BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006741
(633 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE
PE=1 SV=1
Length = 578
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 155/624 (24%), Positives = 255/624 (40%), Gaps = 92/624 (14%)
Query: 17 VMDNGLVQVTLS--NPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKL 74
+DNGL++V EV N I + + D + + +Y G ++
Sbjct: 39 TLDNGLLKVRFGADGSAKEVWKGGTNLISRLSGAARDPDKNRSFYLDYYS----GGVNEF 94
Query: 75 IATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEG 134
+ +VI Q +QV +++ N LR ++ IM R VSG Y Y +
Sbjct: 95 VPERLEVIKQTPDQVHLAYIDDQNGKLR-------LEYHLIMTRDVSGLYSYVVAANTGS 147
Query: 135 WPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAVLLTDPINPD 194
P V + ++R V++ + + N +R P+ D P E L D
Sbjct: 148 AP-VTVSELRNVYRFDATRLD--TLFNSIRRGTPLLYDELEQLPKVQDETWRLPD----- 199
Query: 195 LRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPNKQDLTSHVGPVVL 254
G V KY ++ ++ R G + + G WM+ S E+ SG KQ+L H ++L
Sbjct: 200 --GSVYSKYDFAGYQRESRYWGVMGNG--YGAWMVPASGEYYSGDALKQELLVHQDAIIL 255
Query: 255 SMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMVEVRK 314
+ T +H+ ++ + ++K++GP L+Y+N + E L D R+ E
Sbjct: 256 NYLTGSHFGTPDMVAQ----PGFEKLYGPWLLYINQGNDRE----LVADVSRRAEHERAS 307
Query: 315 WPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKG 374
WPY + + +P+ QR V G+LR ++ + + +++ + G
Sbjct: 308 WPYRWLDDARYPR--QRATVSGRLRT------------EAPHATVVLNSSAENFDIQTTG 353
Query: 375 YQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRA-GSNINLGVLVYEP 433
Y F + N+ G FS+ NV G+Y L A+ G A TVR G LG +
Sbjct: 354 YLFSARTNRDGRFSLSNVPPGEYRLSAYADGGT-QIGLLAQQTVRVEGKKTRLGQIDARQ 412
Query: 434 PRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLE 493
P P W IG DR A EF D P ++R W+ V DL
Sbjct: 413 P--APLAWAIGQADRRADEFRFGD------------KPRQYR----WQTEVPA----DLT 450
Query: 494 YTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDSDL 553
+ +G S KDW++A +P +W I+F + YTL +A+A+A+++ +
Sbjct: 451 FEIGKSRERKDWYYAQT---------QPGSWHILFNTR--TPEQPYTLNIAIAAASNNGM 499
Query: 554 HVRFNNPN----ADPPHFATGTIGKDNAIARHGIH-GLYRLYSIDVPSVLLNRGRNTIYL 608
++P + T D +I R + G Y I +P+ L +G N I L
Sbjct: 500 TTPASSPQLAVKLNGQLLTTLKYDNDKSIYRGAMQSGRYHEAHIPLPAGALQQGGNRITL 559
Query: 609 TQSRSRSPFQGVLYDYIRLEGPPK 632
V+YD I L P+
Sbjct: 560 ELLGGM-----VMYDAITLTETPQ 578
>sp|Q5AZ85|RGLB_EMENI Rhamnogalacturonate lyase B OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglB
PE=2 SV=2
Length = 660
Score = 92.8 bits (229), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 146/672 (21%), Positives = 259/672 (38%), Gaps = 89/672 (13%)
Query: 10 TKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQG 69
T++ +V++N ++ T G +I + Y + + L Q+ G + + P G
Sbjct: 23 TENDTSIVLENDRLRATFDKGRGSIIDL-YLDGQDFLGPQSGSTGIGPYLDCYCTP--SG 79
Query: 70 SYDKLIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVD--KRYIMRRGVSGFYFYA 127
Y ++Q + + I L + P + + + +R G +GF+ ++
Sbjct: 80 FYTAGSTNPVTELVQGTDSTGTKYA---GIILNDTYTPTGQEFQQYWFLRDGETGFHMFS 136
