BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006741
(633 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NJX|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant
H210a
Length = 508
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 91/243 (37%), Gaps = 38/243 (15%)
Query: 368 WERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKY-SANITVRAGSNINL 426
W D+ Q+WT + G F+ ++ G Y + + G+Y ++++TV AGS
Sbjct: 277 WYNDAA--QYWTYTSSSGSFTSPAMKPGTYTMVYY----QGEYAVATSSVTVSAGSTTTK 330
Query: 427 GVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDL 486
+ + G T+++IG D P + ANQL HP R W
Sbjct: 331 NI--SGSVKTGTTIFKIGEWDGQ------PTGFRNAANQLRM-HPSDSRMSS-W------ 374
Query: 487 YRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALA 546
L YTVG S A F V + V N P T + G TL++
Sbjct: 375 ---GPLTYTVGSS--ALTDFPMAVFKSVNN----PVTIKFTATSAQ---TGAATLRIGTT 422
Query: 547 -SATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNT 605
S N+ P A T + R GL +Y + +PS + G NT
Sbjct: 423 LSFAGGRPQATINSYTGSAP--AAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNT 480
Query: 606 IYL 608
I +
Sbjct: 481 ITI 483
>pdb|1NKG|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus
Length = 508
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 91/243 (37%), Gaps = 38/243 (15%)
Query: 368 WERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKY-SANITVRAGSNINL 426
W D+ Q+WT + G F+ ++ G Y + + G+Y ++++TV AGS
Sbjct: 277 WYNDAA--QYWTYTSSSGSFTSPAMKPGTYTMVYY----QGEYAVATSSVTVSAGSTTTK 330
Query: 427 GVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDL 486
+ + G T+++IG D P + ANQL HP R W
Sbjct: 331 NI--SGSVKTGTTIFKIGEWDGQ------PTGFRNAANQLRM-HPSDSRMSS-W------ 374
Query: 487 YRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALA 546
L YTVG S A F V + V N P T + G TL++
Sbjct: 375 ---GPLTYTVGSS--ALTDFPMAVFKSVNN----PVTIKFTATSAQ---TGAATLRIGTT 422
Query: 547 -SATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNT 605
S N+ P A T + R GL +Y + +PS + G NT
Sbjct: 423 LSFAGGRPQATINSYTGSAP--AAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNT 480
Query: 606 IYL 608
I +
Sbjct: 481 ITI 483
>pdb|2XHN|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|2XHN|B Chain B, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|3NJV|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Substrate Complex
Length = 508
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 91/243 (37%), Gaps = 38/243 (15%)
Query: 368 WERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKY-SANITVRAGSNINL 426
W D+ Q+WT + G F+ ++ G Y + + G+Y ++++TV AGS
Sbjct: 277 WYNDAA--QYWTYTSSSGSFTSPAMKPGTYTMVYY----QGEYAVATSSVTVSAGSTTTK 330
Query: 427 GVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDL 486
+ + G T+++IG D P + ANQL HP R W
Sbjct: 331 NI--SGSVKTGTTIFKIGEWDGQ------PTGFRNAANQLRM-HPSDSRMSS-W------ 374
Query: 487 YRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALA 546
L YTVG S A F V + V N P T + G TL++
Sbjct: 375 ---GPLTYTVGSS--ALTDFPMAVFKSVNN----PVTIKFTATSAQ---TGAATLRIGTT 422
Query: 547 -SATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNT 605
S N+ P A T + R GL +Y + +PS + G NT
Sbjct: 423 LSFAGGRPQATINSYTGSAP--AAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNT 480
Query: 606 IYL 608
I +
Sbjct: 481 ITI 483
>pdb|1F9A|A Chain A, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|B Chain B, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|C Chain C, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|D Chain D, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|E Chain E, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|F Chain F, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
Length = 168
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 231 PSDEFRSGGPNKQDLTSHVGPVVL--SMFTSTHYAGKEINTEFRNGEPWKKVFGPALV 286
P D SG P + L G V MF Y+G EI NGE W+ + A+V
Sbjct: 91 PFDIVYSGNPLVRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLNGEKWEHLVPKAVV 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,648,950
Number of Sequences: 62578
Number of extensions: 1011297
Number of successful extensions: 1957
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1953
Number of HSP's gapped (non-prelim): 5
length of query: 633
length of database: 14,973,337
effective HSP length: 105
effective length of query: 528
effective length of database: 8,402,647
effective search space: 4436597616
effective search space used: 4436597616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)