Query 006741
Match_columns 633
No_of_seqs 198 out of 291
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 13:49:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06045 Rhamnogal_lyase: Rham 100.0 8.6E-60 1.9E-64 462.0 21.1 198 1-199 4-203 (203)
2 PF09284 RhgB_N: Rhamnogalactu 100.0 3.2E-50 6.9E-55 400.0 22.7 235 7-304 2-244 (249)
3 PF14683 CBM-like: Polysacchar 100.0 2.5E-46 5.5E-51 361.5 9.9 165 438-627 1-167 (167)
4 PF14686 fn3_3: Polysaccharide 99.9 3.8E-22 8.2E-27 176.3 8.5 93 330-429 1-95 (95)
5 PF13620 CarboxypepD_reg: Carb 98.7 6.6E-08 1.4E-12 81.8 8.8 81 333-432 1-82 (82)
6 PF13715 DUF4480: Domain of un 98.4 2.9E-06 6.4E-11 72.9 10.7 88 333-445 1-88 (88)
7 cd03863 M14_CPD_II The second 97.8 6.7E-05 1.4E-09 82.0 9.5 100 295-432 275-374 (375)
8 cd03865 M14_CPE_H Peptidase M1 97.8 3.7E-05 8.1E-10 84.5 7.5 98 295-431 304-401 (402)
9 cd03864 M14_CPN Peptidase M14 97.8 7.1E-05 1.5E-09 82.2 9.0 96 295-431 294-391 (392)
10 cd06245 M14_CPD_III The third 97.6 0.00027 5.9E-09 77.0 9.6 76 332-432 287-362 (363)
11 cd03868 M14_CPD_I The first ca 97.4 0.00038 8.3E-09 76.0 8.2 74 331-426 295-368 (372)
12 cd03858 M14_CP_N-E_like Carbox 97.4 0.00062 1.3E-08 74.3 9.3 114 275-426 251-370 (374)
13 cd03867 M14_CPZ Peptidase M14- 97.0 0.002 4.3E-08 71.1 8.8 71 333-426 319-391 (395)
14 cd03866 M14_CPM Peptidase M14 96.2 0.016 3.4E-07 63.7 8.5 70 331-421 294-363 (376)
15 PF08400 phage_tail_N: Prophag 95.2 0.11 2.4E-06 49.2 8.8 78 333-422 4-81 (134)
16 PF08308 PEGA: PEGA domain; I 94.2 0.26 5.6E-06 40.7 7.9 45 385-433 25-69 (71)
17 PF03422 CBM_6: Carbohydrate b 94.0 0.32 7E-06 44.1 8.8 80 536-628 44-124 (125)
18 PRK15036 hydroxyisourate hydro 93.5 0.18 4E-06 47.9 6.3 64 329-403 24-91 (137)
19 PF09430 DUF2012: Protein of u 92.8 0.49 1.1E-05 43.9 8.0 40 377-419 22-61 (123)
20 cd00421 intradiol_dioxygenase 92.2 0.35 7.5E-06 46.2 6.3 64 330-399 10-80 (146)
21 cd03869 M14_CPX_like Peptidase 91.6 0.39 8.6E-06 53.3 6.8 89 295-421 307-395 (405)
22 KOG1948 Metalloproteinase-rela 90.7 0.64 1.4E-05 55.2 7.5 53 332-403 316-369 (1165)
23 COG3485 PcaH Protocatechuate 3 90.6 0.71 1.5E-05 47.5 7.0 64 330-399 71-143 (226)
24 PF05738 Cna_B: Cna protein B- 90.2 1.2 2.6E-05 36.3 6.9 44 379-423 21-66 (70)
25 PF07210 DUF1416: Protein of u 89.4 2.1 4.5E-05 37.5 7.7 62 330-408 6-67 (85)
26 cd03463 3,4-PCD_alpha Protocat 88.7 0.93 2E-05 45.3 6.0 63 330-398 35-106 (185)
27 cd03459 3,4-PCD Protocatechuat 88.2 1.1 2.3E-05 43.7 5.9 64 330-399 14-87 (158)
28 PF07495 Y_Y_Y: Y_Y_Y domain; 87.9 0.6 1.3E-05 37.6 3.5 28 377-404 20-48 (66)
29 PF03170 BcsB: Bacterial cellu 86.2 1.6 3.6E-05 50.7 7.1 77 523-613 30-111 (605)
30 TIGR02465 chlorocat_1_2 chloro 86.0 1.6 3.5E-05 45.4 6.2 64 330-399 97-165 (246)
31 PF00775 Dioxygenase_C: Dioxyg 84.9 2.1 4.7E-05 42.6 6.2 64 330-399 28-98 (183)
32 TIGR02423 protocat_alph protoc 84.8 1.9 4.2E-05 43.3 5.9 65 329-399 37-111 (193)
33 TIGR02422 protocat_beta protoc 84.1 3.8 8.3E-05 42.0 7.8 67 327-399 56-132 (220)
34 cd03462 1,2-CCD chlorocatechol 83.5 1.9 4.1E-05 45.0 5.3 65 329-399 97-166 (247)
35 cd03464 3,4-PCD_beta Protocate 82.6 3.1 6.7E-05 42.7 6.4 65 329-399 63-137 (220)
36 TIGR02438 catachol_actin catec 80.0 3 6.5E-05 44.3 5.4 65 329-399 130-199 (281)
37 PF10670 DUF4198: Domain of un 79.7 5 0.00011 39.6 6.7 62 331-403 150-211 (215)
38 KOG1948 Metalloproteinase-rela 79.4 4.9 0.00011 48.2 7.2 56 333-404 120-175 (1165)
39 cd03460 1,2-CTD Catechol 1,2 d 78.8 3.9 8.5E-05 43.5 5.8 65 329-399 122-191 (282)
40 cd03458 Catechol_intradiol_dio 78.4 13 0.00028 39.1 9.5 65 329-399 102-171 (256)
41 smart00606 CBD_IV Cellulose Bi 78.4 20 0.00044 32.6 9.9 86 526-627 42-129 (129)
42 TIGR02439 catechol_proteo cate 77.4 4.8 0.0001 42.9 6.0 65 329-399 126-195 (285)
43 TIGR02962 hdxy_isourate hydrox 77.2 3.7 8E-05 37.8 4.5 53 350-412 14-71 (112)
44 PRK10340 ebgA cryptic beta-D-g 77.2 87 0.0019 39.3 17.6 42 4-46 715-756 (1021)
45 PRK11114 cellulose synthase re 76.0 3.8 8.3E-05 49.2 5.4 75 525-612 84-163 (756)
46 PF02837 Glyco_hydro_2_N: Glyc 75.5 6.3 0.00014 37.5 5.8 68 524-613 72-140 (167)
47 cd03461 1,2-HQD Hydroxyquinol 75.1 6.1 0.00013 41.9 6.0 65 329-399 118-187 (277)
48 PF14315 DUF4380: Domain of un 74.5 58 0.0013 34.2 13.2 113 16-136 7-139 (274)
49 PF13364 BetaGal_dom4_5: Beta- 72.5 12 0.00026 34.1 6.6 53 539-609 50-104 (111)
50 PF02929 Bgal_small_N: Beta ga 71.0 1E+02 0.0023 32.4 14.1 28 18-46 2-29 (276)
51 cd05469 Transthyretin_like Tra 70.6 6.5 0.00014 36.3 4.4 54 350-412 14-71 (113)
52 PF00576 Transthyretin: HIUase 69.1 3.5 7.6E-05 38.0 2.3 48 350-402 14-66 (112)
53 KOG2649 Zinc carboxypeptidase 67.8 18 0.0004 41.0 7.9 78 332-433 378-455 (500)
54 PRK09525 lacZ beta-D-galactosi 67.4 1.4E+02 0.0031 37.4 16.3 42 5-47 741-782 (1027)
55 PF01060 DUF290: Transthyretin 66.6 12 0.00027 31.9 5.0 56 335-402 1-56 (80)
56 PF14900 DUF4493: Domain of un 65.1 1E+02 0.0022 31.4 12.4 40 391-432 61-107 (235)
57 cd05821 TLP_Transthyretin Tran 63.6 11 0.00024 35.3 4.4 68 331-412 6-77 (121)
58 cd05822 TLP_HIUase HIUase (5-h 63.5 12 0.00025 34.6 4.5 53 350-412 14-71 (112)
59 PF14849 YidC_periplas: YidC p 61.7 1.2E+02 0.0026 31.1 12.3 94 16-120 2-112 (270)
60 PF03170 BcsB: Bacterial cellu 59.9 15 0.00032 42.9 5.7 78 522-612 324-409 (605)
61 KOG4342 Alpha-mannosidase [Car 59.1 17 0.00036 42.6 5.7 49 5-56 706-756 (1078)
62 PF02369 Big_1: Bacterial Ig-l 58.6 57 0.0012 29.0 8.0 65 332-406 25-91 (100)
63 PLN03059 beta-galactosidase; P 56.5 11 0.00023 45.7 3.9 86 521-613 620-715 (840)
64 PF07748 Glyco_hydro_38C: Glyc 51.3 1.7E+02 0.0037 32.2 12.1 126 16-151 89-226 (457)
65 smart00095 TR_THY Transthyreti 50.3 14 0.0003 34.6 2.8 55 349-412 16-74 (121)
66 PF08531 Bac_rhamnosid_N: Alph 48.1 9.4 0.0002 37.3 1.4 60 538-613 5-66 (172)
67 PRK10340 ebgA cryptic beta-D-g 47.9 22 0.00048 44.3 4.8 68 523-612 112-179 (1021)
68 cd03457 intradiol_dioxygenase_ 47.6 47 0.001 33.3 6.2 62 332-398 27-100 (188)
69 COG2351 Transthyretin-like pro 46.5 70 0.0015 30.0 6.6 67 332-413 9-80 (124)
70 PF13754 Big_3_4: Bacterial Ig 43.0 49 0.0011 26.2 4.5 28 376-403 3-32 (54)
71 PF11008 DUF2846: Protein of u 42.7 29 0.00063 31.6 3.6 44 383-426 56-99 (117)
72 PF01263 Aldose_epim: Aldose 1 40.8 1.8E+02 0.004 30.0 9.8 32 16-47 3-37 (300)
73 PF01690 PLRV_ORF5: Potato lea 38.9 1.4E+02 0.003 34.1 8.8 68 371-448 74-145 (465)
74 PF03944 Endotoxin_C: delta en 34.7 87 0.0019 29.6 5.6 95 525-628 41-140 (143)
75 PF11797 DUF3324: Protein of u 33.7 47 0.001 31.5 3.6 30 391-420 102-131 (140)
76 PF07550 DUF1533: Protein of u 31.9 35 0.00076 28.1 2.1 19 592-610 36-55 (65)
77 PRK09525 lacZ beta-D-galactosi 30.2 62 0.0014 40.5 4.8 67 523-612 123-191 (1027)
78 PRK10150 beta-D-glucuronidase; 27.7 1E+02 0.0022 36.0 5.8 66 524-611 69-135 (604)
79 KOG0496 Beta-galactosidase [Ca 26.6 1.3E+02 0.0029 35.6 6.3 71 520-613 556-626 (649)
80 PF14200 RicinB_lectin_2: Rici 25.2 1E+02 0.0022 26.9 4.1 37 351-395 35-72 (105)
81 PF12866 DUF3823: Protein of u 24.0 2.7E+02 0.0059 28.7 7.4 63 331-402 21-84 (222)
82 smart00634 BID_1 Bacterial Ig- 22.7 4E+02 0.0086 23.0 7.2 66 331-407 19-86 (92)
83 PF01190 Pollen_Ole_e_I: Polle 20.6 1.1E+02 0.0025 26.7 3.4 36 350-390 19-54 (97)
No 1
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=100.00 E-value=8.6e-60 Score=461.99 Aligned_cols=198 Identities=64% Similarity=1.112 Sum_probs=193.8
Q ss_pred CCCCCeEEEEcCCEEEEEECCeEEEEEeCCceeEEEEEECCeeccccccCCCCcceeEEEEecCCCCCCcccccccceEE
Q 006741 1 MTSLGVQLNTKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFK 80 (633)
Q Consensus 1 ~~~~~v~l~~~g~~~~vidNg~l~~tv~k~~G~itsi~y~G~~nll~~~~~~~~~GY~d~~w~~~g~~~~~~~~~gt~~~ 80 (633)
++..+|+|++++++ |+||||+|+|||+||+|+||+|+|+|++|||+..+++.++||||++|+.+|..++|+++.||+|+
T Consensus 4 ~~~~~V~L~~~~~~-VvldNGiVqVtls~p~G~VtgIkYnGi~NLle~~n~e~nrGYwD~~W~~~G~~~~~~~~~gt~f~ 82 (203)
T PF06045_consen 4 SSSSGVTLTVQGRQ-VVLDNGIVQVTLSKPGGIVTGIKYNGIDNLLEVANKENNRGYWDLVWNEPGSKGKFDRIKGTEFS 82 (203)
T ss_pred ccCCCeEEEEcCCE-EEEECCEEEEEEcCCCceEEEEEECCEehhhcccCcccCCceEEEecccCCccccccccCCcEEE
Confidence 36789999999999 99999999999999999999999999999999999999999999999999998999999999999
Q ss_pred EEeecCCEEEEEEEEeeccccCCCccccceeEEEEEEcCcceeEEEEEeeccCCCCCCCCcceEEEEEeCCCCcceeeee
Q 006741 81 VIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAIS 160 (633)
Q Consensus 81 vi~~~~~~i~vs~~~~~~~s~~g~~~~~~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~~ 160 (633)
||++++++|||||+++|+||++++.+||+||+||||++|+||||+|+|++|+++||+++|+|+|+||||++++|++|+++
T Consensus 83 Vi~~te~qVevSF~r~w~~s~~~~~~plnIDkryVm~rG~SGfY~YAI~e~~~~~Pa~~l~q~R~vfKl~~d~F~ymai~ 162 (203)
T PF06045_consen 83 VIEQTEEQVEVSFSRTWDPSLDGKSVPLNIDKRYVMLRGSSGFYSYAIFEHPAGWPAFDLGQTRIVFKLNKDKFHYMAIS 162 (203)
T ss_pred EEEcCCCeEEEEEEcccCcCCCCCcceeEeeEEEEEecCCceEEEEEEEecCCCCCCcccceeEEEEECCccccceEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccc--CCCccccccceEEecCCCCCCCCcee
Q 006741 161 NDRQRIMPMPEDR--ATGQPLAYPEAVLLTDPINPDLRGEV 199 (633)
Q Consensus 161 d~r~~~mP~~~d~--~~g~~l~~~e~v~l~~~~~~~~~G~~ 199 (633)
|+|||.||+|+|+ .+|++|+|+|||+|++|++|+|+|||
T Consensus 163 d~rqr~mP~~~D~~~~~~~~l~y~eav~l~~p~~~~~~gev 203 (203)
T PF06045_consen 163 DDRQRIMPSPDDRDPARGQPLAYPEAVLLVNPINPQFRGEV 203 (203)
T ss_pred ccccccCCChHHccccCCCcccCchhhhcCCCCCccccccC
Confidence 9999999999999 58899999999999999999999986
No 2
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding []. ; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=100.00 E-value=3.2e-50 Score=400.05 Aligned_cols=235 Identities=20% Similarity=0.328 Sum_probs=159.7
Q ss_pred EEEEcCCEEEEEECCe-EEEEEeCCceeEEEEEECCeeccccccCCCCcceeEEEEecCCCCCCcccccccceEEEEeec
Q 006741 7 QLNTKHRRLVVMDNGL-VQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFKVIMQD 85 (633)
Q Consensus 7 ~l~~~g~~~~vidNg~-l~~tv~k~~G~itsi~y~G~~nll~~~~~~~~~GY~d~~w~~~g~~~~~~~~~gt~~~vi~~~ 85 (633)
-++++|++ +|||.|. |+|+|+|++|||+||+|+|+|.+.+.++++.++| +|++...+++.