Query: 128 -IMERKEGWPDV-DMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAV 185
+ E P + ++ ++RT+F+ + + + S+D Q P+P D A + + +A
Sbjct: 137 RLAYYNETTPFLRNLQELRTLFRPNTDLWTHLT-SSDLQ-TAPLPSDEAIAEQIVVQDAT 194
Query: 186 LLTDPINPDLR----GEVDDKYQYSSEDKDIRVHGW-----ISSDPPVGFWMITPSDEFR 236
+ D E KY +S+ +D VHG S G W++ + +
Sbjct: 195 WRLNNTPDDAYYQQFSEYFTKYTFSNHWRDNDVHGLYADGSTSDGTTYGAWLVMNTKDTY 254
Query: 237 SGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEK 296
GGP DLT V ++ + S H+ E NG + + FGP N S
Sbjct: 255 YGGPLHSDLT--VDGIIYNYIVSNHHG--EGTPNITNG--FDRTFGPQFYLFNGGGSSS- 307
Query: 297 PLNLWEDAKRQMMVEVRKWPYNFPESV-----DFPKRNQRGGVFGQLRVHDRYISN-RLM 350
L D R + W +F +S+ + +QRG V G +++ S ++
Sbjct: 308 -LEELRDEARSLASP--SWNADFYDSIAKHVIGYVPSSQRGSVKGTIKLPKNAKSPIAVL 364
Query: 351 WADSAYV--GLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVG 408
D Y A P +Q+W +K G FSI V G Y L + GI G
Sbjct: 365 TVDGHYFQDNSAVP----------SSHQYWADIDKNGRFSIDRVVAGKYRLTVYADGIFG 414
Query: 409 DYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYT 468
D+ I V+A + ++ ++P G +W +G PD+S+ EF + + +
Sbjct: 415 DFTRDG-IVVKARKSTSIKE-TWKPESAGTEIWRLGTPDKSSGEF----RHGAARDPTHP 468
Query: 469 NHPEKFRQY-GLWERYVDLYRNDDLEYTVGDSYHAKDW------FFAHVTRDVGNRTYKP 521
HP ++ Y G ++ D ++Y +G+S A D+ F + +
Sbjct: 469 RHPPEYLIYWGAYDWQSDF--PGGIDYMIGESDPATDFNTVHWAVFGPTPDNPVAESNTT 526
Query: 522 TTWRIIFELK----HLNNNGHYTLQLALASATDSDLHV-------------RFNNPNADP 564
WRI F+L H T+QLA A A + V + N +P
Sbjct: 527 HDWRIRFDLSAKQLHARKTATLTIQLAGAKAASGNTDVYNASEPYANLPLRSYINEQEEP 586
Query: 565 PHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQSRSRSPFQG----- 619
G + I R + + P+ L G N + L+ + + ++
Sbjct: 587 LTMVIGYDQSSSCIVRSAVSCYQVREKWEFPASWLKEGSNLLRLSLPTNGTNYESAVLPT 646
Query: 620 ---VLYDYIRLE 628
V YD +RLE
Sbjct: 647 SVYVQYDALRLE 658
>sp|Q4WR79|RGLB_ASPFU Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=rglB PE=3 SV=1
Length = 658
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 136/575 (23%), Positives = 227/575 (39%), Gaps = 102/575 (17%)
Query: 114 YIMRRGVSGFYFYA-IMERKEGWPDV-DMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPE 171
+ +R G +G + ++ + E P + ++ + RT+F+ N + +++ + P+P
Sbjct: 124 WFLRDGETGLHMFSRLAYYNETTPFLRNLQEFRTLFR--PNTQLWTHLTSSELQTAPLPS 181
Query: 172 DRATGQPLAYPEAVLLTDPINPDLR----GEVDDKYQYSSEDKDIRVHGWI-----SSDP 222
A + + +A + D E KY +S++ +D VHG S+
Sbjct: 182 KNAVSKQVVVQDATWRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGTNSNGS 241
Query: 223 PVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFG 282
G W++ + GP DLT V +V + S H+ E NG + + FG
Sbjct: 242 TYGAWLV-----MNTKGPLHSDLT--VDGIVYNYIVSNHHG--EGTPNITNG--FDRTFG 290
Query: 283 PALVYLNSVSSEEKPL-NLWEDAKRQMMVEVRKWPYNFPES-----VDFPKRNQRGGVFG 336
P N L +L +A + + W F +S V + ++RG V G
Sbjct: 291 PQFYLFNGGKGSTSSLQDLRSEAAK---LADPSWNAEFYDSIAKHVVGYVPSSKRGSVDG 347
Query: 337 QLRVHDRYISNRLMWADSAYVGLAAPGGV----GSWERDSK----GYQFWTKANKRGYFS 388
