Query 006742
Match_columns 633
No_of_seqs 201 out of 341
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jy1_A TDP1, tyrosyl-DNA phosp 100.0 7E-113 2E-117 938.8 26.9 438 145-623 3-463 (464)
2 1q32_A TDP1P;, tyrosyl-DNA pho 100.0 3E-99 1E-103 839.5 16.5 422 135-613 56-543 (544)
3 3sq7_A Tyrosyl-DNA phosphodies 100.0 5.2E-98 2E-102 816.5 20.5 399 162-612 3-466 (470)
4 2brf_A Bifunctional polynucleo 99.6 7.7E-16 2.6E-20 138.0 8.0 96 4-109 7-106 (110)
5 1ujx_A Polynucleotide kinase 3 99.6 4.5E-15 1.5E-19 134.6 7.9 96 4-109 14-113 (119)
6 1yj5_C 5' polynucleotide kinas 99.5 5.9E-15 2E-19 137.0 7.8 97 4-110 7-107 (143)
7 3kt9_A Aprataxin; FHA domain, 99.4 7E-13 2.4E-17 117.5 7.5 95 5-109 3-100 (102)
8 1lgp_A Cell cycle checkpoint p 97.8 2.2E-05 7.5E-10 70.2 6.0 90 4-101 2-96 (116)
9 1g6g_A Protein kinase RAD53; b 97.1 0.00046 1.6E-08 62.7 5.8 88 5-102 4-108 (127)
10 1gxc_A CHK2, CDS1, serine/thre 97.0 0.00099 3.4E-08 62.2 7.0 96 5-110 29-141 (149)
11 3va4_A Mediator of DNA damage 96.9 0.0012 4.3E-08 60.6 5.9 99 4-109 22-125 (132)
12 2jqj_A DNA damage response pro 96.7 0.0012 4E-08 61.8 4.3 96 4-109 16-123 (151)
13 1dmz_A Protein (protein kinase 96.3 0.0082 2.8E-07 56.6 7.4 95 7-109 6-122 (158)
14 1wln_A Afadin; beta sandwich, 96.2 0.011 3.8E-07 53.0 7.8 98 4-109 9-113 (120)
15 2jpe_A Nuclear inhibitor of pr 96.2 0.0073 2.5E-07 55.6 6.7 79 23-105 47-132 (140)
16 3fm8_A Kinesin-like protein KI 96.2 0.0098 3.4E-07 54.1 7.3 94 6-108 26-122 (124)
17 1uht_A Expressed protein; FHA 96.0 0.0056 1.9E-07 54.6 4.8 88 6-102 12-105 (118)
18 2xt9_B Putative signal transdu 96.0 0.0066 2.3E-07 54.0 5.0 78 22-109 23-104 (115)
19 3po8_A RV0020C protein, putati 95.8 0.0091 3.1E-07 51.6 4.9 77 21-105 14-94 (100)
20 2csw_A Ubiquitin ligase protei 95.8 0.014 4.9E-07 54.0 6.5 74 23-100 28-110 (145)
21 2pie_A E3 ubiquitin-protein li 95.7 0.018 6.1E-07 52.9 7.0 84 23-110 20-117 (138)
22 1r21_A Antigen KI-67; beta san 95.7 0.0094 3.2E-07 53.9 5.0 93 5-109 11-107 (128)
23 2kb3_A Oxoglutarate dehydrogen 95.6 0.011 3.8E-07 54.9 4.9 78 22-109 58-139 (143)
24 3oun_A Putative uncharacterize 95.6 0.01 3.6E-07 56.1 4.7 72 20-99 75-150 (157)
25 1qu5_A Protein kinase SPK1; FH 95.5 0.021 7E-07 55.3 6.7 83 23-109 42-146 (182)
26 3gqs_A Adenylate cyclase-like 95.4 0.012 4.2E-07 51.4 4.4 80 22-109 16-101 (106)
27 4ejq_A Kinesin-like protein KI 95.3 0.022 7.5E-07 53.5 6.1 96 6-109 38-143 (154)
28 1g3g_A Protien kinase SPK1; FH 95.2 0.01 3.4E-07 56.3 3.4 88 6-101 33-135 (164)
29 1mzk_A Kinase associated prote 95.0 0.019 6.6E-07 52.8 4.5 80 24-109 21-118 (139)
30 3hx1_A SLR1951 protein; P74513 95.0 0.028 9.7E-07 51.3 5.6 76 23-105 23-111 (131)
31 2kfu_A RV1827 PThr 22; FHA dom 95.0 0.025 8.4E-07 53.8 5.4 77 23-109 68-148 (162)
32 2ff4_A Probable regulatory pro 93.9 0.05 1.7E-06 57.9 5.4 78 23-109 299-380 (388)
33 3els_A PRE-mRNA leakage protei 93.6 0.039 1.3E-06 52.1 3.5 90 9-102 34-146 (158)
34 3i6u_A CDS1, serine/threonine- 92.7 0.098 3.4E-06 55.6 5.3 87 5-101 9-111 (419)
35 4h87_A Kanadaptin; FHA domain 92.4 0.17 5.9E-06 46.1 5.7 82 22-109 32-128 (130)
36 3elv_A PRE-mRNA leakage protei 90.8 0.26 8.8E-06 48.5 5.4 91 9-103 81-194 (205)
37 4egx_A Kinesin-like protein KI 89.8 0.61 2.1E-05 45.0 7.1 97 5-109 67-173 (184)
38 1byr_A Protein (endonuclease); 84.6 0.77 2.6E-05 41.4 4.2 39 479-532 91-129 (155)
39 4ggj_A Mitochondrial cardiolip 81.1 1.5 5.1E-05 42.1 4.9 39 478-531 120-158 (196)
40 3hsi_A Phosphatidylserine synt 78.8 1.3 4.3E-05 48.5 3.9 40 477-531 359-398 (458)
41 4a0e_A YSCD, type III secretio 77.9 1.3 4.3E-05 40.3 3.0 49 24-74 18-70 (123)
42 1byr_A Protein (endonuclease); 72.5 3.1 0.00011 37.4 4.2 40 248-290 89-129 (155)
43 1v0w_A Phospholipase D; hydrol 63.0 4.1 0.00014 44.6 3.4 31 248-281 162-192 (506)
44 4gel_A Mitochondrial cardiolip 54.2 7.3 0.00025 37.3 3.1 26 495-531 165-190 (220)
