BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006740
(633 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/624 (63%), Positives = 479/624 (76%), Gaps = 3/624 (0%)
Query: 10 FVHPQLLRIVAKMSFFDTFLFYVIHILDKLDLWHRLPVLLGLAYLGIRRHLHQRYNLLHV 69
F+H I A+MS D FL ++H +DK+ WH+LPV LGL YL +RRHLHQ+YNLL+V
Sbjct: 27 FIHKDFHEIYARMSLLDRFLLLIVHGVDKMVPWHKLPVFLGLTYLEVRRHLHQQYNLLNV 86
Query: 70 GEI-NGQKYDTEEICYRTADGTCNHPSDDTIGSQGTFFGRNMPPSTSTYGLLDPHPTVVA 128
G+ G ++D YRTADG N P ++ +GSQ +FFGRN PP L P P VVA
Sbjct: 87 GQTPTGIRFDPANYPYRTADGKFNDPFNEGVGSQNSFFGRNCPPVDQKSKLRRPDPMVVA 146
Query: 129 TKLLARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDSKQVELTAPDEEIASGCPLKSFK 188
TKLL RKKFID GKQFNMIA SWIQFMIHDW DHLED+ Q+EL AP +E+AS CPL SF+
Sbjct: 147 TKLLGRKKFIDTGKQFNMIAASWIQFMIHDWIDHLEDTHQIELVAP-KEVASKCPLSSFR 205
Query: 189 FFKTKGVPTSTPSVKTGSLNTRTPWWDASVIYGNNEEGMKRVRTFX-XXXXXXXXXXXXE 247
F KTK VPT +KTGS N RTPWWD+SVIYG+N + + RVRT+
Sbjct: 206 FLKTKEVPTGFFEIKTGSQNIRTPWWDSSVIYGSNSKTLDRVRTYKDGKLKISEETGLLL 265
Query: 248 HDEKWIPISGDIRNFWAGFTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAV 307
HDE + ISGDIRN WAG + LQALF+KEHNAVCD LKD DL+DE LYR+ARLVTSAV
Sbjct: 266 HDEDGLAISGDIRNSWAGVSALQALFIKEHNAVCDALKDEDDDLEDEDLYRYARLVTSAV 325
Query: 308 IAKVHTIDWTVELLKTDTLSAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHG 367
+AK+HTIDWTV+LLKTDTL AGMR NWYGLLGKKFKD FGH IL G+VG+KKP++HG
Sbjct: 326 VAKIHTIDWTVQLLKTDTLLAGMRANWYGLLGKKFKDSFGHAGSSILGGVVGMKKPQNHG 385
Query: 368 VPYSLTEEFASVYRMHSLLPDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSK 427
VPYSLTE+F SVYRMHSLLPD+L + DI+ P+ QE++M+++ G++GE +S
Sbjct: 386 VPYSLTEDFTSVYRMHSLLPDQLHILDIDDVPGTNKSLPLIQEISMRDLIGRKGEETMSH 445
Query: 428 IGMEQMLVSMGHQACGAVTLWNYPLWMRNLVAHDINGEDRPNPVDMAALEIYRDRERGVS 487
IG +++VSMGHQA GA+ L NYP+W+R++V HD NG+ RP+ VD+AALEIYRDRER V
Sbjct: 446 IGFTKLMVSMGHQASGALELMNYPMWLRDIVPHDPNGQARPDHVDLAALEIYRDRERSVP 505
Query: 488 RYNEFRRNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEKKIKGFAISE 547
RYNEFRR++ MIPI+KWEDLT+D+E I+VL +VY DVE++DL VGL AEKKIKGFAISE
Sbjct: 506 RYNEFRRSMFMIPITKWEDLTEDEEAIEVLDDVYDGDVEELDLLVGLMAEKKIKGFAISE 565
Query: 548 TAFFIFLLIASRRLEADRFFTTNFNSKTYTEKGLEWVNKTETLKDVIDRHFPEMTKKWMR 607
TAF+IFL++A+RRLEADRFFT++FN YT+KGLEWVN TE+LKDVIDRH+P+MT KWM
Sbjct: 566 TAFYIFLIMATRRLEADRFFTSDFNETIYTKKGLEWVNTTESLKDVIDRHYPDMTDKWMN 625
Query: 608 CSSAFSVWDSEPNQSNYIPLYLRL 631
SAFSVWDS P N IPLYLR+
Sbjct: 626 SESAFSVWDSPPLTKNPIPLYLRI 649
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 167/452 (36%), Gaps = 118/452 (26%)
Query: 108 RNMPPSTSTYGLLD-PHPTVVATKLLARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDS 166
R+ P T G P ++ + L R+KFI + + N++ + Q H
Sbjct: 133 RDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH--------- 183
Query: 167 KQVELTAPDEEIASGCPLKSFKFFKTKGV--PTSTPSVKTGSLNTRTPWWDASVIYGNNE 224
+FFKT G P T ++ G D IYG+N
Sbjct: 184 ---------------------QFFKTSGKMGPGFTKALGHGV--------DLGHIYGDNL 214
Query: 225 EGMKRVRTFX------------XXXXXXXXXXXXEHDEKWIP------ISGDIRNFWAGF 266
E ++R F H + IP + ++ G
Sbjct: 215 ERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGL 274
Query: 267 TLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTDTL 326
L ++++EHN VCD LK +P DE+L++ ARL+ K+ I+ V+ L L
Sbjct: 275 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFL 333
Query: 327 SAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTEEFASVYRMHSLL 386
++ + L G +F+ R+ + EF +Y H L+
Sbjct: 334 Q--LKFDPELLFGAQFQY-------------------RNR-----IAMEFNQLYHWHPLM 367
Query: 387 PDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQMLVSMGHQACGAVT 446
PD DY+ +Q + M L G+E ++ + Q G +
Sbjct: 368 PDSF-----RVGPQDYS---YEQFLFNTSM--------LVDYGVEALVDAFSRQPAGRIG 411
Query: 447 LWNYPLWMRNLVAHDINGEDRPNPVDMAALEIYRDRERGVSRYNEFRRNLLMIPISKWED 506
RN+ H ++ +A I R + +NE+R+ M P + +++
Sbjct: 412 ------GGRNIDHHILH---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQE 456
Query: 507 LTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEK 538
LT +KE+ L+E+YG D++ ++ GL EK
Sbjct: 457 LTGEKEMAAELEELYG-DIDALEFYPGLLLEK 487
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 167/452 (36%), Gaps = 118/452 (26%)
Query: 108 RNMPPSTSTYGLLD-PHPTVVATKLLARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDS 166
R+ P T G P ++ + L R+KFI + + N++ + Q H
Sbjct: 133 RDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH--------- 183
Query: 167 KQVELTAPDEEIASGCPLKSFKFFKTKGV--PTSTPSVKTGSLNTRTPWWDASVIYGNNE 224
+FFKT G P T ++ G D IYG+N
Sbjct: 184 ---------------------QFFKTSGKMGPGFTKALGHGV--------DLGHIYGDNL 214
Query: 225 EGMKRVRTFX------------XXXXXXXXXXXXEHDEKWIP------ISGDIRNFWAGF 266
E ++R F H + IP + ++ G
Sbjct: 215 ERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGL 274
Query: 267 TLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTDTL 326
L ++++EHN VCD LK +P DE+L++ ARL+ K+ I+ V+ L L
Sbjct: 275 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFL 333
Query: 327 SAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTEEFASVYRMHSLL 386
++ + L G +F+ R+ + EF +Y H L+
Sbjct: 334 Q--LKFDPELLFGAQFQY-------------------RNR-----IAMEFNQLYHWHPLM 367
Query: 387 PDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQMLVSMGHQACGAVT 446
PD DY+ +Q + M L G+E ++ + Q G +
Sbjct: 368 PDSF-----RVGPQDYS---YEQFLFNTSM--------LVDYGVEALVDAFSRQPAGRIG 411
Query: 447 LWNYPLWMRNLVAHDINGEDRPNPVDMAALEIYRDRERGVSRYNEFRRNLLMIPISKWED 506
RN+ H ++ +A I R + +NE+R+ M P + +++
Sbjct: 412 ------GGRNIDHHILH---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQE 456
Query: 507 LTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEK 538
LT +KE+ L+E+YG D++ ++ GL EK
Sbjct: 457 LTGEKEMAAELEELYG-DIDALEFYPGLLLEK 487
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 167/452 (36%), Gaps = 118/452 (26%)
Query: 108 RNMPPSTSTYGLLD-PHPTVVATKLLARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDS 166
R+ P T G P ++ + L R+KFI + + N++ + Q H
Sbjct: 137 RDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH--------- 187
Query: 167 KQVELTAPDEEIASGCPLKSFKFFKTKGV--PTSTPSVKTGSLNTRTPWWDASVIYGNNE 224
