=1.1e+02 Score=31.60 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P 120 (633)
+..++.-|..|+-+.-.+.+....+++.=.+||-.|=+. +..| . -.++-|.+.+++=|.+--.. ...+-+|
T Consensus 11 frsvq~t~~~Llk~i~~yq~~l~~lsq~e~~LG~fl~e~-~~~d-~--t~ag~~m~~t~KaL~~sg~q-----rl~~r~p 81 (204)
T cd07661 11 FRSVQDTCLELLKIIDNYQERLCILSQEENVLGKFLKEQ-GKID-K--TTAGKMMAATGKALSFSSQQ-----RLALRVP 81 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccC-h--hhhccHHHHHHHHHHHhHHH-----HHHHHhh
Confidence 455677899999999999999999999999999988544 2222 2 22244555554444332222 2233344
Q ss_pred cHHHHHHHHHH-----H---HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccH-------HHHHHHHHhhHhhHhHH
Q 006738 121 SESLLNELQTV-----E---EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSL-------QQLQEAHDEYDQEATLF 185 (633)
Q Consensus 121 sESLLkeLk~V-----e---emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~-------eqle~~r~~fqEeaqmc 185 (633)
+--+..|+.+. + ..-++++..|-+|..-+. -.+..-.+.+-..+-.. .|.+..++.|+---.=+
T Consensus 82 l~~f~~~v~Tf~~rai~Dtl~Ti~~~E~aR~EY~a~~~-~mk~~s~eldP~~~~~l~kfr~aQ~qvr~~K~kfdkLk~Dv 160 (204)
T cd07661 82 LLRLYQEVETFRERAIADTLQTIQRMEKCRTEYRAALL-WMKSVSQELDPDTYKQLEKFRKAQAQVRSAKERFDKLKMDV 160 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHH-HHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44444444433 3 356899999999999887 44433333333333333 44445555555111101
Q ss_pred HHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 006738 186 VFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAV 225 (633)
Q Consensus 186 ~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~l 225 (633)
.-.|+=|...+--=|=.|++=||.|=++||.|--.+.++|
T Consensus 161 ~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~~~i 200 (204)
T cd07661 161 CQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTMATI 200 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122222333333677888888888888766555543
No 119
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.23 E-value=98 Score=30.40 Aligned_cols=43 Identities=5% Similarity=-0.004 Sum_probs=21.1
Q ss_pred cHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHH
Q 006738 167 SLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVK 216 (633)
Q Consensus 167 i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~ 216 (633)
+.+.+.++..-||++-+- +||. -..+|-..=|.||..-+.-+.
T Consensus 138 f~~~~~~E~~rF~~~k~~------elk~-~l~~~a~~qi~~y~~~~~~W~ 180 (185)
T cd07628 138 FNKEVLKEYPNFERIKKQ------EIKD-SLGALADGHIDFYQGLVEDWE 180 (185)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777733221 3322 133444444555555444443
No 120
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.60 E-value=38 Score=38.23 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=17.9
Q ss_pred HHhhhhhccchHHHHHHhhhhccccc
Q 006738 217 KALKSLEAVDPHVKMVAEQQHIDYQF 242 (633)
Q Consensus 217 ~GLKsLE~lephVk~lae~~hiDy~f 242 (633)
.+|++.+...|.-.+...+++--+.-
T Consensus 242 ~~l~~~~~~tp~s~~r~~~~n~sv~~ 267 (514)
T KOG3130|consen 242 PCLKDVASSTPFSGQRNSQLNCSVNG 267 (514)
T ss_pred hHhhcCCCcCcchhhhhhcccccccC
Confidence 34788888888887777766544443
No 121
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=71.63 E-value=1.2e+02 Score=31.26 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=26.2
Q ss_pred HHHHHHHhHh----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh
Q 006738 31 LDELAQASQD----MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLL 77 (633)
Q Consensus 31 ldEl~~a~qd----m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll 77 (633)
+++|+.++.- ++-|-.|-++++.+=+..+..+.+.- +-.++|.+|.
T Consensus 22 ~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~-~sk~lG~~L~ 71 (223)
T cd07605 22 LRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQSR-GSQELGEALK 71 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cchHHHHHHH
Confidence 4555544433 45555555555555555555555533 6678888885
No 122
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=71.51 E-value=1.2e+02 Score=30.72 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHH
Q 006738 132 EEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQ 211 (633)
Q Consensus 132 eemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQ 211 (633)
+.++...++.+++|...+. +.++-+.+ + .++|....+.|| +|=+-||. ..+++|.+.+.|..-+
T Consensus 153 eK~~~K~~ka~~~Y~~~v~-~~~~~~~~------~-~~~m~~~~~~~Q---~lEe~Ri~-----~~k~~l~~y~~~~~~~ 216 (261)
T cd07648 153 EKAEAKLKKAQDEYKALVE-KYNNIRAD------F-ETKMTDSCKRFQ---EIEESHLR-----QMKEFLASYAEVLSEN 216 (261)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHH------H-HHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHHHHHHhc
Confidence 3444445555555555553 22211111 1 244444555554 33333443 3456888888888877
Q ss_pred HHHHHH
Q 006738 212 LSFVKK 217 (633)
Q Consensus 212 l~fF~~ 217 (633)
|.-+..
T Consensus 217 ~~~~~~ 222 (261)
T cd07648 217 HSAVGQ 222 (261)
T ss_pred cchHHH
Confidence 775544
No 123
>PLN02413 choline-phosphate cytidylyltransferase
Probab=71.39 E-value=30 Score=37.19 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhccccCCCCccccH----------HHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHH
Q 006738 145 CEYMLMRQREKGRSKNGKGETFSL----------QQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSF 214 (633)
Q Consensus 145 YE~m~~~~~EKgr~k~~K~e~~i~----------eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~f 214 (633)
|+.-+.++.+||.++.-=+-++.. .+|+.-..+.||....+..++..+-----......+-|+-+.=|.+
T Consensus 166 y~~Y~~Rn~~rg~~~~~l~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~ 245 (294)
T PLN02413 166 YNQYVMRNLARGYSRKDLGVSYVKEKRLRVNMGLKKLREKVKEQQEKVGEKIQTVAKTAGMHRNEWVENADRWVAGFLEK 245 (294)
T ss_pred HHHHHHHHHHhcCCHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHH
Confidence 444444456777665444444433 4455555556655444444433211111112233344444445556
Q ss_pred HHHHhhhhh-ccchHH-HHHHhhhhccccccCCCCC
Q 006738 215 VKKALKSLE-AVDPHV-KMVAEQQHIDYQFRGLEDD 248 (633)
Q Consensus 215 F~~GLKsLE-~lephV-k~lae~~hiDy~fSgLedd 248 (633)
|-.|.-..+ ++...| +.|..++..+...++..++
T Consensus 246 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (294)
T PLN02413 246 FEEGCHKMGTAIKDRIQERLMRQQSSGLLELLQNGD 281 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccccCC
Confidence 665544333 233333 4455555555555554433
No 124
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=69.21 E-value=2.2e+02 Score=32.74 Aligned_cols=141 Identities=15% Similarity=0.177 Sum_probs=88.0
Q ss_pred hhHHHHHHHhHh--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHH
Q 006738 29 AQLDELAQASQD--MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLV 106 (633)
Q Consensus 29 a~ldEl~~a~qd--m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~ 106 (633)
..||.++..-|. +++.-|..+-|-+--..-.++.++.-.++=+|-+.| |.- .+-.+.+.+..+-|..-|-.-|.
T Consensus 146 ~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentl-EQE---qEalvN~LwKrmdkLe~ekr~Lq 221 (552)
T KOG2129|consen 146 LPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTL-EQE---QEALVNSLWKRMDKLEQEKRYLQ 221 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHH-HHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665 555444444455545555667777665555555444 221 25678899999999999999999
Q ss_pred HHHHH---------HhhhhccCC-----cHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHH
Q 006738 107 DAYRS---------HIFQTITIP-----SESLLNE-L-QTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQ 170 (633)
Q Consensus 107 d~yr~---------nI~~tIt~P-----sESLLke-L-k~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eq 170 (633)
+.|-+ +|.++--+= .+.+--+ | -.||.++.+|-.+-+.|--+++++++-++. +||+
T Consensus 222 ~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~--------~ree 293 (552)
T KOG2129|consen 222 KKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVD--------HREE 293 (552)
T ss_pred HHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHH
Confidence 98844 333221111 1222222 2 357899999999999999999888776553 5666
Q ss_pred HHHHHHhhHhh
Q 006738 171 LQEAHDEYDQE 181 (633)
Q Consensus 171 le~~r~~fqEe 181 (633)
.+...|..+.|
T Consensus 294 n~rlQrkL~~e 304 (552)
T KOG2129|consen 294 NERLQRKLINE 304 (552)
T ss_pred HHHHHHHHHHH
Confidence 66655555433
No 125
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=68.81 E-value=1.5e+02 Score=30.70 Aligned_cols=188 Identities=15% Similarity=0.229 Sum_probs=124.8
Q ss_pred HHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHH
Q 006738 31 LDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAY 109 (633)
Q Consensus 31 ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~y 109 (633)
|=-+.+|+++ =.+|-++++++++.|.-+++-.--|+|--.+.|+- .+ ..+..++++-+.||..-.-+.|=-+++
T Consensus 6 LY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~e---n~--~~~~~LsrAa~~yG~a~~~mEkEre~l 80 (209)
T cd07607 6 LYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSE---NP--SVNTALSRASLHYGSARNQMEKERENL 80 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccC---CC--CcccHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3345688889 66899999999999999988888888887777753 21 246779999999999877666666666
Q ss_pred HHHhhhhccCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc-cccHHH---HHHHHHhhHhh-H
Q 006738 110 RSHIFQTITIPSESLLN--ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGE-TFSLQQ---LQEAHDEYDQE-A 182 (633)
Q Consensus 110 r~nI~~tIt~PsESLLk--eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e-~~i~eq---le~~r~~fqEe-a 182 (633)
.--+..-+.-||-.++. =|..-.-|++-||.-|+.-|.--+ |=.|++.--.| +-+.|. |+.+---.+|- +
T Consensus 81 ~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~---eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks 157 (209)
T cd07607 81 HRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAA---EVARRRSKDKESGGNPDNAAKLQSAESKLDELKS 157 (209)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 66666777788888887 677777899999999999998655 43333322122 123322 22222222221 1
Q ss_pred hHHHH------HHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 006738 183 TLFVF------RLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVD 226 (633)
Q Consensus 183 qmc~f------rLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~le 226 (633)
.|-+. -+-+...-|-+=-||.++---.|-.+||+..+..|+.|+
T Consensus 158 ~M~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~ 207 (209)
T cd07607 158 SMNTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLH 207 (209)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22111 112333445555667777777788888888777777654
No 126
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=68.79 E-value=1.6e+02 Score=30.97 Aligned_cols=100 Identities=10% Similarity=0.218 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHH---HHHHHHHHHHHhhhhc
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFE---LQKLVDAYRSHIFQTI 117 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~E---L~kL~d~yr~nI~~tI 117 (633)
+.+|.++|. .=+.=+.+|+..|.+++.-.+.. ..+.++.|+.---+-.+--| +..++-.+..+|.+.+
T Consensus 21 ~~dl~~f~k-------ERA~IE~~Yak~L~~Lakk~~~~--~~~~~~~Gtl~~aw~~i~~etE~ia~~H~~la~~L~~e~ 91 (258)
T cd07680 21 CNDLMNCVQ-------ERAKIEKAYGQQLTDWAKRWRQL--IEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNED 91 (258)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhcc--cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 555555554 23455678899999999866532 23345566655555555444 4455566677777776
Q ss_pred cCCc-----HHHHHHHHH-HHHHH-----------------HHHHHHHHHHHHHH
Q 006738 118 TIPS-----ESLLNELQT-VEEMK-----------------RQCDEKRNVCEYML 149 (633)
Q Consensus 118 t~Ps-----ESLLkeLk~-VeemK-----------------kqcDekr~~YE~m~ 149 (633)
.-++ |.+.|++.+ ++|.| ++.+++|+.||..-
T Consensus 92 ~e~~r~~qk~~~~k~~~~~~ke~K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~C 146 (258)
T cd07680 92 LEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLAC 146 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6666 444454432 22222 24567888888654
No 127
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=68.06 E-value=91 Score=34.81 Aligned_cols=76 Identities=24% Similarity=0.279 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHH-----HHHHHHHHHHHHhhhhccCCcHHH
Q 006738 50 SLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQF-----ELQKLVDAYRSHIFQTITIPSESL 124 (633)
Q Consensus 50 sllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~-----EL~kL~d~yr~nI~~tIt~PsESL 124 (633)
+|+.-|+..+..+-.|+..|-.. .-..+++++|..+..|+..=. ||....+++++-||.-..-|++.+
T Consensus 63 sil~fG~~aq~~~~~~s~~mL~~-------vk~~~vgd~g~~l~~l~~~l~~~d~d~l~~~~~~f~~Kif~r~~~siqe~ 135 (386)
T COG3853 63 SLLDFGAEAQEKAAAFSNRMLNE-------VKITDVGDLGKMLEQLMFILKRFDPDELPSDKKGFLTKIFGRSKSSIQEI 135 (386)
T ss_pred HHHHhChHHHHHHHHHHHHHHHH-------hcccccchHHHHHHHHHHHHhhcCCcccccccchHHHHHHhhhhhHHHHH
Confidence 88888888888888888765322 113345566665544443311 222224444444444444444444
Q ss_pred HHHHHHHH
Q 006738 125 LNELQTVE 132 (633)
Q Consensus 125 LkeLk~Ve 132 (633)
+..-|+++
T Consensus 136 ~~kYQt~~ 143 (386)
T COG3853 136 FSKYQTIG 143 (386)
T ss_pred HHHHHHHH
Confidence 44444433
No 128
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=67.94 E-value=1.9e+02 Score=32.88 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=66.8
Q ss_pred hhHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHH---------
Q 006738 29 AQLDELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQ--------- 99 (633)
Q Consensus 29 a~ldEl~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q--------- 99 (633)
..++|+-..-+|+.-||-.|...-+.-.++.++.-+=+.++...+. +-.++.|++|+.-|+-.
T Consensus 152 ~~~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~--------~~~~~s~R~y~e~~k~kL~~~Sd~ll 223 (426)
T smart00806 152 EQRAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSL--------SASGSSNRAYVESSKKKLSEDSDSLL 223 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccCCCcchHHHHHhHHHHHHHHHHHH
Confidence 4568888888889999999988877766666655554444444321 11367999999887765
Q ss_pred ---HHHHHHHHHHHHHhhhhccCCcH----HHHHHHHHHH
Q 006738 100 ---FELQKLVDAYRSHIFQTITIPSE----SLLNELQTVE 132 (633)
Q Consensus 100 ---~EL~kL~d~yr~nI~~tIt~PsE----SLLkeLk~Ve 132 (633)
-+||.++.-+|.-+.+-=..|+. .+.|||..++
T Consensus 224 tkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~ 263 (426)
T smart00806 224 TKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETAR 263 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46888888889888888888864 3333554444
No 129
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=67.62 E-value=2e+02 Score=31.84 Aligned_cols=203 Identities=19% Similarity=0.256 Sum_probs=124.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccC-CchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhc
Q 006738 39 QDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALN-DNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTI 117 (633)
Q Consensus 39 qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~-dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tI 117 (633)
..++.--.-|+.|+.-+-....--|+.++.-.+||.|+- ..+.+ -++--..||-.||.+-+-+.|.= --|
T Consensus 139 eeLE~tae~Ykglveh~~~ml~a~y~lsqt~k~FGd~F~-~i~vhEpQq~AsEAF~~Fgd~HR~ieK~g--------~~~ 209 (429)
T KOG3651|consen 139 EELEETAEFYKGLVEHFGDMLQAQYKLSQTQKEFGDIFC-DIAVHEPQQTASEAFSSFGDKHRMIEKKG--------SES 209 (429)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhccCcchhHHHHHHHHHHHHHHHHHhc--------cch
Confidence 334455566888887777777778999999999999995 43444 56777888988887755444321 122
Q ss_pred cCCcHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhccccC---CCCc------------cccHHHHHH
Q 006738 118 TIPSESLLNELQTVE---------EMKRQCDEKRNVCEYMLMRQREKGRSKN---GKGE------------TFSLQQLQE 173 (633)
Q Consensus 118 t~PsESLLkeLk~Ve---------emKkqcDekr~~YE~m~~~~~EKgr~k~---~K~e------------~~i~eqle~ 173 (633)
..|+.-+|.||++-= -.||-.|-|..-.-|-+. .+|----+. +=+| .+|..=-|.
T Consensus 210 ~k~ikpmlsDL~tYlnkaiPDTrLTikkYlDvKfeYLSYCLK-vKEMDDEE~~f~AlqEPLYRVeTGNYEYRliLRCRQe 288 (429)
T KOG3651|consen 210 AKPIKPMLSDLQTYLNKAIPDTRLTIKKYLDVKFEYLSYCLK-VKEMDDEEVEFVALQEPLYRVETGNYEYRLILRCRQE 288 (429)
T ss_pred hhhhhHHHHHHHHHHhccCCcchhhhHHhhhhhHHHHHHHHh-hhhccchhhceeeecCceeEeecCCeeeehhHHHHHH
Confidence 344555666666531 356666666554333332 223222111 1222 233344456
Q ss_pred HHHhhHhhHhHHHHHHh---hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccc-hHHHHHHhhhhccccccCCCCCC
Q 006738 174 AHDEYDQEATLFVFRLK---SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVD-PHVKMVAEQQHIDYQFRGLEDDD 249 (633)
Q Consensus 174 ~r~~fqEeaqmc~frLK---sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~le-phVk~lae~~hiDy~fSgLedd~ 249 (633)
+|.-|- +|-..-|- =|.|+--+||-+|+++.-..--.+.+.+...|...- =-|+.=-++....|.-|.|-.++
T Consensus 289 aRarF~---kmR~DVleKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L~~~~~fPIEvDl~~t~l~y~ts~l~~eE 365 (429)
T KOG3651|consen 289 ARARFM---KMRDDVLEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEILKERIDFPIEVDLEQTNLNYNTSALGEEE 365 (429)
T ss_pred HHHHHH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEeehhhhccccccccCChhh
Confidence 666664 44333332 578999999999999987776667776554443322 12344456777888888887777
Q ss_pred CCCCC
Q 006738 250 MDDGD 254 (633)
Q Consensus 250 ~d~~e 254 (633)
++|||
T Consensus 366 ~~dde 370 (429)
T KOG3651|consen 366 MGDDE 370 (429)
T ss_pred cCCch
Confidence 77764
No 130
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.39 E-value=1.2e+02 Score=28.62 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhc-ccC-CchhhhHHHHHHHhHH
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKT-ALN-DNEESGKVLLMLGKVQ 99 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kt-a~~-dd~e~g~v~l~lgk~q 99 (633)
|..|.++++.++..-...+..-.+|..++..||.+-.... .+. .-...|.++..++...
T Consensus 20 l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (218)
T cd07596 20 LKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLS 80 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666677777777766543210 111 2344555555544443
No 131
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=66.37 E-value=92 Score=27.36 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhhhccCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHh
Q 006738 102 LQKLVDAYRSHIFQTITIPSESLLNE-LQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQ 180 (633)
Q Consensus 102 L~kL~d~yr~nI~~tIt~PsESLLke-Lk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqE 180 (633)
+..-+..++.++.+.|..+-+.-.++ .+.+++..+.+++.++.|+.......| .-.-+++++....|.+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~y~~ 123 (181)
T PF12729_consen 54 IRSNLQRIRRALRRYLLATDPEERQEIEKEIDEARAEIDEALEEYEKLILSPEE----------KQLLEEFKEAWKAYRK 123 (181)
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH----------HHHHHHHHHHHHHHHH
Confidence 34445566677777777777776664 455778888888888888775421111 1134677777777763
Q ss_pred hHhHHHHHHhhhccCCchhHHHHHHHHHHHHH-HHHHHHhhhhhccchHHHHHHhhh
Q 006738 181 EATLFVFRLKSLKQGQSRSLLTQAARHHAAQL-SFVKKALKSLEAVDPHVKMVAEQQ 236 (633)
Q Consensus 181 eaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl-~fF~~GLKsLE~lephVk~lae~~ 236 (633)
... =-+.-++.|... .|...+..++ ..|.+-.+.+..+--+....|++.
T Consensus 124 ~~~---~~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~a~~~ 173 (181)
T PF12729_consen 124 LRD---QVIELAKSGDND----EARAILNGEARPAFDELRDALDELIEYNNQQAEQA 173 (181)
T ss_pred HHH---HHHHHHHCCCHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 223344455443 2333333333 566666666777666666666654
No 132
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=64.99 E-value=1.2e+02 Score=30.20 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=16.7
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhccC
Q 006738 94 MLGKVQFELQKLVDAYRSHIFQTITI 119 (633)
Q Consensus 94 ~lgk~q~EL~kL~d~yr~nI~~tIt~ 119 (633)
.|.++-.|+..+++.|..-.-..|.|
T Consensus 85 LL~rvrde~~~~l~~y~~l~~s~~~f 110 (189)
T PF10211_consen 85 LLLRVRDEYRMTLDAYQTLYESSIAF 110 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888876555555554
No 133
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=64.42 E-value=1.7e+02 Score=29.78 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006738 130 TVEEMKRQCDEKRNVCEYML 149 (633)
Q Consensus 130 ~VeemKkqcDekr~~YE~m~ 149 (633)
.++.-|+.||...++||.-+
T Consensus 126 ~leKAK~~Y~~~c~e~Ekar 145 (234)
T cd07652 126 AAEKAKARYDSLADDLERVK 145 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34566788888888888644
No 134
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=64.20 E-value=1.3e+02 Score=30.80 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=74.0
Q ss_pred HhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHH-HHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 72 LGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVD-AYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 72 mGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d-~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~ 150 (633)
+|.||+ ..|.+...+|.+|.++..-+. +|...|-+.+. =+-.+.++.|.++--.=.||-+|--|..-
T Consensus 73 ~G~aL~---------~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKkLe~rRLdyD~~ksk~~ka-- 140 (215)
T cd07593 73 YGSCLS---------KLGRAHCKIGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKKLESRRLAYDAALTKSQKA-- 140 (215)
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 677775 488999999998876544333 55555554442 34455667788887777888888666542
Q ss_pred HHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhh--ccCCchhHHHHHHHHHHHHHH
Q 006738 151 RQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSL--KQGQSRSLLTQAARHHAAQLS 213 (633)
Q Consensus 151 ~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsL--Kqgq~rsLLtqaaRhhaAQl~ 213 (633)
++++.+ -.-..++-+..+++=.|++..+-+-+++- .+-+-..-|-+|---||.||.
T Consensus 141 -k~~~~~------~eeElr~Ae~kfees~E~a~~~M~~i~~~e~e~~~~L~~lv~AQl~Yh~q~~ 198 (215)
T cd07593 141 -KKEDSR------LEEELRRAKAKYEESSEDVEARMVAIKESEADQYRDLTDLLDAELDYHQQSL 198 (215)
T ss_pred -cccchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 11235566667777777777777777753 443333334445445666664
No 135
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=63.49 E-value=2e+02 Score=30.22 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=30.2
Q ss_pred HHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhc
Q 006738 35 AQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKT 80 (633)
Q Consensus 35 ~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kt 80 (633)
.+..-+ |++|++.|.-- +.-.-||+..|++|..-++.|.
T Consensus 14 ~~~~i~lLedi~~F~reR-------a~IE~EYa~~L~kLakky~~Kk 53 (264)
T cd07654 14 HQTECDLLEDIRTYSQKK-------AAIEREYGQALQKLASQFLKRE 53 (264)
T ss_pred HHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccc
Confidence 344455 89999988764 4456788999999999998774
No 136
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=63.07 E-value=1.8e+02 Score=30.01 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006738 130 TVEEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 130 ~VeemKkqcDekr~~YE~m~~ 150 (633)
+|.++++.+++.++.||.+-.
T Consensus 167 ev~~~e~~~~~a~~~fe~Is~ 187 (234)
T cd07664 167 EIKEWEAKVQQGERDFEQISK 187 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555677777777777777653
No 137
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=60.90 E-value=90 Score=33.96 Aligned_cols=46 Identities=39% Similarity=0.487 Sum_probs=38.5
Q ss_pred HHHHHHHhhhhhhhcccCCchhhhHHHHHHHhH---HHHHHHHHHHHHHHhhhh
Q 006738 66 SESLQELGACLLEKTALNDNEESGKVLLMLGKV---QFELQKLVDAYRSHIFQT 116 (633)
Q Consensus 66 sEaleemGscll~kta~~dd~e~g~v~l~lgk~---q~EL~kL~d~yr~nI~~t 116 (633)
..++.++..||||. |+|+-++.+...+- ..||..||..|-.+=.++
T Consensus 30 ~~s~~~~t~~Lle~-----~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a 78 (336)
T PF05055_consen 30 FDSLKEVTECLLEM-----NQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEA 78 (336)
T ss_pred hHHHHHHHHHHhCC-----ChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHH
Confidence 78999999999876 78999999987643 789999999997766655
No 138
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=60.29 E-value=33 Score=37.12 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=59.5
Q ss_pred hhHHHHHHHhHh-HHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHH
Q 006738 29 AQLDELAQASQD-MQDMRGCYDSLLSAA-AATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLV 106 (633)
Q Consensus 29 a~ldEl~~a~qd-m~~Mk~~ydsllsaa-aa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~ 106 (633)
..-.||.....+ +..++..|=-.+.-. ..++.=..+|.++|.+|+.|+- . ..|-++|=+...++...|.++.
T Consensus 101 ~S~aelw~~Is~~I~~Ik~dYldvYa~lvk~YTd~yQ~fn~~lSkls~~Is-a-----G~DGn~VkFd~~~lk~~l~~~~ 174 (308)
T TIGR02553 101 IQDDPIWDMLSDVIGKIGDSYLGVYENVVEGYTDFYQAFSDILSKMQDWIS-P-----GKDGNNVKLDVGKLKALLQQLI 174 (308)
T ss_pred CcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-c-----CCCCCeeeeCHHHHHHHHHHHH
Confidence 344788888777 888999887776544 3467777789999999988773 1 1244577788888999999999
Q ss_pred HHHHHHh
Q 006738 107 DAYRSHI 113 (633)
Q Consensus 107 d~yr~nI 113 (633)
+.|-..-
T Consensus 175 ~Ky~~~~ 181 (308)
T TIGR02553 175 DHLPNQI 181 (308)
T ss_pred HHhccCc
Confidence 9997543
No 139
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=59.59 E-value=2.2e+02 Score=29.53 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHH
Q 006738 64 EFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAY 109 (633)
Q Consensus 64 efsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~y 109 (633)
..+.+|..||..-. +..-.-+...-.-++.||..=.|--+++.+-
T Consensus 77 ~Ls~als~laev~~-~i~~~~~~qa~qd~~~f~e~l~eYiRli~SV 121 (234)
T cd07665 77 ALSRALSQLAEVEE-KIEQLHQEQANNDFFLLAELLADYIRLLSAV 121 (234)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 36777777775542 2111113445555677777755555555443
No 140
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=59.10 E-value=3e+02 Score=31.42 Aligned_cols=73 Identities=21% Similarity=0.343 Sum_probs=35.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccC-CchhhhHHHHHHHhHHHHHHHHHHHHHHHhh
Q 006738 39 QDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALN-DNEESGKVLLMLGKVQFELQKLVDAYRSHIF 114 (633)
Q Consensus 39 qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~-dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~ 114 (633)
+.+..+.+.|+.+..........--+..+.++++..-+= .+. +..++-..+-.|-+...|...-++.|+..|.