45 3uv0_A Mutator 2, isoform B; F 48.9 16 0.00056 31.9 4.1 66 23-97 13-83 (102)
46 4ggj_A Mitochondrial cardiolip 47.0 13 0.00045 35.4 3.6 41 247-290 118-159 (196)
47 3huf_A DNA repair and telomere 43.9 7.4 0.00025 40.7 1.4 33 24-56 15-53 (325)
48 1v0w_A Phospholipase D; hydrol 38.3 27 0.00092 38.0 4.9 37 249-290 436-472 (506)
49 1xdp_A Polyphosphate kinase; P 29.0 46 0.0016 38.2 4.9 41 480-531 432-475 (687)
50 3hsi_A Phosphatidylserine synt 22.8 38 0.0013 36.8 2.6 56 248-316 359-415 (458)
51 1xdp_A Polyphosphate kinase; P 22.5 54 0.0019 37.6 3.9 43 478-532 587-629 (687)
52 3kmh_A D-lyxose isomerase; cup 20.5 65 0.0022 32.3 3.5 44 60-103 140-189 (246)
No 1
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=100.00 E-value=7.2e-113 Score=938.77 Aligned_cols=438 Identities=41% Similarity=0.753 Sum_probs=367.7
Q ss_pred CcccccccccCCCCCCCCceEEEEecCCCCCCCCCeeEecC------CchhhhhhhhcccCHHhhhccCCC-CCCCCeEE
Q 006742 145 NSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRD------GDIIVAILSNYMVDIDWLLPACPV-LAKIPHVL 217 (633)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~F~Lt~i~g~~~~~N~~~Itl~D------gdl~~ailfnF~~Dl~WLl~~~p~-~~~~~~v~ 217 (633)
+.+|.+++|+......|.+|+||+|+|++.++|.++|+|+| |+|+.|++||||+|++|||++|+. .+++| |+
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~~l~~i~~~~~~~n~~~itl~diL~~~~g~l~~a~~~nf~~D~~WLl~~~~~~~~~~~-v~ 81 (464)
T 1jy1_A 3 DPGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKP-IL 81 (464)
T ss_dssp CTTTTCCGGGTSCTTCSSCEEEBCCTTSCGGGGTTCBCHHHHTSGGGCCEEEEEEECSCBCHHHHHHHSCGGGTTSC-EE
T ss_pred CcccccchhhhhcccCCceEEEEeecCCCcccCCCceeHHHHhCCccccHHHHHhHHhHHhHHHHHhhCcccccCCc-EE
Confidence 45677899999988888999999999999999999999999 489999999999999999999974 46665 78
Q ss_pred EEeCCCCchhhhh--hhcCCCceEEecCCCCCCCCCccceeEEEEeCCccEEEEeCCCCCccccccccceEEeec-ccCC
Q 006742 218 VIHGESDGTLEHM--KRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FPLK 294 (633)
Q Consensus 218 Vv~ge~~~~~~~~--~~~~~~n~~l~~p~mp~~fGtHHSKmmLL~y~dglRVVI~TANLi~~DW~~~tQ~vW~qD-fP~~ 294 (633)
||||++++....+ .....+|+++|+|+||++|||||||||||+|+||||||||||||+++||+++||+||+|| ||++
T Consensus 82 iv~g~~~~~~~~l~~~~~~~~nv~~~~p~mp~~fGthHsKmmiL~y~~glRVVI~TANL~~~DW~~~tQ~vW~sd~lP~~ 161 (464)
T 1jy1_A 82 LVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRI 161 (464)
T ss_dssp EEECCCHHHHHHHHHHHTTCTTEEEEECCCCSTTCCBCCCEEEEEESSCEEEEEECCCBSGGGGTSSBCEEEECCCBCBC
T ss_pred EEeCCCcccchhhHHhhccCCCeEEEeCCCCCcccccchhhheeecCCceEEEEeCCCCChhHhccccceEEecccCcCC
Confidence 8899865432222 224567999999999999999999999999999999999999999999999999999999 7987
Q ss_pred CCCC---CCCCCCcHHHHHHHHHhCCCCccccCCCCCCCccccccccccccccccceEEEEccCCCCCCCccccccHHHH
Q 006742 295 DQNN---LSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKL 371 (633)
Q Consensus 295 ~~~s---~~~~t~Fk~DL~~YL~ay~~~~~~~~~p~l~~~~i~~~~L~~yDFS~a~v~LVaSVPG~h~g~~~~~~G~~~L 371 (633)
...+ .+++++|++||++||++|+.+.... ++++|++||||.++|+||+||||+|.|.+..+|||++|
T Consensus 162 ~~~~~~~~~~~~~Fk~dL~~yL~ay~~~~~~~----------~i~~L~~~DFS~~~v~LVaSvPG~h~~~~~~~~G~~~L 231 (464)
T 1jy1_A 162 ADGTHKSGESPTHFKANLISYLTAYNAPSLKE----------WIDVIHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRL 231 (464)
T ss_dssp CTTCCCCCCCTTCHHHHHHHHHHTTCCGGGHH----------HHHHHHTBCCTTCCSEEEEECSEEEEGGGGGGSHHHHH
T ss_pred CccccccCCCCCchHHHHHHHHHHhCCchhHH----------HHHHHHhcCCcccCcEEEEeCCcCCcCCcchhhhHHHH
Confidence 5433 3688999999999999998764321 25889999999999999999999999999999999999
Q ss_pred HHHHhhccccC-CCcccCeEEEecCCCcCC---hHHH-HHHHhcccCCCCCCCCC-CCCCCceEEccCchhhhcCccccc
Q 006742 372 RTVLQECTFEK-GFKKSPLVYQFSSLGSLD---EKWM-AELSSSMSSGFSEDKTP-LGIGEPLIVWPTVEDVRCSLEGYA 445 (633)
Q Consensus 372 ~~~L~~~~~~~-~~~~~~i~~Q~SSIGsl~---~~wL-~~f~~sl~~g~~~~~~~-~~~~~~~IIfPT~e~Vr~S~~G~~ 445 (633)
+++|+++.... ..+.++|+||+||||+|+ .+|| ++|+.+|++...+.+.+ ...++++|||||+||||+|.+||.