++++ G + P + G + +D+ YQ+WT + G F
Sbjct: 348 RIKLPK---------------GASNPIAILTVDGQYFQDNSVVPSSYQYWTDIDTSGRFR 392
Query: 389 IKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDR 448
I V +G Y L + GI GD+ +TVRAG + ++ G +W +G PD+
Sbjct: 393 IDRVVEGKYRLTVYADGIFGDFVRDG-VTVRAGKTTTVKE-KWDAESAGKEIWRLGTPDK 450
Query: 449 SAAEF---FVPDPYPTLANQLYTNHPEKFRQY-GLWERYVDLYRNDDLEYTVGDSYHAKD 504
S+ EF DP L HP ++ Y G ++ D + ++YT+G S A D
Sbjct: 451 SSGEFRHGVARDPTHPL-------HPPEYLIYWGAYDWQSDFPKG--IDYTIGSSDPATD 501
Query: 505 WFFAH-----VTRDVGNRTYKPT-TWRIIFEL--KHLNNNGHYTLQLALASATDSD---- 552
+ H T D N Y T W+I F L K L N+ TL + LA A +
Sbjct: 502 FNTVHWSVFGPTPDNPNVEYNTTHDWKINFSLTKKQLRNSKKATLTIQLAGAKTASGNTD 561
Query: 553 -----------LHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNR 601
+H + N +P F G + I R + ++ P+ L
Sbjct: 562 EYKASEPYINLIHESYINDQKEPLSFVIGFNQSSSCIVRSAVSCYQVRSRMEFPADWLKV 621
Query: 602 GRNTIYL--------TQSRSRSPFQGVLYDYIRLE 628
G NT+ L T++ V YD +RLE
Sbjct: 622 GENTLTLHLPYNATDTETAILPATVYVQYDALRLE 656
>sp|B0XPA2|RGLB_ASPFC Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata
(strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglB PE=3
SV=1
Length = 658
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 136/575 (23%), Positives = 227/575 (39%), Gaps = 102/575 (17%)
Query: 114 YIMRRGVSGFYFYA-IMERKEGWPDV-DMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPE 171
+ +R G +G + ++ + E P + ++ + RT+F+ N + +++ + P+P
Sbjct: 124 WFLRDGETGLHMFSRLAYYNETTPFLRNLQEFRTLFR--PNTQLWTHLTSSELQTAPLPS 181
Query: 172 DRATGQPLAYPEAVLLTDPINPDLR----GEVDDKYQYSSEDKDIRVHGWI-----SSDP 222
A + + +A + D E KY +S++ +D VHG S+
Sbjct: 182 KNAVSKQVVVQDATWRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGTNSNGS 241
Query: 223 PVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFG 282
G W++ + GP DLT V +V + S H+ E NG + + FG
Sbjct: 242 TYGAWLV-----MNTKGPLHSDLT--VDGIVYNYIVSNHHG--EGTPNITNG--FDRTFG 290
Query: 283 PALVYLNSVSSEEKPL-NLWEDAKRQMMVEVRKWPYNFPES-----VDFPKRNQRGGVFG 336
P N L +L +A + + W F +S V + ++RG V G
Sbjct: 291 PQFYLFNGGKGSTSSLQDLRSEAAK---LADPSWNAEFYDSIAKHVVGYVPSSKRGSVDG 347
Query: 337 QLRVHDRYISNRLMWADSAYVGLAAPGGV----GSWERDSK----GYQFWTKANKRGYFS 388
++++ G + P + G + +D+ YQ+WT + G F
Sbjct: 348 RIKLPK---------------GASNPIAILTVDGQYFQDNSVVPSSYQYWTDIDTSGRFR 392
Query: 389 IKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDR 448
I V +G Y L + GI GD+ +TVRAG + ++ G +W +G PD+
Sbjct: 393 IDRVVEGKYRLTVYADGIFGDFVRDG-VTVRAGKTTTVKE-KWDAESAGKEIWRLGTPDK 450
Query: 449 SAAEF---FVPDPYPTLANQLYTNHPEKFRQY-GLWERYVDLYRNDDLEYTVGDSYHAKD 504
S+ EF DP L HP ++ Y G ++ D + ++YT+G S A D
Sbjct: 451 SSGEFRHGVARDPTHPL-------HPPEYLIYWGAYDWQSDFPKG--IDYTIGSSDPATD 501
Query: 505 WFFAH-----VTRDVGNRTYKPT-TWRIIFEL--KHLNNNGHYTLQLALASATDSD---- 552
+ H T D N Y T W+I F L K L N+ TL + LA A +
Sbjct: 502 FNTVHWSVFGPTPDNPNVEYNTTHDWKINFSLTKKQLRNSKKATLTIQLAGAKTASGNTD 561
Query: 553 -----------LHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNR 601