+FFKT G P T ++ G D IYG+N
Sbjct: 188 ---------------------QFFKTSGKMGPGFTKALGHGV--------DLGHIYGDNL 218
Query: 225 EGMKRVRTFX------------XXXXXXXXXXXXEHDEKWIP------ISGDIRNFWAGF 266
E ++R F H + IP + ++ G
Sbjct: 219 ERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGL 278
Query: 267 TLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTDTL 326
L ++++EHN VCD LK +P DE+L++ ARL+ K+ I+ V+ L L
Sbjct: 279 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFL 337
Query: 327 SAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTEEFASVYRMHSLL 386
++ + L G +F+ R+ + EF +Y H L+
Sbjct: 338 Q--LKFDPELLFGAQFQY-------------------RNR-----IAMEFNQLYHWHPLM 371
Query: 387 PDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQMLVSMGHQACGAVT 446
PD DY+ +Q + M L G+E ++ + Q G +
Sbjct: 372 PDSF-----RVGPQDYS---YEQFLFNTSM--------LVDYGVEALVDAFSRQPAGRIG 415
Query: 447 LWNYPLWMRNLVAHDINGEDRPNPVDMAALEIYRDRERGVSRYNEFRRNLLMIPISKWED 506
RN+ H ++ +A I R + +NE+R+ M P + +++
Sbjct: 416 ------GGRNIDHHILH---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQE 460
Query: 507 LTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEK 538
LT +KE+ L+E+YG D++ ++ GL EK
Sbjct: 461 LTGEKEMAAELEELYG-DIDALEFYPGLLLEK 491
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 167/452 (36%), Gaps = 118/452 (26%)
Query: 108 RNMPPSTSTYGLLD-PHPTVVATKLLARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDS 166
R+ P T G P ++ + L R+KFI + + N++ + Q H
Sbjct: 157 RDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH--------- 207
Query: 167 KQVELTAPDEEIASGCPLKSFKFFKTKGV--PTSTPSVKTGSLNTRTPWWDASVIYGNNE 224
+FFKT G P T ++ G D IYG+N
Sbjct: 208 ---------------------QFFKTSGKMGPGFTKALGHGV--------DLGHIYGDNL 238
Query: 225 EGMKRVRTFX------------XXXXXXXXXXXXEHDEKWIP------ISGDIRNFWAGF 266
E ++R F H + IP + ++ G
Sbjct: 239 ERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGL 298
Query: 267 TLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTDTL 326
L ++++EHN VCD LK +P DE+L++ ARL+ K+ I+ V+ L L
Sbjct: 299 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFL 357
Query: 327 SAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTEEFASVYRMHSLL 386
++ + L G +F+ R+ + EF +Y H L+
Sbjct: 358 Q--LKFDPELLFGAQFQY-------------------RNR-----IAMEFNQLYHWHPLM 391
Query: 387 PDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQMLVSMGHQACGAVT 446
PD DY+ +Q + M L G+E ++ + Q G +
Sbjct: 392 PDSF-----RVGPQDYS---YEQFLFNTSM--------LVDYGVEALVDAFSRQPAGRIG 435
Query: 447 LWNYPLWMRNLVAHDINGEDRPNPVDMAALEIYRDRERGVSRYNEFRRNLLMIPISKWED 506
RN+ H ++ +A I R + +NE+R+ M P + +++
Sbjct: 436 ------GGRNIDHHILH---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQE 480
Query: 507 LTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEK 538
LT +KE+ L+E+YG D++ ++ GL EK
Sbjct: 481 LTGEKEMAAELEELYG-DIDALEFYPGLLLEK 511
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/452 (21%), Positives = 165/452 (36%), Gaps = 118/452 (26%)
Query: 108 RNMPPSTSTYGLLD-PHPTVVATKLLARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDS 166
R+ P T G P ++ + L R+KFI + + N++ + Q H
Sbjct: 157 RDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH--------- 207
Query: 167 KQVELTAPDEEIASGCPLKSFKFFKTKGV--PTSTPSVKTGSLNTRTPWWDASVIYGNNE 224
+FFKT G P T ++ G D IYG+N
Sbjct: 208 ---------------------QFFKTSGKMGPGFTKALGHGV--------DLGHIYGDNL 238
Query: 225 EGMKRVRTFX------------XXXXXXXXXXXXEHDEKWIP------ISGDIRNFWAGF 266
E ++R F H + IP + ++ G
Sbjct: 239 ERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGL 298
Query: 267 TLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTDTL 326
L ++++EHN VCD LK +P DE+L++ ARL+ K+ ++ +L
Sbjct: 299 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYAQQL---SGY 355
Query: 327 SAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTEEFASVYRMHSLL 386
++ + L G +F+ R+ + EF +Y H L+
Sbjct: 356 FLQLKFDPELLFGAQFQY-------------------RNR-----IAMEFNQLYHFHPLM 391
Query: 387 PDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQMLVSMGHQACGAVT 446
PD DY+ +Q + M L G+E ++ + Q G +
Sbjct: 392 PDSF-----RVGPQDYS---YEQFLFNTSM--------LVDYGVEALVDAFSRQPAGRIG 435
Query: 447 LWNYPLWMRNLVAHDINGEDRPNPVDMAALEIYRDRERGVSRYNEFRRNLLMIPISKWED 506
RN+ H ++ +A I R + +NE+R+ M P + +++
Sbjct: 436 ------GGRNIDHHILH---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQE 480
Query: 507 LTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEK 538
LT +KE+ L+E+YG D++ ++ GL EK
Sbjct: 481 LTGEKEMAAELEELYG-DIDALEFYPGLLLEK 511
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 167/452 (36%), Gaps = 118/452 (26%)
Query: 108 RNMPPSTSTYGLLD-PHPTVVATKLLARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDS 166
R+ P T G P ++ + L R+KFI + + N++ + Q H
Sbjct: 126 RDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH--------- 176
Query: 167 KQVELTAPDEEIASGCPLKSFKFFKTKGV--PTSTPSVKTGSLNTRTPWWDASVIYGNNE 224
+FFKT G P T ++ G D IYG+N
Sbjct: 177 ---------------------QFFKTSGKMGPGFTKALGHGV--------DLGHIYGDNL 207
Query: 225 EGMKRVRTFX------------XXXXXXXXXXXXEHDEKWIP------ISGDIRNFWAGF 266
E ++R F H + IP + ++ G
Sbjct: 208 ERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGL 267
Query: 267 TLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTDTL 326
L ++++EHN VCD LK +P DE+L++ ARL+ K+ I+ V+ L L
Sbjct: 268 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFL 326
Query: 327 SAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTEEFASVYRMHSLL 386
++ + L G +F+ R+ + EF +Y H L+
Sbjct: 327 Q--LKFDPELLFGAQFQY-------------------RNR-----IAMEFNQLYHWHPLM 360
Query: 387 PDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQMLVSMGHQACGAVT 446
PD DY+ +Q + M L G+E ++ + Q G +
Sbjct: 361 PDSF-----RVGPQDYS---YEQFLFNTSM--------LVDYGVEALVDAFSRQPAGRIG 404
Query: 447 LWNYPLWMRNLVAHDINGEDRPNPVDMAALEIYRDRERGVSRYNEFRRNLLMIPISKWED 506
RN+ H ++ +A I R + +NE+R+ M P + +++
Sbjct: 405 ------GGRNIDHHILH---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQE 449
Query: 507 LTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEK 538
LT +KE+ L+E+YG D++ ++ GL EK
Sbjct: 450 LTGEKEMAAELEELYG-DIDALEFYPGLLLEK 480