T Consensus 232 ~~~L~~~~~~~~~~~~~~i~~Q~SSIGslg~~~~~Wl~~~f~~sl~~~~~~~~~~~~~~~~~~iifPT~e~Vr~S~~G~~ 311 (464)
T 1jy1_A 232 KKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYP 311 (464)
T ss_dssp HHHHHHHC-----CCSCCEEEECSCBCCCCSSTTTTTTTTHHHHHTCCC---------CCCEEEECCBHHHHHTSSSCGG
T ss_pred HHHHHHhccCCCccCCCcEEEEeecccccCcchhHHHHHHHHHHhhhhcccccccccCCCceEEEcCCHHHHHhcccccC
Confidence 99999987642 225789999999999997 5899 68999997753221111 134679999999999999999999
Q ss_pred CCCcccCCCccch-hHhHHHHHhhhcCCCCCCCCCCCcceeEEeecC--CceeEEEEeccccchhhhhccccCCceeeee
Q 006742 446 AGNAIPSPQKNVD-KDFLKKYWAKWKASHTGRSRAMPHIKTFARYNG--QKLAWFLLTSANLSKAAWGALQKNNSQLMIR 522 (633)
Q Consensus 446 ~GGsi~~~~~~~~-~~~l~~~~~kw~~~~s~R~~a~PHiKty~R~~~--~~i~W~lltSaNLSkaAWG~l~k~~~ql~Ir 522 (633)
+|||||++.++++ +.|++++||+|+++.++|++||||||||+|++. ..++|+||||||||+||||+++++++||+||
T Consensus 312 ~ggsi~~~~~~~~~~~~l~~~l~~w~~~~~~R~~a~pHiKty~r~~~~~~~~~W~lltSaNLSkaAWG~~~k~~~~l~I~ 391 (464)
T 1jy1_A 312 AGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIR 391 (464)
T ss_dssp GGGGSCCCHHHHTTCGGGGGGEECCCCGGGTCTTSCBCCEEEEEECTTSSEEEEEEEESCCBSHHHHCEEETTTTEEEEC
T ss_pred CcceeeccchhhhhhhhhHHHHHHhccCccCCCCcCCceeeEEecCCCCCeecEEEEccccCCHHHhCccccCCCceeEe
Confidence 9999999866554 469999999999999999999999999999985 4799999999999999999999999999999
Q ss_pred eeeeeeEEcCCcccCCCccccccCCCCcccccCCccchhhccceeeeeecCCCCCCCCCCcceeeccccCCCCCCCCCCC
Q 006742 523 SYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSED 602 (633)
Q Consensus 523 NyElGVL~~P~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~vPy~LP~~~Y~~~D 602 (633)
||||||||+|.++... .|++.. +.++ . .....+.|||||++|++||+++|
T Consensus 392 nyElGVl~~P~~~~~~-~~~~~~--------------------~~~~----~-----~~~~~~~~~vPy~lP~~~Y~~~D 441 (464)
T 1jy1_A 392 SYELGVLFLPSALGLD-SFKVKQ--------------------KFFA----G-----SQEPMATFPVPYDLPPELYGSKD 441 (464)
T ss_dssp SBEEEEEECGGGGTCS-CEEEC----------------------------------------CEECCSSCSSCCBCCTTC
T ss_pred eeeeeEEEeccccccc-ccccCc--------------------cccc----c-----ccCcccceeecCCCCCcCCCCCC
Confidence 9999999999876432 222110 0000 0 01224689999999999999999
Q ss_pred CCceecCCCCCc-ccCCCCccc
Q 006742 603 VPWSWDKRYTKK-DVYGQVWPR 623 (633)
Q Consensus 603 ~PW~~~~~y~~p-D~~G~~w~~ 623 (633)
+||+++++|.+| |++|++|++
T Consensus 442 ~Pw~~~~~~~~~~D~~G~~w~p 463 (464)
T 1jy1_A 442 RPWIWNIPYVKAPDTHGNMWVP 463 (464)
T ss_dssp CBCCTTSCBCSSCCTTSCCBCC
T ss_pred CCeeCCCCCCCcccCCcCcCCC
Confidence 999999999997 999999986
No 2
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=100.00 E-value=3e-99 Score=839.48 Aligned_cols=422 Identities=18% Similarity=0.253 Sum_probs=306.7
Q ss_pred cccccCCCCCCcccccccccCCCCCCCCceEEEEecCCCCC----CCCCeeEecC----CchhhhhhhhcccCHHhhhcc
Q 006742 135 QDEQDNENGKNSEEALCNFHVSRDKLPSTFRLLRVQGLPAW----ANTSCVSIRD----GDIIVAILSNYMVDIDWLLPA 206 (633)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Lt~i~g~~~~----~N~~~Itl~D----gdl~~ailfnF~~Dl~WLl~~ 206 (633)
++++.+.+++...+..++.. ..+++||||+++++++.+ +|.++|+|+| ++|+.|++||||+|++|||++
T Consensus 56 ~vi~l~~~~~~~~~~~~~~~---~~~~spf~L~~~~~~~~~~~~~~n~~~isl~dlL~~~~l~~a~~~nF~~Di~WLl~~ 132 (544)
T 1q32_A 56 KIIDLTNQEQDLSERIETND---TAKGAVFKLMKSDFYEREDFMGEVEDMITLKDIFGTETLKRSILFSFQYELDFLLRQ 132 (544)
T ss_dssp --------------------------CCEEEEECCTTTTCCC-------EECHHHHHCCTTEEEEEEECSCEEHHHHHTT
T ss_pred ceEECCCccccccccCcccc---cCCCCCeEEEEecccCcccccCCCCCceeHHHHcCCchHHHHHHHHHHHhHHHHHhh
Confidence 45556555444433222211 147789999999999886 5899999999 578999999999999999999
Q ss_pred CCCCCCCCeEEEEeCCCCc----hhhhh--hhcCCCceEEecCCCCCCCCCccceeEEEEeCCc-cEEEEeCCCCCcccc
Q 006742 207 CPVLAKIPHVLVIHGESDG----TLEHM--KRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDW 279 (633)
Q Consensus 207 ~p~~~~~~~v~Vv~ge~~~----~~~~~--~~~~~~n~~l~~p~mp~~fGtHHSKmmLL~y~dg-lRVVI~TANLi~~DW 279 (633)
|+.. +..|+||||+.+. +.+.. .+...+||++|+|+||. |||||||||||+|+|| ||||||||||+++||
T Consensus 133 ~~~~--~~~v~iv~g~~~~~~~~r~~~~~~~~~~~~nv~l~~p~mp~-fGthHSKmmlL~y~dg~lRVVI~TANLi~~DW 209 (544)
T 1q32_A 133 FHQN--VENITIVGQKGTIMPIEARAMDATLAVILKKVKLIEITMPP-FASHHTKLIINFYDNGECKIFLPSNNFTSMET 209 (544)
T ss_dssp SCTT--CCEEEEEEETTCEECCCGGGCCHHHHHHHTTEEEEEECCCT-TCCBCCCEEEEEESTTEEEEEEESSCBSHHHH
T ss_pred Cccc--CCcEEEEecCCcCCchhhhhhhHHhhccCCCeEEEeCCCCC-CCCCCceeEEEEecCCCEEEEEeCCCCChHHh
Confidence 9853 3368889887542 11111 11124699999999998 9999999999999998 999999999999999
Q ss_pred ccccceEEeecccCCCCCCCCCCCCcHHHHHHHHHhCCCCccccCCCCCCCcccccccccccccccc-ceEEEEccCCCC
Q 006742 280 NNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AVRLIASVPGYH 358 (633)
Q Consensus 280 ~~~tQ~vW~qDfP~~~~~s~~~~t~Fk~DL~~YL~ay~~~~~~~~~p~l~~~~i~~~~L~~yDFS~a-~v~LVaSVPG~h 358 (633)
+++||+||+|||+.+. +.+.+++|+.||++||++|+.+.+..+ | ++.|++||||.+ +|+||+||||+|
T Consensus 210 ~~~tQ~vW~sp~lp~~--s~g~~~~Fk~dL~~yL~ay~~~~l~~~--------i-i~~l~~~DFS~~~~v~lV~SvPG~h 278 (544)
T 1q32_A 210 NLPQQVCWCSPLLKIG--KEGLPVPFKRSLIEYLNSYHLKDIDEL--------I-TKSVEEVNFAPLSELEFVYSTPSKF 278 (544)
T ss_dssp HSSBCEEEECCCEEEC--CCSSCCHHHHHHHHHHHTTCCHHHHHH--------T-HHHHHTEECGGGTTCEEEEECCCTT
T ss_pred ccccceEEECCccccc--CCCCCCchHHHHHHHHHHcCCcccchH--------H-HHHHHhcCcccCCceEEEEecCCcc
Confidence 9999999999953322 234679999999999999998643221 1 478999999999 999999999999
Q ss_pred CCCccccccHHHHHHHHhhcc--ccCCCcccCeEEEecCCCc-CC-hHHHHHHHhcccC---C-----CCC-CCCCC---
Q 006742 359 TGSSLKKWGHMKLRTVLQECT--FEKGFKKSPLVYQFSSLGS-LD-EKWMAELSSSMSS---G-----FSE-DKTPL--- 422 (633)
Q Consensus 359 ~g~~~~~~G~~~L~~~L~~~~--~~~~~~~~~i~~Q~SSIGs-l~-~~wL~~f~~sl~~---g-----~~~-~~~~~--- 422 (633)
.| |||++|+++|+++. +....+.++|+||+||||+ ++ ++||++|..+|+. | ... ...+.