+H + N +P F G + I R + ++ P+ L
Sbjct: 562 EYKASEPYINLIHESYINDQKEPLSFVIGFNQSSSCIVRSAVSCYQVRSRMEFPADWLKV 621
Query: 602 GRNTIYL--------TQSRSRSPFQGVLYDYIRLE 628
G NT+ L T++ V YD +RLE
Sbjct: 622 GENTLTLHLPYNATDTETAILPATVYVQYDALRLE 656
>sp|Q0C7K7|RGLB_ASPTN Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain
NIH 2624 / FGSC A1156) GN=rglB PE=3 SV=1
Length = 660
Score = 89.7 bits (221), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 135/570 (23%), Positives = 227/570 (39%), Gaps = 89/570 (15%)
Query: 114 YIMRRGVSGFYFYA-IMERKEGWPDV-DMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPE 171
+ +R G +G + ++ + E P + ++ + RT+F+ N + +++ + P+P
Sbjct: 123 WFLRDGETGLHMFSRLAYYNETTPFLRNLQEFRTLFR--PNTDLWTHLTSSELQTAPLPS 180
Query: 172 DRATGQPLAYPEAVLLTDPINPDLR----GEVDDKYQYSSEDKDIRVHGW-----ISSDP 222
D A G+ + +A + D E KY +S+ +D VHG S+
Sbjct: 181 DEAVGKQVVVQDATWRFNNTPNDAYYTQFSEYFTKYTFSNAWRDNNVHGLYADGSTSNGT 240
Query: 223 PVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFG 282
G W++ + + GGP DLT V +V + S H+ E NG + + FG
Sbjct: 241 TFGAWLVMNTKDTYYGGPLHSDLT--VDGIVYNYIVSNHHG--EGTPNITNG--FDRTFG 294
Query: 283 PALVYLNSVSSEEKPLNLWEDAKRQMMVEVRKWPYNFPES-----VDFPKRNQRGGVFGQ 337
P N S +L E + W F +S V + ++RG V GQ
Sbjct: 295 PQFYLFNGGGSS----SLNELRSEAESLADPSWNVEFYDSIAKHVVGYVPSSKRGSVQGQ 350
Query: 338 LRV---HDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQ 394
+++ R I+ ++ D Y + D + YQ+W + + G F + +V +
Sbjct: 351 IKLPRGATRPIA--ILTVDGQYFQDNS--------VDPRSYQYWVEMDANGKFQLDHVVE 400
Query: 395 GDYNLYAWIPGIVGDY-KYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEF 453
G Y L + GI GDY + + R + IN ++P G +W +G PD+S+ EF
Sbjct: 401 GKYRLTVYADGIFGDYVRDGVQVRGRKTTRINDS---WQPESAGVEVWRLGTPDKSSGEF 457
Query: 454 F---VPDPYPTLANQLYTNHPEKFRQY-GLWERYVDLYRNDDLEYTVGDSYHAKDWFFAH 509
DP L HP ++ Y G ++ D + + YT+G S A D+ H
Sbjct: 458 LHGVARDPTHPL-------HPPEYLIYWGAYDWQQDF--PNGVNYTIGSSDPATDFNTVH 508
Query: 510 -----VTRDVGNRTYKPT-TWRIIFEL--KHLNNNGHYTLQLALASAT----DSDLHV-- 555
T D + Y T W I F L K L TL + LA A ++D++
Sbjct: 509 WSVFGPTPDNPDVEYDTTHDWAINFSLTKKQLQKRKTATLTIQLAGAKTASGNTDVYKPD 568
Query: 556 ---------RFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTI 606
+ N +P G + I R + + P+ L G NT+
Sbjct: 569 EPYTNLALESYINQQEEPLTMLIGFNQSSSCIVRSAVSCYQVRSRMTFPADWLQVGSNTL 628
Query: 607 YLTQSRSRSPFQGVL--------YDYIRLE 628
L R+ + + + YD +RLE
Sbjct: 629 TLHLPRNATDVEDAILPGTVYVQYDALRLE 658
>sp|B8N5T6|RGLB_ASPFN Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=rglB PE=3 SV=1
Length = 663
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 130/575 (22%), Positives = 230/575 (40%), Gaps = 97/575 (16%)
Query: 114 YIMRRGVSGFY-FYAIMERKEGWPDV-DMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPE 171
+ +R G +G + F + E P + ++ + RT+F+ N + +++ + P+P
Sbjct: 124 WFLRDGETGLHTFSRLAYYNETTPFLRNLQEFRTLFR--PNTELWTHLTSSEAQTAPLPS 181
Query: 172 DRATGQPLAYPEAVLLTDPINPDLR----GEVDDKYQYSSEDKDIRVHGWI-----SSDP 222