T Consensus 2 G~t~sg~~-~viDtga~Lvf~V~~s~gDitSi~y~g~ElQ~~~k~ShI~SG------------------LGsatVs~~~~ 62 (249)
T PF09284_consen 2 GYTDSGSN-YVIDTGAGLVFKVSKSNGDITSIKYNGTELQYSSKNSHINSG------------------LGSATVSITTS 62 (249)
T ss_dssp EEEE-SSE-EEEE---TEEEEEETTT--EEEEEETTEE-B-SSS-BEETT--------------------SS-EEEEEEE
T ss_pred ceEecCCc-EEEECCCCEEEEEecCCCCeEEEEECCEeeecCCccceeccC------------------CCccEEEEEee
Confidence 36899999 9999764 9999999999999999999986655555556666 56677777777
Q ss_pred CCEEEEEEEEeeccccCCCccccceeEEEEEEcCcceeEEEEEeeccCCCCCCCCcceEEEEEeCCCCcceee-eecccc
Q 006741 86 ENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMA-ISNDRQ 164 (633)
Q Consensus 86 ~~~i~vs~~~~~~~s~~g~~~~~~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~-~~d~r~ 164 (633)
.++|.|+|... +|+||||+|+|++.|||++ + .+ .+++|+|||+|+||++++||+.. .++
T Consensus 63 ~~~IkVt~~~~------------tLthyyv~r~g~~~IYmaT-~--~~--~e~~igelRfIaRL~~~~lpn~~~~~~--- 122 (249)
T PF09284_consen 63 GDYIKVTCKTG------------TLTHYYVARPGENNIYMAT-Y--IT--AEPSIGELRFIARLNRSILPNEYPYGD--- 122 (249)
T ss_dssp TTEEEEEEE-S------------SEEEEEEEETT--EEEEEE-E--ES--S--TTS-EEEEEEE-TTTS-EEETTGG---
T ss_pred CCEEEEEEEcC------------CeEEEEEEecCCceEEEEe-c--cC--CCCCccceEEEEEcccccCCCCCCccc---
Confidence 78999999974 7999999999999999999 4 24 68899999999999999999933 111
Q ss_pred ccCCCCcccCCCccccccceEEecCCCCCCCCceeeceeeecccccccceEEEEcCCCCeEEEEEcCCCCcccCCCceec
Q 006741 165 RIMPMPEDRATGQPLAYPEAVLLTDPINPDLRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPNKQD 244 (633)
Q Consensus 165 ~~mP~~~d~~~g~~l~~~e~v~l~~~~~~~~~G~~~sKY~~s~~~~d~~vhG~~~~g~~vG~W~I~ps~E~~sGGP~kqd 244 (633)
.++ ..|.+++|.+||+++. +|+++||||++.+++|+++|||++ +++|+|||++++|.+|||||+||
T Consensus 123 -----~~~-~~g~taIEgsDVf~~~------~G~TrSKfYSs~r~IDd~~hgv~g--~~vgv~mi~~~~E~SSGGPFfRD 188 (249)
T PF09284_consen 123 -----VST-TDGGTAIEGSDVFLVS------DGQTRSKFYSSQRFIDDDVHGVSG--SAVGVYMIMSNYEKSSGGPFFRD 188 (249)
T ss_dssp -----GG---TT-EEEETTTEEEE-------TTEEEEGGGG--BGGG-SEEEEE---SS-EEEEE----TT-SS-TT-B-
T ss_pred -----ccc-cCCceEEeeccEEEec------CceEeeeeccccceeccceEEEec--CCeEEEEEeCCccccCCCCchhh
Confidence 122 4688889999999986 899999999999999999999985 88999999999999999999999
Q ss_pred ccccCCcc---eEEEEeeeeccCCcccccccCCcCcc-eeeceEEEEEcCCCCC--CCccccHHHH
Q 006741 245 LTSHVGPV---VLSMFTSTHYAGKEINTEFRNGEPWK-KVFGPALVYLNSVSSE--EKPLNLWEDA 304 (633)
Q Consensus 245 L~~h~g~~---~l~~~~s~H~~g~~~~~~~~~ge~w~-kv~GP~~~y~N~g~~~--~~~~~l~~Da 304 (633)
|++|.++. +++||+|+|.+ +|+|| +|||||+|+|++|.++ .++|..|+|.
T Consensus 189 I~~~~~~~~~~Ly~ymnSgH~q----------TE~~R~GLhGPYaL~FT~g~~Ps~~~~D~sff~~ 244 (249)
T PF09284_consen 189 INTNNGGDGNELYNYMNSGHTQ----------TEPYRMGLHGPYALAFTDGGAPSASDLDTSFFDD 244 (249)
T ss_dssp --EEE-SS-EEEEEEEE-STT------------S----EEEEEEEEEEESS----S-----GGGGG
T ss_pred hhhccCCccceeeeeEecCccc----------CchhccccCCceEEEEcCCCCCCCccccccchhh
Confidence 99998765 89999999987 89999 9999999999998654 3588899886
No 3
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=100.00 E-value=2.5e-46 Score=361.47 Aligned_cols=165 Identities=50% Similarity=0.860 Sum_probs=115.8
Q ss_pred CceeEEeccCCCcceeecCCCCCccccccccCCChhhhcchhhhhhccccCCCCeeEEeeccCCCCCceeEEEEeeCCCC
Q 006741 438 PTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEYTVGDSYHAKDWFFAHVTRDVGNR 517 (633)
Q Consensus 438 ~~LweIGi~Drta~eF~~~d~~~~~~n~~~~~~~d~~r~yglW~r~~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~~ 517 (633)
++|||||+|||+|.||+++| +++||||+ |+||+++||++|++|+||+| +++||||||+++.
T Consensus 1 ~~iW~IG~~Drta~eF~~~~-------------~~~~r~~~-~~d~~~~~p~~~~~ytVG~S-~~~Dw~y~~~~~~---- 61 (167)
T PF14683_consen 1 PTIWQIGTPDRTAAEFRNGD-------------PDKYRQYG-WSDYSRDFPWEDLTYTVGSS-PAKDWPYAQWGRV---- 61 (167)
T ss_dssp SEEEEEE-SSSS-TTSBTHH--------------HHTTS---TT--TTS----S-EEETTTS--GGGSBSEEETTT----
T ss_pred CcceEeCCCCCCchhhccCC-------------hhhhhhcC-cccchhhCCCCCCEEEEccC-cccCCcEEEEecc----
Confidence 58999999999999999974 27899999 99999999998999999999 8889999999642
Q ss_pred CCCCeeEEEEEEecCCCCCccEEEEEEeccc-CCCceEEEEcCCCCCCCCCccccccCCCeeeeeEEE-eeeEEEEEEee
Q 006741 518 TYKPTTWRIIFELKHLNNNGHYTLQLALASA-TDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIH-GLYRLYSIDVP 595 (633)
Q Consensus 518 ~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~-G~~~~~~~~ip 595 (633)
.++|+|+|+|++++..+.+||||+||+| ++++++|+|||+....| ...+++|++++|+|+| |+|++++|+||
T Consensus 62 ---~~~w~I~F~l~~~~~~~~~tL~i~la~a~~~~~~~V~vNg~~~~~~---~~~~~~d~~~~r~g~~~G~~~~~~~~ip 135 (167)
T PF14683_consen 62 ---NGTWTIKFDLDAVQLAGTYTLRIALAGASAGGRLQVSVNGWSGPFP---SAPFGNDNAIYRSGIHRGNYRLYEFDIP 135 (167)
T ss_dssp ---S--EEEEEEE-GGG-S--EEEEEEEEEEETT-EEEEEETTEE--------------S--GGGT---S---EEEEEE-
T ss_pred ---CCCEEEEEECCCCccCCcEEEEEEeccccCCCCEEEEEcCccCCcc---ccccCCCCceeeCceecccEEEEEEEEc
Confidence 2789999999999976799999999999 99999999999766533 2347899999999998 99999999999
Q ss_pred CCceeeeecEEEEEEeeCCCCCceEEEEEEEE
Q 006741 596 SVLLNRGRNTIYLTQSRSRSPFQGVLYDYIRL 627 (633)
Q Consensus 596 a~~L~~G~NtI~lt~~~g~s~~~~vmyD~IrL 627 (633)
+++|++|+|+|+|++++|++.++|||||||||
T Consensus 136 a~~L~~G~Nti~lt~~~gs~~~~gvmyD~I~L 167 (167)
T PF14683_consen 136 ASLLKAGENTITLTVPSGSGLSPGVMYDYIRL 167 (167)
T ss_dssp TTSS-SEEEEEEEEEE-S-GGSSEEEEEEEEE
T ss_pred HHHEEeccEEEEEEEccCCCccCeEEEEEEEC
Confidence 99999999999999999988889999999998
No 4
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=99.86 E-value=3.8e-22 Score=176.29 Aligned_cols=93 Identities=49% Similarity=0.827 Sum_probs=54.3
Q ss_pred CceEEEEEEEEcccccccccccc-CccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEEECceee
Q 006741 330 QRGGVFGQLRVHDRYISNRLMWA-DSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVG 408 (633)
Q Consensus 330 qRGtVsG~l~~sd~~~~~~~~pa-~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G 408 (633)
+||+|+|+|+++|++. ..++ ..++|+|+.+++.+ |+++||||+++|++|+|+|+|||||+|+|++|.+|+.|
T Consensus 1 ~RG~VsG~l~l~dg~~---~~~~~~~~~Vgl~~~~d~~----q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g~~g 73 (95)
T PF14686_consen 1 QRGSVSGRLTLSDGVT---NPPAGANAVVGLAPPGDFQ----QNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADGIFG 73 (95)
T ss_dssp G-BEEEEEEE---SS-----TT--S-EEEEEE------------SS-EEEEE--TTSEEE---B-SEEEEEEEEE----T
T ss_pred CCCEEEEEEEEccCcc---cCccceeEEEEeeeccccc----cCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEecccC
Confidence 5999999999999853 1333 67899999998653 49999999999999999999999999999999999999
Q ss_pred eeee-eeeEEEecCceeeecce
Q 006741 409 DYKY-SANITVRAGSNINLGVL 429 (633)
Q Consensus 409 ~~~~-~~~VtV~aG~t~~l~~l 429 (633)
||.. +.+|+|++|++++|++|
T Consensus 74 ~~~~~~~~ItV~~g~~~~lg~~ 95 (95)
T PF14686_consen 74 DYKVASDSITVSGGTTTDLGDL 95 (95)
T ss_dssp TEEEEEEEEEE-T-EEE-----
T ss_pred ceEEecceEEEcCCcEeccccC
Confidence 9995 88899999999988754
No 5
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.71 E-value=6.6e-08 Score=81.75 Aligned_cols=81 Identities=25% Similarity=0.337 Sum_probs=58.7
Q ss_pred EEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEEECceeeeeee
Q 006741 333 GVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKY 412 (633)
Q Consensus 333 tVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~ 412 (633)
+|+|+|...++ .|..+|.|.|.... .+..+-+.||++|+|.|.+++||+|+|.+..+|+. ..
T Consensus 1 tI~G~V~d~~g------~pv~~a~V~l~~~~---------~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~---~~ 62 (82)
T PF13620_consen 1 TISGTVTDATG------QPVPGATVTLTDQD---------GGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQ---PQ 62 (82)
T ss_dssp -EEEEEEETTS------CBHTT-EEEET--T---------TTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE----E
T ss_pred CEEEEEEcCCC------CCcCCEEEEEEEee---------CCCEEEEEECCCceEEEEccCCEeEEEEEEECCcc---eE
Confidence 68999987776 89999999996432 33468899999999999999999999999987766 33
Q ss_pred e-eeEEEecCceeeecceEec
Q 006741 413 S-ANITVRAGSNINLGVLVYE 432 (633)
Q Consensus 413 ~-~~VtV~aG~t~~l~~l~~~ 432 (633)
. ..|+|.+|++..+ ++.++
T Consensus 63 ~~~~v~v~~~~~~~~-~i~L~ 82 (82)
T PF13620_consen 63 TQENVTVTAGQTTTV-DITLE 82 (82)
T ss_dssp EEEEEEESSSSEEE---EEEE
T ss_pred EEEEEEEeCCCEEEE-EEEEC
Confidence 3 3599999998877 46653
No 6
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.39 E-value=2.9e-06 Score=72.92 Aligned_cols=88 Identities=30% Similarity=0.294 Sum_probs=67.2
Q ss_pred EEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEEECceeeeeee
Q 006741 333 GVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKY 412 (633)
Q Consensus 333 tVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~ 412 (633)
+|+|+|+-++ .+.|..+|.|.+.... ..+.||++|.|+|+ +++|+|+|.+...|+. ..
T Consensus 1 ti~G~V~d~~-----t~~pl~~a~V~~~~~~-------------~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~---~~ 58 (88)
T PF13715_consen 1 TISGKVVDSD-----TGEPLPGATVYLKNTK-------------KGTVTDENGRFSIK-LPEGDYTLKISYIGYE---TK 58 (88)
T ss_pred CEEEEEEECC-----CCCCccCeEEEEeCCc-------------ceEEECCCeEEEEE-EcCCCeEEEEEEeCEE---EE
Confidence 5899997665 2389999999984332 66889999999999 9999999999986655 56
Q ss_pred eeeEEEecCceeeecceEecCCCCCCceeEEec
Q 006741 413 SANITVRAGSNINLGVLVYEPPRKGPTLWEIGI 445 (633)
Q Consensus 413 ~~~VtV~aG~t~~l~~l~~~~p~~g~~LweIGi 445 (633)
...|.+..++...+ .+.+.+ ...+|-||.+
T Consensus 59 ~~~i~~~~~~~~~~-~i~L~~--~~~~L~eVvV 88 (88)
T PF13715_consen 59 TITISVNSNKNTNL-NIYLEP--KSNQLDEVVV 88 (88)
T ss_pred EEEEEecCCCEEEE-EEEEee--CcccCCeEEC
Confidence 65677776665556 577774 5667877753
No 7
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=97.82 E-value=6.7e-05 Score=82.03 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=72.7
Q ss_pred CCccccHHHHHHHHHHHhccCCCCCCCCCCCCCCCCceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCcc
Q 006741 295 EKPLNLWEDAKRQMMVEVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKG 374 (633)
Q Consensus 295 ~~~~~l~~Da~~~~~~E~~~WPy~f~~~~~y~~~~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~ 374 (633)
+.+...|.+-|.-+.+ |.. +-...|+|+|+-.. .+.|..+|.|.+...
T Consensus 275 ~~l~~~w~~n~~all~--------------~~~-~~~~gI~G~V~D~~-----~g~pl~~AtV~V~g~------------ 322 (375)
T cd03863 275 EELPKYWEQNRRSLLQ--------------FMK-QVHRGVRGFVLDAT-----DGRGILNATISVADI------------ 322 (375)
T ss_pred HHHHHHHHHHHHHHHH--------------HHH-HhcCeEEEEEEeCC-----CCCCCCCeEEEEecC------------
Confidence 4566778887654431 111 12479999996531 127888999998533
Q ss_pred ceeEEEeCCccceEeCcccCCceEEEEEECceeeeeeeeeeEEEecCceeeecceEec
Q 006741 375 YQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYE 432 (633)
Q Consensus 375 yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~~ 432 (633)
...+.||.+|.|.+ .|+||+|+|+|++.|+. ..+.+|+|.+|+++.+ ++.++
T Consensus 323 -~~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~---~~~~~v~V~~~~~~~~-~~~L~ 374 (375)
T cd03863 323 -NHPVTTYKDGDYWR-LLVPGTYKVTASARGYD---PVTKTVEVDSKGAVQV-NFTLS 374 (375)
T ss_pred -cCceEECCCccEEE-ccCCeeEEEEEEEcCcc---cEEEEEEEcCCCcEEE-EEEec
Confidence 35678999999999 69999999999997766 5555799999999887 46664
No 8
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.82 E-value=3.7e-05 Score=84.51 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=73.1
Q ss_pred CCccccHHHHHHHHHHHhccCCCCCCCCCCCCCCCCceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCcc
Q 006741 295 EKPLNLWEDAKRQMMVEVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKG 374 (633)
Q Consensus 295 ~~~~~l~~Da~~~~~~E~~~WPy~f~~~~~y~~~~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~ 374 (633)
+.+...|.+-|.-+. .|.....|| |+|+|+-..+ .|..+|.|.+...