T Consensus 279 ~~-----~G~~~L~~~L~~~~~~~~~~~~~~~iv~Q~SSIGs~l~~~~Wl~~f~~~l~~~~~g~~~~~~~~~~~~~k~~~ 353 (544)
T 1q32_A 279 QS-----SGLLSFYNKLEKLSAGTSASDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEI 353 (544)
T ss_dssp SC-----CHHHHHHHHHHHTC------CCEEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC-----------C
T ss_pred CC-----ccHHHHHHHHHHhhccCCCCCCCCcEEEEecccccccCcchhHHHHHHHHhhhhccccccCcccccccccccc
Confidence 98 69999999999987 4433346899999999999 76 5898777655432 1 111 00000
Q ss_pred ------------CCCCceEEccCchhhhcCcccccCCCcccCCCc---cchhHhHHHHHhhhcC----CCCCCCCCCCcc
Q 006742 423 ------------GIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQK---NVDKDFLKKYWAKWKA----SHTGRSRAMPHI 483 (633)
Q Consensus 423 ------------~~~~~~IIfPT~e~Vr~S~~G~~~GGsi~~~~~---~~~~~~l~~~~~kw~~----~~s~R~~a~PHi 483 (633)
...+++|||||++|||+|.+||.+|||||++.+ +.+++|+++++|+|++ +.++|++|||||
T Consensus 354 ~~~~~l~~~~~~~~~~~~IIfPT~e~Vr~S~~G~~~Ggsi~~~~~~~~~~~~~~l~~~~~~w~~~~~~~~s~R~~a~PHi 433 (544)
T 1q32_A 354 LPTNSLINEYSQRKIKPYIIFPTEQEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVTRRRGTTPAHS 433 (544)
T ss_dssp CCHHHHHHHHHHHTEEEEEECCBSGGGTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTSCTTTTTCCBCC
T ss_pred cccchhcccccccCCCceEEcCCHHHHhhcccccCccceEEeccchhhhhhhHHHhhhhhhccCCCccccCCCCCccCce
Confidence 135789999999999999999999999998643 2345799999999997 578999999999
Q ss_pred eeEEeec------------CCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcCCccc-CCC--ccccccCCC
Q 006742 484 KTFARYN------------GQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKR-HGC--GFSCTSNIV 548 (633)
Q Consensus 484 Kty~R~~------------~~~i~W~lltSaNLSkaAWG~l~k~~~ql~IrNyElGVL~~P~~~~-~~~--~f~~~~~~~ 548 (633)
|||+|++ .+.++||||||||||+||||++++ +|+|||||||| |..+. +.. .++|..
T Consensus 434 Kty~r~~~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k-----~irnyElGVL~-P~~~~~~~~~~~~p~~~--- 504 (544)
T 1q32_A 434 KFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSR-----KPRNYEAGVLY-HSRRLANTRKVTCRTFT--- 504 (544)
T ss_dssp EEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSS-----CCSSBEEEEEE-EGGGC---CCEEEEEGG---
T ss_pred EEEEeeccccccccccCCCccceeEEEEccccCCHHHhhhhhc-----cccceEeEEEe-cccccccccceeccccc---
Confidence 9999986 257999999999999999999986 69999999999 65431 111 111110
Q ss_pred CcccccCCccchhhccceeeeeecCCCCCCCCCCcceeeccccCCCCCCCCCCCCCceecCCCCC
Q 006742 549 PSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSEDVPWSWDKRYTK 613 (633)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~vPy~LP~~~Y~~~D~PW~~~~~y~~ 613 (633)
.+.. +.....+.|||||+||++||+++|+||+++.+|.+
T Consensus 505 -------------------------~d~~-~~~~~~~~~~vPydlP~~~Y~~~D~Pw~~~~~~~~ 543 (544)
T 1q32_A 505 -------------------------RDRR-GCAGNPTHVAVPFTLPVIPYDLAEDECFCLARHEN 543 (544)
T ss_dssp -------------------------GC--------CCSEEESSCSSCEECCTTTCCBCCC-----
T ss_pred -------------------------ccCc-ccccCcccccccCCCCcccCCCCCCCccccccccc
Confidence 0000 00112367999999999999999999999999975
No 3
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=100.00 E-value=5.2e-98 Score=816.51 Aligned_cols=399 Identities=19% Similarity=0.302 Sum_probs=313.4
Q ss_pred CceEEEEecCCCCC----CCCCeeEecC----CchhhhhhhhcccCHHhhhccCCCCCCCCeEEEEeCCCCch-----h-
Q 006742 162 STFRLLRVQGLPAW----ANTSCVSIRD----GDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGT-----L- 227 (633)
Q Consensus 162 ~~F~Lt~i~g~~~~----~N~~~Itl~D----gdl~~ailfnF~~Dl~WLl~~~p~~~~~~~v~Vv~ge~~~~-----~- 227 (633)
.+|||+++++++.+ .|.++|+|+| .+|+.|++||||+|++|||++|+.. ++.|+||+++.+.. .
T Consensus 3 ~~fkL~~~~~y~~~~~~~~n~d~ItL~DlL~~~~L~~avlfnF~~Di~WLl~~~~~~--~~~v~iv~~~g~~~~~~~~~~ 80 (470)
T 3sq7_A 3 AVFKLMKSDFYEREDFMGEVEDMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQN--VENITIVGQKGTIMPIEARAM 80 (470)
T ss_dssp CEEEEECCTTTSCCC-------EECHHHHHCCTTEEEEEEECSCEEHHHHHTTSCTT--CCEEEEEEETTSEECCCGGGC
T ss_pred CceEEEeecCcCccccccCCCCceeHHHhcCCchHHHHHhhhhhhcHHHHHhhCccc--cCceEEEEeCCcccccchhhh
Confidence 57999999999987 6889999999 4678899999999999999999853 34567776443321 1
Q ss_pred -hhhhhcCCCceEEecCCCCCCCCCccceeEEEEeCCc-cEEEEeCCCCCccccccccceEEeecccCCCCCCCCCCCCc
Q 006742 228 -EHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGF 305 (633)
Q Consensus 228 -~~~~~~~~~n~~l~~p~mp~~fGtHHSKmmLL~y~dg-lRVVI~TANLi~~DW~~~tQ~vW~qDfP~~~~~s~~~~t~F 305 (633)
+...+. .+|+++|.|+|| +|||||||||||+|+|| ||||||||||+++||+..||+||. +|+++......+++|
T Consensus 81 ~~~~~~~-~~nv~~i~~~mP-~fGthHsKmmlL~y~dg~~RVvI~TANl~~~Dw~~~tq~~W~--~P~l~~~~~~~~s~F 156 (470)
T 3sq7_A 81 DATLAVI-LKKVKLIEITMP-PFASHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCWC--SPLLKIGKEGLPVPF 156 (470)
T ss_dssp CHHHHHH-HTTEEEEEECCC-TTCCBCCCEEEEEETTSEEEEEEESSCBSHHHHHSSBCEEEE--CCCEEECCCCSCCHH
T ss_pred hHHHHhh-cCCceEEecCCC-CcCCccceeEEEEecCCCEEEEEecCCCChhhhcccceEEEE--ccCCcCCCCCCCCcc
Confidence 112222 258999999999 99999999999999998 999999999999999999999995 555532223456799
Q ss_pred HHHHHHHHHhCCCCccccCCCCCCCcccccccccccccccc-ceEEEEccCCCCCCCccccccHHHHHHHHhhccccC--
Q 006742 306 ENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEK-- 382 (633)
Q Consensus 306 k~DL~~YL~ay~~~~~~~~~p~l~~~~i~~~~L~~yDFS~a-~v~LVaSVPG~h~g~~~~~~G~~~L~~~L~~~~~~~-- 382 (633)
++||++||++|+.+.+. ..+++.|++||||.+ +|+||+||||+|. .|||++|+++|+++.+..