T Consensus 355 keL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~le---eie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 355 KQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLE---EIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336666666665555444433333333334444444331 122 3344445555555555555555666555444
No 141
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.35 E-value=2.3e+02 Score=33.83 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=51.6
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHH-----HHhhhhccCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 006738 88 SGKVLLMLGKVQFELQKLVDAYR-----SHIFQTITIPSESLLNELQTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKNG 161 (633)
Q Consensus 88 ~g~v~l~lgk~q~EL~kL~d~yr-----~nI~~tIt~PsESLLkeLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~~ 161 (633)
-.+.+-.++.++.||..|.-.+- -.|..-|.-|+--.|.-|..+- +|-+|+|++++.+--|+. |+||=--..|
T Consensus 63 ~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~-qie~l~~~l~ 141 (660)
T KOG4302|consen 63 KARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYH-QIEKLCEELG 141 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 34556677888888877766551 1123335556666777665554 999999999999999988 8888655544
Q ss_pred CC
Q 006738 162 KG 163 (633)
Q Consensus 162 K~ 163 (633)
=.
T Consensus 142 g~ 143 (660)
T KOG4302|consen 142 GP 143 (660)
T ss_pred CC
Confidence 44
No 142
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=58.01 E-value=1.1e+02 Score=37.70 Aligned_cols=122 Identities=20% Similarity=0.244 Sum_probs=76.4
Q ss_pred HHHHHHHhHhH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchh----hhHHHHHHHhHHHHHHHH
Q 006738 31 LDELAQASQDM-QDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEE----SGKVLLMLGKVQFELQKL 105 (633)
Q Consensus 31 ldEl~~a~qdm-~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e----~g~v~l~lgk~q~EL~kL 105 (633)
++++.+...-| +...+|+|..++.|--.+.. -+|..|++-+-.|| .++-.+++.+ .|+|++.-|..|.=...|
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~-~qy~~AIqmYe~~l-kkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQ-GQYRLAIQMYENCL-KKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHH-HHHHHHHHHHHHHH-HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444443332 23335778888888666654 47999999999998 4555455544 367777777766666666
Q ss_pred HHHH---------HHHhhhhccCCcHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Q 006738 106 VDAY---------RSHIFQTITIPSESLLN-ELQTVE---EMKRQCDEKRNVCEYMLMRQREK 155 (633)
Q Consensus 106 ~d~y---------r~nI~~tIt~PsESLLk-eLk~Ve---emKkqcDekr~~YE~m~~~~~EK 155 (633)
+.-. ++||---+.-=.+++|. +=+++| +.-++-++.++.+.++.. ..+|
T Consensus 740 l~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~-~~d~ 801 (1018)
T KOG2002|consen 740 LKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSK-NGDK 801 (1018)
T ss_pred HHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 5544 44444444445567776 445555 445667778888888875 4444
No 143
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=58.00 E-value=1.3e+02 Score=27.94 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006738 130 TVEEMKRQCDEKRNVCEYMLMRQREK 155 (633)
Q Consensus 130 ~VeemKkqcDekr~~YE~m~~~~~EK 155 (633)
.|++.-++|-++|+.|+-..+ ++||
T Consensus 125 d~~~Fl~~f~~~R~~yH~R~~-K~Ek 149 (150)
T PF07200_consen 125 DVDDFLKQFKEKRKLYHLRRA-KEEK 149 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HH
T ss_pred CHHHHHHHHHHHHHHHHHHHh-hhcc
Confidence 578999999999999988765 7776
No 144
>PF15047 DUF4533: Protein of unknown function (DUF4533)
Probab=57.48 E-value=1.1e+02 Score=32.09 Aligned_cols=116 Identities=22% Similarity=0.241 Sum_probs=68.5
Q ss_pred HHHHHHHhHhHHHHHHHH------HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccC-CchhhhHHHHHHHhHHHHHH
Q 006738 31 LDELAQASQDMQDMRGCY------DSLLSAAAATANSAYEFSESLQELGACLLEKTALN-DNEESGKVLLMLGKVQFELQ 103 (633)
Q Consensus 31 ldEl~~a~qdm~~Mk~~y------dsllsaaaa~~ns~yefsEaleemGscll~kta~~-dd~e~g~v~l~lgk~q~EL~ 103 (633)
.|.++++.++||.+=... +.|++=.+..+-++|+=...+.|+-..--+- .-| --+.+|.|+- =|.+
T Consensus 53 ~eqmi~~~kemQ~~vd~kd~~mq~e~l~ski~t~~~s~~eK~~~ikE~~~~ak~i-~~~v~tpvi~~~l~-s~ni----- 125 (225)
T PF15047_consen 53 FEQMIKIFKEMQSVVDAKDKEMQKEPLCSKIATAMPSVYEKLTDIKELEQSAKEI-FKNVQTPVIGSALS-SSNI----- 125 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHhhhhHHHHhcccchhhhhHHHH-HHhcccceeehhhc-cccH-----
Confidence 355556666655442222 1455556666777787777666543322111 001 1234444432 2333
Q ss_pred HHHHHHHHHhhhhccCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc
Q 006738 104 KLVDAYRSHIFQTITIPSESLL-NELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETF 166 (633)
Q Consensus 104 kL~d~yr~nI~~tIt~PsESLL-keLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~ 166 (633)
+.++-+++...+.+|+=+|+ .|+ .-||.|.|-|- .-.||+++=.-=.-|+
T Consensus 126 --l~~LeSsls~lm~~pim~L~lsd~-y~~dtk~q~d~----------tTs~~s~s~~~~~~t~ 176 (225)
T PF15047_consen 126 --LKLLESSLSLLMKFPIMNLRLSDF-YREDTKEQSDA----------TTSEKSISPGPSKTTT 176 (225)
T ss_pred --HHHHHHHHHHHHhCcchheehhhh-hhhhhhccccc----------ccccCCCCCCCccccH
Confidence 88999999999999999987 488 66788888775 2457777654444443
No 145
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.97 E-value=4.1e+02 Score=31.80 Aligned_cols=101 Identities=21% Similarity=0.198 Sum_probs=62.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhhccCCcH--H-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccccCCCCc
Q 006738 92 LLMLGKVQFELQKLVDAYRSHIFQTITIPSE--S-LLNELQTVE----EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGE 164 (633)
Q Consensus 92 ~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsE--S-LLkeLk~Ve----emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e 164 (633)
|-..-.-|..|.+=+++.++.+....-..++ - +.+||+.++ .|+...++-++-.++-. .+++++++..-|..
T Consensus 602 ~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~-~~i~~~~~~~~~s~ 680 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQ-RQIESQKSPKKKSI 680 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccccccCCCc
Confidence 3344456888888788877777554333333 2 333777665 45555555544444322 26677777666777
Q ss_pred cccHHHHHHHHHhhHhhHhHHHHHHhhhc
Q 006738 165 TFSLQQLQEAHDEYDQEATLFVFRLKSLK 193 (633)
Q Consensus 165 ~~i~eqle~~r~~fqEeaqmc~frLKsLK 193 (633)
.+...|++.-+.--.++.+.-.=.+|.||
T Consensus 681 ~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik 709 (717)
T PF10168_consen 681 VLSESQKRTIKEILKQQGEEIDELVKQIK 709 (717)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777777666555555444
No 146
>PRK10869 recombination and repair protein; Provisional
Probab=56.92 E-value=3.5e+02 Score=31.01 Aligned_cols=129 Identities=19% Similarity=0.162 Sum_probs=61.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHH-HHHHH-----HHHHHH-HHHHHHHHHHhhccccCCCC
Q 006738 91 VLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVE-EMKRQ-----CDEKRN-VCEYMLMRQREKGRSKNGKG 163 (633)
Q Consensus 91 v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~Ve-emKkq-----cDekr~-~YE~m~~~~~EKgr~k~~K~ 163 (633)
++-.|+.+..+|.++- .|-..+ .-+..-++++.-+|+.+- ++... ||..|- ..|..+. .+.+=++|.|
T Consensus 242 ~~~~l~~~~~~l~~~~-~~d~~~-~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~-~l~~L~rKyg-- 316 (553)
T PRK10869 242 ILSQLYSAKQLLSELI-GMDSKL-SGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLS-KQISLARKHH-- 316 (553)
T ss_pred HHHHHHHHHHHHHHHh-hhCHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH-HHHHHHHHhC--
Confidence 6667777777776662 221111 111122333333444444 44332 333332 2344443 5556666665
Q ss_pred ccccHHHHHHHHHhhHhhHhHH---HHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHH
Q 006738 164 ETFSLQQLQEAHDEYDQEATLF---VFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVK 230 (633)
Q Consensus 164 e~~i~eqle~~r~~fqEeaqmc---~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk 230 (633)
.+-+++-+.+++.++|++.. +..+.+|++. ..-+.......+.+++=.|+ ++.+.|+-.|.
T Consensus 317 --~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e--~~~l~~~l~~~A~~LS~~R~--~aA~~l~~~v~ 380 (553)
T PRK10869 317 --VSPEELPQHHQQLLEEQQQLDDQEDDLETLALA--VEKHHQQALETAQKLHQSRQ--RYAKELAQLIT 380 (553)
T ss_pred --CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 35566666666666555443 3345555432 22333444555566666655 34444444443
No 147
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=55.00 E-value=2e+02 Score=30.72 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=31.9
Q ss_pred cCCchhhhHHHHHHHh----HHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHH
Q 006738 82 LNDNEESGKVLLMLGK----VQFELQKLVDAYRSHIFQTITIPSESLLNELQTV 131 (633)
Q Consensus 82 ~~dd~e~g~v~l~lgk----~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~V 131 (633)
.++|++..+.+...|. |+.||.| ||.|..-|..+|.- =+.||++|+..
T Consensus 222 ~~~DDI~~~ll~~~~~~e~lF~~eL~k-f~~~~~~v~~~~~~-Q~~ll~~i~~~ 273 (339)
T cd09238 222 KRNDNILAKVMATTGSYDALFKEELKK-YDSVREAVSKNISS-QDDLLSRLRAL 273 (339)
T ss_pred hhcCCcHHHHHHhhhhhHHHHHHHHHH-HhhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3456777777766655 6669987 99998888887544 34555555443
No 148
>PF06511 IpaD: Invasion plasmid antigen IpaD; InterPro: IPR009483 This family consists of several invasion plasmid antigen IpaD proteins. Entry of Shigella flexneri into epithelial cells and lysis of the phagosome involve the IpaB, IpaC, and IpaD proteins, which are secreted by type III secretion machinery, and appear to form a multi-protein complex capable of inducing the phagocytic event which internalizes the bacterium [].; GO: 0009405 pathogenesis; PDB: 3R9V_B 2JAA_B 2J0O_A 2J0N_B 2P7N_A 2YM9_A 3NZZ_A 3O02_A 3O00_A 2YM0_B ....
Probab=54.48 E-value=14 Score=40.16 Aligned_cols=89 Identities=18% Similarity=0.308 Sum_probs=66.1
Q ss_pred hhHHHHHHHhHh-HHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHH
Q 006738 29 AQLDELAQASQD-MQDMRGCYDSLLSAAA-ATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLV 106 (633)
Q Consensus 29 a~ldEl~~a~qd-m~~Mk~~ydsllsaaa-a~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~ 106 (633)
..-.|+.+..-+ |..|++.|=-.++-.. .++.=-.+|++.|.+|+.+.- + . .|-+.|-+..++++..|..|.
T Consensus 128 ~S~~elw~~I~~~I~sIk~dYld~Ya~vv~kYTdyyq~fneilskms~~I~---a-G--~DGn~VkfD~~~lk~al~~l~ 201 (337)
T PF06511_consen 128 ISYAELWAKIADLIKSIKDDYLDVYADVVKKYTDYYQDFNEILSKMSDWIK---A-G--KDGNNVKFDAGALKNALEELK 201 (337)
T ss_dssp EEHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHGGGEE---E-C--SSCTEEEEEHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---c-C--CCCCeeeecHHHHHHHHHHHH
Confidence 334677766666 8999888776665444 467777789999999977763 1 1 244567788999999999999
Q ss_pred HHHHHHhhhhccCCcHH
Q 006738 107 DAYRSHIFQTITIPSES 123 (633)
Q Consensus 107 d~yr~nI~~tIt~PsES 123 (633)
+.|-+.=-+.|.||...
T Consensus 202 ~kY~~~n~~~vlfP~~~ 218 (337)
T PF06511_consen 202 DKYSSDNEDSVLFPAQT 218 (337)
T ss_dssp HHHTS-STTTEEESSSS
T ss_pred HHhcccCCcceecCCCC
Confidence 99997777788888875
No 149
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=54.16 E-value=3.9e+02 Score=30.62 Aligned_cols=161 Identities=13% Similarity=0.215 Sum_probs=85.1
Q ss_pred chhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHH
Q 006738 27 PLAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKL 105 (633)
Q Consensus 27 p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL 105 (633)
-...++++++.... +..|++..+-|+.+-..+-.-..+--+-.++|--.||++ ...-|.++-.|-+.=.+|...
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~-----~~~~G~a~~~le~~l~~~e~~ 180 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLAN-----RFSFGPALDELEKQLENLEEE 180 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CccccchHHHHHHHHHHHHHH
Confidence 34455555544333 666666666666665444444444444444554445433 344555555554444444444
Q ss_pred HHHHHH-----------Hhhhhcc---CCcHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc
Q 006738 106 VDAYRS-----------HIFQTIT---IPSESLLNEL----QTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETF 166 (633)
Q Consensus 106 ~d~yr~-----------nI~~tIt---~PsESLLkeL----k~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~ 166 (633)
|+.|.. .|...|- .=++.++.++ +.++ ++-.|+++=+.-|..|.. +|..|
T Consensus 181 f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~-----------~gy~~ 249 (569)
T PRK04778 181 FSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVE-----------EGYHL 249 (569)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------cCCCC
Confidence 444411 1111111 1122222222 1222 455688899999999985 45555
Q ss_pred cHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHH
Q 006738 167 SLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQ 203 (633)
Q Consensus 167 i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtq 203 (633)
..-.++......++.+.-|.=.|+.|+-......+..
T Consensus 250 ~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~ 286 (569)
T PRK04778 250 DHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEE 286 (569)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5555666667777777777777776666655554443
No 150
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.83 E-value=80 Score=35.31 Aligned_cols=117 Identities=24% Similarity=0.209 Sum_probs=56.4
Q ss_pred hhHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHH
Q 006738 29 AQLDELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDA 108 (633)
Q Consensus 29 a~ldEl~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~ 108 (633)
..|++|+.+.|.-..|.+.=++.-+.+.|+.-+...|=+.=.+ .+-+|+..||+-+||-++=+.
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e----------------~~eal~~YGkslLela~~e~~ 102 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLE----------------TFEALFLYGKSLLELAKEESQ 102 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHH----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888875555555555555555555555555333222 333444444554454444444
Q ss_pred HHHHhhhhccCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcc
Q 006738 109 YRSHIFQTITIPSESLLN--ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGET 165 (633)
Q Consensus 109 yr~nI~~tIt~PsESLLk--eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~ 165 (633)
..-|-..+-.+==+..-| |+-.++ -+-.+.++.|.+-++ -.+|++-..-|.+.
T Consensus 103 VL~nale~~~~eE~e~~~s~e~s~e~---nn~~e~vee~r~~~a-~~~kekeEae~~ed 157 (400)
T KOG4563|consen 103 VLGNALETESAEEEEVEKSGELSDEE---NNNKETVEEYRYGLA-LLEKEKEEAEKTED 157 (400)
T ss_pred hhccccccccccchhhccccccchhh---hccHHHHHHHHhhhh-hhhhhhhhcccccC
Confidence 433333333333333333 333332 111345666666554 44554444433333
No 151
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=52.38 E-value=1.3e+02 Score=24.86 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=27.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhh
Q 006738 39 QDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEK 79 (633)
Q Consensus 39 qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~k 79 (633)
.++..|++..+.+-.+.. .++..+|.++-.+|-.+++.-
T Consensus 24 ~~~~~l~~~~~~~~~~~~--~~d~~~~~~~~~~fh~~l~~~ 62 (125)
T PF07729_consen 24 EDIAELEELLEQMEEAIE--DEDIEEFIEADIEFHRALAEA 62 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHHHHHHH
Confidence 347777777777766653 566777888888888888743
No 152
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.00 E-value=73 Score=31.09 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=41.1
Q ss_pred HHHHHHhhhhhhhcccCCchhhhHHHHHHH--------hHHHHHHHH---HHHHHHHhhhhccCCcHHHHHHHHHHHHHH
Q 006738 67 ESLQELGACLLEKTALNDNEESGKVLLMLG--------KVQFELQKL---VDAYRSHIFQTITIPSESLLNELQTVEEMK 135 (633)
Q Consensus 67 EaleemGscll~kta~~dd~e~g~v~l~lg--------k~q~EL~kL---~d~yr~nI~~tIt~PsESLLkeLk~VeemK 135 (633)
++|+--|..||-- -.+|-+++.|+ ++|.||.++ +|+|++.|..-... +-|=+|
T Consensus 6 ~~W~~a~igLvvG------i~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~----------sAeLlk 69 (138)
T COG3105 6 MTWEYALIGLVVG------IIIGALIARLTNRKLKQQQKLQYELEKVKAQLDEYRQELVKHFAR----------SAELLK 69 (138)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 4555556666622 34677777665 688998876 78888876544221 223334
Q ss_pred HHHHHHHHHHHHHH
Q 006738 136 RQCDEKRNVCEYML 149 (633)
Q Consensus 136 kqcDekr~~YE~m~ 149 (633)
.-----+++|+||-
T Consensus 70 tl~~dYqklyqHmA 83 (138)
T COG3105 70 TLAQDYQKLYQHMA 83 (138)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445678888885
No 153
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.43 E-value=1.4e+02 Score=36.07 Aligned_cols=125 Identities=17% Similarity=0.112 Sum_probs=74.7
Q ss_pred HHhh-hHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhh-hccCCcHHHHHHHHHHHHH
Q 006738 57 ATAN-SAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQ-TITIPSESLLNELQTVEEM 134 (633)
Q Consensus 57 a~~n-s~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~-tIt~PsESLLkeLk~Veem 134 (633)
.|++ +..||..|=+|.-.... =.++--++|+-||..|||=-||--. |++. .|.||.+-...=++-.-..
T Consensus 479 kt~~~~~~E~~aA~~K~~~~~~------Ik~~~~~aLlrl~~~q~e~akl~~~---~aL~~~i~f~~~~~~~v~~~~~s~ 549 (748)
T KOG4151|consen 479 KTVSWAKNEYLAAKEKYERAKK------IKPGGYEALLRLGQQQFEEAKLKWY---HALAGKIDFPGERSYEVVKPLDSA 549 (748)
T ss_pred HHHHHHHHHHHhhhhHHhcCcc------ccccHHHHHHHHHHHhchHHHHHHH---HHHhhhcCCCCCchhhhhhhhcch
Confidence 3444 66666664444333222 1467789999999999996666544 4444 9999988765433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCc-----------cccH---HHHHHHHHhhHhhHhHHHHHHh
Q 006738 135 KRQCDEKRNVCEYMLMRQREKGRSKNGKGE-----------TFSL---QQLQEAHDEYDQEATLFVFRLK 190 (633)
Q Consensus 135 KkqcDekr~~YE~m~~~~~EKgr~k~~K~e-----------~~i~---eqle~~r~~fqEeaqmc~frLK 190 (633)
-.+-.+.=+.||.+.+..-..+=++..|++ .++. .-+|++.-+-+--+-||.+.+.
T Consensus 550 ~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e 619 (748)
T KOG4151|consen 550 LHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYE 619 (748)
T ss_pred hhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHH
Confidence 333346666788888744244444444443 1111 3356666666666777777776
No 154
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=51.32 E-value=1.9e+02 Score=26.28 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 006738 41 MQDMRGCYDSL 51 (633)
Q Consensus 41 m~~Mk~~ydsl 51 (633)
+..+++.++..
T Consensus 69 ~~~~~~~l~~~ 79 (202)
T PF01442_consen 69 IEELKNSLDSS 79 (202)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 155
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.11 E-value=47 Score=38.01 Aligned_cols=162 Identities=22% Similarity=0.233 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHH
Q 006738 60 NSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCD 139 (633)
Q Consensus 60 ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcD 139 (633)
=..++|.+||. |||+- | --|.-|-.+|..+||||.--=+.|+.- ==.||.+.-.-|-.+-.+
T Consensus 174 m~re~y~eAl~----~LleA-----D-------e~F~~Cd~klLe~VDNyallnLDIVWC--YfrLknitcL~DAe~RL~ 235 (568)
T KOG2561|consen 174 MEREMYSEALL----VLLEA-----D-------ESFSLCDSKLLELVDNYALLNLDIVWC--YFRLKNITCLPDAEVRLV 235 (568)
T ss_pred HHHHHHHHHHH----HHHHh-----h-------HHHHhhhHHHHHhhcchhhhhcchhhe--ehhhcccccCChHHHHHH
Confidence 34567777775 56532 1 147788899999999996432233211 112333333334444444
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCch--------hHHHHHHHHHHHH
Q 006738 140 EKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSR--------SLLTQAARHHAAQ 211 (633)
Q Consensus 140 ekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~r--------sLLtqaaRhhaAQ 211 (633)
..|+-|+.-.. +.|+ ||-+||-|++. .|||..+-||.-|
T Consensus 236 ra~kgf~~syG-------------------------enl~--------Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~ 282 (568)
T KOG2561|consen 236 RARKGFERSYG-------------------------ENLS--------RLRSLKGGQSPERALILRLELLQGVVAYHQGQ 282 (568)
T ss_pred HHHHhhhhhhh-------------------------hhhH--------hhhhccCCCChhHHHHHHHHHHHHHHHHHcCC
Confidence 44444433221 1223 66677777765 4889988888877
Q ss_pred HHHHHHHhhhhhccchHHHHHHhhhhccccccCCCCCCCCCCCCCCCC-CCCCCCcccccccccccccc
Q 006738 212 LSFVKKALKSLEAVDPHVKMVAEQQHIDYQFRGLEDDDMDDGDDDDNG-SDSRGDGELSFDYRQNEQEQ 279 (633)
Q Consensus 212 l~fF~~GLKsLE~lephVk~lae~~hiDy~fSgLedd~~d~~ed~~d~-~d~~ddgeLSFDY~~n~~~~ 279 (633)
.+ +++|.|+.|+..+-+-+-+|-.+|=|=+=|++..| ---. ..|+.+-+-+.+|-++.+++
T Consensus 283 ~d------eAye~le~a~~~l~elki~d~~lsllv~mGfeesd-aRlaLRsc~g~Vd~AvqfI~erre~ 344 (568)
T KOG2561|consen 283 RD------EAYEALESAHAKLLELKINDETLSLLVGMGFEESD-ARLALRSCNGDVDSAVQFIIERREK 344 (568)
T ss_pred cH------HHHHHHHHHHHHHHHeeccchHHHHHHHcCCCchH-HHHHHHhccccHHHHHHHHHHHHHH
Confidence 64 78899999999999999999999855433333111 0000 12555555667777776544
No 156
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=49.86 E-value=1.7e+02 Score=30.99 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=30.0
Q ss_pred CcchhhhhhhcccccCCCCcccccccchhhHHHHHHHhHh-HHHHHHHHHHHHHHHH
Q 006738 1 MKTSLRRWRGFTLHKHGDSKDRRDLRPLAQLDELAQASQD-MQDMRGCYDSLLSAAA 56 (633)
Q Consensus 1 MKS~lrklRgfa~h~~~~~ker~~~~p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaa 56 (633)
|+.-|+-+|.||.-.. |..=+--=..-++++.+..++ +..|+++|..|.....
T Consensus 120 m~~q~~~vK~~aRl~a---K~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~ 173 (325)
T PF08317_consen 120 MDNQFQLVKTYARLEA---KKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLE 173 (325)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666663211 111010124556777777766 8888888877765443
No 157
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=49.16 E-value=3.2e+02 Score=28.14 Aligned_cols=64 Identities=9% Similarity=-0.065 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH
Q 006738 59 ANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN 126 (633)
Q Consensus 59 ~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk 126 (633)
+.=+++|+..|.+++.-.. . ....+-...+|..+-....-+..+.-.+.+.|.+.| -+++.+++
T Consensus 32 a~IEe~Yak~L~klak~~~-~--~~e~Gtl~~~w~~~~~~~E~~a~~H~~l~~~L~~~~-~~i~~~~~ 95 (261)
T cd07674 32 AAIEETYSKSMSKLSKMAS-N--GSPLGTFAPMWEVFRVSSDKLALCHLELMRKLNDLI-KDINRYGD 95 (261)
T ss_pred HHHHHHHHHHHHHHHhccc-C--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3345778888888873221 1 111223334444444444444455555555555332 34444443
No 158
>PRK10869 recombination and repair protein; Provisional
Probab=48.11 E-value=4.8e+02 Score=29.95 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=13.6
Q ss_pred CchhhhHHHHHHHhHHHHHH
Q 006738 84 DNEESGKVLLMLGKVQFELQ 103 (633)
Q Consensus 84 dd~e~g~v~l~lgk~q~EL~ 103 (633)
+++++-.-+-.|.++++=+.
T Consensus 206 E~eeL~~e~~~L~n~e~i~~ 225 (553)
T PRK10869 206 EFEQIDEEYKRLANSGQLLT 225 (553)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888754333
No 159
>PF06213 CobT: Cobalamin biosynthesis protein CobT; InterPro: IPR006538 These proteins are CobT subunits of the aerobic cobalt chelatase (aerobic cobalamin biosynthesis pathway). Pseudomonas denitrificans CobT has been experimentally characterised [, ]. Aerobic cobalt chelatase consists of three subunits, CobT, CobN (IPR003672 from INTERPRO) and CobS (IPR006537 from INTERPRO). Cobalamin (vitamin B12) can be complexed with metal via the ATP-dependent reactions (aerobic pathway) (e.g., in P. denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. However, aerobic cobalt chelatase subunits CobN and CobS are homologous to Mg-chelatase subunits BchH and BchI, respectively []. CobT, too, has been found to be remotely related to the third subunit of Mg-chelatase, BchD (involved in bacteriochlorophyll synthesis, e.g., in Rhodobacter capsulatus) []. Nomenclature note: CobT of the aerobic pathway P. denitrificans is not a homologue of CobT of the anaerobic pathway (Salmonella typhimurium, Escherichia coli). Therefore, annotation of any members of this family as nicotinate-mononucleotide--5,6-dimethylbenzimidazole phosphoribosyltransferases is erroneous.
Probab=48.10 E-value=1.3e+02 Score=31.22 Aligned_cols=118 Identities=18% Similarity=0.251 Sum_probs=58.6
Q ss_pred hhhhhhhcc-----cccCCCCcccccccchhhHHH-HHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-hhhh
Q 006738 4 SLRRWRGFT-----LHKHGDSKDRRDLRPLAQLDE-LAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQEL-GACL 76 (633)
Q Consensus 4 ~lrklRgfa-----~h~~~~~ker~~~~p~a~ldE-l~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleem-Gscl 76 (633)
-+..+|||+ +-++|+.+--+...|...+.. |.++. ++.| |+++.+-. +.+.+.++...|+.+ ..+.