T Consensus 304 ~~L~~~W~~n~~all--------------~~~~q~~~g-I~G~V~D~~g------~pI~~AtV~V~g~------------ 350 (402)
T cd03865 304 ETLKQYWEDNKNSLV--------------NYIEQVHRG-VKGFVKDLQG------NPIANATISVEGI------------ 350 (402)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHhccc-eEEEEECCCC------CcCCCeEEEEEcC------------
Confidence 467788999876543 222223467 9999965434 7888999998533
Q ss_pred ceeEEEeCCccceEeCcccCCceEEEEEECceeeeeeeeeeEEEecCceeeecceEe
Q 006741 375 YQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVY 431 (633)
Q Consensus 375 yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~ 431 (633)
...+.||.+|.|.+ .++||+|+|+|.+.|+. .....|+|.+++++.++ +++
T Consensus 351 -~~~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~---~~~~~V~V~~~~~~~vd-f~L 401 (402)
T cd03865 351 -DHDITSAKDGDYWR-LLAPGNYKLTASAPGYL---AVVKKVAVPYSPAVRVD-FEL 401 (402)
T ss_pred -ccccEECCCeeEEE-CCCCEEEEEEEEecCcc---cEEEEEEEcCCCcEEEe-EEe
Confidence 24467999999998 89999999999998877 45567999999887773 655
No 9
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.79 E-value=7.1e-05 Score=82.24 Aligned_cols=96 Identities=15% Similarity=0.215 Sum_probs=72.5
Q ss_pred CCccccHHHHHHHHHH--HhccCCCCCCCCCCCCCCCCceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccC
Q 006741 295 EKPLNLWEDAKRQMMV--EVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDS 372 (633)
Q Consensus 295 ~~~~~l~~Da~~~~~~--E~~~WPy~f~~~~~y~~~~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~ 372 (633)
+.+...|.+-|.-+.+ |+. -..|+|+|+..++ .|..+|.|.|...
T Consensus 294 ~~l~~~w~~n~~all~~~~~~-----------------~~gI~G~V~D~~g------~pi~~A~V~v~g~---------- 340 (392)
T cd03864 294 EELEREWLGNREALISYIEQV-----------------HQGIKGMVTDENN------NGIANAVISVSGI---------- 340 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----------------cCeEEEEEECCCC------CccCCeEEEEECC----------
Confidence 4667788887665432 222 2489999976655 7999999998433
Q ss_pred ccceeEEEeCCccceEeCcccCCceEEEEEECceeeeeeeeeeEEEecCceeeecceEe
Q 006741 373 KGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVY 431 (633)
Q Consensus 373 k~yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~ 431 (633)
..-+.||++|.| +.+++||+|+|++++.|+. ..+.+|+|.+++++.+ ++++
T Consensus 341 ---~~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~---~~t~~v~V~~~~~~~~-df~L 391 (392)
T cd03864 341 ---SHDVTSGTLGDY-FRLLLPGTYTVTASAPGYQ---PSTVTVTVGPAEATLV-NFQL 391 (392)
T ss_pred ---ccceEECCCCcE-EecCCCeeEEEEEEEcCce---eEEEEEEEcCCCcEEE-eeEe
Confidence 356789999999 9999999999999997776 6666799999887666 3554
No 10
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.57 E-value=0.00027 Score=76.98 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=60.9
Q ss_pred eEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEEECceeeeee
Q 006741 332 GGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYK 411 (633)
Q Consensus 332 GtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~ 411 (633)
-+|+|+|+..++ .|..+|.|.+.. .. .+.||.+|.|.+. ++||+|+|++...|+. .
T Consensus 287 ~gI~G~V~d~~g------~pi~~A~V~v~g-------------~~-~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~---~ 342 (363)
T cd06245 287 KGVHGVVTDKAG------KPISGATIVLNG-------------GH-RVYTKEGGYFHVL-LAPGQHNINVIAEGYQ---Q 342 (363)
T ss_pred cEEEEEEEcCCC------CCccceEEEEeC-------------CC-ceEeCCCcEEEEe-cCCceEEEEEEEeCce---e
Confidence 579999976555 889999999842 12 5679999999997 9999999999997766 5
Q ss_pred eeeeEEEecCceeeecceEec
Q 006741 412 YSANITVRAGSNINLGVLVYE 432 (633)
Q Consensus 412 ~~~~VtV~aG~t~~l~~l~~~ 432 (633)
.+.+|+|.+++++.+ ++++.
T Consensus 343 ~~~~V~v~~~~~~~~-~f~L~ 362 (363)
T cd06245 343 EHLPVVVSHDEASSV-KIVLD 362 (363)
T ss_pred EEEEEEEcCCCeEEE-EEEec
Confidence 666799999888777 46654
No 11
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=97.41 E-value=0.00038 Score=76.01 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=58.0
Q ss_pred ceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEEECceeeee
Q 006741 331 RGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDY 410 (633)
Q Consensus 331 RGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~ 410 (633)
.+.|+|+|+.+.+ .|..+|.|.|.... ..+.||++|.|.+ +++||+|+|++.+.|+.-
T Consensus 295 ~~~i~G~V~d~~g------~pv~~A~V~v~~~~-------------~~~~td~~G~y~~-~l~~G~Y~l~vs~~Gf~~-- 352 (372)
T cd03868 295 HIGVKGFVRDASG------NPIEDATIMVAGID-------------HNVTTAKFGDYWR-LLLPGTYTITAVAPGYEP-- 352 (372)
T ss_pred CCceEEEEEcCCC------CcCCCcEEEEEecc-------------cceEeCCCceEEe-cCCCEEEEEEEEecCCCc--
Confidence 4789999976655 78899999985332 5678999999985 799999999999988762
Q ss_pred eeeeeEEEecCceeee
Q 006741 411 KYSANITVRAGSNINL 426 (633)
Q Consensus 411 ~~~~~VtV~aG~t~~l 426 (633)
.....|+|.+|+++.+
T Consensus 353 ~~~~~v~v~~g~~~~~ 368 (372)
T cd03868 353 STVTDVVVKEGEATSV 368 (372)
T ss_pred eEEeeEEEcCCCeEEE
Confidence 1333477889988776
No 12
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=97.38 E-value=0.00062 Score=74.34 Aligned_cols=114 Identities=16% Similarity=0.234 Sum_probs=76.4
Q ss_pred cCcc-eeeceEEEEEcCCCC----CCCccccHHHHHHHHHHHhccCCCCCCCCCCCCCCCCceEEEEEEEEccccccccc
Q 006741 275 EPWK-KVFGPALVYLNSVSS----EEKPLNLWEDAKRQMMVEVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRL 349 (633)
Q Consensus 275 e~w~-kv~GP~~~y~N~g~~----~~~~~~l~~Da~~~~~~E~~~WPy~f~~~~~y~~~~qRGtVsG~l~~sd~~~~~~~ 349 (633)
+.|- ...+|+.+-|=-+.. .+.+..+|.+...-+..= . .+...+|+|+|+..++
T Consensus 251 ~Dw~y~~~~~~~~t~El~~~~~p~~~~i~~i~~en~~all~l--------------~-~~a~~~i~G~V~d~~g------ 309 (374)
T cd03858 251 QDWNYLHTNCFEITLELSCCKFPPASELPKYWEENREALLAY--------------I-EQVHRGIKGFVRDANG------ 309 (374)
T ss_pred hhhhhhccCceEEEEeccCCCCCChhHhHHHHHHHHHHHHHH--------------H-hhcCCceEEEEECCCC------
Confidence 4566 666776665543321 234455666554332210 0 1123489999966544
Q ss_pred cccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEEECceeeeeeeeeeEEEec-Cceeee
Q 006741 350 MWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRA-GSNINL 426 (633)
Q Consensus 350 ~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~a-G~t~~l 426 (633)
.|..+|.|.|. +....+.||.+|.|.+. ++||+|+|.+...|+. .++.+|+|.. |+++.+
T Consensus 310 ~pl~~A~V~i~-------------~~~~~~~Td~~G~f~~~-l~~G~y~l~vs~~Gy~---~~~~~v~v~~~g~~~~~ 370 (374)
T cd03858 310 NPIANATISVE-------------GINHDVTTAEDGDYWRL-LLPGTYNVTASAPGYE---PQTKSVVVPNDNSAVVV 370 (374)
T ss_pred CccCCeEEEEe-------------cceeeeEECCCceEEEe-cCCEeEEEEEEEcCcc---eEEEEEEEecCCceEEE
Confidence 78889999983 34478899999999986 7999999999997765 5555677877 887766
No 13
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=97.04 E-value=0.002 Score=71.08 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=55.2
Q ss_pred EEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEEECceeeeeee
Q 006741 333 GVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKY 412 (633)
Q Consensus 333 tVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~ 412 (633)
+|+|+|+..++ .|..+|.|.|. +....+.||++|.|. .+++||+|+|.+.+.|+. ..
T Consensus 319 ~i~G~V~D~~g------~pi~~A~V~v~-------------g~~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~---~~ 375 (395)
T cd03867 319 GIKGFVKDKDG------NPIKGARISVR-------------GIRHDITTAEDGDYW-RLLPPGIHIVSAQAPGYT---KV 375 (395)
T ss_pred eeEEEEEcCCC------CccCCeEEEEe-------------ccccceEECCCceEE-EecCCCcEEEEEEecCee---eE
Confidence 69999976655 88899999984 334678899999997 589999999999997776 55
Q ss_pred eeeEEEec--Cceeee
Q 006741 413 SANITVRA--GSNINL 426 (633)
Q Consensus 413 ~~~VtV~a--G~t~~l 426 (633)
..+|+|.. ++...+
T Consensus 376 ~~~v~v~~~~~~~~~~ 391 (395)
T cd03867 376 MKRVTLPARMKRAGRV 391 (395)
T ss_pred EEEEEeCCcCCCceEe
Confidence 56688865 444444
No 14
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=96.19 E-value=0.016 Score=63.74 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=52.2
Q ss_pred ceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEEECceeeee
Q 006741 331 RGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDY 410 (633)
Q Consensus 331 RGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~ 410 (633)
.+.|+|+|+-..+ .|..+|.|.|...+ ...-+.||++|.|.+. ++||+|+|.+.++|+.
T Consensus 294 ~~gI~G~V~D~~g------~pi~~A~V~v~g~~-----------~~~~~~T~~~G~y~~~-l~pG~Y~v~vsa~Gy~--- 352 (376)
T cd03866 294 HLGVKGQVFDSNG------NPIPNAIVEVKGRK-----------HICPYRTNVNGEYFLL-LLPGKYMINVTAPGFK--- 352 (376)
T ss_pred cCceEEEEECCCC------CccCCeEEEEEcCC-----------ceeEEEECCCceEEEe-cCCeeEEEEEEeCCcc---
Confidence 5679999965444 78889999985332 1123468999999775 9999999999998876
Q ss_pred eeeeeEEEecC
Q 006741 411 KYSANITVRAG 421 (633)
Q Consensus 411 ~~~~~VtV~aG 421 (633)
....+|.|.+.
T Consensus 353 ~~~~~v~v~~~ 363 (376)
T cd03866 353 TVITNVIIPYN 363 (376)
T ss_pred eEEEEEEeCCC
Confidence 45566777753
No 15
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=95.20 E-value=0.11 Score=49.18 Aligned_cols=78 Identities=21% Similarity=0.159 Sum_probs=54.1
Q ss_pred EEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEEECceeeeeee
Q 006741 333 GVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKY 412 (633)
Q Consensus 333 tVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~ 412 (633)
.|||.|+-..| +|..++.+.|+.-... .+-=.+.-=+..|++.|+|+|. +.||.|.++++..|.. ..+
T Consensus 4 ~ISGvL~dg~G------~pv~g~~I~L~A~~tS---~~Vv~~t~as~~t~~~G~Ys~~-~epG~Y~V~l~~~g~~--~~~ 71 (134)
T PF08400_consen 4 KISGVLKDGAG------KPVPGCTITLKARRTS---STVVVGTVASVVTGEAGEYSFD-VEPGVYRVTLKVEGRP--PVY 71 (134)
T ss_pred EEEEEEeCCCC------CcCCCCEEEEEEccCc---hheEEEEEEEEEcCCCceEEEE-ecCCeEEEEEEECCCC--cee
Confidence 58999855444 8999999999754321 0001244456788999999994 9999999999987754 223
Q ss_pred eeeEEEecCc
Q 006741 413 SANITVRAGS 422 (633)
Q Consensus 413 ~~~VtV~aG~ 422 (633)
-..|+|.+.+
T Consensus 72 vG~I~V~~dS 81 (134)
T PF08400_consen 72 VGDITVYEDS 81 (134)
T ss_pred EEEEEEecCC
Confidence 3457776443
No 16
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=94.25 E-value=0.26 Score=40.74 Aligned_cols=45 Identities=22% Similarity=0.476 Sum_probs=36.5
Q ss_pred cceEeCcccCCceEEEEEECceeeeeeeeeeEEEecCceeeecceEecC
Q 006741 385 GYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEP 433 (633)
Q Consensus 385 G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~~~ 433 (633)
...++..+++|.|+|.+..+|+. ..+..|.|.+|++..+. +.+++
T Consensus 25 tp~~~~~l~~G~~~v~v~~~Gy~---~~~~~v~v~~~~~~~v~-~~L~~ 69 (71)
T PF08308_consen 25 TPLTLKDLPPGEHTVTVEKPGYE---PYTKTVTVKPGETTTVN-VTLEP 69 (71)
T ss_pred CcceeeecCCccEEEEEEECCCe---eEEEEEEECCCCEEEEE-EEEEE
Confidence 34578789999999999987766 56677999999998884 77763
No 17
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=94.00 E-value=0.32 Score=44.12 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=48.9
Q ss_pred CccEEEEEEecccCC-CceEEEEcCCCCCCCCCccccccCCCeeeeeEEEeeeEEEEEEeeCCceeeeecEEEEEEeeCC
Q 006741 536 NGHYTLQLALASATD-SDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQSRSR 614 (633)
Q Consensus 536 ~~~~tLriala~a~~-~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~lt~~~g~ 614 (633)
.+.|+|++..|.... ++++|+||+.+.. ...+..++. .+---.|...+..| .|.+|.|+|+|....+.
T Consensus 44 ~g~y~~~~~~a~~~~~~~~~l~id~~~g~--~~~~~~~~~------tg~w~~~~~~~~~v---~l~~G~h~i~l~~~~~~ 112 (125)
T PF03422_consen 44 AGTYTLTIRYANGGGGGTIELRIDGPDGT--LIGTVSLPP------TGGWDTWQTVSVSV---KLPAGKHTIYLVFNGGD 112 (125)
T ss_dssp SEEEEEEEEEEESSSSEEEEEEETTTTSE--EEEEEEEE-------ESSTTEEEEEEEEE---EEESEEEEEEEEESSSS
T ss_pred CceEEEEEEEECCCCCcEEEEEECCCCCc--EEEEEEEcC------CCCccccEEEEEEE---eeCCCeeEEEEEEECCC
Confidence 478889888887644 7999999993322 111111211 11011233444444 45669999999987764
Q ss_pred CCCceEEEEEEEEe
Q 006741 615 SPFQGVLYDYIRLE 628 (633)
Q Consensus 615 s~~~~vmyD~IrLe 628 (633)
+ ..+-.|+|+|+
T Consensus 113 ~--~~~niD~~~f~ 124 (125)
T PF03422_consen 113 G--WAFNIDYFQFT 124 (125)
T ss_dssp S--B-EEEEEEEEE
T ss_pred C--ceEEeEEEEEE
Confidence 3 45889999986
No 18
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=93.50 E-value=0.18 Score=47.90 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=46.6
Q ss_pred CCceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEe---Cc-ccCCceEEEEEE
Q 006741 329 NQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSI---KN-VRQGDYNLYAWI 403 (633)
Q Consensus 329 ~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI---~n-VrpGtY~L~a~~ 403 (633)
++.+.|++.|+-.. ..+||.++.|-|....+ +.|. --.-+.||++|+|.. .+ +.||.|.|...+
T Consensus 24 a~~~~Is~HVLDt~-----~G~PA~gV~V~L~~~~~-~~w~-----~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t 91 (137)
T PRK15036 24 AQQNILSVHILNQQ-----TGKPAADVTVTLEKKAD-NGWL-----QLNTAKTDKDGRIKALWPEQTATTGDYRVVFKT 91 (137)
T ss_pred ccCCCeEEEEEeCC-----CCcCCCCCEEEEEEccC-CceE-----EEEEEEECCCCCCccccCcccCCCeeEEEEEEc
Confidence 34467999987542 34899999999965432 2444 125577999999986 34 889999999984
No 19
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=92.85 E-value=0.49 Score=43.89 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=30.8
Q ss_pred eEEEeCCccceEeCcccCCceEEEEEECceeeeeeeeeeEEEe
Q 006741 377 FWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVR 419 (633)
Q Consensus 377 ywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~ 419 (633)
+-+...++|+|.|.||++|+|.|.+-...+. |. .-.|.|.