T Consensus 157 k~dL~~yL~~y~~~~l~---------~~~i~~l~~~DFS~~~~v~lV~SvPG~~~-----~~G~~~L~~~L~~~~~~~~~ 222 (470)
T 3sq7_A 157 KRSLIEYLNSYHLKDID---------ELITKSVEEVNFAPLSELEFVYSTPSKFQ-----SSGLLSFYNKLEKLSAGTSA 222 (470)
T ss_dssp HHHHHHHHHTTCCHHHH---------HHTHHHHHTEECGGGTTCEEEEECCCTTS-----CCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHhCCchhH---------HHHHHHHHhCCCCCCCcEEEEEecCCCCc-----cchHHHHHHHHHHhccCCCc
Confidence 99999999999987531 112588999999999 5999999999984 599999999999987642
Q ss_pred CCcccCeEEEecCCCc-CCh----HHHHH-HHhcccCCCCC------CC----CC----------CCCCCceEEccCchh
Q 006742 383 GFKKSPLVYQFSSLGS-LDE----KWMAE-LSSSMSSGFSE------DK----TP----------LGIGEPLIVWPTVED 436 (633)
Q Consensus 383 ~~~~~~i~~Q~SSIGs-l~~----~wL~~-f~~sl~~g~~~------~~----~~----------~~~~~~~IIfPT~e~ 436 (633)
..++++|+||+||||+ ++. +||++ |..+|++.... .+ .+ ....+++|||||+||
T Consensus 223 ~~~~~~iv~Q~SSIGs~l~~~~~~~~f~~~l~~~lsg~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~iIfPTvee 302 (470)
T 3sq7_A 223 SDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQE 302 (470)
T ss_dssp CSSCEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC-----------CCCHHHHHHHHHHTTEEEEEECCBTGG
T ss_pred ccCCCcEEEEeCCcccCCCCccchhHHHHHHHHHhhcccCccccccccccccccCCccchhhhhccCCCCeEEEcCCHHH
Confidence 3357899999999999 984 58876 44455532211 01 01 012468999999999
Q ss_pred hhcCcccccCCCcccCCCccch--hHhHH---HHHhhhcCC--CCCCCCCCCcceeEEeecC------------CceeEE
Q 006742 437 VRCSLEGYAAGNAIPSPQKNVD--KDFLK---KYWAKWKAS--HTGRSRAMPHIKTFARYNG------------QKLAWF 497 (633)
Q Consensus 437 Vr~S~~G~~~GGsi~~~~~~~~--~~~l~---~~~~kw~~~--~s~R~~a~PHiKty~R~~~------------~~i~W~ 497 (633)
||+|++||.+|||||++.++.. +.||+ ++||||+++ ..+|++||||||||+|++. +.++||
T Consensus 303 Vr~S~~Gy~aGgsip~~~~~~~~q~~~l~~~~~~~~kw~~~~~~~~R~~a~PHiKtY~r~s~~~~~~~~~~~~~~~i~W~ 382 (470)
T 3sq7_A 303 FVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVTRRRGTTPANSKFYMHCATNSAGPCDASQVFKELEWC 382 (470)
T ss_dssp GTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTSCTTTTTCCBCCEEEEEEEC--------CCTTSEESEE
T ss_pred HhcCccccccCceeeecccchHHHHHHHhcccceEecccCcCCCCCCCCcCCceEEEEEecccccccccccCCCceeeEE
Confidence 9999999999999999976553 36887 899999986 5689999999999999974 579999
Q ss_pred EEeccccchhhhhccccCCceeeeeeeeeeeEEcCCcccCCCccccccCCCCcccccCCccchhhccceeeeeecCCCCC
Q 006742 498 LLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSD 577 (633)
Q Consensus 498 lltSaNLSkaAWG~l~k~~~ql~IrNyElGVL~~P~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 577 (633)
|||||||||||||++++ +||||||||||+|.++.+..++.|.++.+...+ .
T Consensus 383 LlTSaNLSkaAWG~l~k-----~irsYElGVL~~p~~~~~~~~~~~~~~~~~~~~-----------------------~- 433 (470)
T 3sq7_A 383 LYTSANLSQTAWGTVSR-----KPRNYEAGVLYHSRRLANTRKVTCRTFTRDRRG-----------------------C- 433 (470)
T ss_dssp EEESCCBSHHHHCCSSS-----CCSSBEEEEEEEGGGSSSSCCEEEEEGGGC----------------------------
T ss_pred EEecccCCHHHhhhhcc-----CCcceeeeEEEccccccccceeecccccccccc-----------------------c-
Confidence 99999999999999987 689999999999998866544556554321100 0
Q ss_pred CCCCCcceeeccccCCCCCCCCCC-CCCceecCCCC
Q 006742 578 AGASSEVVYLPVPYELPPQRYSSE-DVPWSWDKRYT 612 (633)
Q Consensus 578 ~~~~~~~~~~~vPy~LP~~~Y~~~-D~PW~~~~~y~ 612 (633)
....+.|||||+||++||+++ |+|||....|.