T Consensus 58 ~~~~~RG~aD~~Al~lr~~D~~lh~~~~p~~~~ar~lfn~l---Eq~R--vE~~g~~~--~~Gv~~NL~~~~~~~~~~~~ 130 (282)
T PF06213_consen 58 DIAALRGYADHEALHLRHHDFKLHRRLRPQGPVARALFNAL---EQAR--VEALGARR--MPGVRANLDAMLEDRYARGG 130 (282)
T ss_pred HHHHHHhHHHHHHHHHHhcCHHHHHhhCCCChHHHHHHHHH---HHHH--HHHHhhhc--CCcHHHHHHHHHHHHHHhcC
Confidence 356789998 234456655444455443322 22332 2222 44444433 556666666666653 2333
Q ss_pred hhhcccCCchhhhHHHHHHHh-------HHHHHHHHHHHHHHHhhhhccCCcHHHHHHH
Q 006738 77 LEKTALNDNEESGKVLLMLGK-------VQFELQKLVDAYRSHIFQTITIPSESLLNEL 128 (633)
Q Consensus 77 l~kta~~dd~e~g~v~l~lgk-------~q~EL~kL~d~yr~nI~~tIt~PsESLLkeL 128 (633)
+.......+..+..+|..+.. +.....++++-+|..|...|..-+..|...+
T Consensus 131 ~~~~~~~~~~~l~~al~l~lr~rl~g~~~p~~~~~~~~~~R~~l~~~~g~~L~~L~~~~ 189 (282)
T PF06213_consen 131 FDRITDREDAPLSEALALLLRERLTGQPPPESAEKVVELWRPWLEEKAGKDLDGLRDSL 189 (282)
T ss_pred CCcccCcccccHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222233234444433321 2345677788778877776555555554433
No 160
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=47.84 E-value=2.7e+02 Score=27.05 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=42.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHH
Q 006738 38 SQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFE 101 (633)
Q Consensus 38 ~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~E 101 (633)
...|..+.+++..|+..-...++...+|+.++..||.+=..+.-.+-=...|.++..++.+..+
T Consensus 37 e~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~ 100 (236)
T PF09325_consen 37 EEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEE 100 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3347778888888888888888888888888888877644321111235566676666666544
No 161
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=47.58 E-value=5.2e+02 Score=30.20 Aligned_cols=53 Identities=8% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 98 VQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 98 ~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~ 150 (633)
...++...+.+.+.++...+....+.... +....+++++.+++.++.|+....
T Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (968)
T TIGR02956 195 VDLDLAERLNELRLLALRVLNTIDDTKTSQDLAHINQLDEEFNRLVMILSRRVQ 248 (968)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555444444333 555666777888888888776554
No 162
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=47.49 E-value=4.5e+02 Score=29.47 Aligned_cols=137 Identities=20% Similarity=0.285 Sum_probs=73.7
Q ss_pred hhHHHHHHH-hHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHH
Q 006738 29 AQLDELAQA-SQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLV 106 (633)
Q Consensus 29 a~ldEl~~a-~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~ 106 (633)
..|.+..+. -++ |.+|+..|+.+-..+.+.++ .+-+.|...|.|--+. + +.-.....+-++|+.|.+...++
T Consensus 252 ~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~~~ve---~~k~~L~~~~~~~~ee-a--~~lv~~~~~plv~~~q~~~e~~l 325 (473)
T PF14643_consen 252 NALNEQIDEYHQQCMEKLRALYEKICQECLALVE---KLKQELLDWKACTEEE-A--EELVNPEFLPLVGELQSEFEEEL 325 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCChHH-H--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 333 88888888888888877654 4556677777764222 2 12234455567777777766665
Q ss_pred HHHHHHhhhhccCCcHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhH
Q 006738 107 DAYRSHIFQTITIPSESLLNELQ-TVEEMKRQC---DEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEA 182 (633)
Q Consensus 107 d~yr~nI~~tIt~PsESLLkeLk-~VeemKkqc---Dekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEea 182 (633)
....+-+ |.+-+.+. .+++|-+=| -..|+.|+.++. +.+.-....|+..|..+.++.
T Consensus 326 e~l~~~~--------E~~a~~~~~~~~~L~~f~~~~~~lwd~h~~~l~-----------~~e~~l~~~l~~~r~~~~~~~ 386 (473)
T PF14643_consen 326 EKLDKSF--------EELAKQTEAQSEDLFKFFQEAAQLWDEHRKKLS-----------KQEEELEKRLEQCREKHDQEN 386 (473)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHHHH
Confidence 5443322 11122111 111222222 234666666654 233334566777777777766
Q ss_pred hHHHHHHh
Q 006738 183 TLFVFRLK 190 (633)
Q Consensus 183 qmc~frLK 190 (633)
+-++=.|+
T Consensus 387 q~~E~~Ld 394 (473)
T PF14643_consen 387 QEKEAKLD 394 (473)
T ss_pred HHHHHHHH
Confidence 66666655
No 163
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=47.47 E-value=3.9e+02 Score=28.74 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=30.0
Q ss_pred cCCchhhhHHHHHHH------------------hHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHH
Q 006738 82 LNDNEESGKVLLMLG------------------KVQFELQKLVDAYRSHIFQTITIPSESLLNELQT 130 (633)
Q Consensus 82 ~~dd~e~g~v~l~lg------------------k~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~ 130 (633)
.++|++..+++..++ .|..||.| ||.|..-|-.+|.- =+.||+||+.
T Consensus 222 ~~~DDI~~~ll~~~~~~~~~~~~~~i~~~~fe~lf~~eL~k-f~~~~~~l~~~~~~-Q~~ll~~i~~ 286 (353)
T cd09236 222 ARADDIRPEILREAARLEREYPATEVAPAHFEDLFDKRLAK-YDKDLDAVSEEAQE-QEEILQQIEV 286 (353)
T ss_pred HHhcCchHHHHHHHHhhhcccccccccHHHHHHHHHHHHHH-hhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 345666666665543 46778877 99998888877543 3445555444
No 164
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=47.35 E-value=2.1e+02 Score=35.26 Aligned_cols=119 Identities=16% Similarity=0.225 Sum_probs=66.1
Q ss_pred hHHHHHHHhHh-HHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhH
Q 006738 30 QLDELAQASQD-MQDMRGCYDSLLSAAAATA----------NSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKV 98 (633)
Q Consensus 30 ~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~----------ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~ 98 (633)
+|+-...|.+= ++.+|+.+..|.+..-..- +.---|+|.|..|..-. -++..++=.|-|+.
T Consensus 884 dl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a--------~eq~~~ls~M~~~M 955 (1102)
T KOG1924|consen 884 DLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKA--------REQYSKLSSMHGNM 955 (1102)
T ss_pred hHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHH--------HHHHHHHHHHHHHH
Confidence 44444444444 5555555555554443221 23344655544443322 24444444444444
Q ss_pred HHHHHHHHHHHHH-HhhhhccCCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccccC
Q 006738 99 QFELQKLVDAYRS-HIFQTITIPSESLLNELQTVEEMKRQ----CDEKRNVCEYMLMRQREKGRSKN 160 (633)
Q Consensus 99 q~EL~kL~d~yr~-nI~~tIt~PsESLLkeLk~VeemKkq----cDekr~~YE~m~~~~~EKgr~k~ 160 (633)
.+|.+++.. -+|+-=+.+.|...-||+++.+|=++ -.++|+.-|.++.++..|++++.
T Consensus 956 ----~~lye~L~eYyaFd~kkysmEEFFaDi~tFrnaf~ea~~en~krRee~Ek~rr~k~a~eqseq 1018 (1102)
T KOG1924|consen 956 ----EKLYESLGEYYAFDPKKYSMEEFFADIRTFRNAFLEAVAENEKRREEEEKERRAKLAKEQSEQ 1018 (1102)
T ss_pred ----HHHHHHHHHHeecCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444432 25777888999999999999865444 45677777777665655555543
No 165
>PRK15330 cell invasion protein SipD; Provisional
Probab=47.19 E-value=49 Score=36.28 Aligned_cols=86 Identities=23% Similarity=0.367 Sum_probs=64.6
Q ss_pred HHHHH-HhHhHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHH
Q 006738 32 DELAQ-ASQDMQDMRGCYDSLLSAA-AATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAY 109 (633)
Q Consensus 32 dEl~~-a~qdm~~Mk~~ydsllsaa-aa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~y 109 (633)
.||-+ .++.|..|+..|=-.++-. ..++.=..+|.++|.+|+.|+- + ..|-++|=+.+-.++..|.+++|.|
T Consensus 132 aELW~~Is~sIssIk~dYldvYa~vVk~YTd~yQsfne~lSkls~~Is---a---GsDGntIkFd~~slk~~i~~lidKY 205 (343)
T PRK15330 132 AEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLL---P---GKDGNTVKLDVTSLKNDLNSLVNKY 205 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---c---CCCCCeeeecHHHHHHHHHHHHHhc
Confidence 56664 4666999999987777544 3467777789999999997773 2 1333457788899999999999999
Q ss_pred HHHhhhhccCCcHH
Q 006738 110 RSHIFQTITIPSES 123 (633)
Q Consensus 110 r~nI~~tIt~PsES 123 (633)
-..=-+++.||.+.
T Consensus 206 ~~~~k~~~l~pa~~ 219 (343)
T PRK15330 206 NQINSNTVLFPAQS 219 (343)
T ss_pred ccccccceeccccc
Confidence 75555788888765
No 166
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=47.07 E-value=2e+02 Score=29.58 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=51.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH------HHhhcccc
Q 006738 90 KVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVE----EMKRQCDEKRNVCEYMLMR------QREKGRSK 159 (633)
Q Consensus 90 ~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~Ve----emKkqcDekr~~YE~m~~~------~~EKgr~k 159 (633)
.+.-.|..+-.++..+.++|..... -|.-=++...+||...+ ...+.++.+|+-||..... .+||-|.+
T Consensus 91 ~i~~~l~~l~~~~~~~rK~~~~~~~-kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k 169 (237)
T cd07657 91 GTLDKLTLLIKDKRKAKKAYQEERQ-QIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDK 169 (237)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHH
Confidence 3444455555556666655533222 12333445556776666 5666667888888887651 22443322
Q ss_pred CCCCccccHHHHHHHHHhhHhhHhHHHHH
Q 006738 160 NGKGETFSLQQLQEAHDEYDQEATLFVFR 188 (633)
Q Consensus 160 ~~K~e~~i~eqle~~r~~fqEeaqmc~fr 188 (633)
-. -....|.+++-+|- ++++.+-
T Consensus 170 ~~----~~~~k~~~akNeY~--l~l~~aN 192 (237)
T cd07657 170 YQ----KACRKLHLCHNDYV--LALLEAQ 192 (237)
T ss_pred HH----HHHHHHHHHHHHHH--HHHHHHH
Confidence 21 12367888999998 7777664
No 167
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=46.96 E-value=2.5e+02 Score=26.38 Aligned_cols=67 Identities=25% Similarity=0.198 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 006738 43 DMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQT 116 (633)
Q Consensus 43 ~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~t 116 (633)
-++.+++.|+......++.-..|+++|+++-...+....- ...+- .=+...|+.++++.|...+-+.
T Consensus 54 t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~-~~~~~------rk~~~~~~~~~~k~~~~~~~~~ 120 (191)
T cd07610 54 SLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKE-DKEQA------RKKELAEGEKLKKKLQELWAKL 120 (191)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777666555533211 01110 2234555666666665444433
No 168
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.89 E-value=2.5e+02 Score=30.14 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=59.6
Q ss_pred hhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHH
Q 006738 29 AQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVD 107 (633)
Q Consensus 29 a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d 107 (633)
..+++++++..+ ..++..-.+++.......+....+|.+.+..+-.-. ...+- .++.+++++..++.+..++..|+.
T Consensus 183 ~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~~l~~l~-~~~~~-~~~~l~~~l~~~~~~~~~~~~ll~ 260 (359)
T COG1463 183 DNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLDNLATLT-AALAA-RRDALDDALAALSALAATVNDLLA 260 (359)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHhh-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 455555555555555555555555555555544322 22222 348999999999999999999999
Q ss_pred HHHHHhhhhccCCcHHHH
Q 006738 108 AYRSHIFQTITIPSESLL 125 (633)
Q Consensus 108 ~yr~nI~~tIt~PsESLL 125 (633)
.-|.++..++.. ++.+.
T Consensus 261 ~~r~~l~~~l~~-l~~~~ 277 (359)
T COG1463 261 ENRPNLNQALAN-LRPLA 277 (359)
T ss_pred hhhhhhHHHHHH-HHHHH
Confidence 999988887554 44333
No 169
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=45.85 E-value=3.4e+02 Score=27.61 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=21.0
Q ss_pred chhhhHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 006738 85 NEESGKVLLMLGKVQFELQKLVDAYRSHIFQT 116 (633)
Q Consensus 85 d~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~t 116 (633)
.+++++++-.+..+-.++..+++.++.+|-.+
T Consensus 229 ~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~ 260 (291)
T TIGR00996 229 DDALDDALAALSGASAQVRDLLAENRPNLPQA 260 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 45666666666666667777777666666544
No 170
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=45.39 E-value=55 Score=30.75 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=43.5
Q ss_pred HhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 96 GKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCE 146 (633)
Q Consensus 96 gk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE 146 (633)
-.||.||+++++.|.+=+..+-.+|--++---+..+++|+.-.|+-|.-|-
T Consensus 8 eiVq~e~~~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~ 58 (108)
T PF08855_consen 8 EIVQDELQDIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYK 58 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999888888877788899999998887666553
No 171
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=45.37 E-value=2.5e+02 Score=29.07 Aligned_cols=121 Identities=14% Similarity=0.131 Sum_probs=82.2
Q ss_pred hhhhHHHHHHHhHHHHHHHHH-HHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc
Q 006738 86 EESGKVLLMLGKVQFELQKLV-DAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGE 164 (633)
Q Consensus 86 ~e~g~v~l~lgk~q~EL~kL~-d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e 164 (633)
...|.+...+|.++.++-..+ .+|...|.+++..-+-...++.|.||.-.=.||-+|.-+.. + +.+... .+ .
T Consensus 96 ~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~k--A-k~~~~~---~~-~ 168 (229)
T cd07594 96 IKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACKTRVKK--A-KSAEAI---EQ-A 168 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-CCccch---hh-h
Confidence 368999999999999986654 56677777776666667777889999888889988887752 2 222211 11 2
Q ss_pred cccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhH--HHHHHHHHHHHHH
Q 006738 165 TFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSL--LTQAARHHAAQLS 213 (633)
Q Consensus 165 ~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsL--LtqaaRhhaAQl~ 213 (633)
.-..++-+.++++=-|++..+-+-+++-...+-+.| |-.|---||.||.
T Consensus 169 e~elr~Ae~kF~~~~E~a~~~M~~i~~~~~~~~~~L~~lv~AQl~Yh~q~~ 219 (229)
T cd07594 169 EQDLRVAQSEFDRQAEITKLLLEGISSTHANHLRCLRDFVEAQMTYYAQCY 219 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 234566777777777888888888887555554444 4455566777775
No 172
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.33 E-value=3.2e+02 Score=27.07 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=11.8
Q ss_pred hhccCCchhHHHHHHHHHH
Q 006738 191 SLKQGQSRSLLTQAARHHA 209 (633)
Q Consensus 191 sLKqgq~rsLLtqaaRhha 209 (633)
..|+.=.++.|...|..|.
T Consensus 166 ~~K~~d~k~~l~~~a~~qi 184 (200)
T cd07624 166 QNKRQDLKKILLDMAEKQI 184 (200)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666667777666543
No 173
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=45.16 E-value=1.4e+02 Score=29.09 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHhhhhhhhcccCC
Q 006738 43 DMRGCYDSLLSAAAATANS--AYEFSESLQELGACLLEKTALND 84 (633)
Q Consensus 43 ~Mk~~ydsllsaaaa~~ns--~yefsEaleemGscll~kta~~d 84 (633)
++...|..++...+..... ...|.++|++=-..+...+++.+
T Consensus 61 ~~~~~~~~~f~~~a~~L~~~~g~s~~~~w~~~~~~~~~~~~L~~ 104 (170)
T TIGR02833 61 KSPKPVNLLFESASERLKEGEGLTVYEAWKKALNEVWKQTALQK 104 (170)
T ss_pred hcchhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhccCCCH
Confidence 5677788887776664433 35788888876666656667763
No 174
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.97 E-value=1.2e+02 Score=36.21 Aligned_cols=69 Identities=10% Similarity=0.043 Sum_probs=54.7
Q ss_pred HHHhhhhccCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhH
Q 006738 110 RSHIFQTITIPSESLLNELQTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYD 179 (633)
Q Consensus 110 r~nI~~tIt~PsESLLkeLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fq 179 (633)
.-+...+.|-|+++|||.|+... .||..++|-|+..+-.-. +.++..-+-.|-..+++-+..+-|++-+
T Consensus 150 t~~~~~l~t~Pl~~llkkl~a~~e~~ra~~~~vra~~~~l~e-~v~ns~t~~~r~~~~~~~~~~qgRe~~~ 219 (717)
T KOG3726|consen 150 TADVEGLVTDPLAMLLKKLRALLENVRAVMREVRAMLLDLDE-KVTNSVTIIRRHYRVIAGLSNQGREMLK 219 (717)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccccchhhhhcchhhhhHHHhc
Confidence 34445566889999999988876 999999999999887654 8888888888888888877766666644
No 175
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=44.85 E-value=3.4e+02 Score=30.57 Aligned_cols=117 Identities=15% Similarity=0.235 Sum_probs=75.3
Q ss_pred HHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCC-ch-hhhHHHHHHHhHHHHHHHHHHHH
Q 006738 33 ELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALND-NE-ESGKVLLMLGKVQFELQKLVDAY 109 (633)
Q Consensus 33 El~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~d-d~-e~g~v~l~lgk~q~EL~kL~d~y 109 (633)
.+++-..+ +.+|-...+.|+.--- ..++.+-.+.|++++..| .++..++ +. --|..-.+||.+-.=|+.+|..|
T Consensus 63 sil~fG~~aq~~~~~~s~~mL~~vk--~~~vgd~g~~l~~l~~~l-~~~d~d~l~~~~~~f~~Kif~r~~~siqe~~~kY 139 (386)
T COG3853 63 SLLDFGAEAQEKAAAFSNRMLNEVK--ITDVGDLGKMLEQLMFIL-KRFDPDELPSDKKGFLTKIFGRSKSSIQEIFSKY 139 (386)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHH-hhcCCcccccccchHHHHHHhhhhhHHHHHHHHH
Confidence 34433333 5566666666655443 566667777888888777 3434342 22 23556678999999999999999
Q ss_pred H---HHhhhhccCCcHHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcc
Q 006738 110 R---SHIFQTITIPSESLLN---ELQTVE-EMKRQCDEKRNVCEYMLMRQREKGR 157 (633)
Q Consensus 110 r---~nI~~tIt~PsESLLk---eLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr 157 (633)
- ++|-.| .++|.+ +|...- =+-.-|++-|+.|++... |+.=|.
T Consensus 140 Qt~~~~id~I----~~~l~k~kd~L~~dn~~Le~l~~~n~~~~~~L~~-yI~age 189 (386)
T COG3853 140 QTIGAQIDRI----IESLSKGKDELTRDNKMLELLYEKNREYFEHLEK-YIAAGE 189 (386)
T ss_pred HHHHHHHHHH----HHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3 455555 456666 554433 556678999999998765 666554
No 176
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=44.74 E-value=3.6e+02 Score=27.57 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhh
Q 006738 44 MRGCYDSLLSAAAATANSAYEFSESLQELGACLLEK 79 (633)
Q Consensus 44 Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~k 79 (633)
..++++.++......+.+ .++.+.+++|....+.+
T Consensus 140 ~~~l~~~il~~i~~~l~~-~e~~~~I~~~i~~~~~~ 174 (367)
T PF04286_consen 140 HQKLLDRILEKIKEYLKS-EETRERIRDLIEEFLEE 174 (367)
T ss_pred hHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHH
Confidence 344555555544444444 33444455555555433
No 177
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.22 E-value=5.3e+02 Score=29.36 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCch---------hhhHHHHH-------HHhHHHHHH--HHHHH
Q 006738 47 CYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNE---------ESGKVLLM-------LGKVQFELQ--KLVDA 108 (633)
Q Consensus 47 ~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~---------e~g~v~l~-------lgk~q~EL~--kL~d~ 108 (633)
....+-..=.++++..+++..-+.++...|- + +.+.. .+..++.| +-++..|-+ ..+.-
T Consensus 74 ~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~-~--l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai 150 (420)
T COG4942 74 EIASLEAQLIETADDLKKLRKQIADLNARLN-A--LEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAI 150 (420)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHH
Confidence 3333333444466666666666666666553 2 22222 12222221 233344433 23445
Q ss_pred HHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHH
Q 006738 109 YRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFR 188 (633)
Q Consensus 109 yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~fr 188 (633)
|-.+|++-+--=.++|.++|+.+.+.++.....++.-+.++.++.++.++= .+..+|=++-..+++-++.--.=+
T Consensus 151 ~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl-----~~~~~E~kk~~~~l~~~l~~~q~~ 225 (420)
T COG4942 151 YYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKL-----AQLLEERKKTLAQLNSELSADQKK 225 (420)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777766666778888888888888888888888887777666654321 122333344444444344444445
Q ss_pred HhhhccCC
Q 006738 189 LKSLKQGQ 196 (633)
Q Consensus 189 LKsLKqgq 196 (633)
|++|++..
T Consensus 226 l~eL~~~~ 233 (420)
T COG4942 226 LEELRANE 233 (420)
T ss_pred HHHHHhHH
Confidence 55655543
No 178
>PRK10780 periplasmic chaperone; Provisional
Probab=43.64 E-value=2.6e+02 Score=26.77 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.9
Q ss_pred hhhccchHHHHHHhhhhcccccc
Q 006738 221 SLEAVDPHVKMVAEQQHIDYQFR 243 (633)
Q Consensus 221 sLE~lephVk~lae~~hiDy~fS 243 (633)
.++.|.-.|+.||++..+||-|.
T Consensus 121 i~~ki~~ai~~vak~~gy~~Vld 143 (165)
T PRK10780 121 ILTRIQTAVKSVANKQGYDLVVD 143 (165)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEe
Confidence 56677788999999999999996
No 179
>PF14227 UBN2_2: gag-polypeptide of LTR copia-type
Probab=42.91 E-value=1.5e+02 Score=26.03 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccC-CchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhc---cC
Q 006738 44 MRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALN-DNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTI---TI 119 (633)
Q Consensus 44 Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~-dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tI---t~ 119 (633)
...++..|+..--.--.+..+++.-++.+..-|-.- ... +|+ -.|.+.|+..-. -+++++++|.+.. ..
T Consensus 23 ~~~l~~kl~~~k~~~~~~v~~hi~~~~~l~~~L~~~-g~~i~d~--~~~~~lL~sLP~----sy~~~~~~l~~~~~~~~~ 95 (119)
T PF14227_consen 23 KIYLLRKLYSLKMDEGGSVRDHINEFRSLVNQLKSL-GVPIDDE--DKVIILLSSLPP----SYDSFVTALLYSKPEDEL 95 (119)
T ss_pred HHHHHHHHHHhHhccchhHHHHHHHHHHHHHhhccc-cccchHH--HHHHHHHHcCCH----hHHHHHHHHHccCCCCCc
Confidence 333444455444333445556666666666665322 111 222 234445554432 2788888877764 56
Q ss_pred CcHHHHHHHHHHH
Q 006738 120 PSESLLNELQTVE 132 (633)
Q Consensus 120 PsESLLkeLk~Ve 132 (633)
.+|-|..-|..-|
T Consensus 96 tl~~v~~~L~~ee 108 (119)
T PF14227_consen 96 TLEEVKSKLLQEE 108 (119)
T ss_pred CHHHHHHHHHHHH
Confidence 6676666666644
No 180
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=42.48 E-value=1.6e+02 Score=32.09 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=16.7
Q ss_pred hccccCCCCccccHHHHHHHHHhhH
Q 006738 155 KGRSKNGKGETFSLQQLQEAHDEYD 179 (633)
Q Consensus 155 Kgr~k~~K~e~~i~eqle~~r~~fq 179 (633)
+-|-+.-|.+.++.-||+.+.++|+
T Consensus 152 ~~r~EL~~~~~~l~~QL~Eeee~y~ 176 (385)
T PF15642_consen 152 KHRVELKQKQDDLTKQLEEEEEIYK 176 (385)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666678888888888
No 181
>PRK04863 mukB cell division protein MukB; Provisional
Probab=42.45 E-value=9.1e+02 Score=31.57 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhcc--------------------
Q 006738 135 KRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQ-------------------- 194 (633)
Q Consensus 135 KkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKq-------------------- 194 (633)
.......+..|+..+. ..|+-+.-.+ ...++.|+|+...+.|++..+=+...|.++++
T Consensus 406 l~elQ~el~q~qq~i~-~Le~~~~~~~-~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~ 483 (1486)
T PRK04863 406 LDVQQTRAIQYQQAVQ-ALERAKQLCG-LPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVR 483 (1486)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555543 3333332222 15677788888888888665555554443322
Q ss_pred ---C---------CchhHHHHH--HHHHHHHHHHHHHHhhhhhc---cchHHHHHHhhhhc
Q 006738 195 ---G---------QSRSLLTQA--ARHHAAQLSFVKKALKSLEA---VDPHVKMVAEQQHI 238 (633)
Q Consensus 195 ---g---------q~rsLLtqa--aRhhaAQl~fF~~GLKsLE~---lephVk~lae~~hi 238 (633)
| .++++|.++ .||.++|..--+..|+.||. ...-+..+..+.+-
T Consensus 484 ~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~ 544 (1486)
T PRK04863 484 KIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCK 544 (1486)
T ss_pred HHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 245566655 36778899999999999997 55555555555544
No 182
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=42.23 E-value=2.1e+02 Score=26.49 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=18.2
Q ss_pred hhccchHHHHHHhhhhcccccc
Q 006738 222 LEAVDPHVKMVAEQQHIDYQFR 243 (633)
Q Consensus 222 LE~lephVk~lae~~hiDy~fS 243 (633)
...|...|+.++++..+|+-|.
T Consensus 115 ~~~i~~~v~~~a~~~g~~~Vl~ 136 (158)
T PF03938_consen 115 QKKINKAVEEYAKENGYDLVLD 136 (158)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEe
Confidence 4457889999999999999987
No 183
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=42.18 E-value=6.6e+02 Score=32.19 Aligned_cols=97 Identities=15% Similarity=0.218 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHH
Q 006738 127 ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAAR 206 (633)
Q Consensus 127 eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaR 206 (633)
.|-.|+.|-.-|-+.=..-|..+. ||=|.-.+-.|-+..-.+.+-..+.| ++--|+.+.|-+.=-.+|-|==++
T Consensus 1198 nltdvK~missf~d~laeiE~Lrn---ErIKkHGaSkePLDlSDlDkLk~~LQ---~iNQ~LV~~LIn~iR~slnqme~~ 1271 (1439)
T PF12252_consen 1198 NLTDVKSMISSFNDRLAEIEFLRN---ERIKKHGASKEPLDLSDLDKLKGQLQ---KINQNLVKALINTIRVSLNQMEVK 1271 (1439)
T ss_pred chhhHHHHHHHHHhhhhHHHHHHH---HHhhccCCCCCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344555555544333333444333 55555445555555566666666666 555566666666555666666688
Q ss_pred HHHHHHHHHHHHhhhhhccchHH
Q 006738 207 HHAAQLSFVKKALKSLEAVDPHV 229 (633)
Q Consensus 207 hhaAQl~fF~~GLKsLE~lephV 229 (633)
-|+.|-..-+..|..|+.|+--+
T Consensus 1272 tf~~q~~eiq~n~~ll~~L~~tl 1294 (1439)
T PF12252_consen 1272 TFEEQEKEIQQNLQLLDKLEKTL 1294 (1439)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHh
Confidence 88999999999998888887665
No 184
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=42.04 E-value=2.7e+02 Score=25.33 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006738 131 VEEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 131 VeemKkqcDekr~~YE~m~~ 150 (633)
+++++..++.....|..++.