T Consensus 22 ~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~--F~-~~RVdV~ 61 (123)
T PF09430_consen 22 ISAFVRSDGSFVFHNVPPGSYLLEVHSPDYV--FP-PYRVDVS 61 (123)
T ss_pred eEEEecCCCEEEeCCCCCceEEEEEECCCcc--cc-CEEEEEe
Confidence 3677899999999999999999999865433 22 2346666
No 20
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=92.18 E-value=0.35 Score=46.23 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=45.8
Q ss_pred CceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccC-------ccceeEEEeCCccceEeCcccCCceEE
Q 006741 330 QRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDS-------KGYQFWTKANKRGYFSIKNVRQGDYNL 399 (633)
Q Consensus 330 qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~-------k~yqywt~td~~G~FtI~nVrpGtY~L 399 (633)
+.=++.|+|+-.++ .|..+|.|-|......|....+. -..--...||++|.|.+.-|+||.|.+
T Consensus 10 ~~l~l~G~V~D~~g------~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~ 80 (146)
T cd00421 10 EPLTLTGTVLDGDG------CPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPI 80 (146)
T ss_pred CEEEEEEEEECCCC------CCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCC
Confidence 34589999987766 77888999986555444333211 122334778999999999999999994
No 21
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=91.64 E-value=0.39 Score=53.35 Aligned_cols=89 Identities=19% Similarity=0.288 Sum_probs=58.8
Q ss_pred CCccccHHHHHHHHHHHhccCCCCCCCCCCCCCCCCceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCcc
Q 006741 295 EKPLNLWEDAKRQMMVEVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKG 374 (633)
Q Consensus 295 ~~~~~l~~Da~~~~~~E~~~WPy~f~~~~~y~~~~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~ 374 (633)
+.+...|.+-|.-+.+ |.....|| |+|.|+-..+ .|-.+|.|.+..-
T Consensus 307 ~~L~~~W~~N~~all~--------------~~~~vh~G-ikG~V~d~~g------~~i~~a~i~v~g~------------ 353 (405)
T cd03869 307 SELPEEWENNKESLLV--------------FMEQVHRG-IKGVVRDKTG------KGIPNAIISVEGI------------ 353 (405)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHhcC-ceEEEECCCC------CcCCCcEEEEecC------------
Confidence 4566778777654321 11112354 8999865544 7888899887432
Q ss_pred ceeEEEeCCccceEeCcccCCceEEEEEECceeeeeeeeeeEEEecC
Q 006741 375 YQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAG 421 (633)
Q Consensus 375 yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG 421 (633)
.....|.++|.|-- =+.||+|+++|.++|+. ....+|+|..+
T Consensus 354 -~~~v~t~~~GdywR-ll~pG~y~v~~~a~gy~---~~~~~~~v~~~ 395 (405)
T cd03869 354 -NHDIRTASDGDYWR-LLNPGEYRVTAHAEGYT---SSTKNCEVGYE 395 (405)
T ss_pred -ccceeeCCCCceEE-ecCCceEEEEEEecCCC---cccEEEEEcCC
Confidence 24456778887654 38999999999998765 55566777744
No 22
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=0.64 Score=55.22 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=42.1
Q ss_pred eEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCc-ccCCceEEEEEE
Q 006741 332 GGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKN-VRQGDYNLYAWI 403 (633)
Q Consensus 332 GtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~n-VrpGtY~L~a~~ 403 (633)
-+|+|||++.- ...|.++|.|.+.. +--.+||++|+|++.| +..|+|++.|-.
T Consensus 316 fSvtGRVl~g~-----~g~~l~gvvvlvng--------------k~~~kTdaqGyykLen~~t~gtytI~a~k 369 (1165)
T KOG1948|consen 316 FSVTGRVLVGS-----KGLPLSGVVVLVNG--------------KSGGKTDAQGYYKLENLKTDGTYTITAKK 369 (1165)
T ss_pred EEeeeeEEeCC-----CCCCccceEEEEcC--------------cccceEcccceEEeeeeeccCcEEEEEec
Confidence 48999997762 23788888888732 2456899999999999 999999999963
No 23
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.64 E-value=0.71 Score=47.47 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=47.4
Q ss_pred CceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccce-------eE--EEeCCccceEeCcccCCceEE
Q 006741 330 QRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQ-------FW--TKANKRGYFSIKNVRQGDYNL 399 (633)
Q Consensus 330 qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yq-------yw--t~td~~G~FtI~nVrpGtY~L 399 (633)
+|=.|+|+|+-.++ +|..+|.|=+-+.+..|-.....+.+. =| +.||++|.|.+.-|+||.|--
T Consensus 71 e~i~l~G~VlD~~G------~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~ 143 (226)
T COG3485 71 ERILLEGRVLDGNG------RPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPW 143 (226)
T ss_pred ceEEEEEEEECCCC------CCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccC
Confidence 78999999987776 899999999966655553331222222 23 568999999999999999843
No 24
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=90.17 E-value=1.2 Score=36.34 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=30.8
Q ss_pred EEeCCccceEeCcccCCceEEEEEE--CceeeeeeeeeeEEEecCce
Q 006741 379 TKANKRGYFSIKNVRQGDYNLYAWI--PGIVGDYKYSANITVRAGSN 423 (633)
Q Consensus 379 t~td~~G~FtI~nVrpGtY~L~a~~--~G~~G~~~~~~~VtV~aG~t 423 (633)
..+|++|.|.|.+++||+|.|.--. .|+.-. .....++|..++.
T Consensus 21 ~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~-~~~~~~~i~~~~~ 66 (70)
T PF05738_consen 21 VTTDENGKYTFKNLPPGTYTLKETKAPDGYQLD-DTPYEFTITEDGD 66 (70)
T ss_dssp EEGGTTSEEEEEEEESEEEEEEEEETTTTEEEE-ECEEEEEECTTSC
T ss_pred EEECCCCEEEEeecCCeEEEEEEEECCCCCEEC-CCceEEEEecCCE
Confidence 5689999999999999999999875 343311 1222366665554
No 25
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=89.39 E-value=2.1 Score=37.47 Aligned_cols=62 Identities=21% Similarity=0.258 Sum_probs=47.1
Q ss_pred CceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEEECceee
Q 006741 330 QRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVG 408 (633)
Q Consensus 330 qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G 408 (633)
....|+|+++ .++ .|..+|+|-|-++... |- =-..++++|.|.+ -..||+.+|.+-+++-.|
T Consensus 6 ke~VItG~V~-~~G------~Pv~gAyVRLLD~sgE--Ft-------aEvvts~~G~FRF-faapG~WtvRal~~~g~~ 67 (85)
T PF07210_consen 6 KETVITGRVT-RDG------EPVGGAYVRLLDSSGE--FT-------AEVVTSATGDFRF-FAAPGSWTVRALSRGGNG 67 (85)
T ss_pred ceEEEEEEEe-cCC------cCCCCeEEEEEcCCCC--eE-------EEEEecCCccEEE-EeCCCceEEEEEccCCCC
Confidence 3578999998 666 8999999999654321 21 2245689999999 489999999999876554
No 26
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=88.70 E-value=0.93 Score=45.26 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=47.1
Q ss_pred CceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccC-------ccceeE--EEeCCccceEeCcccCCceE
Q 006741 330 QRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDS-------KGYQFW--TKANKRGYFSIKNVRQGDYN 398 (633)
Q Consensus 330 qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~-------k~yqyw--t~td~~G~FtI~nVrpGtY~ 398 (633)
+.=.|+|+|+-.++ +|..+|.|=+......|....+. .+++.| ..||++|+|++.-|+||-|.
T Consensus 35 ~~l~l~G~V~D~~g------~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~ 106 (185)
T cd03463 35 ERITLEGRVYDGDG------APVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVP 106 (185)
T ss_pred CEEEEEEEEECCCC------CCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcC
Confidence 45689999976555 89999999997766555333211 345455 55899999999999999986
No 27
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=88.18 E-value=1.1 Score=43.70 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=47.4
Q ss_pred CceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccC--------ccceeE--EEeCCccceEeCcccCCceEE
Q 006741 330 QRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDS--------KGYQFW--TKANKRGYFSIKNVRQGDYNL 399 (633)
Q Consensus 330 qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~--------k~yqyw--t~td~~G~FtI~nVrpGtY~L 399 (633)
++=.|+|+|+-.++ .|..+|.|=+......|....+. .++..| ..||++|.|++.-|+||-|.+
T Consensus 14 ~~l~l~g~V~D~~g------~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~ 87 (158)
T cd03459 14 ERIILEGRVLDGDG------RPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPW 87 (158)
T ss_pred cEEEEEEEEECCCC------CCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCC
Confidence 35679999976555 89999999997666555333221 345545 458999999999999999983
No 28
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=87.90 E-value=0.6 Score=37.65 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=21.8
Q ss_pred eEEEeCCcc-ceEeCcccCCceEEEEEEC
Q 006741 377 FWTKANKRG-YFSIKNVRQGDYNLYAWIP 404 (633)
Q Consensus 377 ywt~td~~G-~FtI~nVrpGtY~L~a~~~ 404 (633)
=|....... .+++.+.+||+|+|.|.+.
T Consensus 20 ~W~~~~~~~~~~~~~~L~~G~Y~l~V~a~ 48 (66)
T PF07495_consen 20 EWITLGSYSNSISYTNLPPGKYTLEVRAK 48 (66)
T ss_dssp SEEEESSTS-EEEEES--SEEEEEEEEEE
T ss_pred eEEECCCCcEEEEEEeCCCEEEEEEEEEE
Confidence 366777777 9999999999999999974
No 29
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=86.17 E-value=1.6 Score=50.71 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=53.5
Q ss_pred eEEEEEEecCCCCCccEEEEEEeccc-----CCCceEEEEcCCCCCCCCCccccccCCCeeeeeEEEeeeEEEEEEeeCC
Q 006741 523 TWRIIFELKHLNNNGHYTLQLALASA-----TDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSV 597 (633)
Q Consensus 523 ~w~I~F~L~~~~~~~~~tLriala~a-----~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~ 597 (633)
.-.|.|.+...+....++|+|.+.-+ ..+.++|.|||..... ..+..++. .....+|+||..
T Consensus 30 ~~~~~f~v~~~~~v~~a~L~L~~~~S~~l~~~~S~L~V~lNg~~v~s-----~~l~~~~~--------~~~~~~i~Ip~~ 96 (605)
T PF03170_consen 30 SRTIYFPVPADWVVTKATLNLSYTYSPSLLPERSQLTVSLNGQPVGS-----IPLDAESA--------QPQTVTIPIPPA 96 (605)
T ss_pred ceEEEEEcCCCccccceEEEEEEEECcccCCCcceEEEEECCEEeEE-----EecCcCCC--------CceEEEEecChh
Confidence 35677777766654567777777654 2378999999985541 11222222 246789999999
Q ss_pred ceeeeecEEEEEEeeC
Q 006741 598 LLNRGRNTIYLTQSRS 613 (633)
Q Consensus 598 ~L~~G~NtI~lt~~~g 613 (633)
|..|.|.|.|....-
T Consensus 97 -l~~g~N~l~~~~~~~ 111 (605)
T PF03170_consen 97 -LIKGFNRLTFEFIGH 111 (605)
T ss_pred -hcCCceEEEEEEEec
Confidence 999999999987653
No 30
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=86.02 E-value=1.6 Score=45.45 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=46.7
Q ss_pred CceEEEEEEEEccccccccccccCccEEEecCCCCCCccccc---Ccccee--EEEeCCccceEeCcccCCceEE
Q 006741 330 QRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERD---SKGYQF--WTKANKRGYFSIKNVRQGDYNL 399 (633)
Q Consensus 330 qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~---~k~yqy--wt~td~~G~FtI~nVrpGtY~L 399 (633)
+.=.|+|+|+-.++ .|..+|.|=+.....+|....+ .....+ +..||++|.|.+.-|+||-|-+
T Consensus 97 ~~l~v~G~V~D~~G------~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~Ypi 165 (246)
T TIGR02465 97 KPLLIRGTVRDLSG------TPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQI 165 (246)
T ss_pred cEEEEEEEEEcCCC------CCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCC
Confidence 45789999976665 8999999999666655533321 122333 5778999999999999999853
No 31
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=84.87 E-value=2.1 Score=42.57 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=39.8
Q ss_pred CceEEEEEEEEccccccccccccCccEEEecCCCCCCccccc-------CccceeEEEeCCccceEeCcccCCceEE
Q 006741 330 QRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERD-------SKGYQFWTKANKRGYFSIKNVRQGDYNL 399 (633)
Q Consensus 330 qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~-------~k~yqywt~td~~G~FtI~nVrpGtY~L 399 (633)
+.=.|.|+|+-.++ .|..+|.|=+......|....+ .....=+..||++|.|++.-|+||.|.+
T Consensus 28 ~~l~l~G~V~D~~g------~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~ 98 (183)
T PF00775_consen 28 EPLVLHGRVIDTDG------KPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYPI 98 (183)
T ss_dssp -EEEEEEEEEETTS------SB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EEE
T ss_pred CEEEEEEEEECCCC------CCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCCC
Confidence 35589999987766 8999999999666555533221 1123334678999999999999999974
No 32
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=84.83 E-value=1.9 Score=43.32 Aligned_cols=65 Identities=18% Similarity=0.331 Sum_probs=47.2
Q ss_pred CCceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccC--------ccceeE--EEeCCccceEeCcccCCceE
Q 006741 329 NQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDS--------KGYQFW--TKANKRGYFSIKNVRQGDYN 398 (633)
Q Consensus 329 ~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~--------k~yqyw--t~td~~G~FtI~nVrpGtY~ 398 (633)
.++=.++|+|+-.++ .|..+|.|=|.+....|....+. .+++-| ..||++|+|.+.-|+||.|-
T Consensus 37 G~~l~l~G~V~D~~g------~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp 110 (193)
T TIGR02423 37 GERIRLEGRVLDGDG------HPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVP 110 (193)
T ss_pred CCEEEEEEEEECCCC------CCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcC
Confidence 345789999975554 89999999997666555333211 244444 45799999999999999885
Q ss_pred E
Q 006741 399 L 399 (633)
Q Consensus 399 L 399 (633)
.
T Consensus 111 ~ 111 (193)
T TIGR02423 111 D 111 (193)
T ss_pred C
Confidence 3
No 33
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=84.12 E-value=3.8 Score=42.04 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=47.3
Q ss_pred CCCCceEEEEEEEEccccccccccccCccEEEecCCCCCCccccc--------CccceeE--EEeCCccceEeCcccCCc
Q 006741 327 KRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERD--------SKGYQFW--TKANKRGYFSIKNVRQGD 396 (633)
Q Consensus 327 ~~~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~--------~k~yqyw--t~td~~G~FtI~nVrpGt 396 (633)
+..++=.|+|+|+-.++ .|..+|.|=+.+...+|....+ ..++.-+ ..||++|.|.+.-|+||-
T Consensus 56 ~~G~~i~l~G~V~D~~g------~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~ 129 (220)
T TIGR02422 56 PIGERIIVHGRVLDEDG------RPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGP 129 (220)
T ss_pred CCCCEEEEEEEEECCCC------CCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCC
Confidence 33467889999976555 8999999999666555533321 1233323 457999999999999999
Q ss_pred eEE
Q 006741 397 YNL 399 (633)
Q Consensus 397 Y~L 399 (633)
|..