T Consensus 434 ---~~~~~~~~vPf~lP~~~Y~~~~D~p~~~~~~~~ 466 (470)
T 3sq7_A 434 ---AGNPTHVAVPFTLPVIPYDLAEDECFCLALEHH 466 (470)
T ss_dssp ------CCSEEESSCSSCEECCTTTCCBCCCCCTTC
T ss_pred ---cCCCceeeecCCCCCccCCCCCCcceeeehhhc
Confidence 012467999999999999999 99999877653
No 4
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.61 E-value=7.7e-16 Score=137.97 Aligned_cols=96 Identities=23% Similarity=0.325 Sum_probs=86.7
Q ss_pred cceeeEeeCCCCccCCCCCCcccCC--CCCccccCCCcc-ccccccccceeEEEecCC-cceEEEeecCCcEEEeeCCcc
Q 006742 4 TKIGYLVPLDNNLREDNSLPKLPLS--QGPNVIGRTNIP-VSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQR 79 (633)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (633)
..+.+|+|++.+ .|.|+|+ .|+++|||+... +.|||+||+|+.|+++.+ |.+.+...|+||..|++
T Consensus 7 ~~~c~L~~~~~~------~~~I~Lp~~~g~~viGR~p~t~I~DkrcSR~hv~L~ad~~~~~v~vk~lG~Np~~vng---- 76 (110)
T 2brf_A 7 PGRLWLESPPGE------APPIFLPSDGQALVLGRGPLTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGT---- 76 (110)
T ss_dssp -CEEEEECSTTS------SCCEECCSTTCCEEECSBTTTTBCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-----
T ss_pred CcEEEEEeCCCC------CCcEEeccCCCCEEEcCCCCcccccccceeeeEEEEEecCCCEEEEEEcccCCcEECC----
Confidence 458899998743 7899996 799999999987 999999999999999886 89999999999999987
Q ss_pred cccCcccccccccCCccccCCCCccceeee
Q 006742 80 KKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (633)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (633)
++|..++++++.+||++||+||.|+|+++-
T Consensus 77 ~~l~k~~~~~L~~GD~leLl~g~y~~~v~f 106 (110)
T 2brf_A 77 QELKPGLEGSLGVGDTLYLVNGLHPLTLRW 106 (110)
T ss_dssp CBCCTTCEEEEETTCEEEEETTEEEEEEEE
T ss_pred EEcCCCCEEEecCCCEEEEccCCeEEEEEe
Confidence 899999999999999999999999998765
No 5
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.56 E-value=4.5e-15 Score=134.61 Aligned_cols=96 Identities=23% Similarity=0.306 Sum_probs=87.5
Q ss_pred cceeeEeeCCCCccCCCCCCcccCC--CCCccccCCCc-cccccccccceeEEEecCC-cceEEEeecCCcEEEeeCCcc
Q 006742 4 TKIGYLVPLDNNLREDNSLPKLPLS--QGPNVIGRTNI-PVSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQR 79 (633)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (633)
..+-+|+|++.+ .|.|+|+ .|+++|||+.. .+.|||+||+|+.|+++.+ |.+.+...|+||..|++
T Consensus 14 ~~~c~L~~~~~~------~~~I~Lp~~~g~~viGRgp~t~I~DkrcSR~qv~L~ad~~~~~v~vk~lG~NP~~vng---- 83 (119)
T 1ujx_A 14 RGRLWLQSPTGG------PPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGV---- 83 (119)
T ss_dssp CCCEEEECCSSS------CCCCCCCTTSCCEEESBBTTTTBCCTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSS----
T ss_pred cceEEEEeCCCC------CCcEEeccCCCCEEEcCCCCcccccccccceeEEEEEecCCCEEEEEEcccCCcEECC----
Confidence 347899998744 7899996 79999999998 8999999999999999886 89999999999999876
Q ss_pred cccCcccccccccCCccccCCCCccceeee
Q 006742 80 KKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (633)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (633)
++|..++++++.+||++||+||.|+|+++-
T Consensus 84 ~~l~k~~~~~L~~GD~l~Ll~g~y~~~v~f 113 (119)
T 1ujx_A 84 QELKPGLSGSLSLGDVLYLVNGLYPLTLRW 113 (119)
T ss_dssp SBCCTTCEEEEETTCCCBCBTTBSCCEEEE
T ss_pred EEecCCCEEEecCCCEEEEecCCeEEEEEe
Confidence 799999999999999999999999999776
No 6
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=99.55 E-value=5.9e-15 Score=136.97 Aligned_cols=97 Identities=23% Similarity=0.290 Sum_probs=88.9
Q ss_pred cceeeEeeCCCCccCCCCCCcccCC--CCCccccCCCc-cccccccccceeEEEecCC-cceEEEeecCCcEEEeeCCcc
Q 006742 4 TKIGYLVPLDNNLREDNSLPKLPLS--QGPNVIGRTNI-PVSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQR 79 (633)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (633)
.++.||+|++.+ .|.|.|+ .|+++|||+.. .+.|||+||+|+.|+++.+ |.+.+...|+||..|++
T Consensus 7 ~~~c~L~p~d~~------~~~I~Lp~~~g~vvIGRgPet~ItDkRcSR~qv~L~ad~~~g~V~Vk~lG~NP~~vng---- 76 (143)
T 1yj5_C 7 RGRLWLQSPTGG------PPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGV---- 76 (143)
T ss_dssp CEEEEEECCTTS------CCCEECCTTTCEEEECSBTTTTBCCSSSCSSCEEEEEETTTTEEEEEECSSSCCEETT----
T ss_pred CCeEEEEecCCC------CCcEEeccCCCCEEEcCCCccccccccccceeEEEEEecCCCeEEEEEcccCCcEECC----
Confidence 458899998743 7899996 79999999998 8999999999999999886 89999999999999986
Q ss_pred cccCcccccccccCCccccCCCCccceeeee
Q 006742 80 KKLSSNEHVSIADGDIIELIPGHHFFKYVTL 110 (633)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 110 (633)
++|..++++++.+||++||+||.|+|+++.+
T Consensus 77 ~~L~k~~~~~L~~GD~LeLl~g~y~f~V~f~ 107 (143)
T 1yj5_C 77 HELKPGLSGSLSLGDVLYLVNGLYPLTLRWE 107 (143)
T ss_dssp EECCTTCEEEECTTCEEESSSSCSEEEEEEE
T ss_pred EEecCCCEEEecCCCEEEEecCCceEEEEec
Confidence 8999999999999999999999999998874
No 7
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.37 E-value=7e-13 Score=117.52 Aligned_cols=95 Identities=21% Similarity=0.383 Sum_probs=84.4
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCcc-ccCCCc-cccccccccceeEEEecCC-cceEEEeecCCcEEEeeCCcccc
Q 006742 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNV-IGRTNI-PVSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQRKK 81 (633)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 81 (633)
+.-||+|.+ ++.|.|.|+.|.+| |||+.. .+.|||.||+|..|+++.+ |.+.+...|+||..|+ -++
T Consensus 3 ~~c~L~~~~------~~~~~I~L~~g~~v~iGR~p~t~I~DkrcSR~h~~L~~~~~~g~v~vk~lg~Np~~vn----g~~ 72 (102)
T 3kt9_A 3 RVCWLVRQD------SRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSID----SVV 72 (102)
T ss_dssp CEEEEEETT------STTCEEECCBTCEEEECSSTTTCCCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEET----TEE
T ss_pred ceEEEEecC------CCCCcEEcCCCCcEEeccCCccccccCcccCcceEEEEecCCCEEEEEECcCCCCeEC----CEE
Confidence 456888864 55899999999997 599988 7999999999999999984 7889999999999994 379
Q ss_pred cCcccccccccCCccccCCCCccceeee
Q 006742 82 LSSNEHVSIADGDIIELIPGHHFFKYVT 109 (633)
Q Consensus 82 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (633)
+..++.+.+.+||+++|.||.|.|+.+-
T Consensus 73 l~k~~~~~L~~GD~l~Ll~~~~~~~v~f 100 (102)
T 3kt9_A 73 IGKDQEVKLQPGQVLHMVNELYPYIVEF 100 (102)
T ss_dssp CCBTCEEEECTTCCEEEETTEEEEEEEE
T ss_pred cCCCCeEEeCCCCEEEEccCCceEEEEe
Confidence 9999999999999999999999998553
No 8
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=97.81 E-value=2.2e-05 Score=70.16 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=72.9
Q ss_pred cceeeEeeCCCCccCCCCCCcccCCCCCccccCC---Ccccccc-ccccceeEEEecC-CcceEEEeecCCcEEEeeCCc
Q 006742 4 TKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT---NIPVSDK-RLSRKHITLTASA-DGSASLVVDGTNPVVVKSGDQ 78 (633)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (633)
...|+|+||+.+. ..+.++|..+..+|||. +|++.|. .+||+|.+|+... +|.+.|.=..+|.+.|+.