T Consensus 135 l~~~~~~l~~~~~~~~~~i~ 154 (202)
T PF01442_consen 135 LEELSEELTERAEELEAKIS 154 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhhHHHHHHHHH
Confidence 34444444444455555444
No 185
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=42.00 E-value=5.2e+02 Score=28.58 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--CCCCccccH
Q 006738 120 PSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSK--NGKGETFSL 168 (633)
Q Consensus 120 PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k--~~K~e~~i~ 168 (633)
=.+.+...+.++++|..-|+.--..|...+. |=.||| ..|..++++
T Consensus 323 ~~~~i~~~~~~l~~L~~~Y~~F~~aY~~LL~---Ev~RRr~~~~k~~~i~~ 370 (412)
T PF04108_consen 323 EKESIQAYIDELEQLCEFYEGFLSAYDSLLL---EVERRRAVRDKMKKIIR 370 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3446666778888888888888889999776 444444 344444333
No 186
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=42.00 E-value=3.9e+02 Score=27.22 Aligned_cols=70 Identities=10% Similarity=0.021 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHhhhhhhhcccC--CchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHH
Q 006738 60 NSAYEFSESLQELGACLLEKTALN--DNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQT 130 (633)
Q Consensus 60 ns~yefsEaleemGscll~kta~~--dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~ 130 (633)
.=+.+|+..|.+|+.....+..-. ..+-...+|..+-...--+....-.|..++. .|.-++-+|.+|+..
T Consensus 33 ~iEeeYak~L~KLak~~~~~~~~~~~~~gs~~~a~~~il~~~e~lA~~h~~~a~~L~-~~~~eL~~l~~~~e~ 104 (234)
T cd07652 33 AIEEEHARGLKKLARTTLDTYKRPDHKQGSFSNAYHSSLEFHEKLADNGLRFAKALN-EMSDELSSLAKTVEK 104 (234)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 346788999999988776543211 1233445555555555555555556666664 466666666555443
No 187
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=41.94 E-value=44 Score=28.39 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=39.8
Q ss_pred chhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh
Q 006738 27 PLAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACL 76 (633)
Q Consensus 27 p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscl 76 (633)
-..++|.+.+...+ ++++=+....+-..|-.+.-+...+..||++||..+
T Consensus 25 ~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~gi~~ 75 (77)
T smart00576 25 QESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENLGISV 75 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCccc
Confidence 35678888888877 888887777777666677788999999999998743
No 188
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=41.44 E-value=1.2e+02 Score=30.12 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhhhccCCcHHHHH
Q 006738 100 FELQKLVDAYRSHIFQTITIPSESLLN 126 (633)
Q Consensus 100 ~EL~kL~d~yr~nI~~tIt~PsESLLk 126 (633)
+||+.+..+|+.-|..+=.+--+-++.
T Consensus 27 ~el~~~~~~Yr~~m~alR~~f~ee~~~ 53 (170)
T PF14943_consen 27 KELKRRYNNYRTQMRALRSEFREEVLR 53 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999998887765554455554
No 189
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=41.24 E-value=4.5e+02 Score=27.70 Aligned_cols=168 Identities=9% Similarity=0.085 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHhhhhhhhcccCCchhhhH---HHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHH-----
Q 006738 61 SAYEFSESLQELGACLLEKTALNDNEESGK---VLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVE----- 132 (633)
Q Consensus 61 s~yefsEaleemGscll~kta~~dd~e~g~---v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~Ve----- 132 (633)
=.-+|+.-|..|..-...|....++...++ +|..+=+---++..-.+.+.-++..-|..|+..+..||+...
T Consensus 34 IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~~~s~~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~ 113 (252)
T cd07675 34 IEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCLSFYNILNELNDYAGQREVVAEEMGHRVYGELMRYSHDLKGERKMHLQ 113 (252)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 355678888888877777754443322222 221111111122222333344444445555555554443321
Q ss_pred -------H---HHHHHHHHHHHHHHHHHHHHhhcccc--CCCCc-cccHHHHHHHHHhhHhhHhHHH-----HHHh--hh
Q 006738 133 -------E---MKRQCDEKRNVCEYMLMRQREKGRSK--NGKGE-TFSLQQLQEAHDEYDQEATLFV-----FRLK--SL 192 (633)
Q Consensus 133 -------e---mKkqcDekr~~YE~m~~~~~EKgr~k--~~K~e-~~i~eqle~~r~~fqEeaqmc~-----frLK--sL 192 (633)
+ .-++.++.++.|+.-.. -.|+-+-+ +++.+ ..++.++++++..++.-.++|+ |+.. .+
T Consensus 114 ~~~klqk~l~~~~~~leksKk~Y~~ack-e~E~A~~k~~ka~~d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~ 192 (252)
T cd07675 114 EGRKAQQYLDMCWKQMDNSKKKFERECR-EAEKAQQSYERLDNDTNATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNF 192 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22344555556664332 22222222 23333 2456666777766665555554 2211 22
Q ss_pred ccCCch-------hHHHHHHHHHHHHHHHHHHHhhhhhccchHH
Q 006738 193 KQGQSR-------SLLTQAARHHAAQLSFVKKALKSLEAVDPHV 229 (633)
Q Consensus 193 Kqgq~r-------sLLtqaaRhhaAQl~fF~~GLKsLE~lephV 229 (633)
..-|.+ .+|.++=...--=..||..+++..=.||-.|
T Consensus 193 N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~~v 236 (252)
T cd07675 193 NGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFADSERKV 236 (252)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 3344443444444556666666666666555
No 190
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.12 E-value=5.2e+02 Score=31.14 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=18.1
Q ss_pred CchhhhHHHHHHHhHHHHHHHHHHHHHHH
Q 006738 84 DNEESGKVLLMLGKVQFELQKLVDAYRSH 112 (633)
Q Consensus 84 dd~e~g~v~l~lgk~q~EL~kL~d~yr~n 112 (633)
+.+.+.+|--.++.-..++.+|+..+-..
T Consensus 500 p~~ii~~A~~~~~~~~~~~~~li~~l~~~ 528 (782)
T PRK00409 500 PENIIEEAKKLIGEDKEKLNELIASLEEL 528 (782)
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34566666666666666666666666443
No 191
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=40.55 E-value=4.4e+02 Score=27.37 Aligned_cols=134 Identities=13% Similarity=0.177 Sum_probs=80.5
Q ss_pred hhhhHHHHHHHhHHHHHHHHHH-HHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccc
Q 006738 86 EESGKVLLMLGKVQFELQKLVD-AYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREK------GRS 158 (633)
Q Consensus 86 ~e~g~v~l~lgk~q~EL~kL~d-~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EK------gr~ 158 (633)
...|.+.-++|.++.+.-..+. ++...+.+++-.=+-.+.|..|.|+-.-=.||-+|.-|..- +++- +|-
T Consensus 84 ~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka---~k~~~~~~~~~K~ 160 (244)
T cd07595 84 KLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAA---HKSSGGQGAAAKV 160 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc---ccccccccccccc
Confidence 4678888888888777765554 33444444443444455667788887777899999988631 1110 111
Q ss_pred cCCCCcc-ccHHHHHHHHHhhHhhHhHHHHHHhhhcc-CCchhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006738 159 KNGKGET-FSLQQLQEAHDEYDQEATLFVFRLKSLKQ-GQSRSLLTQAARHHAAQLSFVKKALKSLEA 224 (633)
Q Consensus 159 k~~K~e~-~i~eqle~~r~~fqEeaqmc~frLKsLKq-gq~rsLLtqaaRhhaAQl~fF~~GLKsLE~ 224 (633)
...+.|- .....++.+++.+. .-|+.|+=++..+ ++...|+..-..||..=......-+..|+.
T Consensus 161 ~~l~eE~e~ae~k~e~~~e~~~--~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~ 226 (244)
T cd07595 161 DALKDEYEEAELKLEQCRDALA--TDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQE 226 (244)
T ss_pred chHHHHHHHHHHHHHHHHHHHH--HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112111 13466777777777 7777777775554 445666666677776666666665555543
No 192
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=40.33 E-value=1.6e+02 Score=25.83 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHHHhhhhhhh-cccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC---cHHHHHHHHHHHHH
Q 006738 59 ANSAYEFSESLQELGACLLEK-TALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP---SESLLNELQTVEEM 134 (633)
Q Consensus 59 ~ns~yefsEaleemGscll~k-ta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P---sESLLkeLk~Veem 134 (633)
..+..+|..-|..+...|-.- ....|.+-+.++|--|..- ++.+++.|.++...+ .+.|+.-|...|..
T Consensus 40 ~~sv~~y~~~~~~i~~~L~~~g~~i~d~~~v~~iL~~Lp~~-------y~~~~~~i~~~~~~~~~t~~el~~~L~~~E~~ 112 (119)
T PF14223_consen 40 GESVDEYISRLKEIVDELRAIGKPISDEDLVSKILRSLPPS-------YDTFVTAIRNSKDLPKMTLEELISRLLAEEMR 112 (119)
T ss_pred cccHHHHHHHHHHhhhhhhhcCCcccchhHHHHHHhcCCch-------hHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHH
Confidence 345556666666665555322 1233666677777777755 888888888887777 89999999988854
Q ss_pred HHH
Q 006738 135 KRQ 137 (633)
Q Consensus 135 Kkq 137 (633)
.+.
T Consensus 113 ~~~ 115 (119)
T PF14223_consen 113 LKS 115 (119)
T ss_pred HHH
Confidence 444
No 193
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.23 E-value=4.1e+02 Score=26.87 Aligned_cols=56 Identities=9% Similarity=-0.018 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhc
Q 006738 59 ANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTI 117 (633)
Q Consensus 59 ~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tI 117 (633)
+.=+.+|+..|.+++..... ..+-+-...+|..|-..+.-+....-.+..+|.+.|
T Consensus 32 a~iE~eYak~L~kLak~~~~---~~e~gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~v 87 (239)
T cd07647 32 AKAEEDYGKALLKLSKSAGP---GDEIGTLKSSWDSLRKETENVANAHIQLAQSLREEA 87 (239)
T ss_pred HHHHHHHHHHHHHHHhccCC---CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456778888888755421 111223334444444444444444455555555544
No 194
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=40.09 E-value=1.4e+02 Score=28.23 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 110 RSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMR 151 (633)
Q Consensus 110 r~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~ 151 (633)
+.-|.+.|--=-+.+-++|...++.+++-.+....|+..++.
T Consensus 30 ~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~ 71 (164)
T PRK14471 30 WKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKE 71 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555668999999999999999999998873
No 195
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.06 E-value=3.6e+02 Score=26.89 Aligned_cols=109 Identities=15% Similarity=0.183 Sum_probs=60.8
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhc--c
Q 006738 117 ITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLK--Q 194 (633)
Q Consensus 117 It~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLK--q 194 (633)
-.||++...+=-..++.+++.+++.++..+..-. .+|+. +.++.+...|+++-++..+.+++..-+.=-|+.++ -
T Consensus 57 WsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~-~i~~~--~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~D 133 (188)
T PF03962_consen 57 WSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEE-KIEEA--KKGREESEEREELLEELEELKKELKELKKELEKYSEND 133 (188)
T ss_pred EecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4799999888666777888888888777666554 55555 44555665564444444433322221111111111 1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHH
Q 006738 195 GQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKM 231 (633)
Q Consensus 195 gq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~ 231 (633)
.....-+.+.+.-...-.|.+.+- ++.|..|++.
T Consensus 134 p~~i~~~~~~~~~~~~~anrwTDN---I~~l~~~~~~ 167 (188)
T PF03962_consen 134 PEKIEKLKEEIKIAKEAANRWTDN---IFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHH
Confidence 122334555566666677777774 4455566654
No 196
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=39.99 E-value=5.7e+02 Score=28.92 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=16.2
Q ss_pred chhhhHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 006738 85 NEESGKVLLMLGKVQFELQKLVDAYRSHIFQT 116 (633)
Q Consensus 85 d~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~t 116 (633)
+..+..+.-.+...+.+|..|-..-..+|-..
T Consensus 250 ~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~ 281 (582)
T PF09731_consen 250 NSLIAHAKERIDALQKELAELKEEEEEELERA 281 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544444444443
No 197
>PF06260 DUF1024: Protein of unknown function (DUF1024); InterPro: IPR009368 This entry is represented by Bacteriophage 92, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins from Staphylococcus aureus, which are related to Orf64 from Staphylococcus phage 92 (Bacteriophage 92). The function of this family is unknown.
Probab=39.93 E-value=69 Score=28.94 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhH
Q 006738 121 SESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYD 179 (633)
Q Consensus 121 sESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fq 179 (633)
-|.||||+..|=.=++-|||-.++|-..+- .-.|+--+.-+.-+...+|+.-+..+=|
T Consensus 22 te~llkEiedVYKKAqaFDeI~e~~~~~~~-~~~~~~~~ldea~~im~~q~i~~yeEeq 79 (82)
T PF06260_consen 22 TEGLLKEIEDVYKKAQAFDEILEDINNQIQ-EYRKEDIELDEAVGIMVEQVIYEYEEEQ 79 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccchHHHHHHHHHHHHHHhhhhh
Confidence 488999999998888899999999877765 6667666667777777777765554433
No 198
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=39.77 E-value=6.1e+02 Score=28.77 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhHhhHhHHHHHHhhh
Q 006738 168 LQQLQEAHDEYDQEATLFVFRLKSL 192 (633)
Q Consensus 168 ~eqle~~r~~fqEeaqmc~frLKsL 192 (633)
.++|..+++.-+||.+....-|+.|
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l 300 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQL 300 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999888533
No 199
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=38.78 E-value=55 Score=27.50 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=36.4
Q ss_pred hhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Q 006738 28 LAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGAC 75 (633)
Q Consensus 28 ~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGsc 75 (633)
..+||-|.+...+ |++|=......-..+-.+.-+...+..+|++||..
T Consensus 26 ~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~~gi~ 74 (77)
T PF07524_consen 26 PSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEEMGIS 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 4568888888877 77776666666666666777889999999999863
No 200
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=38.52 E-value=5e+02 Score=27.43 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=31.8
Q ss_pred HhhhHHHHHHHHHHHhh---hhhhh--cccCCchhhhHHHHHHHh---------HHHHHHHHHHHHHHHhhhhcc
Q 006738 58 TANSAYEFSESLQELGA---CLLEK--TALNDNEESGKVLLMLGK---------VQFELQKLVDAYRSHIFQTIT 118 (633)
Q Consensus 58 ~~ns~yefsEaleemGs---cll~k--ta~~dd~e~g~v~l~lgk---------~q~EL~kL~d~yr~nI~~tIt 118 (633)
.+.....+.+-|++|.. .+++. ...++|++..+.+...++ |+.||.| ||.|..-|-.+|.
T Consensus 191 ~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~k-f~~~~~~i~~~~~ 264 (342)
T cd08915 191 VVSSLRPLLNEVSELEKERERFISELEIKSRNNDILPKLITEYKKNGTTEFEDLFEEHLKK-FDKDLTYVEKTKK 264 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHhhccccchhHHHHHHHHHH-HhHHHHHHHHHHH
Confidence 34444445555544442 12222 134456666666655543 5567755 7777777766643
No 201
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=38.10 E-value=4.8e+02 Score=27.10 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhcc--cCCchhhhHHHHHHHhHHHHHHHHHHH---HHHHhhhhccCCcHHHH
Q 006738 60 NSAYEFSESLQELGACLLEKTA--LNDNEESGKVLLMLGKVQFELQKLVDA---YRSHIFQTITIPSESLL 125 (633)
Q Consensus 60 ns~yefsEaleemGscll~kta--~~dd~e~g~v~l~lgk~q~EL~kL~d~---yr~nI~~tIt~PsESLL 125 (633)
.-......++++++..-+.... ....+|+|..--.|-.++.+|+.++.. ...++.+-+..|+-.+.
T Consensus 192 ~pl~~l~~~~~~i~~g~~~~~~~~~~~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~ 262 (461)
T PRK09470 192 KPARKLKNAADEVAQGNLRQHPELETGPQEFRQAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQ 262 (461)
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHH
Confidence 3445566777777765443211 124689999988888999999988875 46678888888887654
No 202
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=36.60 E-value=1.5e+02 Score=28.95 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=28.7
Q ss_pred hhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 113 IFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMR 151 (633)
Q Consensus 113 I~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~ 151 (633)
|.++|--=-+.+-++|...++.+++-++..+.||..+..
T Consensus 56 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~ 94 (181)
T PRK13454 56 IGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALAD 94 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444567899999999999999999999973
No 203
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=36.35 E-value=1.6e+02 Score=27.14 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=4.6
Q ss_pred hhhhhccchHHHHHH
Q 006738 219 LKSLEAVDPHVKMVA 233 (633)
Q Consensus 219 LKsLE~lephVk~la 233 (633)
+++|+....-++.+-
T Consensus 84 ~~al~~~~~~Lk~~~ 98 (171)
T PF03357_consen 84 VKALKQSSKALKKIN 98 (171)
T ss_dssp SSS----SHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 204
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=36.34 E-value=1.2e+02 Score=31.25 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=62.6
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHH
Q 006738 95 LGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQE 173 (633)
Q Consensus 95 lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~ 173 (633)
-+++|.+..- +.|..+.+++-+..-.+-..+||..-+ .+.+|++++.+.+...-. .++.|.|+ -.+|||.
T Consensus 104 r~v~~~~~~~-~~ns~~~k~~~~g~~~~~~~~el~~ek~kL~~q~~e~~e~lr~L~~--~k~~r~Kn------~~~~Lq~ 174 (221)
T PF10376_consen 104 RSVCQAASSY-LLNSSSPKIQKMGGYEELKQQELEEEKRKLEKQVDEKEEELRRLKL--VKQYRSKN------DLEQLQS 174 (221)
T ss_pred cccchhhchh-hhhhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHhhc------cHHHHHH
Confidence 3455554443 333344444433333444455777655 788888888888776542 22333222 1245555
Q ss_pred HHHhhHhhHhHHHHHHh-hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHhhhhccccccC
Q 006738 174 AHDEYDQEATLFVFRLK-SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDYQFRG 244 (633)
Q Consensus 174 ~r~~fqEeaqmc~frLK-sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae~~hiDy~fSg 244 (633)
-...+..-.|--.+.|- .+.+ -|.=++-+..|...+.|||.+-+
T Consensus 175 lI~Kwr~~~q~~l~eL~~~~~~---------------------------~e~~~~TM~eL~~~l~ID~~LI~ 219 (221)
T PF10376_consen 175 LIKKWRSASQEALYELQSEMSE---------------------------EEGEKFTMGELIKRLGIDYDLIH 219 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---------------------------ccccCccHHHHHHHhCCCccccC
Confidence 55555533333333322 1111 34447788999999999998865
No 205
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.29 E-value=5.1e+02 Score=26.90 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=32.4
Q ss_pred cccccchhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh
Q 006738 22 RRDLRPLAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLL 77 (633)
Q Consensus 22 r~~~~p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll 77 (633)
+|...|+++.+-++....+ ++.+.+.++.|..+.... ...+-+.|+.+...+.
T Consensus 129 ~ra~TPtaaAe~~~~~~~~~~~~l~~~~~~l~~~~~~~---l~~~~~~L~~l~~~l~ 182 (319)
T PF02601_consen 129 LRAPTPTAAAELIVPDRRELLQRLDELRQRLNRAMRNR---LQRKRQRLNQLAKRLQ 182 (319)
T ss_pred hhCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 3445588886666666666 777777777776665333 3344455555555554
No 206
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=36.09 E-value=1.8e+02 Score=27.98 Aligned_cols=40 Identities=8% Similarity=0.143 Sum_probs=29.7
Q ss_pred HHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 111 SHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 111 ~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~ 150 (633)
--|.+.|--=-+.+.++|...++++++-++....|+..+.
T Consensus 41 kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~ 80 (175)
T PRK14472 41 GPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLA 80 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455666899999999999999999999886
No 207
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=35.71 E-value=4.7e+02 Score=26.31 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHhhhh
Q 006738 59 ANSAYEFSESLQELGACL 76 (633)
Q Consensus 59 ~ns~yefsEaleemGscl 76 (633)
+.+.-+..++|+.+|.|+
T Consensus 62 s~~E~~l~~~le~~g~~~ 79 (201)
T cd07622 62 SAIEKEMGDGLQKAGHYM 79 (201)
T ss_pred HhcchhHHHHHHHHHHHH
Confidence 344456667777777665
No 208
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.69 E-value=5.3e+02 Score=26.84 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=76.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHH
Q 006738 51 LLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQT 130 (633)
Q Consensus 51 llsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~ 130 (633)
+..+-..+.+-+...+..=+.++.+|. .++..-+..|..-.++.+|....+.. ...-|.+..++ .
T Consensus 65 ~~~aw~~~l~e~~~~A~~H~~~~~~L~--------~~v~~~l~~~~~~~k~~rK~~~~~~~----k~qk~~~~~~~---~ 129 (253)
T cd07676 65 SCRAFLMTLNEMNDYAGQHEVISENLA--------SQIIVELTRYVQELKQERKSHFHDGR----KAQQHIETCWK---Q 129 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---H
Confidence 344444455555566666666666665 33334344444433444444433322 22445555554 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc---------CCCCccccH-HHHHHHHHhhHhhHhHHHHHHhhhccCCch--
Q 006738 131 VEEMKRQCDEKRNVCEYMLMRQREKGRSK---------NGKGETFSL-QQLQEAHDEYDQEATLFVFRLKSLKQGQSR-- 198 (633)
Q Consensus 131 VeemKkqcDekr~~YE~m~~~~~EKgr~k---------~~K~e~~i~-eqle~~r~~fqEeaqmc~frLKsLKqgq~r-- 198 (633)
|+.-|+-||+..++=|.-.. +-+|-..- ..|.-...+ ++++++..+|. .+|..+- ..+.....
T Consensus 130 lekaKk~Y~~acke~E~A~~-~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aKn~Y~--~~l~~~N--~~q~~~Y~e~ 204 (253)
T cd07676 130 LESSKRRFERDCKEADRAQQ-YFEKMDADINVTKADVEKARQQAQIRHQMAEDSKAEYS--SYLQKFN--KEQHEHYYTH 204 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--HHhhhhHHHH
Confidence 55678888888887777554 33333321 111111112 67788888888 4444331 22211222
Q ss_pred --hHHHHHHHHHHHHHHHHHHHhhhhhccchHH
Q 006738 199 --SLLTQAARHHAAQLSFVKKALKSLEAVDPHV 229 (633)
Q Consensus 199 --sLLtqaaRhhaAQl~fF~~GLKsLE~lephV 229 (633)
.+|.++=...--=..||..+|+-.=.++-.|
T Consensus 205 mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~~~ 237 (253)
T cd07676 205 IPNIFQKIQEMEERRIGRVGESMKTYAEVDRQV 237 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222233333456666665554444444
No 209
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=35.65 E-value=5e+02 Score=26.77 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=37.9
Q ss_pred hhhHHHHHHHhHHHHHHHHHH-HHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 87 ESGKVLLMLGKVQFELQKLVD-AYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVC 145 (633)
Q Consensus 87 e~g~v~l~lgk~q~EL~kL~d-~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~Y 145 (633)
..|.++..+|.++.++...+. +|..-+.+++..-+-...++.|.|+-..=.||-+|.-+
T Consensus 92 ~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~k~k~ 151 (223)
T cd07592 92 EVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYKKRKQ 151 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777788888777765443 44444444444444455667788886666777776655
No 210
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=35.57 E-value=2.5e+02 Score=29.09 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=63.5
Q ss_pred hccCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccH-HHHHHHHHhhHhhHhHHHHH-Hh-h
Q 006738 116 TITIPSESLLNELQTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSL-QQLQEAHDEYDQEATLFVFR-LK-S 191 (633)
Q Consensus 116 tIt~PsESLLkeLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~-eqle~~r~~fqEeaqmc~fr-LK-s 191 (633)
--+||||.+- +++.|. +|-.||+.-++.--+... ++|+.|.-+-+.|- + +||.+...--+++++..-.- .| .
T Consensus 68 ywsfps~a~~-~~ks~~qeLe~~L~~~~qk~~tl~e-~~en~K~~~e~tEe--r~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 68 YWSFPSEAIC-DRKSVLQELESQLATGSQKKATLGE-SIENRKAGREETEE--RTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred ccccchHHHH-HHHHHHHHHHHHHHHhhhhHhHHHH-HHHHHHhhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3579999876 455666 899999988887666654 77776553333332 3 35555555444433322222 22 4
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHHH
Q 006738 192 LKQGQSRSLLTQAARHHAAQLSFVKKA 218 (633)
Q Consensus 192 LKqgq~rsLLtqaaRhhaAQl~fF~~G 218 (633)
.--+|-+.++-++-+-++--+|...+-
T Consensus 144 e~dpqv~~k~~~~~K~~~eaanrwtDn 170 (203)
T KOG3433|consen 144 ETDPQVFEKKVHLEKTMAEAANRWTDN 170 (203)
T ss_pred hcCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456778888888888888888887774
No 211
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=35.40 E-value=8.6e+02 Score=29.21 Aligned_cols=75 Identities=23% Similarity=0.187 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhH
Q 006738 100 FELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYD 179 (633)
Q Consensus 100 ~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fq 179 (633)
.||.+|+..|...+.+.|.-|.+.||.... +.-.|.=|+.|+.... .-+.+=....++.++..++.++....|+
T Consensus 421 ~el~~l~~~~eK~l~~~l~e~v~~~l~~~~-----~d~Wd~I~~~f~~~~~-~~~~~~~~~~~~f~~s~~e~~~~~~~lr 494 (742)
T PF05879_consen 421 EELNELVARIEKKLKSELKEPVESLLENPS-----PDMWDRIRKLFESATE-SAVSKFSDRLKGFGLSEEENEKALKKLR 494 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCCC-----hhhHHHHHHHHHHHHH-HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 345555556666666666666666665221 2223444555555554 2233333445666888888888777777
Q ss_pred h
Q 006738 180 Q 180 (633)
Q Consensus 180 E 180 (633)
.
T Consensus 495 ~ 495 (742)
T PF05879_consen 495 R 495 (742)
T ss_pred H
Confidence 3
No 212
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=35.14 E-value=7.3e+02 Score=28.30 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=58.7
Q ss_pred chhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 006738 85 NEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP--SESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGK 162 (633)
Q Consensus 85 d~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~P--sESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K 162 (633)
|+..+.+.-.|..+..+|..+...++.-...+-.-| ++.|-..|..++.+|+-|... .+..+. ++++-+.+...
T Consensus 265 d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s---~e~l~~-~~~~l~~eL~~ 340 (563)
T TIGR00634 265 DGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGAS---VEEVLE-YAEKIKEELDQ 340 (563)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCC---HHHHHH-HHHHHHHHHHH
Confidence 556666666677777777777666665444442234 344444666666666666533 333333 33333333222
Q ss_pred Cccc--cHHHHHHHHHhhHhhHhHHHHHHhhhc
Q 006738 163 GETF--SLQQLQEAHDEYDQEATLFVFRLKSLK 193 (633)
Q Consensus 163 ~e~~--i~eqle~~r~~fqEeaqmc~frLKsLK 193 (633)
-+.. ..++|+++..++++++.-+...|..++
T Consensus 341 l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 341 LDDSDESLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 347788888888877766666665444
No 213
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=35.09 E-value=31 Score=37.02 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=10.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q 006738 52 LSAAAATANSAYEFSESLQEL 72 (633)
Q Consensus 52 lsaaaa~~ns~yefsEaleem 72 (633)
+..|++.|.-.-.|-|||==-
T Consensus 89 ~~tGl~mvGaiCDfCEawvCH 109 (314)
T PF06524_consen 89 FTTGLGMVGAICDFCEAWVCH 109 (314)
T ss_pred eecccchhhhhhccchhheec
Confidence 344555555555555555433
No 214
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=34.92 E-value=1.8e+02 Score=28.06 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 120 PSESLLNELQTVEEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 120 PsESLLkeLk~VeemKkqcDekr~~YE~m~~ 150 (633)
=-+-+.++|...++.+++-.+....|+..+.