A + +A + D E KY +S+ +D VHG S+
Sbjct: 182 KEAIANEVVVQDATWRFNNTPNDAYYTQFSEYFTKYTFSNLWRDNSVHGLYADGTNSNGT 241
Query: 223 PVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFG 282
G W++ + + GGP DLT V +V + S H+ E NG + + FG
Sbjct: 242 TYGAWLVMNTKDTYYGGPLHSDLT--VDGIVYNYLVSNHHG--EGTPNITNG--FDRTFG 295
Query: 283 PALVYLNSVSSEEKPLNLWEDAKRQM-MVEVRKWPYNFPESV-----DFPKRNQRGGVFG 336
P N + L ED + + + W +F +S+ + ++RG V G
Sbjct: 296 PQYYLFNGGKGSKSSL---EDLRSEAETLADPGWNADFYDSIAKHVIGYAPSSKRGSVQG 352
Query: 337 QLRV---HDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVR 393
Q+++ R I+ ++ D Y + ++ +Q+W + + G F + +V+
Sbjct: 353 QVKLPKGSTRPIA--ILTVDGQYFQDNS--------VEASSHQYWAEMGQDGTFQLDHVK 402
Query: 394 QGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEF 453
+G Y L + GI GD+ + + V+AG + +E G +W +G PD+S+ EF
Sbjct: 403 EGKYRLTVFADGIFGDFVHDG-VEVQAGKVTKVQE-TWEQESAGVEVWRLGTPDKSSGEF 460
Query: 454 F---VPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEYTVGDSYHAKDWFFAHV 510
PDP L + P+ F +G ++ D + + YT+G S A D+ H
Sbjct: 461 LHGDAPDPTHPL------HPPQHFIYWGAYDWQQDF--PNGVNYTIGSSDPAVDFNTVHW 512
Query: 511 TRDVGNRTYKPT------------TWRIIFEL--KHLNNNGHYTLQLALA----SATDSD 552
+ Y PT W I F L K L TL + LA +A ++D
Sbjct: 513 S------VYGPTPANPDVEYDTTHDWTINFSLDKKQLQQRKTATLTIQLAGAKTAAGNTD 566
Query: 553 LH-----------VRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNR 601
++ + N +P G + I R + ++ P+ LN
Sbjct: 567 VYNATEPYANLALESYINEQKEPLTLLVGFNQSSSCIVRSAVSCYQVRSRMEFPADWLNV 626
Query: 602 GRNTIYLTQSRSRSPFQG--------VLYDYIRLE 628
G N + L R+ + ++ V YD +RLE
Sbjct: 627 GNNVLTLHLPRNATDYETAVLPGTVYVQYDALRLE 661
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1
Length = 706
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 126/543 (23%), Positives = 213/543 (39%), Gaps = 81/543 (14%)
Query: 114 YIMRRGVSGFY-FYAIMERKEGWPDV-DMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPE 171
+ +R G +G + F + E P + ++ + RT+F+ N + +S+ + P+P
Sbjct: 124 WFLRDGETGLHTFSRLAYYNETTPYLRNLQEFRTLFR--PNTELWTHLSSSEVQTAPLPS 181
Query: 172 DRATGQPLAYPEAVLLTDPINPD----LRGEVDDKYQYSSEDKDIRVHGW-----ISSDP 222
+A + + +A + D + KY +S+ +D VHG S+
Sbjct: 182 KKAVEEEVVVQDATWTFNNTPTDEYYVQFADYFTKYTFSNAWRDNSVHGMYADGSTSNGS 241
Query: 223 PVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFG 282
G W++ + + GGP DLT V +V + S H+ N + + + FG
Sbjct: 242 TFGAWLVMNTKDTYYGGPLHSDLT--VDGIVYNYLVSNHHGEGTPNITYG----FDRTFG 295
Query: 283 PALVYLNSVSSEEKPLN-LWEDAKRQMMVEVRKWPYNFPES-----VDFPKRNQRGGVFG 336
P + N L L DA+ + W +F +S V + +QRG V G
Sbjct: 296 PQYYHFNGGKGSTASLQELKSDAE---TLADPSWNVDFYDSIAKHVVGYTPSSQRGSVQG 352
Query: 337 QLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERD----SKGYQFWTKANKRGYFSIKNV 392
++++ A +A G + +D S YQ+W + + G+FS+ +V
Sbjct: 353 KIKL-----------PKGATRPIAVLTVDGQYFQDNSVNSSSYQYWAEIDDSGHFSVDHV 401
Query: 393 RQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAE 452
++G Y L + GI GD+ + V+AG + +E G +W +G PD+S+ E