T Consensus 2 ~~wg~L~~~~~~~----~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~~~~l~D~S~NGt~vng--- 74 (116)
T 1lgp_A 2 QPWGRLLRLGAEE----GEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINK--- 74 (116)
T ss_dssp CCCEEECCTTCCS----SSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCC---
T ss_pred CCEEEEEEeCCCC----CccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCCeEEEEECCcCCcEECC---
Confidence 4689999997643 24678999999999995 5888775 8999999999984 788877777789888863
Q ss_pred ccccCcccccccccCCccccCCC
Q 006742 79 RKKLSSNEHVSIADGDIIELIPG 101 (633)
Q Consensus 79 ~~~~~~~~~~~i~~~~~~~~~~~ 101 (633)
+++..++.+.+.+||+|.+-..
T Consensus 75 -~~l~~~~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 75 -LKVVKKQTCPLQTGDVIYLVYR 96 (116)
T ss_dssp -CCCCCSSCCCCCTTCEEEEECC
T ss_pred -EEcCCCCcEECCCCCEEEEecc
Confidence 3677777888999999998764
No 9
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=97.15 E-value=0.00046 Score=62.69 Aligned_cols=88 Identities=24% Similarity=0.296 Sum_probs=70.0
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCC-------------CccccCC---Ccccccc-ccccceeEEEecCCcceEEEeec
Q 006742 5 KIGYLVPLDNNLREDNSLPKLPLSQG-------------PNVIGRT---NIPVSDK-RLSRKHITLTASADGSASLVVDG 67 (633)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 67 (633)
.++.|++++.. .|.+.|... ..+|||+ +|++.|. ++||+|..|....+|.+.|.--.
T Consensus 4 ~~~~L~~~~~~------~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~~g~~~l~DlS 77 (127)
T 1g6g_A 4 IVCRVICTTGQ------IPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDGNLLLNDIS 77 (127)
T ss_dssp EEEEEEESSSS------SCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECTTSCEEEEECC
T ss_pred eEEEEEECCCC------CCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECCCCcEEEEECC
Confidence 57888887654 566666544 8999994 7888886 79999999999778888777669
Q ss_pred CCcEEEeeCCcccccCcccccccccCCccccCCCC
Q 006742 68 TNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGH 102 (633)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 102 (633)
+|...|+. +++..++.+.+.+||+|.+=.+.
T Consensus 78 ~NGT~vNg----~~l~~~~~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 78 TNGTWLNG----QKVEKNSNQLLSQGDEITVGVGV 108 (127)
T ss_dssp SSCCEETT----EECCTTCCEECCTTCEEEECTTS
T ss_pred cCCeEECC----EEcCCCCeEEcCCCCEEEECCCc
Confidence 99998862 56777778889999999997654
No 10
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=97.04 E-value=0.00099 Score=62.24 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=74.0
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCccccCC---Cccccccc---------cccceeEEEecCCc----ceEEEeecC
Q 006742 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT---NIPVSDKR---------LSRKHITLTASADG----SASLVVDGT 68 (633)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~ 68 (633)
..|.|++++.. .+.|+|..+..+|||+ +|++.|.. +||+|.+|....++ .+.|.=-.+
T Consensus 29 ~w~~L~~~~~~------~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~St 102 (149)
T 1gxc_A 29 PWARLWALQDG------FANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSG 102 (149)
T ss_dssp CCEEEEECSTT------CCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCS
T ss_pred eeEEEEEcCCC------CceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCC
Confidence 47899998743 4569999999999995 67788875 99999999888764 454554578
Q ss_pred CcEEEeeCCcccccCcccccccccCCccccCCCC-ccceeeee
Q 006742 69 NPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGH-HFFKYVTL 110 (633)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~ 110 (633)
|-..|+ -+++.++.++.+.+||+|.|-... ..|.|.++
T Consensus 103 NGT~VN----g~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~ 141 (149)
T 1gxc_A 103 NGTFVN----TELVGKGKRRPLNNNSEIALSLSRNKVFVFFDL 141 (149)
T ss_dssp SCEEET----TEECCTTCEEECCTTEEEEESSTTCEEEEEEET
T ss_pred CCeEEC----CEECCCCCeEECCCCCEEEECCCCCeEEEEEEC
Confidence 888775 247777888899999999997754 34666664
No 11
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=96.86 E-value=0.0012 Score=60.58 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=72.9
Q ss_pred cceeeEeeCCCCccCCCCCCcccCCCCCccccC---CCccccccccccceeEEEecC-CcceEEEe-ecCCcEEEeeCCc
Q 006742 4 TKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASA-DGSASLVV-DGTNPVVVKSGDQ 78 (633)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 78 (633)
.++|.|+-+.... ..--.++|..|..+||| ++|++.|..+||.|..|.... +|.+.|.= ..+|...|+ ++
T Consensus 22 ~p~g~L~v~~g~~---~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vN--g~ 96 (132)
T 3va4_A 22 EPIGQLRLFSGTH---GPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIV--KP 96 (132)
T ss_dssp CCSEEEEECCBTT---BSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEET--TT
T ss_pred CCcEEEEEEeCCC---CCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCEEEEEECCCCCCeEEC--CE
Confidence 4578888776443 12346888999999999 469999999999999999874 55554443 368998884 44
Q ss_pred ccccCcccccccccCCccccCCCCccceeee
Q 006742 79 RKKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (633)
Q Consensus 79 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (633)
|-.|.+++.+.+.+||+|.+ |..-+.|..
T Consensus 97 ~i~l~~~~~~~L~~GD~I~l--G~~~l~f~~ 125 (132)
T 3va4_A 97 PRVLPPGVSHRLRDQELILF--ADFPCQYHR 125 (132)
T ss_dssp TEEECTTCCEECCTTCEEEE--TTEEEEEEE
T ss_pred EcccCCCCEEECCCCCEEEE--CCEEEEEEE
Confidence 44588888889999999988 444444443
No 12
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=96.66 E-value=0.0012 Score=61.80 Aligned_cols=96 Identities=21% Similarity=0.317 Sum_probs=72.5
Q ss_pred cceeeEeeCCCCccCCCCCCcccCCC-CCccccC---CCccccccccccceeEEEec-------CCcceEEEeecCCcEE
Q 006742 4 TKIGYLVPLDNNLREDNSLPKLPLSQ-GPNVIGR---TNIPVSDKRLSRKHITLTAS-------ADGSASLVVDGTNPVV 72 (633)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 72 (633)
...|.|+.+.++. -..++|.. +..+||| ++|++.|..+||+|.+|... .+|.+.|.=-.+|-+.