T Consensus 48 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~ 78 (173)
T PRK13460 48 RASGVQNDINKASELRLEAEALLKDYEARLN 78 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455788999999999999999998886
No 215
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=34.71 E-value=5.6e+02 Score=30.16 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=12.0
Q ss_pred hhhHHHHHHHhHHHHHHHHHHH
Q 006738 87 ESGKVLLMLGKVQFELQKLVDA 108 (633)
Q Consensus 87 e~g~v~l~lgk~q~EL~kL~d~ 108 (633)
.+..++..|..+..||+..++.
T Consensus 270 ~l~ea~~~l~ea~~el~~~~~~ 291 (557)
T COG0497 270 LLEEALYELEEASEELRAYLDE 291 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555544
No 216
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=34.35 E-value=1.9e+02 Score=27.46 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 122 ESLLNELQTVEEMKRQCDEKRNVCEYMLMR 151 (633)
Q Consensus 122 ESLLkeLk~VeemKkqcDekr~~YE~m~~~ 151 (633)
+-+.++|...++.+++-++....|+..+..
T Consensus 56 ~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~ 85 (156)
T CHL00118 56 EYIRKNLTKASEILAKANELTKQYEQELSK 85 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457999999999999999999999973
No 217
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=34.11 E-value=2.6e+02 Score=33.46 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=14.3
Q ss_pred chhhhHHHHHHHhHHHHHHHHHHHHHH
Q 006738 85 NEESGKVLLMLGKVQFELQKLVDAYRS 111 (633)
Q Consensus 85 d~e~g~v~l~lgk~q~EL~kL~d~yr~ 111 (633)
.+.+.+|--.++....++.+|+..+-.
T Consensus 496 ~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 496 HFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344555555555555555555555433
No 218
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.00 E-value=4.4e+02 Score=25.40 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHh
Q 006738 198 RSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAE 234 (633)
Q Consensus 198 rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae 234 (633)
-+.|..+-.|.+.+-++|......+..|+..+..|..
T Consensus 155 ~~~lekL~~fd~~~~~~~~~~~~~~~~l~~~l~~l~~ 191 (204)
T PF04740_consen 155 QETLEKLRAFDQQSSSIFSEIEELLQALQSGLSQLQS 191 (204)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888877777777777666654
No 219
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=33.95 E-value=5.7e+02 Score=26.70 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=68.6
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 006738 87 ESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN----ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGK 162 (633)
Q Consensus 87 e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk----eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K 162 (633)
..|.+.-.+|.++.+ ++.+--+|.+.-|..-+|+-+| +.|.|+--.=.||-+|.-|.. + +.+-.|.. -
T Consensus 97 ~~g~a~~kia~~~~~---~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~k--A-k~~~~~~~--~ 168 (229)
T cd07616 97 KCGETQKQIGTADRE---LIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLKK--A-KVAEARAA--A 168 (229)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-Ccchhhcc--h
Confidence 678888899988886 5555555555555555666665 566677656678888887753 1 22211111 1
Q ss_pred CccccHHHHHHHHHhhHhhHhHHHHHHh--hhccCCchhHHHHHHHHHHHHHHH
Q 006738 163 GETFSLQQLQEAHDEYDQEATLFVFRLK--SLKQGQSRSLLTQAARHHAAQLSF 214 (633)
Q Consensus 163 ~e~~i~eqle~~r~~fqEeaqmc~frLK--sLKqgq~rsLLtqaaRhhaAQl~f 214 (633)
.+ ..+..|.++++=-|++..|-+-|+ .-.+-+-..-|-.|---||.||.=
T Consensus 169 e~--elr~ae~efees~E~a~~~m~~i~~~~~e~~~~L~~lv~AQl~Yh~~~~e 220 (229)
T cd07616 169 EQ--ELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQCYQ 220 (229)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 234455555555666667777777 343333333344555556677753
No 220
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=33.70 E-value=6.1e+02 Score=26.95 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=39.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccH
Q 006738 90 KVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNEL-QTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSL 168 (633)
Q Consensus 90 ~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeL-k~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~ 168 (633)
.++-+|.....+.+.+=+.|...+..+ -+.+-+-. ..|+.+|++||+.=+++|.-+. +-||.-++
T Consensus 95 ~~~~kLs~L~~~k~~~rK~~~~~~q~i----~~e~~~~t~~eveK~Kk~Y~~~c~~~e~AR~-K~ekas~~--------- 160 (237)
T cd07685 95 GPLSKLSLLIRDKQQLRKTFSEQWQLL----KQEYTKTTQQDIEKLKSQYRSLAKDSAQAKR-KYQEASKD--------- 160 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccc---------
Confidence 344555555555555555554433322 11222222 2577788888888888777664 44443211
Q ss_pred HHHHHHHHhhH
Q 006738 169 QQLQEAHDEYD 179 (633)
Q Consensus 169 eqle~~r~~fq 179 (633)
-..+++++-|.
T Consensus 161 K~~~K~~EKy~ 171 (237)
T cd07685 161 KDRDKAKEKYV 171 (237)
T ss_pred hhHHHHHHHHH
Confidence 34555666565
No 221
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=33.61 E-value=5.5e+02 Score=26.47 Aligned_cols=122 Identities=19% Similarity=0.160 Sum_probs=78.8
Q ss_pred cchhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhh-cccC-CchhhhHHHHHHHhHHHHHH
Q 006738 26 RPLAQLDELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEK-TALN-DNEESGKVLLMLGKVQFELQ 103 (633)
Q Consensus 26 ~p~a~ldEl~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~k-ta~~-dd~e~g~v~l~lgk~q~EL~ 103 (633)
+-.++||.+-+..+-...|-+..+.+...=.+.+...-+|.+.+.++|.. ++ .++. .=.-.|.++..+++....|.
T Consensus 34 eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~--e~~~~l~~~f~~~~~~~~~~~~~~~~L~ 111 (229)
T PF06456_consen 34 ELDAKLELLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVR--EKSPALGEEFSANGEAQRSLAKQGETLL 111 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-CCGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667666655555577888899999988888888899999999999984 22 1122 23567888888888888887
Q ss_pred HHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 104 KLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYML 149 (633)
Q Consensus 104 kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~ 149 (633)
+-++-+.+.|+--+.-=.+.-+--++..|+-+=.||-.|-..+.|=
T Consensus 112 ~~l~~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~ 157 (229)
T PF06456_consen 112 KALKRFLSDLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMS 157 (229)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777776665543333333333333344444555555555555543
No 222
>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAP3 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers wit
Probab=33.37 E-value=6.3e+02 Score=27.07 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=23.5
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHH
Q 006738 94 MLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTV 131 (633)
Q Consensus 94 ~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~V 131 (633)
.|-+|+-||+..+++|- +-++=+.-.|+=|+|...+
T Consensus 127 eLlkV~~EL~t~mKTY~--~y~~e~~~ae~KL~eaE~q 162 (253)
T cd07684 127 ELLKVTNELYTVMKTYH--MYHAESISAESKLKEAEKQ 162 (253)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHH
Confidence 47789999999999994 4444333366666544333
No 223
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.37 E-value=7.9e+02 Score=29.10 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhccCCc
Q 006738 101 ELQKLVDAYRSHIFQTITIPS 121 (633)
Q Consensus 101 EL~kL~d~yr~nI~~tIt~Ps 121 (633)
+|.+.+.+|..+|+.|+-++.
T Consensus 434 ~~L~~I~~yIt~~l~ifG~~e 454 (586)
T KOG2007|consen 434 ALLKAIASYITKLLKIFGLSE 454 (586)
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 888889999999999988873
No 224
>PF02387 IncFII_repA: IncFII RepA protein family; InterPro: IPR003446 These proteins are plasmid encoded and essential for plasmid replication, they are also involved in copy control functions [].; GO: 0006276 plasmid maintenance
Probab=32.91 E-value=3.1e+02 Score=29.37 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=43.7
Q ss_pred hHHHHH-HHHHHHhhhhhhhcccCCchhhh-----------HHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHH
Q 006738 61 SAYEFS-ESLQELGACLLEKTALNDNEESG-----------KVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLL 125 (633)
Q Consensus 61 s~yefs-EaleemGscll~kta~~dd~e~g-----------~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLL 125 (633)
.+--.+ |-|+.||-|-.++.- |..+| ..|++||....+|.+........+++-+.-+-+.-+
T Consensus 120 RasR~i~e~le~~Gli~~~~~~---D~~~~~~~Pk~I~lT~~ff~l~gi~~~kl~~~~~~~l~~~~~~~~~~~~~~i 193 (281)
T PF02387_consen 120 RASRLISEFLEPLGLITCEKEW---DPYNGNYIPKHIWLTPLFFMLLGISEDKLRREQRQRLQWENNGLSKQGEEPI 193 (281)
T ss_pred HHHHHHHHHHHhcCCeeeeeee---chhhccccCeEEEECHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 344444 558899987654432 45454 468999999999999999988888887766554444
No 225
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=32.78 E-value=5.3e+02 Score=27.02 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=46.7
Q ss_pred HHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHhhhhccccccCCCCCC
Q 006738 174 AHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDYQFRGLEDDD 249 (633)
Q Consensus 174 ~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae~~hiDy~fSgLedd~ 249 (633)
.-..|+|-+++|.-.++..-.|| .=++|-+ =..+.=+++-|.+|-=|+|.|.-|++. ||.-++.|...+
T Consensus 169 ~~~l~~Eia~~A~~~~~~~~~gk--~~v~~ka---l~~lr~i~~Kl~~lsFld~~v~~l~~~--i~~~L~~lP~~G 237 (257)
T PF11348_consen 169 GGQLFDEIAQEARDILEKSFAGK--DQVSQKA---LSPLRRIRDKLAGLSFLDPRVAPLVDM--IDAVLNSLPKSG 237 (257)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCc--ccccHhH---HHHHHHHHHHHhhhcccchhhHHHHHH--HHHHHHhCCCCC
Confidence 44568888889877776433344 3333322 123445677888999999999999874 678888887654
No 226
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=32.63 E-value=2e+02 Score=33.65 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=65.8
Q ss_pred chhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006738 85 NEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN--------ELQTVEEMKRQCDEKRNVCEYMLMRQREKG 156 (633)
Q Consensus 85 d~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk--------eLk~VeemKkqcDekr~~YE~m~~~~~EKg 156 (633)
|+.++..|-.+-..=||-..+.|+||++=.+---.-.|++|. =|+++.++..+..+-++.|.+-+-.+.|=-
T Consensus 73 ~di~~~~fadvEE~lfeAE~~~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr 152 (570)
T COG4477 73 DDIVTNSFADVEEHLFEAEALADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELR 152 (570)
T ss_pred HHHHHhhcccHHHHHHHHHHhhhhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455555566666677889999999988655544445566654 366777888888777776666554332222
Q ss_pred cc--cCCCCccccHHHHHHHHHhhHhhHhHHHH
Q 006738 157 RS--KNGKGETFSLQQLQEAHDEYDQEATLFVF 187 (633)
Q Consensus 157 r~--k~~K~e~~i~eqle~~r~~fqEeaqmc~f 187 (633)
|. .++-..|-..-++++..+.+++++.=|+-
T Consensus 153 ~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf~~ 185 (570)
T COG4477 153 RDVLANRHQYGEAAPELEKKLENIEEELSQFVE 185 (570)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 21 34445555567777777777777666653
No 227
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=32.20 E-value=5.3e+02 Score=25.84 Aligned_cols=95 Identities=21% Similarity=0.236 Sum_probs=51.5
Q ss_pred CchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 006738 84 DNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKG 163 (633)
Q Consensus 84 dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~ 163 (633)
+....+++|+++|+++.++ + .+ .-..-.+.+++..+..-.+-.+..+.|.-+-.+.....+..+....+.
T Consensus 247 ~~~~~a~~~l~~a~w~~~~------~-~~---~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~ 316 (352)
T PF02259_consen 247 SKELKAKAFLLLAKWLDEL------Y-SK---LSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEES 316 (352)
T ss_pred hHHHHHHHHHHHHHHHHhh------c-cc---cccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 4578899999999998887 1 11 222334555555555556666666666543333332222222111111
Q ss_pred ccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCc
Q 006738 164 ETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQS 197 (633)
Q Consensus 164 e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~ 197 (633)
++ ....+|- ...+.+-+++|+-|..
T Consensus 317 -----~~--~~~~~~~--~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 317 -----SQ--EDRSEYL--EQAIEGYLKALSLGSK 341 (352)
T ss_pred -----ch--hHHHHHH--HHHHHHHHHHHhhCCC
Confidence 11 3455565 5555666777777766
No 228
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=31.98 E-value=8.2e+02 Score=29.41 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=32.9
Q ss_pred chhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh
Q 006738 27 PLAQLDELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLL 77 (633)
Q Consensus 27 p~a~ldEl~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll 77 (633)
....|+.+.+.++.|+.+++....+.+.-..--....++..+|.++-..|.
T Consensus 234 ~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~ 284 (806)
T PF05478_consen 234 VYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLN 284 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666677777777776666666666666666666666655553
No 229
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=31.88 E-value=2.1e+02 Score=32.19 Aligned_cols=85 Identities=22% Similarity=0.315 Sum_probs=21.9
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHH-----------
Q 006738 31 LDELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQ----------- 99 (633)
Q Consensus 31 ldEl~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q----------- 99 (633)
+.|+-+.=+||.-||--|......--++.++.-+=+.++..+ +.+-..+.|++|+.-|+-.
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~--------s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~k 221 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSA--------STNASGDSNRAYMESGKKKLSEESDRLLTK 221 (424)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666655555444444443333333332 2233467888888766643
Q ss_pred -HHHHHHHHHHHHHhhhhccCCcHH
Q 006738 100 -FELQKLVDAYRSHIFQTITIPSES 123 (633)
Q Consensus 100 -~EL~kL~d~yr~nI~~tIt~PsES 123 (633)
.+||.+|..+|..+.+-=..|+..
T Consensus 222 VdDLQD~VE~LRkDV~~RgvRp~~~ 246 (424)
T PF03915_consen 222 VDDLQDLVEDLRKDVVQRGVRPSPK 246 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHcCCcCCHH
Confidence 467788888888888877777643
No 230
>TIGR02895 spore_sigI RNA polymerase sigma-I factor. Members of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock (PubMed:11157964) in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (PubMed:16311624).
Probab=31.73 E-value=4.3e+02 Score=26.95 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=37.7
Q ss_pred HHHHHHHHhhHhhHhHHHHHHh-----hhccCCchhHHHHHHHHHHHHHHHHHH
Q 006738 169 QQLQEAHDEYDQEATLFVFRLK-----SLKQGQSRSLLTQAARHHAAQLSFVKK 217 (633)
Q Consensus 169 eqle~~r~~fqEeaqmc~frLK-----sLKqgq~rsLLtqaaRhhaAQl~fF~~ 217 (633)
++...|-.+|++++.-|+.-|+ +=|+...|.++.++|+.=+.--.+|..
T Consensus 117 ~~~~eEI~~~~~~L~~~gi~~~dLv~~sPkh~d~r~~~i~ia~~~~~~~~l~~~ 170 (218)
T TIGR02895 117 ENRRLEILEYKKLLKQFGIEFVELVKVSPKHRDTRKKAIKIAKVIVENEELLEY 170 (218)
T ss_pred ccHHHHHHHHHHHHHHcCCcHHHHhhcCCCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4555677889988888877777 668889999999999887766555544
No 231
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=31.68 E-value=3.9e+02 Score=28.54 Aligned_cols=17 Identities=35% Similarity=0.360 Sum_probs=14.8
Q ss_pred HHHhHHHHHHHHHHHHH
Q 006738 94 MLGKVQFELQKLVDAYR 110 (633)
Q Consensus 94 ~lgk~q~EL~kL~d~yr 110 (633)
.|.+|+-||+..+++|-
T Consensus 128 eLlkV~~EL~t~mKtY~ 144 (253)
T cd07683 128 DLMKVLNELYTVMKTYH 144 (253)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57889999999999994
No 232
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=31.65 E-value=7e+02 Score=27.06 Aligned_cols=181 Identities=21% Similarity=0.255 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHH-------HHHHHHHhh
Q 006738 42 QDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKL-------VDAYRSHIF 114 (633)
Q Consensus 42 ~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL-------~d~yr~nI~ 114 (633)
.||++|.+.+....+++..-...|.....+|...|- .|+|.. -.++-.+.-.-.||+.| |+.-+...-
T Consensus 20 ~Dl~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~n~e~q-~~lw~~i~el~~~L~~l~~er~~~v~~ri~~~e 94 (289)
T PF05149_consen 20 EDLERIKEKIQNTDAEDAAQRKRYAAQRKESEKFLQ----KNEEQQ-QELWREIQELERELQDLAEERREEVERRIEMRE 94 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888888888888886664 221111 11111122222222222 221111100
Q ss_pred h---hccCCcHHHHH-HHHHH---HHHHHHHHHHHH---HHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhH
Q 006738 115 Q---TITIPSESLLN-ELQTV---EEMKRQCDEKRN---VCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATL 184 (633)
Q Consensus 115 ~---tIt~PsESLLk-eLk~V---eemKkqcDekr~---~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqm 184 (633)
. -++- -+++|+ -=+.. ..+-.-||.... .|+..+..-.-+=.++.-|...-..+.+..++.+|=+=--+
T Consensus 95 qE~~R~~~-~~~Fl~~~~qh~q~L~~~~~n~~~~~~~~~~~~~~V~~~~~~l~~~~d~~~~~~~el~~~~~qe~l~~yr~ 173 (289)
T PF05149_consen 95 QEAKRRTA-AEEFLQAASQHKQRLRRCEENCDRALSCAESLEEYVQEGCPKLPKKHDKAQEALAELLLEEAQEYLERYRM 173 (289)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 122222 00011 111122222222 24444433333333444444444445666666666666667
Q ss_pred HHHHHhhhccCCchhH--HHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHh
Q 006738 185 FVFRLKSLKQGQSRSL--LTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAE 234 (633)
Q Consensus 185 c~frLKsLKqgq~rsL--LtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae 234 (633)
|.|-+-+|.-+|-+.| |.-.||+++-|..| ++|+|+|+.+.-++
T Consensus 174 fy~a~gel~~KKe~rle~l~~~iR~~~~~~E~------ameTlDPnAk~y~~ 219 (289)
T PF05149_consen 174 FYLALGELRYKKERRLEELDRQIRSTHLQQER------AMETLDPNAKKYSK 219 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcCCcHHHHHH
Confidence 8888888888888766 77889999999887 56777777765443
No 233
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.42 E-value=6e+02 Score=26.18 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006738 129 QTVEEMKRQCDEKRNVCEYM 148 (633)
Q Consensus 129 k~VeemKkqcDekr~~YE~m 148 (633)
+.|+..|+-|..+-+++|..
T Consensus 121 ~~~~kaKk~y~~~cke~e~~ 140 (233)
T cd07649 121 AAVEKARKALLERQKDLEGK 140 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666653
No 234
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=31.14 E-value=2.6e+02 Score=27.37 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhH
Q 006738 43 DMRGCYDSLLSAAAATA--NSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKV 98 (633)
Q Consensus 43 ~Mk~~ydsllsaaaa~~--ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~ 98 (633)
++...|..++...+... +...-|.|+|++=-..+...+++++++ =.+|..||+.
T Consensus 62 ~~~~~~~~~f~~~a~~L~~~~g~s~~eaw~~~~~~~~~~~~L~~~d--~eiL~~lg~~ 117 (171)
T PRK08307 62 QSPKPISTLFQRFSERLESGEGETAYEAWEKALEENWKNTALKKED--IEILLQFGKT 117 (171)
T ss_pred ccchhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhccCCCHHH--HHHHHHHHHH
Confidence 56777888877777644 334678888888666666667777322 1244444443
No 235
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=31.12 E-value=6.6e+02 Score=26.58 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=13.5
Q ss_pred ccccHHHHHHHHHhhHhhHhHHHHH
Q 006738 164 ETFSLQQLQEAHDEYDQEATLFVFR 188 (633)
Q Consensus 164 e~~i~eqle~~r~~fqEeaqmc~fr 188 (633)
+.+-.++|++ ++-|+..++-...+
T Consensus 242 e~lf~~eL~k-f~~~~~~i~~~~~~ 265 (342)
T cd08915 242 EDLFEEHLKK-FDKDLTYVEKTKKK 265 (342)
T ss_pred HHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 4455567755 66666555544443
No 236
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=30.20 E-value=1.8e+02 Score=28.21 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=41.6
Q ss_pred HHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhc
Q 006738 57 ATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTI 117 (633)
Q Consensus 57 a~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tI 117 (633)
..++ ...|.+.|++|-.||..=.+-.+=-|+..-.++|--++-=-..|+++|..|++..+
T Consensus 90 ~sV~-~~~F~~~L~~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk~y~~~~l~~~ 149 (157)
T PF04136_consen 90 SSVN-SDSFKPMLSRLDECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIKNYVVNTLRSA 149 (157)
T ss_pred Cccc-chHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 78899999999999964433225556666666666666666667777777776665
No 237
>PRK12704 phosphodiesterase; Provisional
Probab=30.18 E-value=1.1e+02 Score=34.95 Aligned_cols=78 Identities=17% Similarity=0.285 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHH-----HHHHHHhhHhhHhHHHHHH----hhhccCCchhH
Q 006738 130 TVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQ-----LQEAHDEYDQEATLFVFRL----KSLKQGQSRSL 200 (633)
Q Consensus 130 ~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eq-----le~~r~~fqEeaqmc~frL----KsLKqgq~rsL 200 (633)
.+++.++.++++.+.|+.++. +...+.-+-.||+.+| |++..++...|+...+=.+ |+=-.++.+.+
T Consensus 118 ~Le~re~eLe~~~~~~~~~~~----~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i 193 (520)
T PRK12704 118 ELEQKQQELEKKEEELEELIE----EQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEI 193 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777663 4444677778888866 4445555555555544333 34446788889
Q ss_pred HHHHHHHHHHH
Q 006738 201 LTQAARHHAAQ 211 (633)
Q Consensus 201 LtqaaRhhaAQ 211 (633)
|.+|+-.|++-
T Consensus 194 ~~~a~qr~a~~ 204 (520)
T PRK12704 194 LAQAIQRCAAD 204 (520)
T ss_pred HHHHHHhhcch
Confidence 99998888764
No 238
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=29.84 E-value=2.6e+02 Score=28.14 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=64.5
Q ss_pred HHHHHHHHhhhhccCCcHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhh
Q 006738 105 LVDAYRSHIFQTITIPSESLLN-ELQTV--EEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQE 181 (633)
Q Consensus 105 L~d~yr~nI~~tIt~PsESLLk-eLk~V--eemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEe 181 (633)
-|++|...|.. |+ +|+.| .|++.++=+--+.+.-+++++.+-=|....+-+|+..+..+.+...-+-|
T Consensus 48 ~yknyk~ki~e---------Lke~lK~~~NAEleekll~lq~lfq~Kl~aKL~aLKAak~~i~~~~d~d~~~~k~~Iw~e 118 (160)
T PF03978_consen 48 AYKNYKKKINE---------LKEDLKDVSNAELEEKLLKLQKLFQDKLEAKLAALKAAKQKIEGIQDKDQECAKAKIWTE 118 (160)
T ss_pred HHHHHHHHHHH---------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 37889988864 35 78777 37776654444444444443333333355567788888888788888888
Q ss_pred HhHHHHHHh---hhccCCchhHHHHHHHH
Q 006738 182 ATLFVFRLK---SLKQGQSRSLLTQAARH 207 (633)
Q Consensus 182 aqmc~frLK---sLKqgq~rsLLtqaaRh 207 (633)
|-+.+--+| +.-.|+|..+-+.|+.+
T Consensus 119 ak~~Gv~vk~~~s~~t~~g~~~sk~av~q 147 (160)
T PF03978_consen 119 AKLVGVTVKFSGSNTTGKGDEMSKDAVEQ 147 (160)
T ss_pred HHhcCeeeeecccccCccHHHhHHHHHHH
Confidence 888877666 78889999888877776
No 239
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=29.77 E-value=8.4e+02 Score=27.69 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=25.8
Q ss_pred HHH-HHHHHHHHHHHHHHHHHH---HHHH------HHHHHhhccccCCCCc
Q 006738 124 LLN-ELQTVEEMKRQCDEKRNV---CEYM------LMRQREKGRSKNGKGE 164 (633)
Q Consensus 124 LLk-eLk~VeemKkqcDekr~~---YE~m------~~~~~EKgr~k~~K~e 164 (633)
|++ .|..+|.++++.+++|.- +|.. ..-++||+.++.++.+
T Consensus 369 ~~~~rl~~ie~~~~~l~e~e~~lwffen~~~i~~~~~~~~kkk~~~~~d~e 419 (429)
T PF10037_consen 369 LRKERLEEIEKEDKELYEQEQQLWFFENEDKIQYPKRWQRKKKKREKVDEE 419 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHhhchh
Confidence 344 888999888888887765 2333 1125566666655554
No 240
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=29.54 E-value=9.5e+02 Score=27.95 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=31.2
Q ss_pred HHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHH
Q 006738 169 QQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVK 230 (633)
Q Consensus 169 eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk 230 (633)
++|+.+.-++++--+.|.+-|+-+..-+-.++---+-.++++=..||+..|+.-+.++-+++
T Consensus 461 ~~L~~a~~d~~~i~e~~~~el~~~~~~~~~~l~~~l~~~~~~hie~~~~~Le~W~~v~~~l~ 522 (524)
T COG5391 461 EQLAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEENLEIWKSVKEQLD 522 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444444444555555553333333332222222223335788888887777766654
No 241
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=29.42 E-value=5.3e+02 Score=31.72 Aligned_cols=124 Identities=20% Similarity=0.259 Sum_probs=67.1
Q ss_pred chhhHHHHH--------HH-hHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcc------cCCchh-hhH
Q 006738 27 PLAQLDELA--------QA-SQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTA------LNDNEE-SGK 90 (633)
Q Consensus 27 p~a~ldEl~--------~a-~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta------~~dd~e-~g~ 90 (633)
|+.+|+|+. +- --||.+||.-.| +...+|.-.||..|..+.-+.. .|.|++ .-+
T Consensus 347 P~EKi~~~~~k~l~~l~et~~iDm~Rm~~~i~----------~t~~~yL~nlE~n~~s~fms~ii~d~~ygnedg~~l~~ 416 (1022)
T KOG0961|consen 347 PVEKIDECAPKFLDKLVETANIDMERMGYLID----------QTILNYLVNLETNAPSDFMSHIIGDQLYGNEDGELLKK 416 (1022)
T ss_pred cHHHhhhhhHHHHHHHHHhcccCHHHHHHHHH----------HHHHHHHHhhhcCChHHHHHHHhhhhhccCcchhHHHH
Confidence 666655543 33 235888887665 4567788888888776654411 222222 222
Q ss_pred HHHHHHh-------HHHHHHHHHHHHHH--HhhhhccCCcHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 006738 91 VLLMLGK-------VQFELQKLVDAYRS--HIFQTITIPSESLLNELQTVE--EMKRQCDEKRNVCEYMLMRQREKGRSK 159 (633)
Q Consensus 91 v~l~lgk-------~q~EL~kL~d~yr~--nI~~tIt~PsESLLkeLk~Ve--emKkqcDekr~~YE~m~~~~~EKgr~k 159 (633)
-+.||.- -|+.-++|++.|-. +=+-.|..|++-+..-|+.-| .++++|.+-=+.=--.++.+.|+.|-+
T Consensus 417 ~lk~l~~~~~L~~w~~kdW~~Llnk~Fven~s~tVia~Ps~em~e~i~kE~~~~i~~r~~~lg~~gle~l~k~L~~ak~~ 496 (1022)
T KOG0961|consen 417 RLKELDFLKKLKSWPAKDWVQLLNKYFVENPSATVIAVPSEEMVEKIAKEEEKRIAARCEKLGKKGLEELGKSLEAAKLE 496 (1022)
T ss_pred HHHhHHHHHHHhhccHHHHHHHHHHHhccCCCeEEEecCcHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhhhc
Confidence 3333322 23444555555543 222345679999988665554 788888764444222233344444444
Q ss_pred C
Q 006738 160 N 160 (633)
Q Consensus 160 ~ 160 (633)
|
T Consensus 497 N 497 (1022)
T KOG0961|consen 497 N 497 (1022)
T ss_pred c
Confidence 3
No 242
>PRK00106 hypothetical protein; Provisional
Probab=29.38 E-value=1.1e+02 Score=35.23 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHH-----HHHHHHhhHhhHhHHHHH----HhhhccCCchh
Q 006738 129 QTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQ-----LQEAHDEYDQEATLFVFR----LKSLKQGQSRS 199 (633)
Q Consensus 129 k~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eq-----le~~r~~fqEeaqmc~fr----LKsLKqgq~rs 199 (633)
+.+++.++.++++.+.|+.++. +...+.-+-.||+.+| |++..++...|+...+=. .|+=-.++.+.