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 167/452 (36%), Gaps = 118/452 (26%)
Query: 108 RNMPPSTSTYGLLD-PHPTVVATKLLARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDS 166
R+ P T G P ++ + L R+KFI + + N++ + Q H
Sbjct: 126 RDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH--------- 176
Query: 167 KQVELTAPDEEIASGCPLKSFKFFKTKGV--PTSTPSVKTGSLNTRTPWWDASVIYGNNE 224
+FFKT G P T ++ G D IYG+N
Sbjct: 177 ---------------------QFFKTSGKMGPGFTKALGHGV--------DLGHIYGDNL 207
Query: 225 EGMKRVRTFX------------XXXXXXXXXXXXEHDEKWIP------ISGDIRNFWAGF 266
E ++R F H + IP + ++ G
Sbjct: 208 ERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGL 267
Query: 267 TLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTDTL 326
L ++++EHN VCD LK +P DE+L++ ARL+ K+ I+ V+ L L
Sbjct: 268 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFL 326
Query: 327 SAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTEEFASVYRMHSLL 386
++ + L G +F+ R+ + EF +Y H L+
Sbjct: 327 Q--LKFDPELLFGAQFQY-------------------RNR-----IAMEFNQLYHWHPLM 360
Query: 387 PDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQMLVSMGHQACGAVT 446
PD DY+ +Q + M L G+E ++ + Q G +
Sbjct: 361 PDSF-----RVGPQDYS---YEQFLFNTSM--------LVDYGVEALVDAFSRQPAGRIG 404
Query: 447 LWNYPLWMRNLVAHDINGEDRPNPVDMAALEIYRDRERGVSRYNEFRRNLLMIPISKWED 506
RN+ H ++ +A I R + +NE+R+ M P + +++
Sbjct: 405 ------GGRNIDHHILH---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQE 449
Query: 507 LTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEK 538
LT +KE+ L+E+YG D++ ++ GL EK
Sbjct: 450 LTGEKEMAAELEELYG-DIDALEFYPGLLLEK 480
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 167/452 (36%), Gaps = 118/452 (26%)
Query: 108 RNMPPSTSTYGLLD-PHPTVVATKLLARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDS 166
R+ P T G P ++ + L R+KFI + + N++ + Q H
Sbjct: 125 RDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH--------- 175
Query: 167 KQVELTAPDEEIASGCPLKSFKFFKTKGV--PTSTPSVKTGSLNTRTPWWDASVIYGNNE 224
+FFKT G P T ++ G D IYG+N
Sbjct: 176 ---------------------QFFKTSGKMGPGFTKALGHGV--------DLGHIYGDNL 206
Query: 225 EGMKRVRTFX------------XXXXXXXXXXXXEHDEKWIP------ISGDIRNFWAGF 266
E ++R F H + IP + ++ G
Sbjct: 207 ERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGL 266
Query: 267 TLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTDTL 326
L ++++EHN VCD LK +P DE+L++ ARL+ K+ I+ V+ L L
Sbjct: 267 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFL 325
Query: 327 SAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTEEFASVYRMHSLL 386
++ + L G +F+ R+ + EF +Y H L+
Sbjct: 326 Q--LKFDPELLFGAQFQY-------------------RNR-----IAMEFNQLYHWHPLM 359
Query: 387 PDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQMLVSMGHQACGAVT 446
PD DY+ +Q + M L G+E ++ + Q G +
Sbjct: 360 PDSF-----RVGPQDYS---YEQFLFNTSM--------LVDYGVEALVDAFSRQPAGRIG 403
Query: 447 LWNYPLWMRNLVAHDINGEDRPNPVDMAALEIYRDRERGVSRYNEFRRNLLMIPISKWED 506
RN+ H ++ +A I R + +NE+R+ M P + +++
Sbjct: 404 ------GGRNIDHHILH---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQE 448
Query: 507 LTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEK 538
LT +KE+ L+E+YG D++ ++ GL EK
Sbjct: 449 LTGEKEMAAELEELYG-DIDALEFYPGLLLEK 479
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 167/452 (36%), Gaps = 118/452 (26%)
Query: 108 RNMPPSTSTYGLLD-PHPTVVATKLLARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDS 166
R+ P T G P ++ + L R+KFI + + N++ + Q H
Sbjct: 126 RDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH--------- 176
Query: 167 KQVELTAPDEEIASGCPLKSFKFFKTKGV--PTSTPSVKTGSLNTRTPWWDASVIYGNNE 224
+FFKT G P T ++ G D IYG+N
Sbjct: 177 ---------------------QFFKTSGKMGPGFTKALGHGV--------DLGHIYGDNL 207
Query: 225 EGMKRVRTFX------------XXXXXXXXXXXXEHDEKWIP------ISGDIRNFWAGF 266
E ++R F H + IP + ++ G
Sbjct: 208 ERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGL 267
Query: 267 TLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTDTL 326
L ++++EHN VCD LK +P DE+L++ ARL+ K+ I+ V+ L L
Sbjct: 268 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFL 326
Query: 327 SAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTEEFASVYRMHSLL 386
++ + L G +F+ R+ + EF +Y H L+
Sbjct: 327 Q--LKFDPELLFGAQFQY-------------------RNR-----IAMEFNQLYHWHPLM 360
Query: 387 PDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQMLVSMGHQACGAVT 446
PD DY+ +Q + M L G+E ++ + Q G +
Sbjct: 361 PDSF-----RVGPQDYS---YEQFLFNTSM--------LVDYGVEALVDAFSRQPAGRIG 404
Query: 447 LWNYPLWMRNLVAHDINGEDRPNPVDMAALEIYRDRERGVSRYNEFRRNLLMIPISKWED 506
RN+ H ++ +A I R + +NE+R+ M P + +++
Sbjct: 405 ------GGRNIDHHILH---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQE 449
Query: 507 LTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEK 538
LT +KE+ L+E+YG D++ ++ GL EK
Sbjct: 450 LTGEKEMAAELEELYG-DIDALEFYPGLLLEK 480
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 97/452 (21%), Positives = 165/452 (36%), Gaps = 118/452 (26%)
Query: 108 RNMPPSTSTYGLLD-PHPTVVATKLLARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDS 166
R+ P T G P ++ + L R+KFI + + N++ + Q H
Sbjct: 125 RDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH--------- 175
Query: 167 KQVELTAPDEEIASGCPLKSFKFFKTKGV--PTSTPSVKTGSLNTRTPWWDASVIYGNNE 224
+FFKT G P T ++ G D IYG+N
Sbjct: 176 ---------------------QFFKTSGKMGPGFTKALGHGV--------DLGHIYGDNL 206
Query: 225 EGMKRVRTFX------------XXXXXXXXXXXXEHDEKWIP------ISGDIRNFWAGF 266
E ++R F H + IP + ++ G
Sbjct: 207 ERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGL 266
Query: 267 TLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTDTL 326
L ++++EHN VCD LK +P DE+L++ ARL+ K+ I+ V+ L L
Sbjct: 267 MLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFL 325
Query: 327 SAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTEEFASVYRMHSLL 386
++ + L G +F+ R+ + EF +Y H L+
Sbjct: 326 Q--LKFDPELLFGAQFQY-------------------RNR-----IAMEFNQLYHWHPLM 359
Query: 387 PDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQMLVSMGHQACGAVT 446
PD DY+ +M L G+E ++ + Q G +
Sbjct: 360 PDSF-----RVGPQDYSYEQFLFNTSM-----------LVDYGVEALVDAFSRQPAGRIG 403