T Consensus 130 Y~~ 132 (220)
T TIGR02422 130 YPW 132 (220)
T ss_pred ccC
Confidence 943
No 34
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=83.45 E-value=1.9 Score=45.00 Aligned_cols=65 Identities=8% Similarity=0.076 Sum_probs=45.4
Q ss_pred CCceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccC---cccee--EEEeCCccceEeCcccCCceEE
Q 006741 329 NQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDS---KGYQF--WTKANKRGYFSIKNVRQGDYNL 399 (633)
Q Consensus 329 ~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~---k~yqy--wt~td~~G~FtI~nVrpGtY~L 399 (633)
.++=.|+|+|+-.++ .|..+|.|=+.+....|....+. ....+ ...||++|.|.+.-|+||.|-+
T Consensus 97 G~~l~l~G~V~D~~G------~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~Ypi 166 (247)
T cd03462 97 HKPLLFRGTVKDLAG------APVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQI 166 (247)
T ss_pred CCEEEEEEEEEcCCC------CCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcCC
Confidence 356789999976665 89999999986655554322111 11111 4568999999999999999843
No 35
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=82.64 E-value=3.1 Score=42.74 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=47.1
Q ss_pred CCceEEEEEEEEccccccccccccCccEEEecCCCCCCccccc--------CccceeE--EEeCCccceEeCcccCCceE
Q 006741 329 NQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERD--------SKGYQFW--TKANKRGYFSIKNVRQGDYN 398 (633)
Q Consensus 329 ~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~--------~k~yqyw--t~td~~G~FtI~nVrpGtY~ 398 (633)
.++=.|+|+|+-.++ .|..+|.|=+.+....|-...+ ..+++.+ ..||++|.|.|.-|+||.|.
T Consensus 63 G~~i~l~G~V~D~~G------~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp 136 (220)
T cd03464 63 GERIIVHGRVLDEDG------RPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYP 136 (220)
T ss_pred CCEEEEEEEEECCCC------CCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCcc
Confidence 456789999976555 8999999999766555533321 1234433 46799999999999999994
Q ss_pred E
Q 006741 399 L 399 (633)
Q Consensus 399 L 399 (633)
.
T Consensus 137 ~ 137 (220)
T cd03464 137 W 137 (220)
T ss_pred C
Confidence 3
No 36
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=79.99 E-value=3 Score=44.32 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=44.9
Q ss_pred CCceEEEEEEEEccccccccccccCccEEEecCCCCCCccccc---CccceeE--EEeCCccceEeCcccCCceEE
Q 006741 329 NQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERD---SKGYQFW--TKANKRGYFSIKNVRQGDYNL 399 (633)
Q Consensus 329 ~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~---~k~yqyw--t~td~~G~FtI~nVrpGtY~L 399 (633)
.++=.|+|+|+-.++ +|..+|.|=+......|....+ ...+.+. ..||++|.|.+.-|+||-|-+
T Consensus 130 G~pl~v~G~V~D~~G------~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~Ypi 199 (281)
T TIGR02438 130 GTPLVFSGQVTDLDG------NGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQI 199 (281)
T ss_pred CCEEEEEEEEEcCCC------CCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 346789999975565 8999999999554444432211 1122223 567999999999999999864
No 37
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=79.75 E-value=5 Score=39.59 Aligned_cols=62 Identities=23% Similarity=0.141 Sum_probs=47.2
Q ss_pred ceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEEE
Q 006741 331 RGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWI 403 (633)
Q Consensus 331 RGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~~ 403 (633)
-..++.+|+. +| +|..++.|.+...+. |. +........+||++|.++|+=-+||.|-|.+..
T Consensus 150 g~~~~~~vl~-~G------kPl~~a~V~~~~~~~---~~-~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~ 211 (215)
T PF10670_consen 150 GDPLPFQVLF-DG------KPLAGAEVEAFSPGG---WY-DVEHEAKTLKTDANGRATFTLPRPGLWLIRASH 211 (215)
T ss_pred CCEEEEEEEE-CC------eEcccEEEEEEECCC---cc-ccccceEEEEECCCCEEEEecCCCEEEEEEEEE
Confidence 4678999975 55 899999999865542 22 112226888999999999998899999998863
No 38
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=79.37 E-value=4.9 Score=48.24 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=38.4
Q ss_pred EEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEEEC
Q 006741 333 GVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIP 404 (633)
Q Consensus 333 tVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~~~ 404 (633)
+|+|+|+...+ -.+.++.|-|-.. .+----|.|+++|.|.+.+|.||+|.+.|..+
T Consensus 120 sv~GkVlgaag------gGpagV~velrs~----------e~~iast~T~~~Gky~f~~iiPG~Yev~ashp 175 (1165)
T KOG1948|consen 120 SVRGKVLGAAG------GGPAGVLVELRSQ----------EDPIASTKTEDGGKYEFRNIIPGKYEVSASHP 175 (1165)
T ss_pred eEeeEEeeccC------CCcccceeecccc----------cCcceeeEecCCCeEEEEecCCCceEEeccCc
Confidence 67777754432 2344555655221 22234578999999999999999999999854
No 39
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=78.79 E-value=3.9 Score=43.49 Aligned_cols=65 Identities=11% Similarity=0.189 Sum_probs=47.5
Q ss_pred CCceEEEEEEEEccccccccccccCccEEEecCCCCCCcccc---cCccceeE--EEeCCccceEeCcccCCceEE
Q 006741 329 NQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWER---DSKGYQFW--TKANKRGYFSIKNVRQGDYNL 399 (633)
Q Consensus 329 ~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~---~~k~yqyw--t~td~~G~FtI~nVrpGtY~L 399 (633)
.++=.|+|+|+-.++ .|..+|.|=+......|.... ...+++.+ ..||++|.|.+.-|+||-|-+
T Consensus 122 Gepl~l~G~V~D~~G------~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~Ypi 191 (282)
T cd03460 122 GETLVMHGTVTDTDG------KPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGV 191 (282)
T ss_pred CCEEEEEEEEECCCC------CCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcC
Confidence 456789999976666 899999999976665553321 12233333 668999999999999999953
No 40
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=78.44 E-value=13 Score=39.08 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=46.6
Q ss_pred CCceEEEEEEEEccccccccccccCccEEEecCCCCCCccccc---CccceeE--EEeCCccceEeCcccCCceEE
Q 006741 329 NQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERD---SKGYQFW--TKANKRGYFSIKNVRQGDYNL 399 (633)
Q Consensus 329 ~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~---~k~yqyw--t~td~~G~FtI~nVrpGtY~L 399 (633)
.++=.|+|+|+-.++ .|..+|.|=+......|....+ ...+..+ ..||++|.|.+.-|+||-|-+
T Consensus 102 G~~l~l~G~V~D~~G------~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypi 171 (256)
T cd03458 102 GEPLFVHGTVTDTDG------KPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPI 171 (256)
T ss_pred CcEEEEEEEEEcCCC------CCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccC
Confidence 456689999976665 8889999998666555533221 2233333 568999999999999999954
No 41
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=78.39 E-value=20 Score=32.62 Aligned_cols=86 Identities=21% Similarity=0.368 Sum_probs=47.8
Q ss_pred EEEE-ecCCCCCccEEEEEEeccc-CCCceEEEEcCCCCCCCCCccccccCCCeeeeeEEEeeeEEEEEEeeCCceeeee
Q 006741 526 IIFE-LKHLNNNGHYTLQLALASA-TDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGR 603 (633)
Q Consensus 526 I~F~-L~~~~~~~~~tLriala~a-~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 603 (633)
|.|+ ++-. ..+.+++.|..+.. ..+.++|++++.+.. ...+..++.... . -.++..+.+|+ |.+|.
T Consensus 42 ~~y~~vd~~-~~g~~~i~~~~as~~~~~~i~v~~d~~~G~--~~~~~~~p~tg~-----~-~~~~~~~~~v~---~~~G~ 109 (129)
T smart00606 42 IAYKDVDFG-SSGAYTFTARVASGNAGGSIELRLDSPTGT--LVGTVDVPSTGG-----W-QTYQTVSATVT---LPAGV 109 (129)
T ss_pred EEEEeEecC-CCCceEEEEEEeCCCCCceEEEEECCCCCc--EEEEEEeCCCCC-----C-ccCEEEEEEEc---cCCce
Confidence 4555 4322 23677777777765 446899999975432 111222232211 0 12333444443 44899
Q ss_pred cEEEEEEeeCCCCCceEEEEEEEE
Q 006741 604 NTIYLTQSRSRSPFQGVLYDYIRL 627 (633)
Q Consensus 604 NtI~lt~~~g~s~~~~vmyD~IrL 627 (633)
++|+|....++ ++..|.+++
T Consensus 110 ~~l~~~~~~~~----~~~ld~~~F 129 (129)
T smart00606 110 HDVYLVFKGGN----YFNIDWFRF 129 (129)
T ss_pred EEEEEEEECCC----cEEEEEEEC
Confidence 99999876553 277777754
No 42
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=77.42 E-value=4.8 Score=42.90 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=47.0
Q ss_pred CCceEEEEEEEEccccccccccccCccEEEecCCCCCCcccc---cCccceeE--EEeCCccceEeCcccCCceEE
Q 006741 329 NQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWER---DSKGYQFW--TKANKRGYFSIKNVRQGDYNL 399 (633)
Q Consensus 329 ~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~---~~k~yqyw--t~td~~G~FtI~nVrpGtY~L 399 (633)
.++=.|+|+|+-.++ .|..+|.|=+......|.... ...+++.+ ..||++|.|.+.-|+||-|-+
T Consensus 126 G~pl~v~G~V~D~~G------~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~Ypi 195 (285)
T TIGR02439 126 GETLFLHGQVTDADG------KPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGC 195 (285)
T ss_pred CcEEEEEEEEECCCC------CCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcC
Confidence 345689999976665 899999999976665553321 12333343 568999999999999999853
No 43
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=77.24 E-value=3.7 Score=37.83 Aligned_cols=53 Identities=25% Similarity=0.177 Sum_probs=37.8
Q ss_pred cccCccEEEecCCCCCCcccccCccceeEEEeCCccceE-----eCcccCCceEEEEEECceeeeeee
Q 006741 350 MWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFS-----IKNVRQGDYNLYAWIPGIVGDYKY 412 (633)
Q Consensus 350 ~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~Ft-----I~nVrpGtY~L~a~~~G~~G~~~~ 412 (633)
+||+++.|-|..... +.|+ .-.-+.||++|+.. ...+.||.|+|..- .|+|..
T Consensus 14 ~PAagv~V~L~~~~~-~~~~-----~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~----~g~Yf~ 71 (112)
T TIGR02962 14 KPAAGVPVTLYRLDG-SGWT-----PLAEGVTNADGRCPDLLPEGETLAAGIYKLRFD----TGDYFA 71 (112)
T ss_pred ccCCCCEEEEEEecC-CCeE-----EEEEEEECCCCCCcCcccCcccCCCeeEEEEEE----hhhhhh
Confidence 899999999964321 1243 12346799999987 45678999999997 666554
No 44
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=77.21 E-value=87 Score=39.28 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=36.5
Q ss_pred CCeEEEEcCCEEEEEECCeEEEEEeCCceeEEEEEECCeeccc
Q 006741 4 LGVQLNTKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVL 46 (633)
Q Consensus 4 ~~v~l~~~g~~~~vidNg~l~~tv~k~~G~itsi~y~G~~nll 46 (633)
.++++.+++.. ++|.++.++++++|.+|.|+|++++|++.|.
T Consensus 715 ~~~~~~~~~~~-~~i~~~~~~~~fdk~tG~l~s~~~~g~~ll~ 756 (1021)
T PRK10340 715 RPLTLEEDRLS-CTVRGYNFAITFSKVSGKLTSWQVNGESLLT 756 (1021)
T ss_pred CCeeEEecCCE-EEEEeCCEEEEEECCcceEEEEEeCCeeeec
Confidence 34677888888 9999999999999999999999999996443
No 45
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=76.01 E-value=3.8 Score=49.21 Aligned_cols=75 Identities=17% Similarity=0.106 Sum_probs=47.8
Q ss_pred EEEEEecCCCCCccEEEEEEeccc-----CCCceEEEEcCCCCCCCCCccccccCCCeeeeeEEEeeeEEEEEEeeCCce
Q 006741 525 RIIFELKHLNNNGHYTLQLALASA-----TDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLL 599 (633)
Q Consensus 525 ~I~F~L~~~~~~~~~tLriala~a-----~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 599 (633)
.|.|.+...+....++|+|...-+ ..++++|.|||..... ..+..++ .|.....+|+||+ .|
T Consensus 84 ~i~f~vp~d~~v~~A~L~L~y~~Sp~l~~~~S~L~V~lNg~~v~s-----~pL~~~~-------~~~~~~~~i~IP~-~l 150 (756)
T PRK11114 84 GIEFGVRSDEVVTKARLNLEYTYSPALLPDLSHLKVYLNGELMGT-----LPLDKEQ-------LGKKVLAQLPIDP-RF 150 (756)
T ss_pred eeEeecCccccccCcEEEEEEEECCCCCCCCCeEEEEECCEEeEE-----EecCccc-------CCCcceeEEecCH-HH
Confidence 566666655533445555554443 3478999999975531 1112111 2455788999999 56
Q ss_pred eeeecEEEEEEee
Q 006741 600 NRGRNTIYLTQSR 612 (633)
Q Consensus 600 ~~G~NtI~lt~~~ 612 (633)
..|.|.|.|....
T Consensus 151 ~~g~N~L~~~~~~ 163 (756)
T PRK11114 151 ITDFNRLRLEFIG 163 (756)
T ss_pred cCCCceEEEEEec
Confidence 6899999998643
No 46
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=75.49 E-value=6.3 Score=37.46 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=45.5
Q ss_pred EEEEEEecCCCCCccEEEEEEecccCCCceEEEEcCCCCCCCCCccccccCCCeeeeeEEEeeeEEEEEEeeCCceeeee
Q 006741 524 WRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGR 603 (633)
Q Consensus 524 w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 603 (633)
.+=+|+|++......+.|++.-. ...-.|.|||..+. ...+.+..++++|+. .|+.|.
T Consensus 72 Yr~~f~lp~~~~~~~~~L~f~gv---~~~a~v~vNG~~vg------------------~~~~~~~~~~~dIt~-~l~~g~ 129 (167)
T PF02837_consen 72 YRRTFTLPADWKGKRVFLRFEGV---DYAAEVYVNGKLVG------------------SHEGGYTPFEFDITD-YLKPGE 129 (167)
T ss_dssp EEEEEEESGGGTTSEEEEEESEE---ESEEEEEETTEEEE------------------EEESTTS-EEEECGG-GSSSEE
T ss_pred EEEEEEeCchhcCceEEEEeccc---eEeeEEEeCCeEEe------------------eeCCCcCCeEEeChh-hccCCC
Confidence 45568887755333455555433 35678999996432 123557789999975 889998
Q ss_pred -cEEEEEEeeC
Q 006741 604 -NTIYLTQSRS 613 (633)
Q Consensus 604 -NtI~lt~~~g 613 (633)
|+|.+.+.+-
T Consensus 130 ~N~l~V~v~~~ 140 (167)
T PF02837_consen 130 ENTLAVRVDNW 140 (167)
T ss_dssp EEEEEEEEESS
T ss_pred CEEEEEEEeec
Confidence 9999999853
No 47
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=75.07 E-value=6.1 Score=41.93 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=46.3
Q ss_pred CCceEEEEEEEEccccccccccccCccEEEecCCCCCCccccc---CccceeE--EEeCCccceEeCcccCCceEE
Q 006741 329 NQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERD---SKGYQFW--TKANKRGYFSIKNVRQGDYNL 399 (633)
Q Consensus 329 ~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~---~k~yqyw--t~td~~G~FtI~nVrpGtY~L 399 (633)
.++=.|+|+|+-.++ .|..+|.|=+......|....+ ..+...+ ..||++|.|.+.-|+||-|-+
T Consensus 118 G~~l~v~G~V~D~~G------~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypi 187 (277)
T cd03461 118 GEPCFVHGRVTDTDG------KPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPI 187 (277)
T ss_pred CCEEEEEEEEEcCCC------CCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 456789999976665 8999999998665555533221 1222232 568999999999999999975
No 48
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=74.47 E-value=58 Score=34.22 Aligned_cols=113 Identities=14% Similarity=0.284 Sum_probs=61.9
Q ss_pred EEEECCeEEEEEeCCce-eEEEEEECCeeccc---cccCCC----Ccce----eEEEEecCCCCCCc-----cc---ccc
Q 006741 16 VVMDNGLVQVTLSNPEG-EVIGIKYNEIDNVL---ETQNEE----DNRG----YWDVVWYEPEKQGS-----YD---KLI 75 (633)
Q Consensus 16 ~vidNg~l~~tv~k~~G-~itsi~y~G~~nll---~~~~~~----~~~G----Y~d~~w~~~g~~~~-----~~---~~~ 75 (633)
+.|+|+.++++|+-.-| .|.++.++|.+|++ ...... ...+ -.+=.|..|..... +- .+.