Sbjct: 402 KEGPYRLTVYADGIFGDFVRDG-VQVKAGKKTTIQE-TWEAESAGTEIWRLGTPDKSSGE 459
Query: 453 F---FVPDPYPTLANQLYTNHPEKFRQY-GLWERYVDLYRNDDLEYTVGDSYHAKD---- 504
F DP L HP ++ Y G ++ D D + YT+G S A D
Sbjct: 460 FRHGVARDPTHPL-------HPPEYLIYWGAYDWQSDF--PDGINYTIGTSDPATDLNTV 510
Query: 505 -WFFAHVTRDVGNRTYKPT-TWRIIFELKHLN----NNGHYTLQLALASATDSDLHV--- 555
W T + Y T W I F L + + T+QLA A A + V
Sbjct: 511 HWSVFGPTPNDPRVEYDTTHDWTINFPLSEDDLAERSKATLTIQLAGAKAASGNTDVYNA 570
Query: 556 ----------RFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNT 605
+ N A+P G + I R + ++ P+ L G N
Sbjct: 571 SEPYTNLALESYINDQAEPLTLLIGFNQSSSCIVRSAVSCYQVRSRMEFPADWLKVGNNV 630
Query: 606 IYL 608
+ L
Sbjct: 631 LTL 633
>sp|A1D144|RGLB_NEOFI Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=rglB PE=3 SV=1
Length = 658
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 135/571 (23%), Positives = 228/571 (39%), Gaps = 94/571 (16%)
Query: 114 YIMRRGVSGFYFYA-IMERKEGWPDV-DMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPE 171
+ +R G +G + ++ + E P + ++ + RT+F+ N + +++ + P+P
Sbjct: 124 WFLRDGETGLHMFSRLAYYNETTPFLRNLQEFRTLFR--PNTQLWTHLTSSELQTAPLPS 181
Query: 172 DRATGQPLAYPEAVLLTDPINPDLR----GEVDDKYQYSSEDKDIRVHGWI-----SSDP 222
A + + +A + D E KY +S++ +D VHG S+
Sbjct: 182 KNAVSKQVVVQDATWRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGTNSNGS 241
Query: 223 PVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFG 282
G W++ + GP DLT V +V + S H+ E NG + + FG
Sbjct: 242 TYGAWLV-----MNTKGPLHSDLT--VDGIVYNYIVSNHHG--EGTPNITNG--FDRTFG 290
Query: 283 PALVYLNSVSSEEKPL-NLWEDAKRQMMVEVRKWPYNFPES-----VDFPKRNQRGGVFG 336
P N L +L +A + + W F +S V + ++RG V G
Sbjct: 291 PQFYLFNGGKGSTSSLQDLRSEAAK---LADPSWNAEFYDSIAKHVVGYVPSSKRGSVDG 347
Query: 337 QLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSK----GYQFWTKANKRGYFSIKNV 392
++++ A +A G + +D+ YQ+WT + G F I V
Sbjct: 348 RVKL-----------PKGATNPIAILTVDGQYFQDNSVVPSSYQYWTDIDTSGKFRIDRV 396
Query: 393 RQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAE 452
+G Y L + GI GD+ +TV+AG + ++ G +W +G PD+S+ E
Sbjct: 397 VEGKYRLTVYADGIFGDFVRDG-VTVKAGKTTTVKE-KWDAESAGKEVWRLGTPDKSSGE 454
Query: 453 F---FVPDPYPTLANQLYTNHPEKFRQY-GLWERYVDLYRNDDLEYTVGDSYHAKDWFFA 508
F DP L HP ++ Y G ++ DL + ++Y +G S A D+
Sbjct: 455 FRHGVARDPTHPL-------HPPEYLIYWGAYDWQSDLPKG--IDYRIGSSDPATDFNTV 505
Query: 509 H-----VTRDVGNRTYKPT-TWRIIFEL--KHLNNNGHYTLQLALASAT----DSDL--- 553
H T D + Y T W+I F L K L N+ TL + LA A ++D+
Sbjct: 506 HWSVFGPTPDNPDVEYNTTHDWKINFSLTKKQLRNSKKATLTIQLAGAKTASGNTDVYNA 565
Query: 554 --------HVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNT 605
H + N +P F G + I R + ++ P+ L G NT
Sbjct: 566 SEPYINLSHESYINDQKEPLSFVIGFNQSSSCIVRSAVSCYQVRSRMEFPADWLKVGENT 625
Query: 606 IYL--------TQSRSRSPFQGVLYDYIRLE 628
+ L T++ V YD +RLE
Sbjct: 626 LTLHLPYNATDTETAILPATVYVQYDALRLE 656
>sp|Q5B5P1|RGLC_EMENI Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rglC PE=3 SV=1
Length = 1041
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 176/447 (39%), Gaps = 60/447 (13%)