Query: 447 LWNYPLWMRNLVAHDINGEDRPNPVDMAALEIYRDRERGVSRYNEFRRNLLMIPISKWED 506
RN+ H ++ +A I R + +NE+R+ M P + +++
Sbjct: 404 ------GGRNIDHHILH---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQE 448
Query: 507 LTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEK 538
LT +KE+ L+E+YG D++ ++ GL EK
Sbjct: 449 LTGEKEMAAELEELYG-DIDALEFYPGLLLEK 479
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 61/295 (20%)
Query: 255 ISGDIRNFWAGFTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTI 314
+ ++ G + ++++EHN VCD LK +P+ DE+L++ +RL+ K+
Sbjct: 260 VGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIE 319
Query: 315 DWTVELLKTDTLSAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTE 374
D+ L ++ + L ++F+ +
Sbjct: 320 DYVQHL---SGYHFKLKFDPELLFNQQFQ------------------------YQNRIAS 352
Query: 375 EFASVYRMHSLLPDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQML 434
EF ++Y H LLPD + D QE + K+ L + G+ Q +
Sbjct: 353 EFNTLYHWHPLLPDTFNIED--------------QEYSFKQFL--YNNSILLEHGLTQFV 396
Query: 435 VSMGHQACGAVTLWNYPLWMRNLVAHDINGEDRPNPVD-MAALEIYRDRERGVSRYNEFR 493
S Q G V G + P V +A I + RE NE+R
Sbjct: 397 ESFTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYR 440
Query: 494 RNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEKKIKGFAISET 548
+ + P + +E+LT +KE+ L+ +Y D++ M+L L EK ET
Sbjct: 441 KRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEKPRPDAIFGET 494
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 61/295 (20%)
Query: 255 ISGDIRNFWAGFTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTI 314
+ ++ G + ++++EHN VCD LK +P+ DE+L++ +RL+ K+
Sbjct: 256 VGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIE 315
Query: 315 DWTVELLKTDTLSAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTE 374
D+ L ++ + L ++F+ +
Sbjct: 316 DYVQHL---SGYHFKLKFDPELLFNQQFQ------------------------YQNRIAS 348
Query: 375 EFASVYRMHSLLPDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQML 434
EF ++Y H LLPD + D QE + K+ L + G+ Q +
Sbjct: 349 EFNTLYHWHPLLPDTFNIED--------------QEYSFKQFL--YNNSILLEHGLTQFV 392
Query: 435 VSMGHQACGAVTLWNYPLWMRNLVAHDINGEDRPNPVD-MAALEIYRDRERGVSRYNEFR 493
S Q G V G + P V +A I + RE NE+R
Sbjct: 393 ESFTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYR 436
Query: 494 RNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEKKIKGFAISET 548
+ + P + +E+LT +KE+ L+ +Y D++ M+L L EK ET
Sbjct: 437 KRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEKPRPDAIFGET 490
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 61/295 (20%)
Query: 255 ISGDIRNFWAGFTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTI 314
+ ++ G + ++++EHN VCD LK +P+ DE+L++ +RL+ K+
Sbjct: 256 VGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIE 315
Query: 315 DWTVELLKTDTLSAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTE 374
D+ L ++ + L ++F+ +
Sbjct: 316 DYVQHL---SGYHFKLKFDPELLFNQQFQ------------------------YQNRIAS 348
Query: 375 EFASVYRMHSLLPDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQML 434
EF ++Y H LLPD + D QE + K+ L + G+ Q +
Sbjct: 349 EFNTLYHWHPLLPDTFNIED--------------QEYSFKQFL--YNNSILLEHGLTQFV 392
Query: 435 VSMGHQACGAVTLWNYPLWMRNLVAHDINGEDRPNPVD-MAALEIYRDRERGVSRYNEFR 493
S Q G V G + P V +A I + RE NE+R
Sbjct: 393 ESFTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYR 436
Query: 494 RNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEKKIKGFAISET 548
+ + P + +E+LT +KE+ L+ +Y D++ M+L L EK ET
Sbjct: 437 KRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEKPRPDAIFGET 490
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 61/295 (20%)
Query: 255 ISGDIRNFWAGFTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTI 314
+ ++ G + ++++EHN VCD LK +P+ DE+L++ +RL+ K+
Sbjct: 261 VGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIE 320
Query: 315 DWTVELLKTDTLSAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTE 374
D+ L ++ + L ++F+ +
Sbjct: 321 DYVQHL---SGYHFKLKFDPELLFNQQFQ------------------------YQNRIAS 353
Query: 375 EFASVYRMHSLLPDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQML 434
EF ++Y H LLPD + D QE + K+ L + G+ Q +
Sbjct: 354 EFNTLYHWHPLLPDTFNIED--------------QEYSFKQFL--YNNSILLEHGLTQFV 397
Query: 435 VSMGHQACGAVTLWNYPLWMRNLVAHDINGEDRPNPVD-MAALEIYRDRERGVSRYNEFR 493
S Q G V G + P V +A I + RE NE+R
Sbjct: 398 ESFTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYR 441
Query: 494 RNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEKKIKGFAISET 548
+ + P + +E+LT +KE+ L+ +Y D++ M+L L EK ET
Sbjct: 442 KRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEKPRPDAIFGET 495
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 61/295 (20%)
Query: 255 ISGDIRNFWAGFTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTI 314
+ ++ G + ++++EHN VCD LK +P+ DE+L++ +RL+ K+
Sbjct: 256 VGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIE 315
Query: 315 DWTVELLKTDTLSAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTE 374
D+ L ++ + L ++F+ +
Sbjct: 316 DYVQHL---SGYHFKLKFDPELLFNQQFQ------------------------YQNRIAS 348
Query: 375 EFASVYRMHSLLPDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQML 434
EF ++Y H LLPD + D QE + K+ L + G+ Q +
Sbjct: 349 EFNTLYHWHPLLPDTFNIED--------------QEYSFKQFL--YNNSILLEHGLTQFV 392
Query: 435 VSMGHQACGAVTLWNYPLWMRNLVAHDINGEDRPNPVD-MAALEIYRDRERGVSRYNEFR 493
S Q G V G + P V +A I + RE NE+R
Sbjct: 393 ESFTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYR 436
Query: 494 RNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEKKIKGFAISET 548
+ + P + +E+LT +KE+ L+ +Y D++ M+L L EK ET
Sbjct: 437 KRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEKPRPDAIFGET 490
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 61/295 (20%)
Query: 255 ISGDIRNFWAGFTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTI 314
+ ++ G + ++++EHN VCD LK +P+ DE+L++ +RL+ K+
Sbjct: 273 VGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIE 332
Query: 315 DWTVELLKTDTLSAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTE 374
D+ L ++ + L ++F+ +
Sbjct: 333 DYVQHL---SGYHFKLKFDPELLFNQQFQ------------------------YQNRIAS 365
Query: 375 EFASVYRMHSLLPDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQML 434
EF ++Y H LLPD + D QE + K+ L + G+ Q +
Sbjct: 366 EFNTLYHWHPLLPDTFNIED--------------QEYSFKQFL--YNNSILLEHGLTQFV 409
Query: 435 VSMGHQACGAVTLWNYPLWMRNLVAHDINGEDRPNPVD-MAALEIYRDRERGVSRYNEFR 493
S Q G V G + P V +A I + RE NE+R
Sbjct: 410 ESFTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYR 453
Query: 494 RNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEKKIKGFAISET 548
+ + P + +E+LT +KE+ L+ +Y D++ M+L L EK ET
Sbjct: 454 KRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEKPRPDAIFGET 507
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 61/295 (20%)
Query: 255 ISGDIRNFWAGFTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTI 314
+ ++ G + ++++EHN VCD LK +P+ DE+L++ +RL+ K+
Sbjct: 260 VGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIE 319
Query: 315 DWTVELLKTDTLSAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTE 374
D+ L ++ + L ++F+ +
Sbjct: 320 DYVQHL---SGYHFKLKFDPELLFNQQFQ------------------------YQNRIAS 352
Query: 375 EFASVYRMHSLLPDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQML 434
EF ++Y H LLPD + D QE + K+ L + G+ Q +
Sbjct: 353 EFNTLYHWHPLLPDTFNIED--------------QEYSFKQFL--YNNSILLEHGLTQFV 396
Query: 435 VSMGHQACGAVTLWNYPLWMRNLVAHDINGEDRPNPVD-MAALEIYRDRERGVSRYNEFR 493
S Q G V G + P V +A I + RE NE+R
Sbjct: 397 ESFTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYR 440
Query: 494 RNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEKKIKGFAISET 548
+ + P + +E+LT +KE+ L+ +Y D++ M+L L EK ET
Sbjct: 441 KRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEKPRPDAIFGET 494
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 111/285 (38%), Gaps = 61/285 (21%)
Query: 255 ISGDIRNFWAGFTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTI 314
+ ++ G + ++++EHN VCD LK +P+ DE+L++ +RL+ K+
Sbjct: 261 VGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIE 320
Query: 315 DWTVELLKTDTLSAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTE 374
D+ L ++ + L ++F+ +
Sbjct: 321 DYVQHL---SGYHFKLKFDPELLFNQQFQ------------------------YQNRIAS 353
Query: 375 EFASVYRMHSLLPDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQML 434
EF ++Y H LLPD + D QE + K+ L + G+ Q +
Sbjct: 354 EFNTLYHWHPLLPDTFNIED--------------QEYSFKQFL--YNNSILLEHGLTQFV 397
Query: 435 VSMGHQACGAVTLWNYPLWMRNLVAHDINGEDRPNPVD-MAALEIYRDRERGVSRYNEFR 493
S Q G V G + P V +A I + RE NE+R
Sbjct: 398 ESFTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYR 441
Query: 494 RNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEK 538
+ + P + +E+LT +KE+ L+ +Y D++ M+L L EK
Sbjct: 442 KRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 485
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 61/295 (20%)
Query: 255 ISGDIRNFWAGFTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTI 314
+ ++ G + ++++EHN VCD LK +P+ DE+L++ +RL+ K+
Sbjct: 262 VGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIE 321
Query: 315 DWTVELLKTDTLSAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTE 374
D+ L ++ + L ++F+ +
Sbjct: 322 DYVQHL---SGYHFKLKFDPELLFNQQFQ------------------------YQNRIAS 354
Query: 375 EFASVYRMHSLLPDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQML 434
EF ++Y H LLPD + D QE + K+ L + G+ Q +
Sbjct: 355 EFNTLYHWHPLLPDTFNIED--------------QEYSFKQFL--YNNSILLEHGLTQFV 398
Query: 435 VSMGHQACGAVTLWNYPLWMRNLVAHDINGEDRPNPVD-MAALEIYRDRERGVSRYNEFR 493
S Q G V G + P V +A I + RE NE+R
Sbjct: 399 ESFTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYR 442
Query: 494 RNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEKKIKGFAISET 548
+ + P + +E+LT +KE+ L+ +Y D++ M+L L EK ET
Sbjct: 443 KRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEKPRPDAIFGET 496
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 61/295 (20%)
Query: 255 ISGDIRNFWAGFTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTI 314
+ ++ G + ++++EHN VCD LK +P+ DE+L++ +RL+ K+
Sbjct: 279 VGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIE 338
Query: 315 DWTVELLKTDTLSAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTE 374
D+ L ++ + L ++F+ +
Sbjct: 339 DYVQHL---SGYHFKLKFDPELLFNQQFQ------------------------YQNRIAS 371
Query: 375 EFASVYRMHSLLPDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQML 434
EF ++Y H LLPD + D QE + K+ L + G+ Q +
Sbjct: 372 EFNTLYHWHPLLPDTFNIED--------------QEYSFKQFL--YNNSILLEHGLTQFV 415
Query: 435 VSMGHQACGAVTLWNYPLWMRNLVAHDINGEDRPNPVD-MAALEIYRDRERGVSRYNEFR 493
S Q G V G + P V +A I + RE NE+R
Sbjct: 416 ESFTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYR 459
Query: 494 RNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEKKIKGFAISET 548
+ + P + +E+LT +KE+ L+ +Y D++ M+L L EK ET
Sbjct: 460 KRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEKPRPDAIFGET 513
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 96/452 (21%), Positives = 166/452 (36%), Gaps = 118/452 (26%)
Query: 108 RNMPPSTSTYGLLD-PHPTVVATKLLARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDS 166
R+ P T G P ++ + L R+KFI + + N++ + Q H
Sbjct: 125 RDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH--------- 175
Query: 167 KQVELTAPDEEIASGCPLKSFKFFKTKGV--PTSTPSVKTGSLNTRTPWWDASVIYGNNE 224
+FFKT G P T ++ G D IYG+N
Sbjct: 176 ---------------------QFFKTSGKMGPGFTKALGHGV--------DLGHIYGDNL 206
Query: 225 EGMKRVRTFX------------XXXXXXXXXXXXEHDEKWIP------ISGDIRNFWAGF 266
E ++R F H + IP + ++ G
Sbjct: 207 ERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGL 266
Query: 267 TLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTDTL 326
L ++++EH VCD LK +P DE+L++ A+L+ K+ I+ V+ L L
Sbjct: 267 MLYATIWLREHQRVCDLLKAEHPTWGDEQLFQTAKLILIGETIKI-VIEEYVQQLSGYFL 325
Query: 327 SAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTEEFASVYRMHSLL 386
++ + L G +F+ R+ + EF +Y H L+
Sbjct: 326 Q--LKFDPELLFGAQFQY-------------------RNR-----IAMEFNQLYHWHPLM 359
Query: 387 PDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQMLVSMGHQACGAVT 446
PD DY+ +Q + M L G+E ++ + Q G +