T Consensus 7 ~~l~N~~i~l~Vtp~~GgRIl~~~~~g~~N~~~~~~~~~~~~~~~~~~~~~~~GGhrlW~~Pe~~~r~~~~~~~Pd~~ld 86 (274)
T PF14315_consen 7 LRLSNGDIELIVTPDVGGRILSFGLNGGENLFGEANEIQPAPGVSGDSGWINYGGHRLWPSPENPPRTSKWVWPPDPVLD 86 (274)
T ss_pred EEEECCCEEEEEecCCCCEEEEEEeCCCceEEeeccccccccccCCcccccCCCcceeecCCCCccccccccCCCccccc
Confidence 89999999999987666 99999999988998 111000 0011 12333654431000 00 011
Q ss_pred cceEEEEeecCCEEEEEEEEeeccccCCCccccceeEEEEEEcCcceeEEEEEeeccCCCC
Q 006741 76 ATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWP 136 (633)
Q Consensus 76 gt~~~vi~~~~~~i~vs~~~~~~~s~~g~~~~~~l~~~~v~r~g~sgiY~y~i~~~~~~~p 136 (633)
....++.. .++.| .++..-+| ..-+.+++.+-|..+.+.+..=....+...+|
T Consensus 87 ~~p~~~~~-~~~~v--~L~s~~~~-----~tgiq~~~~i~l~~~~~~i~v~~~i~N~~~~~ 139 (274)
T PF14315_consen 87 NGPYEVEI-DDDGV--RLTSPPSP-----KTGIQKERTITLDADRPSIEVTHRITNIGDWP 139 (274)
T ss_pred CCceeEEE-cCCEE--EEecCCCC-----ccCcEEEEEEEECCCCCEEEEEEEEEeCCCCc
Confidence 23344333 33333 44443222 22346777888888877776666565555443
No 49
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=72.52 E-value=12 Score=34.07 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=34.2
Q ss_pred EEEE-EEecccCCCceEEEEcCCCCCCCCCccccccCCCeeeeeEEE-eeeEEEEEEeeCCceeeeecEEEEE
Q 006741 539 YTLQ-LALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIH-GLYRLYSIDVPSVLLNRGRNTIYLT 609 (633)
Q Consensus 539 ~tLr-iala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~-G~~~~~~~~ipa~~L~~G~NtI~lt 609 (633)
..|+ +........+.+|.|||+.+.. ++ +..-..+|.||+++|+.++|.|.+-
T Consensus 50 ~~~~~l~~~~g~~~~~~vwVNG~~~G~------------------~~~~~g~q~tf~~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 50 TSLTPLNIQGGNAFRASVWVNGWFLGS------------------YWPGIGPQTTFSVPAGILKYGNNVLVVL 104 (111)
T ss_dssp EEEE-EEECSSTTEEEEEEETTEEEEE------------------EETTTECCEEEEE-BTTBTTCEEEEEEE
T ss_pred eeEEEEeccCCCceEEEEEECCEEeee------------------ecCCCCccEEEEeCceeecCCCEEEEEE
Confidence 4455 5555567789999999985531 11 1111289999999999985555443
No 50
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=70.97 E-value=1e+02 Score=32.40 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=24.6
Q ss_pred EECCeEEEEEeCCceeEEEEEECCeeccc
Q 006741 18 MDNGLVQVTLSNPEGEVIGIKYNEIDNVL 46 (633)
Q Consensus 18 idNg~l~~tv~k~~G~itsi~y~G~~nll 46 (633)
|.++-..++|+|.+|.++|++|+|++ ||
T Consensus 2 V~g~~f~~~Fdk~~G~l~s~~~~g~~-ll 29 (276)
T PF02929_consen 2 VSGKDFSYVFDKKTGTLTSYKYNGKE-LL 29 (276)
T ss_dssp EEETTEEEEEETTTTCEEEEEETTEE-EE
T ss_pred CccCCEEEEEECCCCeEEEEEECCEE-ee
Confidence 56677899999999999999999995 55
No 51
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=70.62 E-value=6.5 Score=36.35 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=37.3
Q ss_pred cccCccEEEecCCCCCCcccccCccceeEEEeCCccceEe----CcccCCceEEEEEECceeeeeee
Q 006741 350 MWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSI----KNVRQGDYNLYAWIPGIVGDYKY 412 (633)
Q Consensus 350 ~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI----~nVrpGtY~L~a~~~G~~G~~~~ 412 (633)
+||+++.|-|......+.|+ .---++||+||+..- ..+.+|.|+|..- .|+|..
T Consensus 14 ~PAagv~V~L~~~~~~~~w~-----~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~----t~~Yf~ 71 (113)
T cd05469 14 SPAANVAIKVFRKTADGSWE-----IFATGKTNEDGELHGLITEEEFXAGVYRVEFD----TKSYWK 71 (113)
T ss_pred ccCCCCEEEEEEecCCCceE-----EEEEEEECCCCCccCccccccccceEEEEEEe----hHHhHh
Confidence 89999999996432112344 223467999999852 3568999999997 565543
No 52
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=69.06 E-value=3.5 Score=37.98 Aligned_cols=48 Identities=21% Similarity=0.129 Sum_probs=33.0
Q ss_pred cccCccEEEecCCCCCCcccccCccceeEEEeCCccce-----EeCcccCCceEEEEE
Q 006741 350 MWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYF-----SIKNVRQGDYNLYAW 402 (633)
Q Consensus 350 ~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~F-----tI~nVrpGtY~L~a~ 402 (633)
+||.++.|-|....+.+.|+ --.-+.||++|+. .-..+.+|.|.|..-
T Consensus 14 ~PA~gv~V~L~~~~~~~~~~-----~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~ 66 (112)
T PF00576_consen 14 KPAAGVPVTLYRLDSDGSWT-----LLAEGVTDADGRIKQPLLEGESLEPGIYKLVFD 66 (112)
T ss_dssp EE-TT-EEEEEEEETTSCEE-----EEEEEEBETTSEESSTSSETTTS-SEEEEEEEE
T ss_pred CCccCCEEEEEEecCCCCcE-----EEEEEEECCCCcccccccccccccceEEEEEEE
Confidence 89999999996544334555 2234678999987 345788999999987
No 53
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=67.85 E-value=18 Score=41.03 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=52.9
Q ss_pred eEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEEECceeeeee
Q 006741 332 GGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYK 411 (633)
Q Consensus 332 GtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~ 411 (633)
--|+|-|+-..| .|-.+|+|-+..-..+ .+|..+|.|=- =..||.|.|+|.++|+. .
T Consensus 378 ~GIkG~V~D~~G------~~I~NA~IsV~ginHd-------------v~T~~~GDYWR-LL~PG~y~vta~A~Gy~---~ 434 (500)
T KOG2649|consen 378 RGIKGLVFDDTG------NPIANATISVDGINHD-------------VTTAKEGDYWR-LLPPGKYIITASAEGYD---P 434 (500)
T ss_pred hccceeEEcCCC------CccCceEEEEecCcCc-------------eeecCCCceEE-eeCCcceEEEEecCCCc---c
Confidence 358999876555 8999999998654422 23455665432 37899999999997765 5
Q ss_pred eeeeEEEecCceeeecceEecC
Q 006741 412 YSANITVRAGSNINLGVLVYEP 433 (633)
Q Consensus 412 ~~~~VtV~aG~t~~l~~l~~~~ 433 (633)
...+|+|..-..+.. ++++.+
T Consensus 435 ~tk~v~V~~~~a~~~-df~L~~ 455 (500)
T KOG2649|consen 435 VTKTVTVPPDRAARV-NFTLQR 455 (500)
T ss_pred eeeEEEeCCCCccce-eEEEec
Confidence 666788886333333 577763
No 54
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=67.44 E-value=1.4e+02 Score=37.41 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=36.4
Q ss_pred CeEEEEcCCEEEEEECCeEEEEEeCCceeEEEEEECCeecccc
Q 006741 5 GVQLNTKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLE 47 (633)
Q Consensus 5 ~v~l~~~g~~~~vidNg~l~~tv~k~~G~itsi~y~G~~nll~ 47 (633)
.+++.+.+.. ++|.++.++++++|.+|.++|++++|.|.|.+
T Consensus 741 ~~~~~~~~~~-~~i~~~~~~~~f~~~~G~l~s~~~~g~~~l~~ 782 (1027)
T PRK09525 741 APQLTQDEQD-FCIELGNQRWQFNRQSGLLSQWWVGGKEQLLT 782 (1027)
T ss_pred CceEEEcCCe-EEEEECCEEEEEECCCceEEEEEECCEEeecc
Confidence 3467788888 99999999999999999999999999975543
No 55
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=66.56 E-value=12 Score=31.93 Aligned_cols=56 Identities=20% Similarity=0.119 Sum_probs=33.5
Q ss_pred EEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEE
Q 006741 335 FGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAW 402 (633)
Q Consensus 335 sG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~ 402 (633)
+|+|.=. + .|+.++.|-|-.... . ...+.-=-+.||++|+|+|..-......+.-|
T Consensus 1 ~G~L~C~-~------~P~~~~~V~L~e~d~---~--~~Ddll~~~~Td~~G~F~l~G~~~e~~~i~P~ 56 (80)
T PF01060_consen 1 KGQLMCG-G------KPAKNVKVKLWEDDY---F--DPDDLLDETKTDSDGNFELSGSTNEFTTIEPY 56 (80)
T ss_pred CeEEEeC-C------ccCCCCEEEEEECCC---C--CCCceeEEEEECCCceEEEEEEccCCccccEE
Confidence 4777544 3 799999999943321 0 01222223778999999997654444444333
No 56
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=65.12 E-value=1e+02 Score=31.42 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=29.3
Q ss_pred cccCCceEEEEEECce---ee----eeeeeeeEEEecCceeeecceEec
Q 006741 391 NVRQGDYNLYAWIPGI---VG----DYKYSANITVRAGSNINLGVLVYE 432 (633)
Q Consensus 391 nVrpGtY~L~a~~~G~---~G----~~~~~~~VtV~aG~t~~l~~l~~~ 432 (633)
..++|+|+|.|+ .|- .| .|..+++++|.+|+++.+. ++..
T Consensus 61 ~L~~G~Ytv~A~-~g~~~~~~~d~pyy~G~~~f~I~~g~~t~v~-v~C~ 107 (235)
T PF14900_consen 61 ELPVGSYTVKAS-YGDNVAAGFDKPYYEGSTTFTIEKGETTTVS-VTCK 107 (235)
T ss_pred eecCCcEEEEEE-cCCCccccccCceeecceeEEEecCCcEEEE-EEEE
Confidence 367999999999 541 12 2456668999999998874 6555
No 57
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=63.59 E-value=11 Score=35.30 Aligned_cols=68 Identities=18% Similarity=0.073 Sum_probs=43.5
Q ss_pred ceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceE----eCcccCCceEEEEEECce
Q 006741 331 RGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFS----IKNVRQGDYNLYAWIPGI 406 (633)
Q Consensus 331 RGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~Ft----I~nVrpGtY~L~a~~~G~ 406 (633)
|-.++=.|+-.- ..+||+++.|-|......+.|+ ..--++||++|+.. -..+.+|.|+|..-
T Consensus 6 ~~~ittHVLDt~-----~G~PAaGV~V~L~~~~~~~~w~-----~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~---- 71 (121)
T cd05821 6 KCPLMVKVLDAV-----RGSPAANVAVKVFKKTADGSWE-----PFASGKTTETGEIHGLTTDEQFTEGVYKVEFD---- 71 (121)
T ss_pred CCCcEEEEEECC-----CCccCCCCEEEEEEecCCCceE-----EEEEEEECCCCCCCCccCccccCCeeEEEEEe----
Confidence 455666554322 2389999999995422112354 23346799999874 23467899999997
Q ss_pred eeeeee
Q 006741 407 VGDYKY 412 (633)
Q Consensus 407 ~G~~~~ 412 (633)
.|+|-.
T Consensus 72 tg~Yf~ 77 (121)
T cd05821 72 TKAYWK 77 (121)
T ss_pred hhHhhh
Confidence 666553
No 58
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=63.47 E-value=12 Score=34.62 Aligned_cols=53 Identities=23% Similarity=0.179 Sum_probs=37.4
Q ss_pred cccCccEEEecCCCCCCcccccCccceeEEEeCCccceEe-----CcccCCceEEEEEECceeeeeee
Q 006741 350 MWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSI-----KNVRQGDYNLYAWIPGIVGDYKY 412 (633)
Q Consensus 350 ~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI-----~nVrpGtY~L~a~~~G~~G~~~~ 412 (633)
+||+++-|-|...... .|+ .-.-+.||+||+..- ..+.+|+|.|..- .|+|..
T Consensus 14 ~PAagv~V~L~~~~~~-~~~-----~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~----~~~Yf~ 71 (112)
T cd05822 14 KPAAGVAVTLYRLDGN-GWT-----LLATGVTNADGRCDDLLPPGAQLAAGTYKLTFD----TGAYFA 71 (112)
T ss_pred cccCCCEEEEEEecCC-CeE-----EEEEEEECCCCCccCcccccccCCCeeEEEEEE----hhhhhh
Confidence 8999999999643321 233 223367999999753 4588999999997 565543
No 59
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=61.68 E-value=1.2e+02 Score=31.12 Aligned_cols=94 Identities=16% Similarity=0.285 Sum_probs=48.8
Q ss_pred EEEECCeEEEEEeCCceeEEEEEECCee----------ccccccCCCCcceeEEEEecCCC-------CCCcccccccce
Q 006741 16 VVMDNGLVQVTLSNPEGEVIGIKYNEID----------NVLETQNEEDNRGYWDVVWYEPE-------KQGSYDKLIATD 78 (633)
Q Consensus 16 ~vidNg~l~~tv~k~~G~itsi~y~G~~----------nll~~~~~~~~~GY~d~~w~~~g-------~~~~~~~~~gt~ 78 (633)
|+|+|+.+.++|+..+|.|.++..+.-. .|++.... ...+..+.|.... ....|..-.. +
T Consensus 2 v~ven~~~~~~~s~~GG~i~~~~Lk~y~~~~~~~~~pv~L~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~-~ 78 (270)
T PF14849_consen 2 VTVENDLFKVTFSSKGGRIKSVELKKYKNTLDPDSKPVELVDDSDE--ENYPLAFGLVFNTGGAQLPTNDLYFSVSQK-S 78 (270)
T ss_dssp EEEE-SS-EEEEETBTTEEEEEEEEEEESSTT-SS-EEEECEEETT--EEEEEEEEEESTT--TTSGGS--B-B-S-S-E
T ss_pred EEEECCCEEEEEECCCCeEEEEEcCCCccccCCCCCceEEecCCCC--cceEEEEcccccCccccCCCccceEEEcCC-c
Confidence 8999999999999999999999876331 12221111 1123445554221 1122332222 2
Q ss_pred EEEEeecCCEEEEEEEEeeccccCCCccccceeEEEEEEcCc
Q 006741 79 FKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGV 120 (633)
Q Consensus 79 ~~vi~~~~~~i~vs~~~~~~~s~~g~~~~~~l~~~~v~r~g~ 120 (633)
. ++.+..+...|.|+..- + ..+.|++.|.+.+++
T Consensus 79 ~-~l~~~~~~~~vtf~~~~-----~--~g~~i~k~ytf~~~~ 112 (270)
T PF14849_consen 79 Y-TLKEGGDSQSVTFTAQL-----G--NGLTITKTYTFKPDS 112 (270)
T ss_dssp E-E--TT-SEEEEEEEEE------T--TS-EEEEEEEEETT-
T ss_pred e-eeccCCCceEEEEEEEC-----C--CCEEEEEEEEEcCCc
Confidence 2 23334456778887651 1 125899999999885
No 60
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=59.89 E-value=15 Score=42.95 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=51.2
Q ss_pred eeEEEEEEecCCC---CCccEEEEEEeccc-----CCCceEEEEcCCCCCCCCCccccccCCCeeeeeEEEeeeEEEEEE
Q 006741 522 TTWRIIFELKHLN---NNGHYTLQLALASA-----TDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSID 593 (633)
Q Consensus 522 ~~w~I~F~L~~~~---~~~~~tLriala~a-----~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ 593 (633)
.+..+.|.|+..- ......|.+..+.+ ..+++.|.|||.-+.. ..+.+ +-.+....+++.