Query: 140 MDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAVLLTDPINPDLRGEV 199
+ ++RT+F+ N + + S MP+ +T + L D + +
Sbjct: 151 LGELRTLFRPNTNLWTHFSGSEGNYGPMPL---SSTEKITVQDATTYLGDTTDDPYVSQY 207
Query: 200 DD---KYQYSSEDKDIRVHGWISSDPP------VGFWMITPSDEFRSGGPNKQDLTSHVG 250
D KY + +D VHG S+ G W++ + E GGP DL V
Sbjct: 208 SDYFTKYTLTESWRDHDVHGHFSNGSTSGDGNTYGAWLVHNTRETYYGGPLHADLV--VD 265
Query: 251 PVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMV 310
+V + S HY N +G + + FGP + NS L DA +
Sbjct: 266 GIVYNYIVSGHYGAP--NPNLTHG--FDRTFGPQYYHFNSGGPGTTLEELRADAAQYASP 321
Query: 311 EVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGG---VGS 367
E W F +S+ ++ V R R N A + L+ +
Sbjct: 322 E---WNAEFYDSI---AKHIPNYVPSTGRTTFRGKVNLPKGAKKPIIVLSENEQDFQLNV 375
Query: 368 WERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLG 427
+++DS Q+W + + G F+I V +G Y + + I G + N+ V GSN +
Sbjct: 376 FKKDS--LQYWAEIDGSGAFTIPRVVKGTYRVTIYADEIFG-WFIKDNVKV-IGSNAH-- 429
Query: 428 VLVYEPPRKGPTLWEIGIPDRSAAEF---FVPDPYPTLANQLYTNHPEKFRQYGLWERYV 484
++ G +W IG+PD+S+ EF + PD L PE++R Y W +Y
Sbjct: 430 TFTWKEETAGKEIWRIGVPDKSSGEFLHGYAPDTSKPL-------QPEQYRIY--WGKYD 480
Query: 485 DLYRND---DLEYTVGDSYHAKD-----W-FFAHVTRDVGNRTY--KPTTWRIIFEL--K 531
Y +D + Y VG S AKD W FF + N Y W I F+L
Sbjct: 481 --YPSDFPEGVNYHVGKSDPAKDLNYIHWSFFPSQGNHLRNEPYYQNVNNWTITFDLTAS 538
Query: 532 HLNNNGHYTLQLALASATDSDLHVRFN 558
L N T + LA +++ + ++N
Sbjct: 539 QLRNTKTATFTVQLAGTRNANGNSKWN 565
>sp|Q2U5P7|RGLC_ASPOR Probable rhamnogalacturonate lyase C OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=rglC PE=3 SV=1
Length = 695
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 135/352 (38%), Gaps = 54/352 (15%)
Query: 225 GFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPA 284
G W++ + E GGP DL V +V + S H+ N + + +GP
Sbjct: 244 GAWLVHNTVETYYGGPLHSDLV--VDGIVYNYLVSGHHGAPTPNLT----HGFDRTWGPQ 297
Query: 285 LVYLNSVSSEEKPLNLWEDAKRQMMVEVRKWPYNFPESV-----DFPKRNQRGGVFGQLR 339
Y N SE +L DA + E W F +S+ +F R G++
Sbjct: 298 FYYFNRGDSETTLADLRADAAKYADPE---WNAEFYDSIADHIPNFTPSTGRTTFKGKVS 354
Query: 340 VHDRYISNRLMWADSAYVGLAAPGGVGSWER-DSKGYQFWTKANKRGYFSIKNVRQGDYN 398
+ A + L+ G +++ Q+W + +K G FSI V +G Y
Sbjct: 355 LPKG--------AKRPIIVLSEDGQDFQLNVFNTESLQYWAEIDKSGSFSIPRVVEGTYR 406
Query: 399 LYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEF---FV 455
+ + I G + +++ S ++ G +W IGIPD+S+ E+ +
Sbjct: 407 ITIYADEIFGWFIQDHVKVLKSQSKDY--SFTWKEESAGKEIWRIGIPDKSSGEYLHGYA 464
Query: 456 PDPYPTLANQLYTNHPEKFRQYGLWERY---VDLYRNDDLEYTVGDSYHAKD-----W-F 506
PD L PE+ R Y W +Y D + + + VG S ++D W F
Sbjct: 465 PDTSKPL-------QPEQHRIY--WGKYDYPADF--PEGINFHVGKSDPSQDLNYIHWAF 513
Query: 507 FAHVTRDVGNRTY--KPTTWRIIFELK----HLNNNGHYTLQLALASATDSD 552
F + Y W + F+L H N +T+Q+A A + +
Sbjct: 514 FPSQGNHLRTEPYYDNVNNWTVTFDLTADQLHNTNTATFTVQIAGAKTANGN 565
>sp|Q00019|RGLA_ASPAC Rhamnogalacturonate lyase A OS=Aspergillus aculeatus GN=rglA PE=1
SV=1