Sbjct: 360 PDSF-----RVGPQDYS---YEQFLFNTSM--------LVDYGVEALVDAFSRQPAGRIG 403
Query: 447 LWNYPLWMRNLVAHDINGEDRPNPVDMAALEIYRDRERGVSRYNEFRRNLLMIPISKWED 506
RN+ H ++ +A I R + +NE+R+ M P + +++
Sbjct: 404 ------GGRNIDHHILH---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQE 448
Query: 507 LTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEK 538
LT +KE+ L+E+YG D++ ++ GL EK
Sbjct: 449 LTGEKEMAAELEELYG-DIDALEFYPGLLLEK 479
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 112/295 (37%), Gaps = 61/295 (20%)
Query: 255 ISGDIRNFWAGFTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTI 314
+ ++ G + ++++EH VCD LK +P+ DE+L++ ++L+ K+
Sbjct: 256 VGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIE 315
Query: 315 DWTVELLKTDTLSAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTE 374
D+ L ++ + L ++F+ +
Sbjct: 316 DYVQHL---SGYHFKLKFDPELLFNQQFQ------------------------YQNRIAS 348
Query: 375 EFASVYRMHSLLPDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQML 434
EF ++Y H LLPD + D QE + K+ L + G+ Q +
Sbjct: 349 EFNTLYHWHPLLPDTFNIED--------------QEYSFKQFL--YNNSILLEHGLTQFV 392
Query: 435 VSMGHQACGAVTLWNYPLWMRNLVAHDINGEDRPNPVD-MAALEIYRDRERGVSRYNEFR 493
S Q G V G + P V +A I + RE NE+R
Sbjct: 393 ESFTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYR 436
Query: 494 RNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEKKIKGFAISET 548
+ + P + +E+LT +KE+ L+ +Y D++ M+L L EK ET
Sbjct: 437 KRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEKPRPDAIFGET 490
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 112/295 (37%), Gaps = 61/295 (20%)
Query: 255 ISGDIRNFWAGFTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTI 314
+ ++ G + ++++EH VCD LK +P+ DE+L++ ++L+ K+
Sbjct: 256 VGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIE 315
Query: 315 DWTVELLKTDTLSAGMRINWYGLLGKKFKDLFGHICGPILSGLVGLKKPRDHGVPYSLTE 374
D+ L ++ + L ++F+ +
Sbjct: 316 DYVQHL---SGYHFKLKFDPELLFNQQFQ------------------------YQNRIAS 348
Query: 375 EFASVYRMHSLLPDKLILRDINSTKSDYACPPVQQEVAMKEMAGKEGERRLSKIGMEQML 434
EF ++Y H LLPD + D QE + K+ L + G+ Q +
Sbjct: 349 EFNTLYHWHPLLPDTFNIED--------------QEYSFKQFL--YNNSILLEHGLTQFV 392
Query: 435 VSMGHQACGAVTLWNYPLWMRNLVAHDINGEDRPNPVD-MAALEIYRDRERGVSRYNEFR 493
S Q G V G + P V +A I + RE NE+R
Sbjct: 393 ESFTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYR 436
Query: 494 RNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEKKIKGFAISET 548
+ + P + +E+LT +KE+ L+ +Y D++ M+L L EK ET
Sbjct: 437 KRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEKPRPDAIFGET 490
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 25/152 (16%)
Query: 189 FFKT-KGVPTSTPSVKTGSLNTRTPWWDASVIYGNNEEGMKRVRTFXXXXXXXXXXXXXE 247
FF++ P S +++ +N T + DAS++YG+ E + +R +
Sbjct: 34 FFRSCPACPGSNITIRN-QINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQ 92
Query: 248 ------------HDEKWIPI--SGDIRNFWAG---------FTLLQALFVKEHNAVCDKL 284
HD+ + S I F AG T + L ++EHN + +L
Sbjct: 93 DNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATEL 152
Query: 285 KDHYPDLDDEKLYRHARLVTSAVIAKVHTIDW 316
K P D E+LY+ AR + A++ + D+
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDY 184
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 25/152 (16%)
Query: 189 FFKT-KGVPTSTPSVKTGSLNTRTPWWDASVIYGNNEEGMKRVRTFXXXXXXXXXXXXXE 247
FF++ P S +++ +N T + DAS++YG+ E + +R +
Sbjct: 34 FFRSXPACPGSNITIRN-QINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQ 92
Query: 248 ------------HDEKWIPI--SGDIRNFWAG---------FTLLQALFVKEHNAVCDKL 284
HD+ + S I F AG T + L ++EHN + +L
Sbjct: 93 DNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATEL 152
Query: 285 KDHYPDLDDEKLYRHARLVTSAVIAKVHTIDW 316
K P D E+LY+ AR + A++ + D+
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDY 184
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 25/152 (16%)
Query: 189 FFKT-KGVPTSTPSVKTGSLNTRTPWWDASVIYGNNEEGMKRVRTFXXXXXXXXXXXXXE 247
FF++ P S +++ +N T + DAS++YG+ E + +R +
Sbjct: 34 FFRSXPACPGSNITIRN-QINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQ 92
Query: 248 ------------HDEKWIPI--SGDIRNFWAG---------FTLLQALFVKEHNAVCDKL 284
HD+ + S I F AG T + L ++EHN + +L
Sbjct: 93 DNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATEL 152
Query: 285 KDHYPDLDDEKLYRHARLVTSAVIAKVHTIDW 316
K P D E+LY+ AR + A++ + D+
Sbjct: 153 KSLNPRWDGERLYQEARKIVGAMVQIITYRDY 184
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 25/165 (15%)
Query: 185 KSFKFFKTKGVPTSTP--SVKTGSLNTRTPWWDASVIYGNNEEGMKRVRTFXXXXXXXXX 242
K FF+ V + P S+ +N+ T + DAS++YG+ R+R
Sbjct: 156 KCMPFFRAGFVCPTPPYQSLARDQINSVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAV 215
Query: 243 XXXX-EHDEKWIPI-------------SGDIRNFWAG---------FTLLQALFVKEHNA 279
+H + P + + F AG + L ++EHN
Sbjct: 216 NQEAWDHGLAYPPFNNMKPSPCEFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNR 275
Query: 280 VCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTD 324
+ +LK P D EKLY+ AR + A I + D+ +L ++
Sbjct: 276 LARELKRLNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 25/165 (15%)
Query: 185 KSFKFFKTKGVPTSTP--SVKTGSLNTRTPWWDASVIYGNNEEGMKRVRTFXXXXXXXXX 242
K FF+ V + P S+ +N+ T + DAS++YG+ R+R
Sbjct: 156 KCMPFFRAGFVCPTPPYQSLARDQINSVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAV 215
Query: 243 XXXX-EHDEKWIPI-------------SGDIRNFWAG---------FTLLQALFVKEHNA 279
+H + P + + F AG + L ++EHN
Sbjct: 216 NQEAWDHGLAYPPFNNMKPSPCEFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNR 275
Query: 280 VCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTD 324
+ +LK P D EKLY+ AR + A I + D+ +L ++
Sbjct: 276 LARELKRLNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 25/165 (15%)
Query: 185 KSFKFFKTKGVPTSTP--SVKTGSLNTRTPWWDASVIYGNNEEGMKRVRTFXXXXXXXXX 242
K FF+ V + P S+ +N T + DAS++YG+ R+R
Sbjct: 156 KCMPFFRAGFVCPTPPYQSLARDQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAV 215
Query: 243 XXXX-EHDEKWIPI-------------SGDIRNFWAG---------FTLLQALFVKEHNA 279
+H + P + + F AG + L ++EHN
Sbjct: 216 NQEAWDHGLAYPPFNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNR 275
Query: 280 VCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTD 324