T Consensus 132 keLe~reeeLee~~~~~~~~~~----~~~~~Le~~a~lt~~eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~a~~ 207 (535)
T PRK00106 132 QSLTDKSKHIDEREEQVEKLEE----QKKAELERVAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKD 207 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777664 3334666778888865 444455555554444322 23445677888
Q ss_pred HHHHHHHHHHHHH
Q 006738 200 LLTQAARHHAAQL 212 (633)
Q Consensus 200 LLtqaaRhhaAQl 212 (633)
+|.+|+..|++-+
T Consensus 208 ii~~aiqr~a~~~ 220 (535)
T PRK00106 208 LLAQAMQRLAGEY 220 (535)
T ss_pred HHHHHHHHhcchh
Confidence 8888888877643
No 243
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=29.37 E-value=1e+03 Score=28.18 Aligned_cols=136 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhH
Q 006738 100 FELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYD 179 (633)
Q Consensus 100 ~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fq 179 (633)
+-...+|+.++.-|--+=.+=-+..+ ..-.|=++|.|||+-|.+-+. +|+
T Consensus 6 lnm~~~f~~l~r~~~~l~~g~e~ef~----rl~k~fed~~ek~~r~~ae~~--------------------------~~~ 55 (604)
T KOG3564|consen 6 LNMRNLFEQLVRDIEILGEGNEDEFI----RLRKDFEDFEEKWKRTDAELG--------------------------KYK 55 (604)
T ss_pred HHHHHhHHHHHHHHHHhcCccHHHHH----HHHHHHHHHHHHHhhhhHHHH--------------------------HHH
Q ss_pred hhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHhhhhccccccCCCCCCC---------
Q 006738 180 QEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDYQFRGLEDDDM--------- 250 (633)
Q Consensus 180 Eeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae~~hiDy~fSgLedd~~--------- 250 (633)
|++.=-+-.+--|..+ |-+|-+|-.|-+.==|..=--+|++|..|+.|++-+--|...| ++-.|.
T Consensus 56 ~~L~Ka~tk~~~ldvk-----lkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~~~~~~s-~~~~d~~~f~~~~~~ 129 (604)
T KOG3564|consen 56 DLLAKAETKRSALDVK-----LKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLKCDISGS-IQLSDEQKFALAFLN 129 (604)
T ss_pred HHHHHHHHhhhhccch-----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccccc-cccchhhhhhhhccc
Q ss_pred -------CCCCCC--CCCCCCCCCcccccc
Q 006738 251 -------DDGDDD--DNGSDSRGDGELSFD 271 (633)
Q Consensus 251 -------d~~ed~--~d~~d~~ddgeLSFD 271 (633)
...+-- ++.++.+++.++|||
T Consensus 130 ~~~~~S~na~~k~l~~~~~~gs~lSdis~d 159 (604)
T KOG3564|consen 130 RGQPSSSNAGNKRLSEIDESGSILSDISFD 159 (604)
T ss_pred cCCccccccCCccccccCCCccccccCccc
No 244
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=29.23 E-value=6.7e+02 Score=26.43 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 006738 199 SLLTQAARHHAAQLSFVKKAL 219 (633)
Q Consensus 199 sLLtqaaRhhaAQl~fF~~GL 219 (633)
+-|-++...-+.|..||..-|
T Consensus 199 eYll~L~~aN~~q~kYY~~dL 219 (264)
T cd07654 199 DYLLNLAATNAHQDRYYQTDL 219 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 344455555555666665544
No 245
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=29.10 E-value=6.6e+02 Score=25.97 Aligned_cols=78 Identities=23% Similarity=0.248 Sum_probs=41.1
Q ss_pred chhhHHHHH-HHhHhHHHHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHH
Q 006738 27 PLAQLDELA-QASQDMQDMRGCYDSLLSAAAA------TANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQ 99 (633)
Q Consensus 27 p~a~ldEl~-~a~qdm~~Mk~~ydsllsaaaa------~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q 99 (633)
-+..+||.- ....++.++|+++.++--+--- -.+..-.+.-.||+=+.+|++. +-+-+-+.+...-.++.+|
T Consensus 30 ~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq-~rqlEkE~q~L~~~i~~Lq 108 (193)
T PF14662_consen 30 SVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQ-ARQLEKEQQSLVAEIETLQ 108 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444555555 4466688888888877422111 1122334455556656666543 1223455555555666555
Q ss_pred HHHHHH
Q 006738 100 FELQKL 105 (633)
Q Consensus 100 ~EL~kL 105 (633)
-|..+|
T Consensus 109 een~kl 114 (193)
T PF14662_consen 109 EENGKL 114 (193)
T ss_pred HHHhHH
Confidence 555444
No 246
>COG5283 Phage-related tail protein [Function unknown]
Probab=29.01 E-value=1.5e+02 Score=37.40 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=66.8
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCc
Q 006738 118 TIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQS 197 (633)
Q Consensus 118 t~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~ 197 (633)
+.+.|+|-.|+++|-..-++-.+.-+.|..-+. +.|.-++.-.++-+...+|++..+++-| =..|-
T Consensus 70 k~~~~~~kqe~~evn~at~a~~kay~e~~~q~t-qae~~~~sas~q~~~a~~q~~~~~~~iq----~~~~~--------- 135 (1213)
T COG5283 70 KKAYEDLKQEVKEVNRATQASKKAYQEYNAQYT-QAENKLRSLSGQFGVASEQLMLQQKEIQ----RLQYA--------- 135 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhchhhHHHHHHHHHHH----HHHHH---------
Confidence 334556666777777555555555566666666 7888877777777777777776665544 11221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHh
Q 006738 198 RSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAE 234 (633)
Q Consensus 198 rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae 234 (633)
|.++.||-+||.+.|.++=.-++++..-|..+-+
T Consensus 136 ---is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~e 169 (1213)
T COG5283 136 ---ISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRE 169 (1213)
T ss_pred ---HHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHhH
Confidence 4678899999999998887777776666655544
No 247
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=29.00 E-value=4.3e+02 Score=26.05 Aligned_cols=80 Identities=25% Similarity=0.172 Sum_probs=48.5
Q ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHh--hh----
Q 006738 120 PSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLK--SL---- 192 (633)
Q Consensus 120 PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLK--sL---- 192 (633)
+++-||. .=+.+|+.+.++-+.+..|+.--. ..-+|...+.+|. -++-..+.+ +.
T Consensus 6 ~L~~l~dl~~k~~e~a~~el~k~~~~~~~~~~----------------qL~~l~~y~~ey~--q~~~~k~~~G~s~~q~~ 67 (148)
T COG2882 6 ALQKLLDLAKKEEEEAAIELSKIRSEKENAEE----------------QLKMLSGYRNEYE--QNLNEKLKSGVSAAQWQ 67 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHH--HHHHHHHhccccHHHHH
Confidence 4555555 455666888888888777765332 1245556666666 444444443 22
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHH
Q 006738 193 KQGQSRSLLTQAARHHAAQLSFVKK 217 (633)
Q Consensus 193 Kqgq~rsLLtqaaRhhaAQl~fF~~ 217 (633)
.--++.+-|..+|.+|.-++.-+++
T Consensus 68 nyq~fI~~Le~~I~q~~~~~~~~~~ 92 (148)
T COG2882 68 NYQQFISQLEVAIDQQQSQLSKLRK 92 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3336677788888888877776653
No 248
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=28.94 E-value=1.4e+03 Score=29.72 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhH
Q 006738 101 ELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYD 179 (633)
Q Consensus 101 EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fq 179 (633)
.|.+++..|.-.+-++ .-=...+..+++.|..++++.++...+|-+..+ .++..+++.|...+..+|+....+.++
T Consensus 512 ~l~~~~~~~~eele~~-q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~--~~~kl~~~~~e~~~~iq~~~e~~~~~~ 587 (1317)
T KOG0612|consen 512 KLEALVRQLEEELEDA-QKKNDNAADSLEKVNSLRKQLEEAELDMRAESE--DAGKLRKHSKELSKQIQQELEENRDLE 587 (1317)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHH--HHhhHhhhhhhhhHHHHHHhhccccHH
Confidence 3444444444444333 333444555567777777777777777766542 344455666666655555555555555
No 249
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=28.70 E-value=7.5e+02 Score=26.48 Aligned_cols=81 Identities=21% Similarity=0.123 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccCCCCcc-ccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHH
Q 006738 130 TVEEMKRQCDEKRNVCEYMLMRQREKGR--SKNGKGET-FSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAAR 206 (633)
Q Consensus 130 ~VeemKkqcDekr~~YE~m~~~~~EKgr--~k~~K~e~-~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaR 206 (633)
.+.-.||-||+.=.+.|..+ ||.. .| +|+.+ +++-.+++..+-++ +.--++.+|+.+.+ -+-|-.++-
T Consensus 132 EL~KaKK~Y~~~cq~~e~~R----eK~~~e~K-~~~s~~qs~~slqK~~~K~~--~k~~e~n~k~~~AR--NeYLl~L~a 202 (260)
T cd07677 132 DLAKGKKKYFETEQMAHAVR----EKADIEAK-SKLSLFQSRISLQKASVKLK--ARRSECNSKATHAR--NDYLLTLAA 202 (260)
T ss_pred HHHHHHhhhhHHHHHHHHHH----HHHHHHHh-cccccccccchHHHHHHHHH--HHHHHHHHHHHhhh--HHHHHHHHH
Confidence 33446777887666666443 2321 01 22222 34456666666666 66667777776654 355666666
Q ss_pred HHHHHHHHHHHHh
Q 006738 207 HHAAQLSFVKKAL 219 (633)
Q Consensus 207 hhaAQl~fF~~GL 219 (633)
--++|.+||..-|
T Consensus 203 aNa~~~kYY~~DL 215 (260)
T cd07677 203 ANAHQDRYYQTDL 215 (260)
T ss_pred HHHHHHHhhhccH
Confidence 6777777776544
No 250
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=28.20 E-value=8.8e+02 Score=28.39 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006738 130 TVEEMKRQCDEKRNVCEYMLMRQREKG 156 (633)
Q Consensus 130 ~VeemKkqcDekr~~YE~m~~~~~EKg 156 (633)
...+|+++.+-+++.|+.++.++.|=.
T Consensus 377 e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 377 DLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344999999999999999998555443
No 251
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.96 E-value=1.5e+02 Score=31.14 Aligned_cols=57 Identities=21% Similarity=0.308 Sum_probs=42.4
Q ss_pred hhHhHHHHHHhhhc-------cCCchhHHHHHHH------HHHHHHHHHHHHhhhhhccchHHHHHHhhhhc
Q 006738 180 QEATLFVFRLKSLK-------QGQSRSLLTQAAR------HHAAQLSFVKKALKSLEAVDPHVKMVAEQQHI 238 (633)
Q Consensus 180 Eeaqmc~frLKsLK-------qgq~rsLLtqaaR------hhaAQl~fF~~GLKsLE~lephVk~lae~~hi 238 (633)
||.||.+-+|.-|| --|.--|++.+++ ||-||.-+.++ +.|+.+.-||++|-.+.||
T Consensus 4 eE~qlle~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE--~ALk~a~~~i~eLe~ri~~ 73 (233)
T COG3416 4 EEKQLLENLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQE--QALKKASTQIKELEKRIAI 73 (233)
T ss_pred HHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 55666655544443 3455678887765 88999999987 6788889999999998887
No 252
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=27.90 E-value=5.8e+02 Score=29.68 Aligned_cols=76 Identities=16% Similarity=0.085 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-Hhhhhhhh---cccCCchhhhHHHHHHH--hHHHHHHHHHHHHHHHhh
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQE-LGACLLEK---TALNDNEESGKVLLMLG--KVQFELQKLVDAYRSHIF 114 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEalee-mGscll~k---ta~~dd~e~g~v~l~lg--k~q~EL~kL~d~yr~nI~ 114 (633)
+++--...+.++..+..-..+....+..|++ +....|+- ...+||++-+.+|-.|. -....|..|=.+|-.+|.
T Consensus 42 ~~~~d~~ae~~i~~~~~~~~di~~~~~~w~k~y~~~~le~a~p~~~s~ee~Fa~vyH~LiHSpaletLL~LE~~Ya~~vs 121 (510)
T PF10154_consen 42 QKFYDERAESLIEALKNGETDIDDPAKQWEKAYKEETLEFADPEGPSDEEDFAQVYHQLIHSPALETLLQLEHNYAKAVS 121 (510)
T ss_pred HHHHHHHHHHHHHHHhcCCcchhhhhhHHHHHhccccccccCCCCCChhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666555556666666664 33334333 33456677677766643 344556666666666666
Q ss_pred hh
Q 006738 115 QT 116 (633)
Q Consensus 115 ~t 116 (633)
+.
T Consensus 122 el 123 (510)
T PF10154_consen 122 EL 123 (510)
T ss_pred HH
Confidence 55
No 253
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=27.65 E-value=9.4e+02 Score=27.28 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=29.5
Q ss_pred HhhhHHHHHHHHHHHhhhhhhhcccC-CchhhhHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 006738 58 TANSAYEFSESLQELGACLLEKTALN-DNEESGKVLLMLGKVQFELQKLVDAYRSHIFQ 115 (633)
Q Consensus 58 ~~ns~yefsEaleemGscll~kta~~-dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~ 115 (633)
..+-..+..+.+++|++..--+...| +|++-. -..-.+..+++.++..|...+..
T Consensus 25 ~~~~~~~l~~~~~~~~~~~~i~~s~dt~d~~~~---~~~~~~~~~~~p~~~~~~~~~~~ 80 (549)
T TIGR02289 25 WINEENDVNDDIEEMITSAYIRHSVDTDDEEFY---DLEEHFQDEIKPLLKRYNTKFDQ 80 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCHHHH---HHHHHHHHHhCcHHHHHHHHHHH
Confidence 44555666777777877776565555 443222 22333444445555555444444
No 254
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=27.57 E-value=6.4e+02 Score=25.28 Aligned_cols=87 Identities=24% Similarity=0.371 Sum_probs=50.5
Q ss_pred HHHHHHHhHh----HHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHhhhhhhhcc---cCCc-------hhhhHHHH
Q 006738 31 LDELAQASQD----MQDMRGCYDSLLSAAAA---TANSAYEFSESLQELGACLLEKTA---LNDN-------EESGKVLL 93 (633)
Q Consensus 31 ldEl~~a~qd----m~~Mk~~ydsllsaaaa---~~ns~yefsEaleemGscll~kta---~~dd-------~e~g~v~l 93 (633)
|+.++.-++. |.+.-...|+|++-+.+ -+.+-+.|-|-+.+|-.+--.++. .+++ .|.-....
T Consensus 5 i~~il~dak~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~ 84 (181)
T PF05769_consen 5 IEQILADAKRLVERLKDHDNAADSLLSQAEALNKQIESMRQYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQ 84 (181)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHH
Confidence 4445544443 44444567777776655 344555666666665332211100 0122 34455567
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhc
Q 006738 94 MLGKVQFELQKLVDAYRSHIFQTI 117 (633)
Q Consensus 94 ~lgk~q~EL~kL~d~yr~nI~~tI 117 (633)
.|...|.-|.-.+..||.|+...+
T Consensus 85 ~leEhq~alelIM~KyReq~~~l~ 108 (181)
T PF05769_consen 85 SLEEHQSALELIMSKYREQMSQLM 108 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888889999999988663
No 255
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=27.49 E-value=7.5e+02 Score=27.75 Aligned_cols=146 Identities=17% Similarity=0.134 Sum_probs=77.1
Q ss_pred hhhHHHHHHHhHhHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHH-HHHHhHHHHH
Q 006738 28 LAQLDELAQASQDMQDMRGCYDSLLSAAAA----TANSAYEFSESLQELGACLLEKTALNDNEESGKVL-LMLGKVQFEL 102 (633)
Q Consensus 28 ~a~ldEl~~a~qdm~~Mk~~ydsllsaaaa----~~ns~yefsEaleemGscll~kta~~dd~e~g~v~-l~lgk~q~EL 102 (633)
...|+++-++-+.+++.+..|+..+.-|-. ..+.+..-.+ ++-..+++. + +.+..+.. -.-..++.|=
T Consensus 38 ~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~---~~~~~~~~~-A---~~ea~~i~~~a~~~Ie~ek 110 (445)
T PRK13428 38 RQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAE---RIAEQLRAQ-A---DAEAERIKVQGARQVQLLR 110 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-H---HHHHHHHHHHHHHHHHHHH
Confidence 345666666666688888888888877543 2222222222 222222222 1 22332222 2234566777
Q ss_pred HHHHHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHh
Q 006738 103 QKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQ 180 (633)
Q Consensus 103 ~kL~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqE 180 (633)
++.+..++..|.+...-=.+-+|+ +|..-++=++-+|+.-+.-+.|=..--+-...-.+|..+-+||-|...++.|.+
T Consensus 111 ~~a~~elr~ei~~lAv~~A~kil~~~l~d~~~~~~lId~~i~~l~~~~~~~~~~~~~~~~~m~~~sr~~~~~~~~~~~~ 189 (445)
T PRK13428 111 AQLTRQLRLELGHESVRQAGELVRNHVADPAQQSATVDRFLDELDAMAPSTADVDYPLLAKMRSASRRALASLVDRFDS 189 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccCCCchhhcCchhhhhhHhhHHHHHHHHHHHHH
Confidence 788888888888886555555555 343222223333333333222211011122334466777788888888777773
No 256
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=27.46 E-value=4.4e+02 Score=23.38 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=33.6
Q ss_pred HHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 109 YRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 109 yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~ 150 (633)
++.-|.+.|.-=.+.+.+++...++++++.++..+.|+..+.
T Consensus 20 ~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~ 61 (132)
T PF00430_consen 20 LYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLA 61 (132)
T ss_dssp THHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777788888999999999999999999999987
No 257
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=27.45 E-value=6.4e+02 Score=27.05 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhh
Q 006738 128 LQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSL 192 (633)
Q Consensus 128 Lk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsL 192 (633)
.+.++.|+++|+.-..+= .-+..+|||.|.+.-...- =.+-||+.|=-|.+|-.-|+..|+.|
T Consensus 175 ~~~~~~~~~~l~~l~~de-~~Le~KIekkk~ELER~qK-RL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 175 QQQLQQTQQQLNNLASDE-ANLEAKIEKKKQELERNQK-RLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 455668888888766663 3344577877765432221 12778888888999988998888754
No 258
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=27.32 E-value=7.4e+02 Score=27.26 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 006738 128 LQTVEEMKRQCDEKRNVCEYMLMRQREKGRSK 159 (633)
Q Consensus 128 Lk~VeemKkqcDekr~~YE~m~~~~~EKgr~k 159 (633)
.....+|.++.+-+|..||.++.++.|=.-.+
T Consensus 372 ~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 372 QVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445899999999999999998665544333
No 259
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=27.30 E-value=1.4e+02 Score=30.75 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=42.0
Q ss_pred HHHHHHHHH------HHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 006738 102 LQKLVDAYR------SHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKG 163 (633)
Q Consensus 102 L~kL~d~yr------~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~ 163 (633)
||.|||.=. -++|---+||++.+-|---..+.++++||+--.+--+... .|++++++..|-
T Consensus 49 lQqlVDDgvV~~EK~GtsN~YWsF~s~~~qk~~~~~~~l~~~~~~~kqdi~t~~e-~i~~ek~~r~k~ 115 (209)
T COG5124 49 LQQLVDDGVVSVEKCGTSNIYWSFKSQTLQKLYDSSELLKKKIQEVKQDIATYKE-EIDKEKATRRKK 115 (209)
T ss_pred HHHHhhcCceeeeeeccceeEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHhhhcc
Confidence 677776321 1233345799999988434567999999998888777654 888888655443
No 260
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=27.13 E-value=3.6e+02 Score=22.23 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcc-cCCchhhhHHHHHHHhHHHHHHHHHHHHHHHh
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTA-LNDNEESGKVLLMLGKVQFELQKLVDAYRSHI 113 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta-~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI 113 (633)
+++|.+.++- -+.-+.+|+..|+++......+.. ..+..-+..++..+-....++.+..-++..+|
T Consensus 25 ~~~l~~~~ke-------Ra~lE~~Yak~L~kl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~a~~h~~~a~~L 91 (91)
T PF00611_consen 25 LEELASFFKE-------RASLEEEYAKSLQKLAKKFKKKMKSSQEYGTLKNAWDSLLEETEQIAEQHSKLAENL 91 (91)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6666666554 456688999999999999986543 22345566666666666666666555555543
No 261
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=27.10 E-value=4.8e+02 Score=23.71 Aligned_cols=85 Identities=12% Similarity=0.166 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccCCCCc
Q 006738 86 EESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDE-KRNVCEYMLMRQREKGRSKNGKGE 164 (633)
Q Consensus 86 ~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDe-kr~~YE~m~~~~~EKgr~k~~K~e 164 (633)
.+....+-...+.-.+..+.++.|+...... -.|-.-.+++...|+. -.+..+.++. ..+.|. ...-.
T Consensus 78 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~l~~~~~-al~~~d--~~~~~ 146 (171)
T PF02203_consen 78 PDAAELLARAEQNLEQAEQAFDAFKALPHAS--------PEERALADELEASFDAYLQQALDPLLA-ALRAGD--IAAFM 146 (171)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHCS---G--------TGGHHHHHHHHHHHHH-HHHHHHHHHH-HHHTT---HHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHccCCCC--------cchHHHHHHHHHHHHHHHHHhHHHHHH-HHHCCC--HHHHH
Confidence 4455666666666666666777776544311 0123344566677777 4444566665 444431 11111
Q ss_pred cccHHHHHHHHHhhHhh
Q 006738 165 TFSLQQLQEAHDEYDQE 181 (633)
Q Consensus 165 ~~i~eqle~~r~~fqEe 181 (633)
.+-.++++..++.|++.
T Consensus 147 ~~~~~~~~~~~~~~~~~ 163 (171)
T PF02203_consen 147 QLPNEKIQPLFDAFTAA 163 (171)
T ss_dssp HSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhHHHHHHH
Confidence 23347777777777743
No 262
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.07 E-value=6.5e+02 Score=26.77 Aligned_cols=20 Identities=40% Similarity=0.371 Sum_probs=16.7
Q ss_pred cHHHHHHHHHhhHhhHhHHHHH
Q 006738 167 SLQQLQEAHDEYDQEATLFVFR 188 (633)
Q Consensus 167 i~eqle~~r~~fqEeaqmc~fr 188 (633)
-..++.++|-+|- ++|+.+.
T Consensus 188 ~~~k~~~arNeYl--l~L~aaN 207 (263)
T cd07678 188 YSQQLQAARNEYL--LNLVAAN 207 (263)
T ss_pred HHHHHHHHHHHHH--HHHHHHH
Confidence 3478899999999 9998874
No 263
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=26.90 E-value=3e+02 Score=29.72 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHH---Hh---hhccC
Q 006738 122 ESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFR---LK---SLKQG 195 (633)
Q Consensus 122 ESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~fr---LK---sLKqg 195 (633)
..|+.+|+.+-+|.+..|++.-.+|-+.. ||+=.=..- -..|++-....| +||..+ || +|.+.
T Consensus 47 ~~l~s~L~QIt~iQaeI~q~nlEielLkl---eKeTADltH-----~~~L~~K~~~Lq---~m~shLe~VLk~K~~Lr~R 115 (277)
T PF15003_consen 47 SDLFSRLRQITNIQAEIDQLNLEIELLKL---EKETADLTH-----PDYLAEKCEALQ---SMNSHLEAVLKEKDRLRQR 115 (277)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHh---hcchHhhhC-----HHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHH
Confidence 34666788888999999998888887654 654322111 134444444444 344332 33 22222
Q ss_pred ----CchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHhhhhccccc
Q 006738 196 ----QSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDYQF 242 (633)
Q Consensus 196 ----q~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~lae~~hiDy~f 242 (633)
-..+-|.=-|.||.-=-.||.....++++|+-|++.|.--.|+|-..
T Consensus 116 LqkP~~qe~LPVEA~yHr~vVeLL~laa~fi~~Le~~LetIrwip~~~~~~ 166 (277)
T PF15003_consen 116 LQKPYCQENLPVEAQYHRYVVELLELAASFIEKLEEHLETIRWIPNFDENP 166 (277)
T ss_pred HHhhhhhcCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccH
Confidence 33334444566777777899999999999999999888777665433
No 264
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=26.84 E-value=1.2e+02 Score=36.93 Aligned_cols=51 Identities=24% Similarity=0.463 Sum_probs=27.2
Q ss_pred CchhHHHHHHHHHHHHHHHHH--HHhhhhhccchHHHHHHhhhhccccccCCCCCCCCCCCC
Q 006738 196 QSRSLLTQAARHHAAQLSFVK--KALKSLEAVDPHVKMVAEQQHIDYQFRGLEDDDMDDGDD 255 (633)
Q Consensus 196 q~rsLLtqaaRhhaAQl~fF~--~GLKsLE~lephVk~lae~~hiDy~fSgLedd~~d~~ed 255 (633)
+.-+||+-+-+.-.-=.+|+. ++++-|-++|-|+=. .|.|++||+.|.+||
T Consensus 846 ~~~n~l~~~~k~~~L~~~Fi~~~~~~n~lt~le~~l~~---------~f~~~~~~d~dE~e~ 898 (911)
T PF05086_consen 846 KEKNLLRKQDKCEKLKKNFISKLKELNKLTKLEEYLIS---------QFQSNGDEDTDEDED 898 (911)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH---------HHHhcCCcccccccc
Confidence 444455544444444444544 345555566555433 237777777766664
No 265
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=26.61 E-value=4e+02 Score=25.78 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHhhhhhhhcccC
Q 006738 43 DMRGCYDSLLSAAAATANS--AYEFSESLQELGACLLEKTALN 83 (633)
Q Consensus 43 ~Mk~~ydsllsaaaa~~ns--~yefsEaleemGscll~kta~~ 83 (633)
++...|..++...+..... .+.|.++|++--..+...+.++
T Consensus 61 ~~~~~~~~~f~~~a~~L~~~~~~~~~~~w~~~~~~~~~~~~L~ 103 (170)
T PF09548_consen 61 RSEGPIGEFFERVAERLEKNEGESFAEAWEEAVEKLLKESALK 103 (170)
T ss_pred cccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhcCCCC
Confidence 4567777777776664333 3588999988777776667776
No 266
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=26.44 E-value=3.3e+02 Score=25.28 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 121 SESLLNELQTVEEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 121 sESLLkeLk~VeemKkqcDekr~~YE~m~~ 150 (633)
-+.+.++|...++++.+-.+..+.|+..+.