Length = 527
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 91/243 (37%), Gaps = 38/243 (15%)
Query: 368 WERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKY-SANITVRAGSNINL 426
W D+ Q+WT + G F+ ++ G Y + + G+Y ++++TV AGS
Sbjct: 296 WYNDAA--QYWTYTSSSGSFTSPAMKPGTYTMVYY----QGEYAVATSSVTVSAGSTTTK 349
Query: 427 GVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDL 486
+ + G T+++IG D P + ANQL HP R W
Sbjct: 350 NI--SGSVKTGTTIFKIGEWDGQ------PTGFRNAANQLRM-HPSDSRMSS-W------ 393
Query: 487 YRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALA 546
L YTVG S A F V + V N P T + G TL++
Sbjct: 394 ---GPLTYTVGSS--ALTDFPMAVFKSVNN----PVTIKFTATSAQ---TGAATLRIGTT 441
Query: 547 -SATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNT 605
S N+ P A T + R GL +Y + +PS + G NT
Sbjct: 442 LSFAGGRPQATINSYTGSAP--AAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNT 499
Query: 606 IYL 608
I +
Sbjct: 500 ITI 502
>sp|Q5LLL2|METK_RUEPO S-adenosylmethionine synthase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=metK PE=3 SV=1
Length = 393
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 176 GQPLAYPEAVLLTDPINPDLRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEF 235
G P+ VL T ++PDL D + +++ GW+S+D W + P+ +F
Sbjct: 183 GMPVGVSSLVLSTQHLDPDLT-SADIRAIVEPYIREVLPEGWLSADT---VWHVNPTGKF 238
Query: 236 RSGGPN 241
GGP+
Sbjct: 239 VIGGPD 244
>sp|B8NCU7|RGLA_ASPFN Probable rhamnogalacturonate lyase A OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=rglA PE=3 SV=1
Length = 528
Score = 32.7 bits (73), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 89/236 (37%), Gaps = 36/236 (15%)
Query: 376 QFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYS-ANITVRAGSNINLGVLVYEPP 434
Q+WT + G F+ ++ GDY + + G+YK + +++V AGS+ + + +
Sbjct: 303 QYWTYTSSDGSFTSPAMKPGDYTMVYY----QGEYKVAETSVSVTAGSSTSKDISGF--V 356
Query: 435 RKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEY 494
G T+++IG D + P + NQL HP R W L Y
Sbjct: 357 ETGDTIFKIGDWDGT------PTGFRNAENQLRM-HPSDSRMSS-W---------GPLTY 399
Query: 495 TVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALA-SATDSDL 553
TVG S D+ A P T + G TL++ S
Sbjct: 400 TVGSS-ELTDFPMAAF-----KGVNDPVTIKFTATSAQ---TGAATLRIGTTLSFAGGRP 450
Query: 554 HVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLT 609
N+ P T + R GL +Y +++PS + G NTI ++
Sbjct: 451 QATINDYEGSAPSAPTNL--NSRGVTRGAYRGLGEVYDVNIPSGTIVEGENTITIS 504
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,195,477
Number of Sequences: 539616
Number of extensions: 12334727
Number of successful extensions: 23910
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 23882
Number of HSP's gapped (non-prelim): 24
length of query: 633
length of database: 191,569,459
effective HSP length: 124
effective length of query: 509
effective length of database: 124,657,075
effective search space: 63450451175
effective search space used: 63450451175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)