T Consensus 324 ~~~~~~f~lP~dl~~~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~s-----~~L~~-------~~~~~~~~~~v~ 391 (605)
T PF03170_consen 324 QPISFNFRLPPDLFAWDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIGS-----LPLTP-------ADGAGFDRYTVS 391 (605)
T ss_pred CcceeEeeCCccccccCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEEe-----EECCC-------CCCCccceeEEe
Confidence 4477888886632 22345555555544 3578999999975431 11111 233556789999
Q ss_pred eeCCceeeeecEEEEEEee
Q 006741 594 VPSVLLNRGRNTIYLTQSR 612 (633)
Q Consensus 594 ipa~~L~~G~NtI~lt~~~ 612 (633)
|| ..++.|.|.|.|...-
T Consensus 392 iP-~~~~~~~N~l~~~f~l 409 (605)
T PF03170_consen 392 IP-RLLLPGRNQLQFEFDL 409 (605)
T ss_pred cC-chhcCCCcEEEEEEEe
Confidence 99 9999999999887643
No 61
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=59.13 E-value=17 Score=42.60 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=35.4
Q ss_pred CeEEEEcCCEEEEEECCeEEEEEeCCceeEEEEEE--CCeeccccccCCCCcce
Q 006741 5 GVQLNTKHRRLVVMDNGLVQVTLSNPEGEVIGIKY--NEIDNVLETQNEEDNRG 56 (633)
Q Consensus 5 ~v~l~~~g~~~~vidNg~l~~tv~k~~G~itsi~y--~G~~nll~~~~~~~~~G 56 (633)
+|-.-..+++ ++++||+|.|+|++ +|.||||.- .|. +.|+...+.+.-|
T Consensus 706 p~~~yq~Dd~-~~L~Ng~lrV~i~p-~G~itSl~d~~~gr-E~ld~~~Grn~~G 756 (1078)
T KOG4342|consen 706 PVFVYQTDDS-VTLDNGILRVKIDP-TGRITSLVDVASGR-EALDTAEGRNAVG 756 (1078)
T ss_pred ceeEEecCCe-EEEECCEEEEEECC-CCceeeeeehhccc-chhcccccccccC
Confidence 4446667888 99999999999997 599999964 344 3555555544444
No 62
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=58.59 E-value=57 Score=28.97 Aligned_cols=65 Identities=11% Similarity=0.163 Sum_probs=33.1
Q ss_pred eEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccc--eEeCcccCCceEEEEEECce
Q 006741 332 GGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGY--FSIKNVRQGDYNLYAWIPGI 406 (633)
Q Consensus 332 GtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~--FtI~nVrpGtY~L~a~~~G~ 406 (633)
-+++-+|+-..+ .|..+..|-+......+... .... -+.||++|. +++..-++|+|+++|.+.|-
T Consensus 25 ~tltatV~D~~g------npv~g~~V~f~~~~~~~~l~--~~~~--~~~Td~~G~a~~tltst~aG~~~VtA~~~~~ 91 (100)
T PF02369_consen 25 NTLTATVTDANG------NPVPGQPVTFSSSSSGGTLS--PTNT--SATTDSNGIATVTLTSTKAGTYTVTATVDGG 91 (100)
T ss_dssp EEEEEEEEETTS------EB-TS-EEEE--EESSSEES---CEE---EEE-TTSEEEEEEE-SS-EEEEEEEEETTE
T ss_pred EEEEEEEEcCCC------CCCCCCEEEEEEcCCCcEEe--cCcc--ccEECCCEEEEEEEEecCceEEEEEEEECCc
Confidence 455555543333 77788888762111111111 1100 357899996 55667799999999997643
No 63
>PLN03059 beta-galactosidase; Provisional
Probab=56.50 E-value=11 Score=45.73 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=54.2
Q ss_pred CeeEEEEEEecCCCCCccEEEEEEecccCCCceEEEEcCCCCCC--CCCccccccCCCeeeeeEE--------EeeeEEE
Q 006741 521 PTTWRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADP--PHFATGTIGKDNAIARHGI--------HGLYRLY 590 (633)
Q Consensus 521 ~~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~--p~~~t~~~~~~~~i~R~~~--------~G~~~~~ 590 (633)
++=.+-.|++++.. ... +|-....+.=+|.|||.++.. |.+.+ .-+=+.|-+|+++ .|.....
T Consensus 620 ~twYK~~Fd~p~g~--Dpv----~LDm~gmGKG~aWVNG~nIGRYW~~~a~-~~gC~~c~y~g~~~~~kc~~~cggP~q~ 692 (840)
T PLN03059 620 LTWYKTTFDAPGGN--DPL----ALDMSSMGKGQIWINGQSIGRHWPAYTA-HGSCNGCNYAGTFDDKKCRTNCGEPSQR 692 (840)
T ss_pred ceEEEEEEeCCCCC--CCE----EEecccCCCeeEEECCcccccccccccc-cCCCccccccccccchhhhccCCCceeE
Confidence 34456778875422 112 233345667789999998875 22111 1122447778877 2456677
Q ss_pred EEEeeCCceeeeecEEEEEEeeC
Q 006741 591 SIDVPSVLLNRGRNTIYLTQSRS 613 (633)
Q Consensus 591 ~~~ipa~~L~~G~NtI~lt~~~g 613 (633)
-+.||+++|++|.|+|.|==..|
T Consensus 693 lYHVPr~~Lk~g~N~lViFEe~g 715 (840)
T PLN03059 693 WYHVPRSWLKPSGNLLIVFEEWG 715 (840)
T ss_pred EEeCcHHHhccCCceEEEEEecC
Confidence 78899999999999988765444
No 64
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). This domain is found at the C terminus of glycosyl hydrolases from family 38.; GO: 0015923 mannosidase activity, 0006013 mannose metabolic process; PDB: 2WYI_A 2WYH_A 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=51.27 E-value=1.7e+02 Score=32.22 Aligned_cols=126 Identities=10% Similarity=0.168 Sum_probs=67.8
Q ss_pred EEEECCeEEEEEeCCceeEEEE--EECCeeccccccCCCCcceeEEEEecCCCCCCc---ccccccceEEEEeecCCEEE
Q 006741 16 VVMDNGLVQVTLSNPEGEVIGI--KYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGS---YDKLIATDFKVIMQDENQVE 90 (633)
Q Consensus 16 ~vidNg~l~~tv~k~~G~itsi--~y~G~~nll~~~~~~~~~GY~d~~w~~~g~~~~---~~~~~gt~~~vi~~~~~~i~ 90 (633)
.+|+|+.+.|+|+..+|.|++| +-+|.+ +... ..+ .++.+. +.++... +..-......++.+++-...
T Consensus 89 ~~leN~~~~v~~~~~tG~i~sl~dk~~g~~-~~~~---~~~-~~~~y~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 161 (457)
T PF07748_consen 89 NVLENEFYKVTFDPNTGGIKSLYDKKTGRE-YVDQ---DGN-DFYIYE--DIDGDYDISPLELQRSGAYLFVEDGPLRSS 161 (457)
T ss_dssp TEEETSSEEEEE-TTTSSEEEEEETTTS-E-EEEE---ECE-EEEEEE--BTTSCTTE-SCCCGSEECCEEEEESSSEEE
T ss_pred EEEEccEEEEEEeCCCCeEEEEEEccCCeE-EEee---cCC-ceeEec--cccccccccccccccCceEEEEecCCceEE
Confidence 4689999999999987999999 444543 3211 011 111111 1111110 01112234445566777777
Q ss_pred EEEEEeec-cc------cCCCccccceeEEEEEEcCcceeEEEEEeeccCCCCCCCCcceEEEEEeCC
Q 006741 91 VSFTRTWN-IS------LRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQ 151 (633)
Q Consensus 91 vs~~~~~~-~s------~~g~~~~~~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~ 151 (633)
|.....+. |. .........+.+.+.|.+|++-|..=+...+... +.. -++|+.|..+-
T Consensus 162 i~~~~~~~~p~~~~~~~~~~~~~~~~i~~~i~L~~~~~~ie~~~~vdn~~~--~~~-~~l~~~f~t~i 226 (457)
T PF07748_consen 162 IRVEYKFELPKNLSLVKRSEQTGSSRITQTIRLYKGSPRIEFETEVDNWAE--DHR-KELRVRFPTNI 226 (457)
T ss_dssp EEEEEEEEEESCBECEEEESCEEEEEEEEEEEEETTESSEEEEEEEEE-TT--SCE-EEEEEEEEES-
T ss_pred EEEEEEEeccCCcEEEEEEEeccceEEEEEEEEecCceEEEEEEEeccccc--CCc-eeEEEEeecCC
Confidence 66666551 10 0011133478999999999999988876653221 111 36777777653
No 65
>smart00095 TR_THY Transthyretin.
Probab=50.27 E-value=14 Score=34.59 Aligned_cols=55 Identities=20% Similarity=0.099 Sum_probs=36.8
Q ss_pred ccccCccEEEecCCCCCCcccccCccceeEEEeCCccceE----eCcccCCceEEEEEECceeeeeee
Q 006741 349 LMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFS----IKNVRQGDYNLYAWIPGIVGDYKY 412 (633)
Q Consensus 349 ~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~Ft----I~nVrpGtY~L~a~~~G~~G~~~~ 412 (633)
.+||+++.|-|....+.+.|+. ---..||++|+.. -..+.+|.|+|..- .|+|..
T Consensus 16 G~PAagv~V~L~~~~~~~~w~~-----la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~----tg~Yf~ 74 (121)
T smart00095 16 GSPAVNVAVKVFKKTEEGTWEP-----FASGKTNESGEIHELTTDEKFVEGLYKVEFD----TKSYWK 74 (121)
T ss_pred CccCCCCEEEEEEeCCCCceEE-----EEEEecCCCccccCccCcccccceEEEEEEe----hhHhHh
Confidence 3899999999943221123431 1225689999874 13567999999997 666654
No 66
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=48.11 E-value=9.4 Score=37.31 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=31.2
Q ss_pred cEEEEEEecccCCCceEEEEcCCCCCCCCCccccccCCCeeeeeEE--EeeeEEEEEEeeCCceeeeecEEEEEEeeC
Q 006741 538 HYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGI--HGLYRLYSIDVPSVLLNRGRNTIYLTQSRS 613 (633)
Q Consensus 538 ~~tLriala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~--~G~~~~~~~~ipa~~L~~G~NtI~lt~~~g 613 (633)
.++|.|+ +.+..++.|||+.+..-.+.+ .+..+ +-+|. +++| +.+|++|+|+|-+.+..|
T Consensus 5 ~A~l~is----a~g~Y~l~vNG~~V~~~~l~P---------~~t~y~~~~~Y~--tyDV-t~~L~~G~N~iav~lg~g 66 (172)
T PF08531_consen 5 SARLYIS----ALGRYELYVNGERVGDGPLAP---------GWTDYDKRVYYQ--TYDV-TPYLRPGENVIAVWLGNG 66 (172)
T ss_dssp --EEEEE----EESEEEEEETTEEEEEE-----------------BTTEEEEE--EEE--TTT--TTEEEEEEEEEE-
T ss_pred EEEEEEE----eCeeEEEEECCEEeeCCcccc---------ccccCCCceEEE--EEeC-hHHhCCCCCEEEEEEeCC
Confidence 3455553 567999999997653211111 01111 13344 4444 478999999999998654
No 67
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=47.88 E-value=22 Score=44.32 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=46.9
Q ss_pred eEEEEEEecCCCCCccEEEEEEecccCCCceEEEEcCCCCCCCCCccccccCCCeeeeeEEEeeeEEEEEEeeCCceeee
Q 006741 523 TWRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRG 602 (633)
Q Consensus 523 ~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G 602 (633)
..+=.|.+++........|++.. ......|.|||..+.. -.|-+..++|+|.. .|+.|
T Consensus 112 ~Yrr~F~lp~~~~gkrv~L~FeG---V~s~a~VwvNG~~VG~------------------~~g~~~pfefDIT~-~l~~G 169 (1021)
T PRK10340 112 AYQRTFTLSDGWQGKQTIIKFDG---VETYFEVYVNGQYVGF------------------SKGSRLTAEFDISA-MVKTG 169 (1021)
T ss_pred EEEEEEEeCcccccCcEEEEECc---cceEEEEEECCEEecc------------------ccCCCccEEEEcch-hhCCC
Confidence 34556888765443334455543 3567899999985531 12556778999986 67899
Q ss_pred ecEEEEEEee
Q 006741 603 RNTIYLTQSR 612 (633)
Q Consensus 603 ~NtI~lt~~~ 612 (633)
+|+|.+.+.+
T Consensus 170 ~N~LaV~V~~ 179 (1021)
T PRK10340 170 DNLLCVRVMQ 179 (1021)
T ss_pred ccEEEEEEEe
Confidence 9999999854
No 68
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=47.62 E-value=47 Score=33.35 Aligned_cols=62 Identities=11% Similarity=0.001 Sum_probs=41.5
Q ss_pred eEEEEEEEEccccccccccccCccEEEecCCCCCCccccc---C--------cccee-EEEeCCccceEeCcccCCceE
Q 006741 332 GGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERD---S--------KGYQF-WTKANKRGYFSIKNVRQGDYN 398 (633)
Q Consensus 332 GtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~---~--------k~yqy-wt~td~~G~FtI~nVrpGtY~ 398 (633)
=.+.|+|+-.+ ...|..+|.|=|......|..... . ..+-. +..||++|.|++.-|.||-|.
T Consensus 27 l~l~g~V~D~~-----~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~ 100 (188)
T cd03457 27 LTLDLQVVDVA-----TCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYP 100 (188)
T ss_pred EEEEEEEEeCC-----CCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCC
Confidence 47889986432 237888999999665544433211 1 11111 356899999999999999885
No 69
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=46.53 E-value=70 Score=30.00 Aligned_cols=67 Identities=24% Similarity=0.217 Sum_probs=44.4
Q ss_pred eEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEe-----CcccCCceEEEEEECce
Q 006741 332 GGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSI-----KNVRQGDYNLYAWIPGI 406 (633)
Q Consensus 332 GtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI-----~nVrpGtY~L~a~~~G~ 406 (633)
|.++=.|+-. ...+||.++.|.|..-..+ .|+ ----+.||+||+-.- ..+++|.|.|..-
T Consensus 9 G~LTTHVLDt-----a~GkPAagv~V~L~rl~~~-~~~-----~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~---- 73 (124)
T COG2351 9 GRLTTHVLDT-----ASGKPAAGVKVELYRLEGN-QWE-----LLKTVVTNADGRIDAPLLAGETLATGIYELVFH---- 73 (124)
T ss_pred ceeeeeeeec-----ccCCcCCCCEEEEEEecCC-cce-----eeeEEEecCCCcccccccCccccccceEEEEEE----
Confidence 4555555432 1348999999999544332 233 123467899998773 4678999999987
Q ss_pred eeeeeee
Q 006741 407 VGDYKYS 413 (633)
Q Consensus 407 ~G~~~~~ 413 (633)
.|||...