T Consensus 37 ~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~ 66 (156)
T PRK05759 37 QKKIADGLAAAERAKKELELAQAKYEAQLA 66 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455688999999999999999999886
No 267
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=26.08 E-value=3.3e+02 Score=27.75 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHh
Q 006738 98 VQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDE 177 (633)
Q Consensus 98 ~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~ 177 (633)
.+..|+.|+|+.++.|+.-.--=.+.+|.+- ++.=+.++. +.+.+-.+.-.-.+++.+.++..
T Consensus 6 ~~~k~q~L~dki~~eiL~eA~~eA~~Il~eA-------------k~~Ae~Ii~----eA~~EAe~ii~~A~~eae~ek~r 68 (207)
T PRK01005 6 AQDKLKQICDALREETLKPAEEEAGAIVHNA-------------KEQAKRIIA----EAQEEAEKIIRSAEETADQKLKQ 68 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999998877665333333333322 222122221 11111111111223555666666
Q ss_pred hHhhHhHHHHHHh-hhccC----CchhHHHHHHHHHHHHHHHHHH
Q 006738 178 YDQEATLFVFRLK-SLKQG----QSRSLLTQAARHHAAQLSFVKK 217 (633)
Q Consensus 178 fqEeaqmc~frLK-sLKqg----q~rsLLtqaaRhhaAQl~fF~~ 217 (633)
.+..+.|..-+.. ++||. -+...+..++..+.+--.|.++
T Consensus 69 ~~s~a~l~~R~~~l~aKqevi~~vf~~a~~~lv~~~~~d~~~l~~ 113 (207)
T PRK01005 69 GESALVQAGKRSLESLKQAVENKIFRESLGEWLEHVLTDPEVSAK 113 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6655666555543 55554 4666677777777777777666
No 268
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=26.07 E-value=6.9e+02 Score=25.58 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=37.9
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 86 EESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 86 ~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~ 150 (633)
+++-.++-.|...+.|+..+|....+..+..+..-.+.+. .-+...+.++..|+ |..++.
T Consensus 185 ~~~~~~~~~L~~~~~e~~~~l~~~~~~fv~~l~~~~~~~~----~~~~~~~~~~~~W~-~~~~~g 244 (253)
T PF09090_consen 185 EELESLEEKLERALEEQKNLLLLIFQRFVMVLVIESEHLV----ECEQDLRDWDTRWL-FRWYVG 244 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHT--SS-HH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc----chhhhhHHhccCcH-HHHHHH
Confidence 5566788888888999888888888777777533334333 33355577899998 777665
No 269
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=25.92 E-value=6.5e+02 Score=24.83 Aligned_cols=99 Identities=21% Similarity=0.231 Sum_probs=56.8
Q ss_pred HHH-HHHH---HHHHHHHHHHHHHHHHHhhccccC---CCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHH
Q 006738 130 TVE-EMKR---QCDEKRNVCEYMLMRQREKGRSKN---GKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLT 202 (633)
Q Consensus 130 ~Ve-emKk---qcDekr~~YE~m~~~~~EKgr~k~---~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLt 202 (633)
.++ ++|+ .+|+.|+..-.+|..-.|+=|..+ .+...-.++.|+.....--.|.+=..=.|++=-.|-.-. |+
T Consensus 49 ~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e~-l~ 127 (155)
T PF07464_consen 49 SLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGANEK-LQ 127 (155)
T ss_dssp HHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-GG-GH
T ss_pred HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HH
Confidence 344 7787 889999999999887777666532 344444557777766666666665555555322222222 23
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccchHHHHHHhh
Q 006738 203 QAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQ 235 (633)
Q Consensus 203 qaaRhhaAQl~fF~~GLKsLE~lephVk~lae~ 235 (633)
-+++ .++-...+.++.|.-.|...+..
T Consensus 128 ~~~K------~~~D~~~k~~~~~~~~l~~a~~~ 154 (155)
T PF07464_consen 128 PAIK------QAYDDAVKAAQKVQKQLHEAASK 154 (155)
T ss_dssp HHHH------HHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHhccC
Confidence 3322 23444566777777777666654
No 270
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=25.84 E-value=3.5e+02 Score=24.71 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 126 NELQTVEEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 126 keLk~VeemKkqcDekr~~YE~m~~ 150 (633)
++|...++++.+.++....|+..+.
T Consensus 43 ~~l~~Ae~~~~ea~~~~~~~e~~L~ 67 (140)
T PRK07353 43 TNRAEAKERLAEAEKLEAQYEQQLA 67 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999986
No 271
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.73 E-value=8.1e+02 Score=25.88 Aligned_cols=46 Identities=7% Similarity=-0.025 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 100 FELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYML 149 (633)
Q Consensus 100 ~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~ 149 (633)
.||....++.. +-...+.-++++.+++|. --|+-||+.+++=|.-+
T Consensus 102 ~~l~~~rk~~~-~~~~klqk~l~~~~~~le---ksKk~Y~~acke~E~A~ 147 (252)
T cd07675 102 HDLKGERKMHL-QEGRKAQQYLDMCWKQMD---NSKKKFERECREAEKAQ 147 (252)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 44444433332 222333345566666554 45677776666666544
No 272
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.59 E-value=7.5e+02 Score=25.41 Aligned_cols=124 Identities=19% Similarity=0.290 Sum_probs=65.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhh-ccc-CCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 006738 38 SQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEK-TAL-NDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQ 115 (633)
Q Consensus 38 ~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~k-ta~-~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~ 115 (633)
+.-|.+||..|+.++...-.-+...|.- -++++-.-.-.. .++ .-..++-..-..+...+.||..|-.
T Consensus 168 ~~~L~eiR~~ye~~~~~~~~e~e~~y~~--k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~-------- 237 (312)
T PF00038_consen 168 SAALREIRAQYEEIAQKNREELEEWYQS--KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRA-------- 237 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred hhhhhhHHHHHHHHHhhhhhhhhhhccc--ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhcccc--------
Confidence 3447888999998887766555554432 233332221100 000 0022333333333333333333211
Q ss_pred hccCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHh
Q 006738 116 TITIPSESLLNEL-QTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLK 190 (633)
Q Consensus 116 tIt~PsESLLkeL-k~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLK 190 (633)
....| +.+.+++.+++..++.|...++ .+|.+-.+ .+.+|+.-.++||+ ||.-.+.
T Consensus 238 --------~~~~Le~~l~~le~~~~~~~~~~~~~i~-~le~el~~-------l~~~~~~~~~ey~~---Ll~~K~~ 294 (312)
T PF00038_consen 238 --------KNASLERQLRELEQRLDEEREEYQAEIA-ELEEELAE-------LREEMARQLREYQE---LLDVKLA 294 (312)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHH---HHHHHHH
T ss_pred --------chhhhhhhHHHHHHHHHHHHHHHHHhhh-ccchhHHH-------HHHHHHHHHHHHHH---HHHHHHh
Confidence 11112 2456888999999999999987 55544332 45788888888883 4444443
No 273
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.53 E-value=5.7e+02 Score=27.54 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH--------HhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhc
Q 006738 46 GCYDSLLSAAAATANSAYEFSESLQE--------LGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTI 117 (633)
Q Consensus 46 ~~ydsllsaaaa~~ns~yefsEalee--------mGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tI 117 (633)
+|+-.||+---+.+..--.|++.+.. |+.+. .+....--++.-..--.|-+|+-||+.-+++| |+-++=
T Consensus 72 ~~W~~lL~QT~~~Skdh~~LSd~y~~~~~~rl~~~~ed~-~Ri~KksKEi~~q~~eeLlkV~~ELqt~mktY--h~y~~e 148 (263)
T cd07682 72 NCWNLLLNQVKRESRDHATLSDIYLNNIIPRFVQISEDS-GRLFKKSKEVGLQLQEDLMKVLNELYTVMKTY--HMYNAD 148 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q ss_pred cCCcHHHHH--HHHHHHHH---------------------------------HHH-----------------HHHHHHHH
Q 006738 118 TIPSESLLN--ELQTVEEM---------------------------------KRQ-----------------CDEKRNVC 145 (633)
Q Consensus 118 t~PsESLLk--eLk~Veem---------------------------------Kkq-----------------cDekr~~Y 145 (633)
+.-.|+-|+ |-+.-+-| |+. |-++|++|
T Consensus 149 ~~~ae~Klk~aE~q~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rrs~~kk~~r~~ekrq~Ky~e~kLK~~KARNeY 228 (263)
T cd07682 149 SISAQSKLKEAEKQEEKQMSRSVRQEDRQTPRSPDSTTNIRIEEKHVRRSSVKKIEKMKEKRQAKYTENKLKAIKARNEY 228 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 274
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.33 E-value=1.5e+03 Score=28.85 Aligned_cols=47 Identities=9% Similarity=0.078 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhH
Q 006738 133 EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYD 179 (633)
Q Consensus 133 emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fq 179 (633)
+|++.|+...++-..+++-..|+.-.=..+.-+++.-.|+..+.--+
T Consensus 751 ~~~~~~~~~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~~~~~~~~~~ 797 (1041)
T KOG0243|consen 751 SFQKKFESIAEDEKQLVEDIKELLSSHDQRNNELLDIALQTLRSAVN 797 (1041)
T ss_pred HHhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77787877555555666655666655555555555555555554333
No 275
>KOG3270 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.14 E-value=67 Score=33.89 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHH
Q 006738 46 GCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLL 125 (633)
Q Consensus 46 ~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLL 125 (633)
|.|+=.++.+++++.+.+..-+---=|-.++|+++-.+|+...|.+=-.+.+.+-+ +-|+-++.++..-
T Consensus 21 ~~~~p~y~ps~~~s~~~~q~q~~~~~~~~~~lk~i~~d~~~~~~~~~~~~~~L~~~--~sv~El~~l~a~r--------- 89 (244)
T KOG3270|consen 21 NSQDPWYSPSLATSRSLAQPQATSSGQISALLKSIIVDDQQSPGEADGLLALLKDK--KSVDELNELLAER--------- 89 (244)
T ss_pred cccCCCcChhhhhchhhcccccccchhhhhhhhccccccccCccchhhHHHHhhhh--hhhHHHHHhhhhh---------
Confidence 34455666777788877777664455677888888777877778777777776666 5555555444421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006738 126 NELQTVEEMKRQCDEKRNVCEY 147 (633)
Q Consensus 126 keLk~VeemKkqcDekr~~YE~ 147 (633)
..|++.||++-+..|-.
T Consensus 90 -----~~d~~~Q~i~lldQv~~ 106 (244)
T KOG3270|consen 90 -----DKDAEEQFIELLDQVQK 106 (244)
T ss_pred -----chhhhHHHHHHHHHHHH
Confidence 23555555555555443
No 276
>PF15294 Leu_zip: Leucine zipper
Probab=24.81 E-value=9.1e+02 Score=26.16 Aligned_cols=130 Identities=20% Similarity=0.241 Sum_probs=76.4
Q ss_pred HHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHH-----HHHHHHHHHHHH
Q 006738 67 ESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQ-----TVEEMKRQCDEK 141 (633)
Q Consensus 67 EaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk-----~VeemKkqcDek 141 (633)
.-|.+.-+||- +--..-|...-..+.|+..+||.+..+|-..+ |+ ||+ .|-.|++-|..+
T Consensus 8 ~~Lk~Vds~F~--------Dlk~srL~e~t~T~~EV~~~ldgL~~~v~~~v----es---EL~N~~htn~lllrql~~qA 72 (278)
T PF15294_consen 8 QHLKEVDSCFQ--------DLKSSRLREDTYTSDEVTEMLDGLQVVVKSEV----ES---ELINTSHTNVLLLRQLFSQA 72 (278)
T ss_pred HHHHHHHHhhh--------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----HH---HHHhHHHhHHHHHHHHHHHH
Confidence 34555566662 33344555677788899999998888776531 11 222 223566666655
Q ss_pred HHHHHHHHHHHHhhccccCCCCcccc-HHHHHHHHHhhHhhHhHHHH-----------HHhhhccCCchhHHHHHHHHHH
Q 006738 142 RNVCEYMLMRQREKGRSKNGKGETFS-LQQLQEAHDEYDQEATLFVF-----------RLKSLKQGQSRSLLTQAARHHA 209 (633)
Q Consensus 142 r~~YE~m~~~~~EKgr~k~~K~e~~i-~eqle~~r~~fqEeaqmc~f-----------rLKsLKqgq~rsLLtqaaRhha 209 (633)
.+-| .++ ..+-+-. -++|=+....|. -+.+.- +|..|+.+-+.-||+--|+--.
T Consensus 73 ek~~-lkl-----------~~diselEn~eLLe~i~~~E--~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq 138 (278)
T PF15294_consen 73 EKWY-LKL-----------QTDISELENRELLEQIAEFE--KQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQ 138 (278)
T ss_pred HHHH-HHh-----------cccHHHHHHHHHHHHHHHHH--HhhhcccCCccccccccccccccccchHHHHHHHHHHHH
Confidence 5554 111 1111111 144555555665 232222 2667877777788888888888
Q ss_pred HHHHHHHHHhhhhhcc
Q 006738 210 AQLSFVKKALKSLEAV 225 (633)
Q Consensus 210 AQl~fF~~GLKsLE~l 225 (633)
+.+.=-+.-|+++|..
T Consensus 139 ~EN~kLk~rl~~le~~ 154 (278)
T PF15294_consen 139 EENEKLKERLKSLEKQ 154 (278)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888754
No 277
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=24.79 E-value=8.1e+02 Score=25.55 Aligned_cols=117 Identities=16% Similarity=0.221 Sum_probs=60.4
Q ss_pred HHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 006738 71 ELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN----ELQTVEEMKRQCDEKRNVCE 146 (633)
Q Consensus 71 emGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk----eLk~VeemKkqcDekr~~YE 146 (633)
.+|.||+ ..|.++-.+|.++.++-..++ +|++.-|..-++.-+| +.|.++--.=-||-+++-+.
T Consensus 85 ~~G~aL~---------~~G~A~~kla~~~~~~~~~i~---~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~~ 152 (223)
T cd07613 85 NFGPALG---------DVGEAMRELSEVKDSLDMEVK---QNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQG 152 (223)
T ss_pred hHHHHHH---------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCC
Confidence 3667774 578888888888877654443 3444444444555544 55666644445555555443
Q ss_pred HHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCc-hhHHHHHHHHHHHHHH
Q 006738 147 YMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQS-RSLLTQAARHHAAQLS 213 (633)
Q Consensus 147 ~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~-rsLLtqaaRhhaAQl~ 213 (633)
.- . .-|= .....+.+...+... .-|..|+..+..+-+. ..|+.--+. ||.||.
T Consensus 153 k~-~-eeEl---------r~A~~kFees~E~a~--~~M~n~l~~e~e~~~~L~~fveAQl~-Yh~qa~ 206 (223)
T cd07613 153 KI-P-DEEL---------RQALEKFDESKEIAE--SSMFNLLEMDIEQVSQLSALVQAQLE-YHKQAT 206 (223)
T ss_pred CC-c-HHHH---------HHHHHHHHHHHHHHH--HHHHHHHHcCchHHHHHHHHHHHHHH-HHHHHH
Confidence 21 1 0000 001234445555444 5577777776655543 334443344 445554
No 278
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=24.52 E-value=7.1e+02 Score=24.82 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=47.2
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHH
Q 006738 32 DELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRS 111 (633)
Q Consensus 32 dEl~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~ 111 (633)
+..++.++.-..+...+..|-.++.+......++...+.+|.++.-.+.=.+|+-.-|+.| ..+|.+.++.|..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~lD~~a~~l~~~l~~l~~~~~e~~~Yy~~k~Y~~D~~ak~kel------h~~l~~~~~~~~~ 128 (276)
T PF12889_consen 55 KDCLEKLKKAAANKPAMPELDAAAKELLPALKELYPLINELDSYYDSKDYKDDNFAKAKEL------HAKLLAAYEEFKA 128 (276)
T ss_dssp -SHHHHCS--TS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHTT-HHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCchhHHHHHH------HHHHHHHHHHHHH
Confidence 3333333333445566667777777777778888999999999986665566777777766 5667777777766
Q ss_pred Hhhh
Q 006738 112 HIFQ 115 (633)
Q Consensus 112 nI~~ 115 (633)
.+..
T Consensus 129 a~~~ 132 (276)
T PF12889_consen 129 AYDA 132 (276)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 279
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=24.47 E-value=3.1e+02 Score=32.62 Aligned_cols=102 Identities=18% Similarity=0.263 Sum_probs=65.6
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc
Q 006738 88 SGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFS 167 (633)
Q Consensus 88 ~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i 167 (633)
..+-|+. .+.|+..++..|+......... |++.+..|=.||.+. +++-+ |++...|.+
T Consensus 182 ~~sPF~a---l~~e~~~~~~~~~~~~~~~~~~-------d~~~l~vll~qCr~~-----------v~~v~-~~~~~~G~S 239 (643)
T PF10136_consen 182 RDSPFVA---LQREVEAFLEAYRQQDEDPDSE-------DLKHLRVLLDQCREQ-----------VDRVR-KHLEKYGVS 239 (643)
T ss_pred cCCCHHH---HHHHHHHHHHHHhhcccccccc-------cHHHHHHHHHHHHHH-----------HHHHH-HhccccCee
Confidence 3444544 5889999999998877654222 888888999999653 22222 223333544
Q ss_pred H------HHHHHHHHhhHhhHhHHHHHH--hhhccCCchhHHHHHHHHHHHHHHH
Q 006738 168 L------QQLQEAHDEYDQEATLFVFRL--KSLKQGQSRSLLTQAARHHAAQLSF 214 (633)
Q Consensus 168 ~------eqle~~r~~fqEeaqmc~frL--KsLKqgq~rsLLtqaaRhhaAQl~f 214 (633)
- |+|++..+--+ .|...+. ..-+..+...|+.++++.++.|.+.
T Consensus 240 v~l~~~L~Rl~Q~L~Ri~---~Ll~~l~~~~~~~~~~~~~L~~~Lv~~~~~r~si 291 (643)
T PF10136_consen 240 VSLVFLLERLRQQLDRIE---LLLDLLVDDSPDRRRAIVRLFKELVRAECRRNSI 291 (643)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHcccCchhhHHHHHHHHHHHHHHHHhccH
Confidence 4 45544443333 4444444 4777788889999999999988763
No 280
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=24.27 E-value=4.7e+02 Score=25.15 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 121 SESLLNELQTVEEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 121 sESLLkeLk~VeemKkqcDekr~~YE~m~~ 150 (633)
=+.+.++|...++.+++-++....|+.++.
T Consensus 52 ~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~ 81 (174)
T PRK07352 52 REAILQALKEAEERLRQAAQALAEAQQKLA 81 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455688999999999999999999987
No 281
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=24.07 E-value=1.9e+02 Score=23.42 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=34.6
Q ss_pred cccHHHHHHHHH--hhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHH
Q 006738 165 TFSLQQLQEAHD--EYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKM 231 (633)
Q Consensus 165 ~~i~eqle~~r~--~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~ 231 (633)
....+.++.-.+ .|..|+-+|.+..=-.+-+.....+...++ +++++|++++|.++-+.|+
T Consensus 15 ~~e~~~l~~~~~~~~~~~~~v~~ai~~~~~~~~~~~~Yi~~Il~------~W~~~gi~t~e~~~~~~k~ 77 (77)
T PF07261_consen 15 PSEIEKLEKWIDDYGFSPEVVNEAIEYALENNKRSFNYIEKILN------NWKQKGIKTVEDAEEYEKQ 77 (77)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCT--SHHHHHHHHH------HHHHCT--SCCCCT-----
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH------HHHHcCCCCHHHHHHHhhC
Confidence 344578888888 677555555555444434445566665554 6788999999999988763
No 282
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=24.07 E-value=8.5e+02 Score=25.52 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhhhh-hcccCCchhhhHHHHHHHhHHHHHHHHHH---HHHHHhhhhccCCcHHHHHHHHHHH
Q 006738 64 EFSESLQELGACLLE-KTALNDNEESGKVLLMLGKVQFELQKLVD---AYRSHIFQTITIPSESLLNELQTVE 132 (633)
Q Consensus 64 efsEaleemGscll~-kta~~dd~e~g~v~l~lgk~q~EL~kL~d---~yr~nI~~tIt~PsESLLkeLk~Ve 132 (633)
...+++++++..=+. +......+|+|...-.|-.+..+|.+... .+..++.+-+..|+..+...+....
T Consensus 194 ~l~~~~~~i~~gdl~~~~~~~~~dE~~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~ 266 (466)
T PRK10549 194 RLVEGTHKLAAGDFTTRVTPTSRDELGRLAQDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQ 266 (466)
T ss_pred HHHHHHHHHhCCCCCccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHH
Confidence 445566666553322 22233567888887777777777766544 3456677888889888766555544
No 283
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=23.98 E-value=9.2e+02 Score=25.89 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHh--------HHHHHHHHHHHHHHH
Q 006738 41 MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGK--------VQFELQKLVDAYRSH 112 (633)
Q Consensus 41 m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk--------~q~EL~kL~d~yr~n 112 (633)
+..+|.+++-|...- .....+.+.|.+. .++|+++...++..++ |..||.| ||-|..-
T Consensus 200 i~~L~~ll~~l~~lk----~eR~~~~~~Lk~k---------~~~DDI~~~ll~~~~~~~~~~e~lF~~eL~k-f~p~~~~ 265 (356)
T cd09237 200 IKQLEELLEDLNLIK----EERQRVLKDLKQK---------IHNDDISDILILNSKSKSEIEKQLFPEELEK-FKPLQNR 265 (356)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHH---------HhccchHHHHHHhcccccchHHHHHHHHHHH-cchHHHH
Confidence 455555555554443 3344455555442 3445666666655543 5669987 9999888
Q ss_pred hhhhccCCcHHHHHHHHHH
Q 006738 113 IFQTITIPSESLLNELQTV 131 (633)
Q Consensus 113 I~~tIt~PsESLLkeLk~V 131 (633)
|-.+|.- =+.||+||+..
T Consensus 266 l~~~~~~-Q~~ll~el~~~ 283 (356)
T cd09237 266 LEATIFK-QSSLINELKIE 283 (356)
T ss_pred HHHHHHH-HHHHHHHHHHH
Confidence 8777544 34555555543
No 284
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=23.97 E-value=1.1e+03 Score=27.15 Aligned_cols=107 Identities=24% Similarity=0.373 Sum_probs=67.0
Q ss_pred hhHHHHHHHh-HhHHHHHHHHHHHHHHHHHHhhhHHHH-HHH-HHHHhhhhhhh-cccCCch-hhhHHH-HHHHhHHHHH
Q 006738 29 AQLDELAQAS-QDMQDMRGCYDSLLSAAAATANSAYEF-SES-LQELGACLLEK-TALNDNE-ESGKVL-LMLGKVQFEL 102 (633)
Q Consensus 29 a~ldEl~~a~-qdm~~Mk~~ydsllsaaaa~~ns~yef-sEa-leemGscll~k-ta~~dd~-e~g~v~-l~lgk~q~EL 102 (633)
..|++|-+.- +.|+++|.--|.||+--.|.+-|+-|- -.| -|||---| +| ..+|-|. -.-+-+ -.|-.+|+||
T Consensus 352 kkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeREL-eKsqSvnsdveaLRrQyleelqsvqREL 430 (593)
T KOG4807|consen 352 KKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMEREL-EKSQSVNSDVEALRRQYLEELQSVQREL 430 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HhhhccccChHHHHHHHHHHHHHHHHHH
Confidence 3577777664 459999999999998766555444321 111 14565555 45 4455333 333333 4688899999
Q ss_pred HHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 006738 103 QKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEK 141 (633)
Q Consensus 103 ~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDek 141 (633)
+-|-..|-+.-+.+ --|..-|..-+..-+||..-
T Consensus 431 eVLSEQYSQKCLEn-----ahLaqalEaerqaLRqCQrE 464 (593)
T KOG4807|consen 431 EVLSEQYSQKCLEN-----AHLAQALEAERQALRQCQRE 464 (593)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 99999999887766 22333444444566777643
No 285
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=23.56 E-value=5.9e+02 Score=27.02 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHh
Q 006738 34 LAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHI 113 (633)
Q Consensus 34 l~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI 113 (633)
++..+-.|++||+.....-..--..+..+|-.-=||+=|..|+-+-.+.+-+-...+.|+.-+.|
T Consensus 46 ~~~Ll~~lE~~K~~~~~~~~~~~~~~~~~~v~~fa~~~f~~a~~~~~~~~~~~~~~~~f~~a~~~--------------- 110 (380)
T PF04652_consen 46 LTSLLDKLEKMKAELGDNEAILDDVAAQAYVENFALKLFNRADKEDRAGRATKQTAKTFYAASTF--------------- 110 (380)
T ss_dssp HHHHHHHHHHHHHCT---CHHC-HHHHHHHHHHHHHHHHHHHHHHHHSS--SHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHhhhccCcHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH---------------
Q ss_pred hhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 006738 114 FQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKN 160 (633)
Q Consensus 114 ~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~ 160 (633)
++. |+.+.++...+.+|+|--..+.+ +|=|+-+.+
T Consensus 111 ~~~-----------l~~f~~~~~~~~~k~kyak~~a~-~i~k~~~~g 145 (380)
T PF04652_consen 111 FEV-----------LNIFGELDEEIEEKIKYAKWKAA-RIAKALKEG 145 (380)
T ss_dssp HHH-----------HHHHHHHHHHHHHHHHHHHHHHH-HHHCTS---
T ss_pred HHH-----------HHHhCCCChHHhhceeeeeeeHh-hhHHHHHCC
No 286
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.56 E-value=8.3e+02 Score=25.27 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 006738 135 KRQCDEKRNVCEYM 148 (633)
Q Consensus 135 KkqcDekr~~YE~m 148 (633)
+--||..|.-|+..
T Consensus 121 l~DYD~~r~~~~kl 134 (225)
T cd07590 121 LQEYERLQAKVEKL 134 (225)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
No 287
>PF09404 DUF2003: Eukaryotic protein of unknown function (DUF2003); InterPro: IPR018544 This is a family of proteins of unknown function which adopt an alpha helical and beta sheet structure. ; PDB: 2GNX_A.