+ +LK P D E LY+ AR + A I + D+ +L ++
Sbjct: 276 LARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLGSE 320
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 25/165 (15%)
Query: 185 KSFKFFKTKGVPTSTP--SVKTGSLNTRTPWWDASVIYGNNEEGMKRVRTFXXXXXXXXX 242
K FF+ V + P S+ +N T + DAS++YG+ R+R
Sbjct: 156 KCMPFFRAGFVCPTPPYQSLARDQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAV 215
Query: 243 XXXX-EHDEKWIPI-------------SGDIRNFWAG---------FTLLQALFVKEHNA 279
+H + P + + F AG + L ++EHN
Sbjct: 216 NQEAWDHGLAYPPFNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNR 275
Query: 280 VCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTD 324
+ +LK P D E LY+ AR + A I + D+ +L ++
Sbjct: 276 LARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLGSE 320
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 112/311 (36%), Gaps = 73/311 (23%)
Query: 80 EEICYRTADGTCNHPSDDTIGSQGTFFGRNMPPS--------------TSTYGLLDPHPT 125
E YRT G CN+ +G+ R +P + G P
Sbjct: 5 ENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAR 64
Query: 126 VVATKL---LARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDSKQVELTAPDEEIASGC 182
V+ K+ L + +D + +++ W Q + HD L+ + + EL + +E + C
Sbjct: 65 EVSNKIVGYLDEEGVLDQNR--SLLFMQWGQIVDHD----LDFAPETELGS-NEHSKTQC 117
Query: 183 -----------PL-------------KSFKFFKTKGVPTSTP--SVKTGSLNTRTPWWDA 216
P+ K FF+ V + P S+ +N T + DA
Sbjct: 118 EEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDA 177
Query: 217 SVIYGNNEEGMKRVRTFXXXXXXXXXXXXX-EHDEKWIPI-------------SGDIRNF 262
S++YG+ R+R +H ++P + + F
Sbjct: 178 SLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCF 237
Query: 263 WAG-FTLLQALFV--------KEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHT 313
AG F + + + +EHN + +LK P + EKLY+ AR + A I +
Sbjct: 238 LAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITF 297
Query: 314 IDWTVELLKTD 324
D+ +L ++
Sbjct: 298 RDYLPIVLGSE 308
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 112/311 (36%), Gaps = 73/311 (23%)
Query: 80 EEICYRTADGTCNHPSDDTIGSQGTFFGRNMPPS--------------TSTYGLLDPHPT 125
E YRT G CN+ +G+ R +P + G P
Sbjct: 5 ENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAR 64
Query: 126 VVATKL---LARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDSKQVELTAPDEEIASGC 182
V+ K+ L + +D + +++ W Q + HD L+ + + EL + +E + C
Sbjct: 65 EVSNKIVGYLDEEGVLDQNR--SLLFMQWGQIVDHD----LDFAPETELGS-NEHSKTQC 117
Query: 183 -----------PL-------------KSFKFFKTKGVPTSTP--SVKTGSLNTRTPWWDA 216
P+ K FF+ V + P S+ +N T + DA
Sbjct: 118 EEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDA 177
Query: 217 SVIYGNNEEGMKRVRTFXXXXXXXXXXXXX-EHDEKWIPI-------------SGDIRNF 262
S++YG+ R+R +H ++P + + F
Sbjct: 178 SLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCF 237
Query: 263 WAG-FTLLQALFV--------KEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHT 313
AG F + + + +EHN + +LK P + EKLY+ AR + A I +
Sbjct: 238 LAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITF 297
Query: 314 IDWTVELLKTD 324
D+ +L ++
Sbjct: 298 RDYLPIVLGSE 308
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 110/311 (35%), Gaps = 73/311 (23%)
Query: 80 EEICYRTADGTCNHPSDDTIGSQGTFFGRNMPPS--------------TSTYGLLDPHPT 125
E YRT G CN+ +G+ R +P + G P
Sbjct: 17 ENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAR 76
Query: 126 VVATKL---LARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDSKQVELTAPDEEIASGC 182
V+ K+ L + +D + +++ W Q + HD L+ + + EL + +E + C
Sbjct: 77 EVSNKIVGYLDEEGVLDQNR--SLLFMQWGQIVDHD----LDFAPETELGS-NEHSKTQC 129
Query: 183 -----------PL-------------KSFKFFKTKGVPTSTP--SVKTGSLNTRTPWWDA 216
P+ K FF+ V + P S+ +N T + DA
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDA 189
Query: 217 SVIYGNNEEGMKRVRTFXXXXXXXXXXXXX-EHDEKWIPI-------------SGDIRNF 262
S++YG+ R+R +H ++P + + F
Sbjct: 190 SLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCF 249
Query: 263 WAG---------FTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHT 313
AG L ++EHN + +LK P + EKLY+ AR + A I +
Sbjct: 250 LAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITF 309
Query: 314 IDWTVELLKTD 324
D+ +L ++
Sbjct: 310 RDYLPIVLGSE 320
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 110/311 (35%), Gaps = 73/311 (23%)
Query: 80 EEICYRTADGTCNHPSDDTIGSQGTFFGRNMPPS--------------TSTYGLLDPHPT 125
E YRT G CN+ +G+ R +P + G P
Sbjct: 17 ENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAR 76
Query: 126 VVATKL---LARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDSKQVELTAPDEEIASGC 182
V+ K+ L + +D + +++ W Q + HD L+ + + EL + +E + C
Sbjct: 77 EVSNKIVGYLDEEGVLDQNR--SLLFMQWGQIVDHD----LDFAPETELGS-NEHSKTQC 129
Query: 183 -----------PL-------------KSFKFFKTKGVPTSTP--SVKTGSLNTRTPWWDA 216
P+ K FF+ V + P S+ +N T + DA
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDA 189
Query: 217 SVIYGNNEEGMKRVRTFXXXXXXXXXXXXX-EHDEKWIPI-------------SGDIRNF 262
S++YG+ R+R +H ++P + + F
Sbjct: 190 SLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCF 249
Query: 263 WAG---------FTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHT 313
AG L ++EHN + +LK P + EKLY+ AR + A I +
Sbjct: 250 LAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITF 309
Query: 314 IDWTVELLKTD 324
D+ +L ++
Sbjct: 310 RDYLPIVLGSE 320
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 110/311 (35%), Gaps = 73/311 (23%)
Query: 80 EEICYRTADGTCNHPSDDTIGSQGTFFGRNMPPS--------------TSTYGLLDPHPT 125
E YRT G CN+ +G+ R +P + G P
Sbjct: 17 ENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAR 76
Query: 126 VVATKL---LARKKFIDNGKQFNMIACSWIQFMIHDWTDHLEDSKQVELTAPDEEIASGC 182
V+ K+ L + +D + +++ W Q + HD L+ + + EL + +E + C
Sbjct: 77 EVSNKIVGYLDEEGVLDQNR--SLLFMQWGQIVDHD----LDFAPETELGS-NEHSKTQC 129
Query: 183 -----------PL-------------KSFKFFKTKGVPTSTP--SVKTGSLNTRTPWWDA 216
P+ K FF+ V + P S+ +N T + DA
Sbjct: 130 EEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDA 189
Query: 217 SVIYGNNEEGMKRVRTFXXXXXXXXXXXXX-EHDEKWIPI-------------SGDIRNF 262
S++YG+ R+R +H ++P + + F
Sbjct: 190 SLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCF 249