T Consensus 74 ~gdYf~~ 80 (124)
T COG2351 74 TGDYFKS 80 (124)
T ss_pred cchhhhc
Confidence 7777643
No 70
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=43.00 E-value=49 Score=26.18 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=20.6
Q ss_pred eeEEEeCCccceEe--CcccCCceEEEEEE
Q 006741 376 QFWTKANKRGYFSI--KNVRQGDYNLYAWI 403 (633)
Q Consensus 376 qywt~td~~G~FtI--~nVrpGtY~L~a~~ 403 (633)
.|.+.+|++|.+++ +....|+|++++.+
T Consensus 3 ~~~~t~~~~G~Ws~t~~~~~dG~y~itv~a 32 (54)
T PF13754_consen 3 TYTTTVDSDGNWSFTVPALADGTYTITVTA 32 (54)
T ss_pred EEEEEECCCCcEEEeCCCCCCccEEEEEEE
Confidence 46677888897766 55556888888875
No 71
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=42.67 E-value=29 Score=31.63 Aligned_cols=44 Identities=23% Similarity=0.153 Sum_probs=29.9
Q ss_pred CccceEeCcccCCceEEEEEECceeeeeeeeeeEEEecCceeee
Q 006741 383 KRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINL 426 (633)
Q Consensus 383 ~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l 426 (633)
..|.|..-.|+||.|++.+......+.-....+|+|.+|++-=+
T Consensus 56 ~~g~y~~~~v~pG~h~i~~~~~~~~~~~~~~l~~~~~~G~~yy~ 99 (117)
T PF11008_consen 56 KNGGYFYVEVPPGKHTISAKSEFSSSPGANSLDVTVEAGKTYYV 99 (117)
T ss_pred CCCeEEEEEECCCcEEEEEecCccCCCCccEEEEEEcCCCEEEE
Confidence 56777777899999999995321111112566799999998544
No 72
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=40.76 E-value=1.8e+02 Score=29.97 Aligned_cols=32 Identities=9% Similarity=0.280 Sum_probs=27.8
Q ss_pred EEEECC-eEEEEEeCCceeEEEEEECC--eecccc
Q 006741 16 VVMDNG-LVQVTLSNPEGEVIGIKYNE--IDNVLE 47 (633)
Q Consensus 16 ~vidNg-~l~~tv~k~~G~itsi~y~G--~~nll~ 47 (633)
|+|.|+ .+++.|..-+|.|+|++.+| .|.|..
T Consensus 3 itL~n~~~~~~~i~~~Ga~l~s~~~~~~~~~~l~~ 37 (300)
T PF01263_consen 3 ITLENGNGLSAVIPEYGAELTSLQVKGNGREVLWQ 37 (300)
T ss_dssp EEEEETTSEEEEEETBTTEEEEEEETTTTEESB-B
T ss_pred EEEECCCceEEEEeccCcEEEEEEECCCCeEEecC
Confidence 899998 89999999999999999999 665544
No 73
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=38.90 E-value=1.4e+02 Score=34.08 Aligned_cols=68 Identities=13% Similarity=0.274 Sum_probs=45.2
Q ss_pred cCccceeEEEeC--CccceEeCcccCCceEEEEEECceeeeeeeeeeEEEecCc--eeeecceEecCCCCCCceeEEecc
Q 006741 371 DSKGYQFWTKAN--KRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGS--NINLGVLVYEPPRKGPTLWEIGIP 446 (633)
Q Consensus 371 ~~k~yqywt~td--~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~--t~~l~~l~~~~p~~g~~LweIGi~ 446 (633)
-+-.++|+...+ +.=.|.|+ |..|+|.+++...|++ . |.=..|. ---+|.|.+.. +....|.||..
T Consensus 74 ~~i~a~w~snn~~~A~p~f~~P-vp~G~~sV~isceG~q---~----v~~~gg~~dg~~~GlIAY~~--~~~~~WnvG~y 143 (465)
T PF01690_consen 74 VNIDAGWYSNNSVKAIPMFVFP-VPKGKWSVEISCEGYQ---A----VSSIGGPNDGKWDGLIAYDN--SSSDGWNVGNY 143 (465)
T ss_pred EEecceeEecCcceeeeEEEEe-cCCceEEEEEEeccee---c----ccccCCCCCCceeeeEEecC--ccccccccccc
Confidence 366677776655 44578887 9999999999987765 1 2212121 11357677873 44499999987
Q ss_pred CC
Q 006741 447 DR 448 (633)
Q Consensus 447 Dr 448 (633)
.+
T Consensus 144 ~g 145 (465)
T PF01690_consen 144 NG 145 (465)
T ss_pred cC
Confidence 64
No 74
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=34.70 E-value=87 Score=29.62 Aligned_cols=95 Identities=17% Similarity=0.300 Sum_probs=48.2
Q ss_pred EEEEEecCCCCCccEEEEEEecccCCCceEEEEcCCCCC--CCCCccccccCCCeeeeeEEEeeeEEEE-EEeeCC-cee
Q 006741 525 RIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNAD--PPHFATGTIGKDNAIARHGIHGLYRLYS-IDVPSV-LLN 600 (633)
Q Consensus 525 ~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~--~p~~~t~~~~~~~~i~R~~~~G~~~~~~-~~ipa~-~L~ 600 (633)
+|++..+ ......|.+||-.|+.+.+.+.|.+++.... .+.-.| ..+... ..++|..|. ++++.. .+.
T Consensus 41 ~~~v~~~-~~~~~~YrIRiRYAs~~~~~~~i~~~~~~~~~~~~~~~T--~~~~~~-----~~~~y~~F~y~~~~~~~~~~ 112 (143)
T PF03944_consen 41 KIRVTIN-NSSSQKYRIRIRYASNSNGTLSISINNSSGNLSFNFPST--MSNGDN-----LTLNYESFQYVEFPTPFTFS 112 (143)
T ss_dssp EEEEEES-SSSTEEEEEEEEEEESS-EEEEEEETTEEEECEEEE--S--SSTTGG-----CCETGGG-EEEEESSEEEES
T ss_pred EEEEEec-CCCCceEEEEEEEEECCCcEEEEEECCccceeeeecccc--ccCCCc-----cccccceeEeeecCceEEec
Confidence 4444433 2334679999999998889999998886442 111111 111111 233333232 122221 122
Q ss_pred eee-cEEEEEEeeCCCCCceEEEEEEEEe
Q 006741 601 RGR-NTIYLTQSRSRSPFQGVLYDYIRLE 628 (633)
Q Consensus 601 ~G~-NtI~lt~~~g~s~~~~vmyD~IrLe 628 (633)
.+. .+|.|.+...++. ..|.-|-|++.
T Consensus 113 ~~~~~~~~i~i~~~~~~-~~v~IDkIEFI 140 (143)
T PF03944_consen 113 SNQSITITISIQNISSN-GNVYIDKIEFI 140 (143)
T ss_dssp TSEEEEEEEEEESSTTT-S-EEEEEEEEE
T ss_pred CCCceEEEEEEEecCCC-CeEEEEeEEEE
Confidence 222 5677765543322 68999999885
No 75
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=33.68 E-value=47 Score=31.45 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=22.2
Q ss_pred cccCCceEEEEEECceeeeeeeeeeEEEec
Q 006741 391 NVRQGDYNLYAWIPGIVGDYKYSANITVRA 420 (633)
Q Consensus 391 nVrpGtY~L~a~~~G~~G~~~~~~~VtV~a 420 (633)
.++||+|+|.+-+..-.+....+.+++|++
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F~It~ 131 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDFTITA 131 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEEEECH
Confidence 799999999988755444445666788874
No 76
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=31.94 E-value=35 Score=28.10 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=16.8
Q ss_pred EEeeCCce-eeeecEEEEEE
Q 006741 592 IDVPSVLL-NRGRNTIYLTQ 610 (633)
Q Consensus 592 ~~ipa~~L-~~G~NtI~lt~ 610 (633)
+.|.+++| ++|+|+|+|.-
T Consensus 36 l~i~~~~f~~~G~~~I~I~A 55 (65)
T PF07550_consen 36 LKIKASAFNKDGENTIVIKA 55 (65)
T ss_pred EEEcHHHcCcCCceEEEEEe
Confidence 78889999 78999999983
No 77
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=30.17 E-value=62 Score=40.53 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=45.9
Q ss_pred eEEEEEEecCCCCCc-cEEEEEEecccCCCceEEEEcCCCCCCCCCccccccCCCeeeeeEEE-eeeEEEEEEeeCCcee
Q 006741 523 TWRIIFELKHLNNNG-HYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIH-GLYRLYSIDVPSVLLN 600 (633)
Q Consensus 523 ~w~I~F~L~~~~~~~-~~tLriala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~-G~~~~~~~~ipa~~L~ 600 (633)
..+=.|.+++..... ...|++. +......|.|||+.+. +| |-+.-++|+|. ..|+
T Consensus 123 wYrr~F~vp~~w~~~~rv~L~Fe---GV~~~a~VwvNG~~VG-------------------~~~g~~~pfefDIT-~~l~ 179 (1027)
T PRK09525 123 CYSLTFTVDESWLQSGQTRIIFD---GVNSAFHLWCNGRWVG-------------------YSQDSRLPAEFDLS-PFLR 179 (1027)
T ss_pred EEEEEEEeChhhcCCCeEEEEEC---eeccEEEEEECCEEEE-------------------eecCCCceEEEECh-hhhc
Confidence 345568887653322 3445544 3567889999997442 23 56777899996 6778
Q ss_pred eeecEEEEEEee
Q 006741 601 RGRNTIYLTQSR 612 (633)
Q Consensus 601 ~G~NtI~lt~~~ 612 (633)
.|+|+|.+.+.+
T Consensus 180 ~G~N~L~V~V~~ 191 (1027)
T PRK09525 180 AGENRLAVMVLR 191 (1027)
T ss_pred CCccEEEEEEEe
Confidence 999999999954
No 78
>PRK10150 beta-D-glucuronidase; Provisional
Probab=27.73 E-value=1e+02 Score=36.03 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=42.7
Q ss_pred EEEEEEecCCCCCccEEEEEEecccCCCceEEEEcCCCCCCCCCccccccCCCeeeeeEEEeeeEEEEEEeeCCceeeee
Q 006741 524 WRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGR 603 (633)
Q Consensus 524 w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 603 (633)
.+=.|++++........|++.. ....-+|.|||..+.. -.|-+..++|+|.. .|+.|+
T Consensus 69 Yrr~f~lp~~~~gk~v~L~Feg---v~~~a~V~lNG~~vg~------------------~~~~~~~f~~DIT~-~l~~G~ 126 (604)
T PRK10150 69 YQREVFIPKGWAGQRIVLRFGS---VTHYAKVWVNGQEVME------------------HKGGYTPFEADITP-YVYAGK 126 (604)
T ss_pred EEEEEECCcccCCCEEEEEECc---ccceEEEEECCEEeee------------------EcCCccceEEeCch-hccCCC
Confidence 3445888654432334455542 4456789999975430 12567778999975 677886
Q ss_pred c-EEEEEEe
Q 006741 604 N-TIYLTQS 611 (633)
Q Consensus 604 N-tI~lt~~ 611 (633)
| +|.+.+.
T Consensus 127 ~n~L~V~v~ 135 (604)
T PRK10150 127 SVRITVCVN 135 (604)
T ss_pred ceEEEEEEe
Confidence 4 9999984
No 79
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=26.63 E-value=1.3e+02 Score=35.58 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=48.0
Q ss_pred CCeeEEEEEEecCCCCCccEEEEEEecccCCCceEEEEcCCCCCCCCCccccccCCCeeeeeEEEeeeEEEEEEeeCCce
Q 006741 520 KPTTWRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLL 599 (633)
Q Consensus 520 ~~~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 599 (633)
+|-+|-=.|+.++... . ++|-...-+.=+|.|||.++.. .+++ + |. ..++-||++.|
T Consensus 556 ~P~~w~k~f~~p~g~~--~----t~Ldm~g~GKG~vwVNG~niGR-YW~~--~------------G~--Q~~yhvPr~~L 612 (649)
T KOG0496|consen 556 QPLTWYKTFDIPSGSE--P----TALDMNGWGKGQVWVNGQNIGR-YWPS--F------------GP--QRTYHVPRSWL 612 (649)
T ss_pred CCeEEEEEecCCCCCC--C----eEEecCCCcceEEEECCccccc-ccCC--C------------CC--ceEEECcHHHh
Confidence 5777877788765442 1 1222235677899999998874 2222 1 33 56788999999
Q ss_pred eeeecEEEEEEeeC
Q 006741 600 NRGRNTIYLTQSRS 613 (633)
Q Consensus 600 ~~G~NtI~lt~~~g 613 (633)
|.+.|.|.+---.+
T Consensus 613 k~~~N~lvvfEee~ 626 (649)
T KOG0496|consen 613 KPSGNLLVVFEEEG 626 (649)
T ss_pred CcCCceEEEEEecc
Confidence 99999988765555
No 80
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=25.18 E-value=1e+02 Score=26.95 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=25.2
Q ss_pred ccCccEEEecCCCCCCcccccCccceeEEEeC-CccceEeCcccCC
Q 006741 351 WADSAYVGLAAPGGVGSWERDSKGYQFWTKAN-KRGYFSIKNVRQG 395 (633)
Q Consensus 351 pa~~a~V~La~~g~~g~~q~~~k~yqywt~td-~~G~FtI~nVrpG 395 (633)
.+.++.|.+ |.......|.|.... .+|.|.|.++..|
T Consensus 35 ~~~g~~v~~--------~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~ 72 (105)
T PF14200_consen 35 TANGTNVQQ--------WTCNGNDNQQWKIEPVGDGYYRIRNKNSG 72 (105)
T ss_dssp CSTTEBEEE--------EESSSSGGGEEEEEESTTSEEEEEETSTT
T ss_pred cCCCcEEEE--------ecCCCCcCcEEEEEEecCCeEEEEECCCC
Confidence 345666765 333357788886665 6789999988665
No 81
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=24.04 E-value=2.7e+02 Score=28.67 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=36.3
Q ss_pred ceEEEEEEEEccccccccc-cccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCCceEEEEE
Q 006741 331 RGGVFGQLRVHDRYISNRL-MWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAW 402 (633)
Q Consensus 331 RGtVsG~l~~sd~~~~~~~-~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpGtY~L~a~ 402 (633)
-++++|+|. |.|.+.+- ....++.+-|-+.+ |.. .+-|.+ ....+|.|.-..+=+|+|.|..-
T Consensus 21 ~s~l~G~ii--D~~tgE~i~~~~~gv~i~l~e~g----y~~--~~~~~~-~v~qDGtf~n~~lF~G~Yki~~~ 84 (222)
T PF12866_consen 21 DSTLTGRII--DVYTGEPIQTDIGGVRIQLYELG----YGD--NTPQDV-YVKQDGTFRNTKLFDGDYKIVPK 84 (222)
T ss_dssp -EEEEEEEE--ECCTTEE----STSSEEEEECS-----CCG----SEEE-EB-TTSEEEEEEE-SEEEEEEE-
T ss_pred CceEEEEEE--EeecCCeeeecCCceEEEEEecc----ccc--CCCcce-EEccCCceeeeeEeccceEEEEc
Confidence 489999983 33211111 12246677775554 552 244444 36789999888999999999983
No 82
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=22.74 E-value=4e+02 Score=22.97 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=38.4
Q ss_pred ceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccc--eEeCcccCCceEEEEEECcee
Q 006741 331 RGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGY--FSIKNVRQGDYNLYAWIPGIV 407 (633)
Q Consensus 331 RGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~--FtI~nVrpGtY~L~a~~~G~~ 407 (633)
...|+-+|+-.+| .|..++.|-+.-.+.. .....+ -...+|++|. +.+..-.+|++++++.+.|..
T Consensus 19 ~~~i~v~v~D~~G------npv~~~~V~f~~~~~~-~~~~~~----~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~~ 86 (92)
T smart00634 19 AITLTATVTDANG------NPVAGQEVTFTTPSGG-ALTLSK----GTATTDANGIATVTLTSTTAGVYTVTASLENGS 86 (92)
T ss_pred cEEEEEEEECCCC------CCcCCCEEEEEECCCc-eeeccC----CeeeeCCCCEEEEEEECCCCcEEEEEEEECCCc
Confidence 4667767654444 6666666666543321 111111 1236888996 445566789999999876543
No 83
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=20.60 E-value=1.1e+02 Score=26.70 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=24.4
Q ss_pred cccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeC
Q 006741 350 MWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIK 390 (633)
Q Consensus 350 ~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~ 390 (633)
.|..+|.|.|.=.+..+ .......+.||++|.|.|.
T Consensus 19 ~~l~GA~V~v~C~~~~~-----~~~~~~~~~Td~~G~F~i~ 54 (97)
T PF01190_consen 19 KPLPGAKVSVECKDGNG-----GVVFSAEAKTDENGYFSIE 54 (97)
T ss_pred ccCCCCEEEEECCCCCC-----CcEEEEEEEeCCCCEEEEE
Confidence 67788999885333110 0234566889999999996
Done!