Probab=23.46 E-value=6.9e+02 Score=28.60 Aligned_cols=157 Identities=19% Similarity=0.190 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCc
Q 006738 42 QDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPS 121 (633)
Q Consensus 42 ~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~Ps 121 (633)
-+|=++|..|+..+..-..+-.++...|+.+=...-.+ . .-+- ..-+...|+.||.-|..-+..++.=.-..-+
T Consensus 138 ~emI~~Y~~l~~l~~~~~~~~~eL~~~Le~ile~y~~k--f-~Hp~---L~~lktsf~~Ev~iL~~LLkaq~~Isew~Fl 211 (447)
T PF09404_consen 138 IEMIDFYRKLYSLSSQKPIDYEELLNSLESILEKYSSK--F-HHPL---LSPLKTSFQLEVEILKHLLKAQVEISEWKFL 211 (447)
T ss_dssp HHHHHHHHHHHHGGGSSS--HHHHHHHHSTTTGGG-----------------HHHHHHHHHHHHHHHHHHHHHHTTT-HH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhh--C-CCHh---HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46788999998887543445555555555433222211 0 1111 1134567888988888888777665555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHhhhccCCchhHH
Q 006738 122 ESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLL 201 (633)
Q Consensus 122 ESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLL 201 (633)
+||++ ..+-+...+ +|.. . + + +.+..|... | . ..+.|.-|...|.
T Consensus 212 ~Sll~----L~~A~~kL~-~W~~--~-~----~--~q~~t~k~~------------F-------~--~~s~k~~~~p~L~ 256 (447)
T PF09404_consen 212 PSLLN----LHEAHTKLD-SWRQ--T-F----N--SQKETKKHL------------F-------G--SQSQKSSQPPHLY 256 (447)
T ss_dssp HHHHH----HHHHHHHHH-HHHH--H-H----H--TT----------------------------------------HHH
T ss_pred HHHHH----HHHHHHHHH-HHHH--H-h----h--hhccchhcc------------c-------C--CCcccCCCCchHH
Confidence 67774 222222333 3432 1 1 1 001011111 1 1 1356777788888
Q ss_pred HHHHHHHHHHHH----HHHHHhhhhhccchHHHHHHhhhhccc
Q 006738 202 TQAARHHAAQLS----FVKKALKSLEAVDPHVKMVAEQQHIDY 240 (633)
Q Consensus 202 tqaaRhhaAQl~----fF~~GLKsLE~lephVk~lae~~hiDy 240 (633)
+=+.++|.+.+. ||.+-|..-..-. =+|.++.+...||
T Consensus 257 ~WL~~f~~~LlsKfTLYFh~~L~~q~s~~-emk~l~~k~~~Dy 298 (447)
T PF09404_consen 257 QWLSKFFNALLSKFTLYFHEVLSKQGSPS-EMKSLSSKTSPDY 298 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHTS-HH-HHHHHHHH-SS-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChh-HHHHHHHhCCccH
Confidence 899999998774 4666665543322 3689999999998
No 288
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=23.42 E-value=81 Score=35.77 Aligned_cols=49 Identities=22% Similarity=0.152 Sum_probs=29.7
Q ss_pred HHhhhhccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 006738 232 VAEQQHIDYQFRGLEDDDMDDGDDDDNGSDSRGDGELSFDYRQNEQEQDAVS 283 (633)
Q Consensus 232 lae~~hiDy~fSgLedd~~d~~ed~~d~~d~~ddgeLSFDY~~n~~~~~~~~ 283 (633)
++..=|.||.=|+-||++...++++|.-+|.+| ++||-++|+...+|-.
T Consensus 224 l~~~g~~d~~ss~~ed~g~pe~~~~dkh~ds~d---~a~~~~i~e~~~~v~~ 272 (487)
T KOG4672|consen 224 LKPPGPPDGLSSNFEDSGEPEEEGHDKHYDSID---LAPDNRINENITSVPL 272 (487)
T ss_pred CCCCCCCccccCCCCCCCCcccccccccccccc---ccchhccccccccccc
Confidence 445567777777777666655543333233333 6888899988666433
No 289
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.25 E-value=3.3e+02 Score=26.35 Aligned_cols=66 Identities=24% Similarity=0.273 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhhhccCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh-hccccCCCCccccHHHHHHHHHh
Q 006738 101 ELQKLVDAYRSHIFQTITIPSESLLNELQTVE-EMKRQCDEKRNVCEYMLMRQRE-KGRSKNGKGETFSLQQLQEAHDE 177 (633)
Q Consensus 101 EL~kL~d~yr~nI~~tIt~PsESLLkeLk~Ve-emKkqcDekr~~YE~m~~~~~E-Kgr~k~~K~e~~i~eqle~~r~~ 177 (633)
|+..|=|+|+-+=|.- =++|. +--+.|=-.|.+|-+|+.+|.- .|+.|..++.-+-.+-||.-.++
T Consensus 29 ~~R~lGD~YVkdEFrr-----------Hk~vnp~~~~~FlteW~~Ya~~l~qql~~~g~~K~~~g~~ld~d~le~l~de 96 (125)
T KOG4100|consen 29 ELRALGDQYVKDEFRR-----------HKTVNPLEAQGFLTEWERYAVALSQQLSSAGKWKGEIGSDLDSDKLEQLSDE 96 (125)
T ss_pred HHHHHHHHHHHHHHHH-----------hccCChHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCHHHHHHcCHH
Confidence 7888888887765543 22333 3345688899999999975332 24555555555445555554443
No 290
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=23.25 E-value=8.1e+02 Score=25.00 Aligned_cols=48 Identities=13% Similarity=0.264 Sum_probs=25.5
Q ss_pred HHHHHHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006738 169 QQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEA 224 (633)
Q Consensus 169 eqle~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~ 224 (633)
..|.++.+++++--..++.. -..|.+.+=+.+.+-..||.-.+.++=.
T Consensus 144 ~kL~kae~el~~a~~~Ye~l--------N~~Lk~ELP~l~~~r~~~l~~~f~s~~~ 191 (224)
T cd07591 144 TKLPRAEKELDEAKEVYETL--------NDQLKTELPQLVDLRIPYLDPSFEAFVK 191 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55555656665444444432 2245556666666666666655554433
No 291
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=23.19 E-value=9.8e+02 Score=30.28 Aligned_cols=124 Identities=21% Similarity=0.251 Sum_probs=62.2
Q ss_pred hhHHHHHHHhHHHHHHHHHHHH--------HHHhhhhccCCcHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcc
Q 006738 88 SGKVLLMLGKVQFELQKLVDAY--------RSHIFQTITIPSESLLNELQTVE--EMKRQCDEKRNVCEYMLMRQREKGR 157 (633)
Q Consensus 88 ~g~v~l~lgk~q~EL~kL~d~y--------r~nI~~tIt~PsESLLkeLk~Ve--emKkqcDekr~~YE~m~~~~~EKgr 157 (633)
-|++--..+.-+.||..+...| ..|+-..|. =+.-||.|-++-. .||--||+--++-..++ +|.|
T Consensus 1028 ~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~-~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l----~kkr 1102 (1189)
T KOG1265|consen 1028 AGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQIS-LLRKLLSEAQTNQTKALKESLEKETKELKKKL----DKKR 1102 (1189)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 4566666677777877777655 344444442 2344444444433 55555655554443333 4445
Q ss_pred ccCCCCccccHH--HHHHHHHhh-HhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHH
Q 006738 158 SKNGKGETFSLQ--QLQEAHDEY-DQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKK 217 (633)
Q Consensus 158 ~k~~K~e~~i~e--qle~~r~~f-qEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~ 217 (633)
.+..|++.-|+. |++...+|- .--.++++=-.|-|+++|.+.- .|+.+-|.+++++..+
T Consensus 1103 ~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~-e~L~k~~~~~leql~e 1164 (1189)
T KOG1265|consen 1103 MEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQ-EQLVKKHLEVLEQLAE 1164 (1189)
T ss_pred HHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 555555555552 222222222 2225666666666666555432 3444555555444443
No 292
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=23.03 E-value=1.5e+02 Score=32.60 Aligned_cols=55 Identities=25% Similarity=0.221 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhH
Q 006738 123 SLLNELQTVEEMKRQCDEKRN----VCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEA 182 (633)
Q Consensus 123 SLLkeLk~VeemKkqcDekr~----~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEea 182 (633)
.|+|||-.|-+=|..-.+.|+ .||.+|. ++|+.--=..| .+|.|+.-.||-||-+
T Consensus 12 ~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~-~l~~~~~~~~~----~~~~~~~qyrecqell 70 (328)
T PF15369_consen 12 NLIKELARVSEEKEVTEERLKAEQESFEKKIR-QLEEQNELIIK----EREDLQQQYRECQELL 70 (328)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHH----HHHHHHHHHHHHHHHH
Confidence 577888888766666666665 4888886 77654321111 1366776677777544
No 293
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=22.93 E-value=4.3e+02 Score=24.92 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 122 ESLLNELQTVEEMKRQCDEKRNVCEYMLM 150 (633)
Q Consensus 122 ESLLkeLk~VeemKkqcDekr~~YE~m~~ 150 (633)
+.+.++|...++.+.+-.+....|+..+.
T Consensus 39 ~~I~~~l~~A~~~~~eA~~~~~e~~~~l~ 67 (159)
T PRK13461 39 SEIDNKIEKADEDQKKARELKLKNERELK 67 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445688888899999999999998886
No 294
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.74 E-value=1.7e+03 Score=28.53 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHH
Q 006738 96 GKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVE 132 (633)
Q Consensus 96 gk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~Ve 132 (633)
-.-+.||...+++++.-+.+.|. =++.|=.||+..+
T Consensus 768 ~~e~~e~~~~~~~~~~~l~~e~~-~l~~l~~el~~r~ 803 (1074)
T KOG0250|consen 768 ELEAQELEEYYAAGREKLQGEIS-KLDALKEELKLRE 803 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 33455666777777777766543 3444444555444
No 295
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=22.65 E-value=3.8e+02 Score=27.06 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.8
Q ss_pred hhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 115 QTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMR 151 (633)
Q Consensus 115 ~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~ 151 (633)
++|--=-+.+.++|...+++|.+-++....||..+..
T Consensus 80 ~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~ 116 (204)
T PRK09174 80 GIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQ 116 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455668999999999999999999999974
No 296
>COG3679 Regulatory protein involved in competence development and sporulation [Replication, recombination and repair; Signal transduction mechanisms]
Probab=22.55 E-value=3.5e+02 Score=25.86 Aligned_cols=76 Identities=20% Similarity=0.181 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHH
Q 006738 64 EFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRN 143 (633)
Q Consensus 64 efsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~ 143 (633)
+-+..++|.-.....+.+++.|++..+.|..|=++|-+++.+-.+= .|+ =+. ++..+.++|+..+.-=+
T Consensus 14 ~~i~~seey~~~~~~~~~v~~d~eA~~lf~~F~~~q~~~q~~q~~G-~~~-------d~~---~~~~~q~~~~~i~~~e~ 82 (118)
T COG3679 14 EAIRDSEEYQALKEAKRAVEADEEAKKLFEEFRQLQEQFQEKQRFG-YEP-------DYE---EVTKAQELKQEIQLNEK 82 (118)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCC-------cHH---HHHHHHHHHHHHhhcHH
Confidence 3334455556666667788888999999999999988888765443 222 222 34445577888888888
Q ss_pred HHHHHHH
Q 006738 144 VCEYMLM 150 (633)
Q Consensus 144 ~YE~m~~ 150 (633)
++.+|.+
T Consensus 83 v~~f~ea 89 (118)
T COG3679 83 VSAFMEA 89 (118)
T ss_pred HHHHHHH
Confidence 8888876
No 297
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=21.82 E-value=6.9e+02 Score=26.05 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=44.0
Q ss_pred hhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh--hhcccCCchhhhHHHHHHHhHHHHHHHH
Q 006738 29 AQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLL--EKTALNDNEESGKVLLMLGKVQFELQKL 105 (633)
Q Consensus 29 a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll--~kta~~dd~e~g~v~l~lgk~q~EL~kL 105 (633)
.++..++++-.+ -.++....+.+...+...+++..++...|.......= .... ++.+..|..+..--.....+
T Consensus 59 ~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~~~~a~~~~~~l----~~n~~~L~~~~~~L~p~~~l 134 (267)
T PF11887_consen 59 RNLADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSATGLADTGTDFL----ADNRDNLIRALDDLRPTTDL 134 (267)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHH
Confidence 334444444334 5556666666666666666666666666655433211 0000 23333444444444555667
Q ss_pred HHHHHHHhhhh
Q 006738 106 VDAYRSHIFQT 116 (633)
Q Consensus 106 ~d~yr~nI~~t 116 (633)
+..|.-++..+
T Consensus 135 L~~~~p~l~c~ 145 (267)
T PF11887_consen 135 LAKYSPELPCT 145 (267)
T ss_pred HHHhCchHHHH
Confidence 77777766665
No 298
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=21.76 E-value=1.4e+03 Score=27.10 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006738 129 QTVEEMKRQCDEKRNVCEYMLMRQRE 154 (633)
Q Consensus 129 k~VeemKkqcDekr~~YE~m~~~~~E 154 (633)
+...+|+|+.+-+++.|+.++.++.|
T Consensus 370 ~~~~~L~R~~~~~~~lY~~lL~r~~e 395 (726)
T PRK09841 370 QEVLRLSRDVEAGRAVYLQLLNRQQE 395 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34458999999999999999985554
No 299
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=21.72 E-value=6.6e+02 Score=25.75 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHhHHHHHHh
Q 006738 127 ELQTVEEMKRQCDEKRNVCE----YMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLK 190 (633)
Q Consensus 127 eLk~VeemKkqcDekr~~YE----~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaqmc~frLK 190 (633)
-+++++.||+-|..-|.--+ +++. |----=+--.-.|...-||||.-|..-.+|+|..+|-|-
T Consensus 103 T~~Elq~mr~~ln~FR~qm~dlE~~l~~-QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~ 169 (179)
T PF14723_consen 103 TVQELQQMRRSLNSFREQMMDLELHLMR-QQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLE 169 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777766665433 2221 111111112223334458999888888888888877654
No 300
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=21.72 E-value=5.6e+02 Score=30.77 Aligned_cols=33 Identities=30% Similarity=0.190 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHH
Q 006738 97 KVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCD 139 (633)
Q Consensus 97 k~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcD 139 (633)
|-.+||.+.+..|+.-|.-| +|-.|+|+|.+..
T Consensus 177 k~~~~~~~~l~~~v~~~yc~----------~~~~~~e~~~~~~ 209 (757)
T KOG4368|consen 177 KQARELLAALQKVVVPIYCT----------SFLAVEEDKQQKI 209 (757)
T ss_pred HHHHHHHHHHHHHhHHHHHh----------hhhhhHhHHHHHH
Confidence 44578999999998766665 3446777776643
No 301
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=21.45 E-value=1.7e+02 Score=27.19 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccC-CchhhhHHHHHHHhHHHH
Q 006738 48 YDSLLSAAAATANSAYEFSESLQELGACLLEKTALN-DNEESGKVLLMLGKVQFE 101 (633)
Q Consensus 48 ydsllsaaaa~~ns~yefsEaleemGscll~kta~~-dd~e~g~v~l~lgk~q~E 101 (633)
|+.++..+....-.+|+..-.+|+-...++++.+.+ +|+++-+||.+|.+..++
T Consensus 72 ~~~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~~d~d~k~v~~~L~~~e~~ 126 (135)
T cd01048 72 YNQLVEQGPKSLQDALEVGVLIEELDIADYDRLLERTQNPDIRDVFENLQAASRN 126 (135)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 778878888888888888888888888887775555 689999999999987654
No 302
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=21.41 E-value=8.8e+02 Score=26.41 Aligned_cols=41 Identities=7% Similarity=0.124 Sum_probs=34.6
Q ss_pred HHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006738 109 YRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYML 149 (633)
Q Consensus 109 yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~ 149 (633)
...+|.+.+.++.|.+-|||-.-+-...-.+..++.-|-++
T Consensus 212 ~l~~l~e~Lgls~~kv~KDLdlYrsnLeKm~QA~elmeE~~ 252 (283)
T PLN00047 212 ALEKLCAALNINKRSVDRDLDVYRGLLSKLVQAKELLKEYV 252 (283)
T ss_pred HHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 66778899999999999999988877777788888877776
No 303
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=21.14 E-value=7.9e+02 Score=24.09 Aligned_cols=24 Identities=38% Similarity=0.353 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 006738 133 EMKRQCDEKRNVCEYMLMRQREKGR 157 (633)
Q Consensus 133 emKkqcDekr~~YE~m~~~~~EKgr 157 (633)
-|++|.++||+..+.+.. ..++-+
T Consensus 135 ~me~Ql~~kr~~i~~i~~-~~~~~~ 158 (162)
T PF05983_consen 135 MMEEQLEEKREEIEEIRK-VCEKAR 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 589999999999888875 555543
No 304
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.11 E-value=1.3e+03 Score=26.59 Aligned_cols=113 Identities=11% Similarity=0.160 Sum_probs=67.1
Q ss_pred HhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHH
Q 006738 96 GKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVE---EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQ 172 (633)
Q Consensus 96 gk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~Ve---emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle 172 (633)
-.+++=..+-++.+......+...|+..=|+.++... +.++.|++-|+.|+...+.+. .++
T Consensus 17 ~~~rk~~~k~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~---------------~~i- 80 (560)
T PF06160_consen 17 YIYRKRYYKEIDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQL---------------PEI- 80 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhh---------------HHH-
Confidence 3456777888888888888888889877666555544 788899998888988775211 111
Q ss_pred HHHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 006738 173 EAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDP 227 (633)
Q Consensus 173 ~~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lep 227 (633)
+..-|+ +.-+.++.+=.|.++.-.-+.+.+..--.+..=.++||+.|...+-
T Consensus 81 -e~~L~~--ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~ 132 (560)
T PF06160_consen 81 -EEQLFE--AEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEE 132 (560)
T ss_pred -HHHHHH--HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111233 2222333333344444444555555555566666666665554443
No 305
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.72 E-value=1e+03 Score=25.16 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=83.1
Q ss_pred hhhHHHHH-HHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHH
Q 006738 28 LAQLDELA-QASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLV 106 (633)
Q Consensus 28 ~a~ldEl~-~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~ 106 (633)
++.||-++ +.++...++-.-|.-+--+-.--++...+..+.|+.||.|+. +.+++|-.|-..+-| .++
T Consensus 67 l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~---------~~s~~l~~l~~~~~~--~yl 135 (240)
T cd07667 67 LGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIG---------NCSTALEELTEDMTE--DFL 135 (240)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhhH--HHH
Confidence 34444444 334444455555555555555556666778888888888883 334444444443321 222
Q ss_pred HHHHHHhhhhccCCcHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhhHh
Q 006738 107 DAYRSHIFQTITIPSESLLN--ELQTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEAT 183 (633)
Q Consensus 107 d~yr~nI~~tIt~PsESLLk--eLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEeaq 183 (633)
+.++.-+.-+= -+-.||| |.+.++ |.+-++--.|..=-.++..++|+...+- | ..-+++.++..-||
T Consensus 136 ~~Lke~~~Y~~--slk~vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~v---e-~f~~~~~~E~~~Fe---- 205 (240)
T cd07667 136 PVLREYILYSE--SMKNVLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRV---E-CFNADLKADMERWQ---- 205 (240)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHH----
Confidence 22222222210 1123455 777666 6665554323222223333555554443 2 24488888888888
Q ss_pred HHHHHHh--hhccCCchhHHHHHHHHHHHHHHHHHH
Q 006738 184 LFVFRLK--SLKQGQSRSLLTQAARHHAAQLSFVKK 217 (633)
Q Consensus 184 mc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fF~~ 217 (633)
+.| ++|. .+.+|-..=|+||..=+.-+.+
T Consensus 206 ----~~K~~e~k~-~l~~~Ad~~i~fy~~~~~~We~ 236 (240)
T cd07667 206 ----NNKRQDFRQ-LLMGMADKNIQYYEKCLTAWES 236 (240)
T ss_pred ----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 333 4443 3455555566666655554443
No 306
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.68 E-value=1.5e+03 Score=27.29 Aligned_cols=190 Identities=19% Similarity=0.197 Sum_probs=110.8
Q ss_pred hHhHHHHHHHHHHHHHHHHH---Hhh----------hHHHHHHHHHHHhhhhhhhcccCCchh---------hhHHHHHH
Q 006738 38 SQDMQDMRGCYDSLLSAAAA---TAN----------SAYEFSESLQELGACLLEKTALNDNEE---------SGKVLLML 95 (633)
Q Consensus 38 ~qdm~~Mk~~ydsllsaaaa---~~n----------s~yefsEaleemGscll~kta~~dd~e---------~g~v~l~l 95 (633)
.-++.+|.+|.|.|.+.=.+ +++ ...+-.|.=.++..|++.+..+.+++. ...-|.-|
T Consensus 84 ~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~E~~~L~~~g~i~e~FF~vL 163 (655)
T KOG3758|consen 84 SEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNFQLSSEELDLLTESGPIDEDFFKVL 163 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHhcCCcchHHHHHHH
Confidence 44599999999988764332 222 233445555689999999988875442 12334455
Q ss_pred HhHHHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccCC-CCccccHHHHHH
Q 006738 96 GKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREK-GRSKNG-KGETFSLQQLQE 173 (633)
Q Consensus 96 gk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~VeemKkqcDekr~~YE~m~~~~~EK-gr~k~~-K~e~~i~eqle~ 173 (633)
++|| |+ .| |--+....|. ..-=+..+|.|-+--+. .||-... ..-+ +=+..+ -+.--+.+=|.+
T Consensus 164 ~rvq-eI---h~----~~~~Ll~~~~--~~Ag~eime~M~~~~E~---a~erl~r-~~qs~e~~~l~~t~~~E~~~il~k 229 (655)
T KOG3758|consen 164 DRVQ-EI---HD----NCRLLLQTPN--QTAGLEIMEKMALIQEG---AYERLFR-WSQSSECRNLTGTDSQEVSPILRK 229 (655)
T ss_pred HHHH-HH---HH----HHHHHHhccc--hhhHHHHHHHHHHHHHH---HHHHHHH-HhhhHhhcCCccccchhhHHHHHH
Confidence 5553 22 22 2222222222 11123344455443332 2444332 2211 222222 233344578999
Q ss_pred HHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHH----------------HHHHHHHHHHhhhhhccch----HHHHHH
Q 006738 174 AHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHH----------------AAQLSFVKKALKSLEAVDP----HVKMVA 233 (633)
Q Consensus 174 ~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhh----------------aAQl~fF~~GLKsLE~lep----hVk~la 233 (633)
|..-.+++-.||-|.|++.-+-+...|++|.+.-. |-=+.|.-|-|..|+..-+ +|+.|-
T Consensus 230 A~~~L~~~p~lfk~~ide~~~aR~~~L~~~Fisaltrg~~~~~PrpIel~ahDPlRyIGDmLawlHq~ia~Ekelv~aLf 309 (655)
T KOG3758|consen 230 AFVFLSSRPVLFKYLIDEVGTARSQSLLRQFISALTRGGPGGMPRPIELHAHDPLRYIGDMLAWLHQAIANEKELVEALF 309 (655)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCccccCCChHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 99999999999999999999999999999887644 2256777787877765543 455554
Q ss_pred hhhhcccc
Q 006738 234 EQQHIDYQ 241 (633)
Q Consensus 234 e~~hiDy~ 241 (633)
.-+|-|.|
T Consensus 310 d~~~~d~q 317 (655)
T KOG3758|consen 310 DFKKEDLQ 317 (655)
T ss_pred cchhhhhc
Confidence 44455555
No 307
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=20.61 E-value=6.2e+02 Score=31.50 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHHHHHHHHHhh
Q 006738 35 AQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIF 114 (633)
Q Consensus 35 ~~a~qdm~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~ 114 (633)
.++.+-+..+++--+-+....+..-.+..++.++....-.-+ |+-+.++-+ ---.|.|+.+-+|..+-+..
T Consensus 836 i~~~~K~~~l~kns~k~~ei~s~lke~r~e~~~~~~~~~~~i--------d~lv~~IK~-~~~tq~~~~~~~d~~~~~~e 906 (1259)
T KOG0163|consen 836 IAGIRKINALLKNSLKTIEILSRLKEGREEIISGANSTYRQI--------DDLVKKIKM-PRITQREMNSEYDVAVKNYE 906 (1259)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchHHHHhhhhhHHHHH--------HHHHHHhcc-cccchHHHHHHHHHHHHHHH
Q ss_pred hhccCCcHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhccccCCCCccccHHHHHHHHHhhHhh
Q 006738 115 QTITIPSESLLNELQTVEEMKRQ--------CDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQE 181 (633)
Q Consensus 115 ~tIt~PsESLLkeLk~VeemKkq--------cDekr~~YE~m~~~~~EKgr~k~~K~e~~i~eqle~~r~~fqEe 181 (633)
.. +.-++| ||-|.++|+|++ -+.||+.-|.+. ++|-+-.+.+|.|--++.-+|.+++.-|||
T Consensus 907 ~~-~~~l~s--k~~q~~~e~er~rk~qE~~E~ER~rrEaeek~--rre~ee~k~~k~e~e~kRK~eEeqr~~qee 976 (1259)
T KOG0163|consen 907 KL-VKRLDS--KEQQQIEELERLRKIQELAEAERKRREAEEKR--RREEEEKKRAKAEMETKRKAEEEQRKAQEE 976 (1259)
T ss_pred HH-HHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 308
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.52 E-value=6.1e+02 Score=29.89 Aligned_cols=35 Identities=11% Similarity=0.292 Sum_probs=24.8
Q ss_pred CchhhhHHHHHHHhHHHHHHHHHHHHHHHhhhhccC
Q 006738 84 DNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITI 119 (633)
Q Consensus 84 dd~e~g~v~l~lgk~q~EL~kL~d~yr~nI~~tIt~ 119 (633)
.|+....+.-+|..+..+|......++. +...|-|
T Consensus 260 ~d~~l~~~~~~l~ea~~~l~ea~~el~~-~~~~le~ 294 (557)
T COG0497 260 YDGKLSELAELLEEALYELEEASEELRA-YLDELEF 294 (557)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 4778888888888888888887776554 3344444
No 309
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=20.43 E-value=1.2e+02 Score=30.12 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccH
Q 006738 127 ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSL 168 (633)
Q Consensus 127 eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i~ 168 (633)
-|..||=|.+|..+--..||.-+....+|-..+..|.+-++.
T Consensus 36 AlgeieiL~kQl~rek~afe~a~~~vk~k~~~Es~k~dqL~~ 77 (153)
T PF15175_consen 36 ALGEIEILSKQLEREKLAFEKALGSVKSKVLQESSKKDQLIT 77 (153)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999998888998888887766655
No 310
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=20.36 E-value=1.3e+03 Score=26.22 Aligned_cols=11 Identities=0% Similarity=0.142 Sum_probs=5.4
Q ss_pred HHHHHHHHhhH
Q 006738 169 QQLQEAHDEYD 179 (633)
Q Consensus 169 eqle~~r~~fq 179 (633)
+.++++|..|.
T Consensus 367 ~~v~~Er~~~~ 377 (582)
T PF09731_consen 367 EKVEQERNGRL 377 (582)
T ss_pred HHHHHHHHHHH
Confidence 44445555544
No 311
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]
Probab=20.35 E-value=86 Score=33.43 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccchHHH
Q 006738 199 SLLTQAARHHAAQLSFVKKALKSLEAVDPHVK 230 (633)
Q Consensus 199 sLLtqaaRhhaAQl~fF~~GLKsLE~lephVk 230 (633)
+|..+.+.+||+|. |||.-.++|+..-.|+-
T Consensus 39 ~l~~s~~~~~a~~r-~~r~d~~~L~k~p~hl~ 69 (263)
T KOG2818|consen 39 NLELSKAALHAAQR-LFRTDFSSLKKGPKHLA 69 (263)
T ss_pred hHHHHHHHHHHHHH-Hhhcchhhhhhcchhhe
Confidence 57889999999999 99999999998877764
Done!