Query: 263 WAG---------FTLLQALFVKEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHT 313
AG L ++EHN + +LK P + EKLY+ AR + A I +
Sbjct: 250 LAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITF 309
Query: 314 IDWTVELLKTD 324
D+ +L ++
Sbjct: 310 RDYLPIVLGSE 320
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 25/165 (15%)
Query: 185 KSFKFFKTKGVPTSTP--SVKTGSLNTRTPWWDASVIYGNNEEGMKRVRTFXXXXXXXXX 242
K FF+ V + P S+ +N T + DAS++YG+ R++
Sbjct: 156 KCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPSLASRLQNLSSPLGLMAV 215
Query: 243 XXXX-EHDEKWIPI-------------SGDIRNFWAG---------FTLLQALFVKEHNA 279
+H ++P + + F AG L ++EHN
Sbjct: 216 NQEAWDHGLAYLPFNNRKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNR 275
Query: 280 VCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTD 324
+ +LK P D EKLY+ AR + A + + D+ +L ++
Sbjct: 276 LARELKKLNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLGSE 320
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 25/165 (15%)
Query: 185 KSFKFFKTKGVPTSTP--SVKTGSLNTRTPWWDASVIYGNNEEGMKRVRTFXXXXXXXXX 242
K FF+ V + P S+ +N T + DAS++YG+ R++
Sbjct: 156 KCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPXLASRLQNLSSPLGLMAV 215
Query: 243 XXXX-EHDEKWIPI-------------SGDIRNFWAG---------FTLLQALFVKEHNA 279
+H ++P + + F AG L ++EHN
Sbjct: 216 NQEAWDHGLAYLPFNNRKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNR 275
Query: 280 VCDKLKDHYPDLDDEKLYRHARLVTSAVIAKVHTIDWTVELLKTD 324
+ +LK P D EKLY+ AR + A + + D+ +L ++
Sbjct: 276 LARELKKLNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLGSE 320
>pdb|3FZZ|A Chain A, Structure Of Grc
pdb|3FZZ|B Chain B, Structure Of Grc
Length = 227
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 433 MLVSMGHQACGAVTLWNYPLWMRNLVAH-DINGEDRPNPVDMAALEIYRDRERGVSRYNE 491
M V++G A + + + H D N +DR N + + L R R V N
Sbjct: 51 MTVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNL 110
Query: 492 FRRNLLMIP-----ISKWEDLTDDKEVIKVLQEV 520
RRN + P ++ W +T D E K L EV
Sbjct: 111 PRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEV 144
>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
Length = 227
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 461 DINGEDRPNPVDMAALEIYRDRERGVSRYNEFRRNLLMIP-----ISKWEDLTDDKEVIK 515
D N +DR N + + L R R V N RRN + P ++ W +T D E K
Sbjct: 80 DYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPK 139
Query: 516 VLQEV 520
L EV
Sbjct: 140 TLHEV 144
>pdb|1JRM|A Chain A, Nmr Structure Of Mth0637. Ontario Centre For Structural
Proteomics Target Mth0637_1_104; Northeast Structural
Genomics Target Tt135
Length = 104
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 485 GVSRYNEFRRNLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMDLQVGLHAEKKIKGFA 544
G+ YNE+R+ + + S + ++E+IK E +G DVE + Q +I+G
Sbjct: 28 GIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETFGRDVEIVSGQKSRQKTIRIQGMG 87
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 472 DMAALEIYRDRE-RGVSRYNEFRR-NLLMIPISKWEDLTDDKEVIKVLQEVYGDDVEKMD 529
D A+ IY D G+ F R + L+IP + DLTD G + +
Sbjct: 16 DAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAA 75
Query: 530 LQVGLHAEKK----IKGFAISETAFFIFLLIASRR 560
+ GLHA+ G A +T F I L + RR
Sbjct: 76 RESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRR 110
>pdb|2PGG|A Chain A, Crystal Structure Of A Birnavirus (Ibdv) Rna-Dependent Rna
Polymerase Vp1
Length = 774
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 418 GKEGERRLSKIGMEQMLVSMGHQACGAVTLWNYPL 452
G E + SK+G+EQ + ++A V WNYPL
Sbjct: 572 GVENKSLKSKVGIEQAYKVVRYEALRLVGGWNYPL 606
>pdb|2PUS|A Chain A, Unprecedented Activation Mechanism Of A Non-Canonical
Rna-Dependent Rna Polymerase
pdb|2QJ1|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp1
Polymerase Incubated With An Oligopeptide Mimicking The
Vp3 C-Terminus
pdb|2R70|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp1
Polymerase, Cocrystallized With An Oligopeptide
Mimicking The Vp3 C-Terminus.
pdb|2R72|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp1
Polymerase, Incubated With Mg2+ Ion
Length = 852
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 418 GKEGERRLSKIGMEQMLVSMGHQACGAVTLWNYPL 452
G E + SK+G+EQ + ++A V WNYPL
Sbjct: 609 GVENKSLKSKVGIEQAYKVVRYEALRLVGGWNYPL 643
>pdb|3JSK|A Chain A, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|B Chain B, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|C Chain C, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|D Chain D, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|E Chain E, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|F Chain F, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|G Chain G, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|H Chain H, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|I Chain I, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|J Chain J, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|K Chain K, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|L Chain L, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|M Chain M, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|N Chain N, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|O Chain O, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|P Chain P, Thiazole Synthase From Neurospora Crassa
Length = 344
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 263 WAGFTLLQALFV-KEHNAVCDKLKDHYPDLDDEKLYRHARLVTSAVIAKV 311
W G L A+ + K + D++ Y D D + +HA L TS V++KV
Sbjct: 121 WLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHAALFTSTVLSKV 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,519,439
Number of Sequences: 62578
Number of extensions: 824944
Number of successful extensions: 1829
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1688
Number of HSP's gapped (non-prelim): 117
length of query: 633
length of database: 14,973,337
effective HSP length: 105
effective length of query: 528
effective length of database: 8,402,647
effective search space: 4436597616
effective search space used: 4436597616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)