T Consensus 16 ~~~~~L~~~~~~~-----g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT~ 90 (151)
T 2jqj_A 16 TCLGHLVNLIPGK-----EQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTF 90 (151)
T ss_dssp CEEEEEEEEETTE-----EEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCEE
T ss_pred CceEEEEEecCCC-----ceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCeE
Confidence 3578999887643 34678875 8999999 57999999999999999983 4566666655899998
Q ss_pred EeeCCcccccCcccccccccCCccccCCC-Cccceeee
Q 006742 73 VKSGDQRKKLSSNEHVSIADGDIIELIPG-HHFFKYVT 109 (633)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~ 109 (633)
|+ | +++..+ .+.+.+||+|.|=.. .+.|.+..
T Consensus 91 VN--g--~~i~~~-~~~L~~GD~I~lG~~~~~~f~~~~ 123 (151)
T 2jqj_A 91 IN--G--NRLVKK-DYILKNGDRIVFGKSCSFLFKYAS 123 (151)
T ss_dssp ET--T--EECCSS-CEEECSSEEEEETTTEEEEEEECS
T ss_pred EC--C--EEcCCC-ceECCCCCEEEECCCcEEEEEEcC
Confidence 86 2 345555 678999999999763 45565544
No 13
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=96.26 E-value=0.0082 Score=56.62 Aligned_cols=95 Identities=24% Similarity=0.337 Sum_probs=68.7
Q ss_pred eeEeeCCCCccCCCCCCcccCCCCC--ccccCC---CccccccccccceeEEEecC--C------------cceEEEeec
Q 006742 7 GYLVPLDNNLREDNSLPKLPLSQGP--NVIGRT---NIPVSDKRLSRKHITLTASA--D------------GSASLVVDG 67 (633)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~ 67 (633)
-.|.|+..... -..|+|.+|. .+|||+ +|++.|..+||.|..|.... + |.+.|.=-.
T Consensus 6 l~L~p~~~~~~----~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlS 81 (158)
T 1dmz_A 6 LTLKPLPDSII----QESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTG 81 (158)
T ss_dssp EEEEECTTSSC----CCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECS
T ss_pred EEEEeCCCCcc----ceEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEECC
Confidence 45677765443 2578888887 999997 68999999999999998754 1 334343337
Q ss_pred CCcEEEeeCCcccccCcccccccccCCcccc---CCCCccceeee
Q 006742 68 TNPVVVKSGDQRKKLSSNEHVSIADGDIIEL---IPGHHFFKYVT 109 (633)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~ 109 (633)
+|-..|+ -+++..+..+.+.+||+|.+ ..|...+.|..
T Consensus 82 tNGT~VN----g~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 122 (158)
T 1dmz_A 82 TNVSYLN----NNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKV 122 (158)
T ss_dssp TTCCEET----TEECCSSEEEECCSSCCEESCCCTTTTCCCCEEE
T ss_pred cCCeEEC----CEEcCCCceEEcCCCCEEEEeecCCCCEEEEEEE
Confidence 8888776 24677777788999999999 44665555554
No 14
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=96.24 E-value=0.011 Score=52.97 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=71.4
Q ss_pred cceeeEeeCCCCccCC-CCCCcccCCCCCccccC-----CCccccccccccceeEEEecCCcceEEEeec-CCcEEEeeC
Q 006742 4 TKIGYLVPLDNNLRED-NSLPKLPLSQGPNVIGR-----TNIPVSDKRLSRKHITLTASADGSASLVVDG-TNPVVVKSG 76 (633)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 76 (633)
....|||-|+.+-... ...-.++|..|..+||| ++|++.|..+||.|..|+.. +|.+.|.-.| +|.+.|+
T Consensus 9 ~~~p~Lv~l~~d~~~s~~~~~~~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~-~~~~~l~dl~S~ngt~vN-- 85 (120)
T 1wln_A 9 EKLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM-DGVVTVTPRSMDAETYVD-- 85 (120)
T ss_dssp GGCCEEEEECSSSCCCSSCCCEEECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES-SSCEEEEESCSSSCEEET--
T ss_pred CCcCEEEEeCCChhhccCccEEEEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEc-CCEEEEEECCCCCCEEEC--
Confidence 4567899888643221 11346889999999996 37999999999999999986 6777777776 8999885
Q ss_pred CcccccCcccccccccCCccccCCCCccceeee
Q 006742 77 DQRKKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (633)
Q Consensus 77 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (633)
++| +. +.+.+.+||.|.+=.. +.|.|..
T Consensus 86 g~~--i~--~~~~L~~GD~I~iG~~-~~~~f~~ 113 (120)
T 1wln_A 86 GQR--IS--ETTMLQSGMRLQFGTS-HVFKFVD 113 (120)
T ss_dssp SCB--CS--SCEEECTTCEEEETTT-EEEEEEC
T ss_pred CEE--cC--CCEECCCCCEEEECCc-eEEEEEC
Confidence 332 32 3457899999988542 5676654
No 15
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=96.24 E-value=0.0073 Score=55.64 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=60.5
Q ss_pred CcccCCCCC-ccccC----CCccccccccccceeEEEecC-CcceEEEe-ecCCcEEEeeCCcccccCcccccccccCCc
Q 006742 23 PKLPLSQGP-NVIGR----TNIPVSDKRLSRKHITLTASA-DGSASLVV-DGTNPVVVKSGDQRKKLSSNEHVSIADGDI 95 (633)
Q Consensus 23 ~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 95 (633)
..++|..+. .+||| ++|++.|..+||+|.+|.... +|.+.|.= ..+|-..|+. +++.++..+.+.+||+
T Consensus 47 ~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~vNg----~~l~~~~~~~L~~gd~ 122 (140)
T 2jpe_A 47 EKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGH----IRLEPHKPQQIPIDST 122 (140)
T ss_dssp EEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSS----CEECSSSCCEECTTCC
T ss_pred eEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCcEEEEECCCCCCeEECC----EECCCCccEECCCCCE
Confidence 467888875 99999 468999999999999999887 46665543 3788888752 4577777888999999
Q ss_pred cccCCCCccc
Q 006742 96 IELIPGHHFF 105 (633)
Q Consensus 96 ~~~~~~~~~~ 105 (633)
|.+=.....|
T Consensus 123 i~~G~~~~~f 132 (140)
T 2jpe_A 123 VSFGASTRAY 132 (140)
T ss_dssp BBCSSCCCCB
T ss_pred EEECCceEEE
Confidence 9995444334
No 16
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=96.20 E-value=0.0098 Score=54.11 Aligned_cols=94 Identities=20% Similarity=0.327 Sum_probs=70.1
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCCCccccC---CCccccccccccceeEEEecCCcceEEEeecCCcEEEeeCCccccc
Q 006742 6 IGYLVPLDNNLREDNSLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKSGDQRKKL 82 (633)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (633)
.-|||=|+++..... .--.+|.+| .+||| ++|++.|..+||+|-.++...+|.+.|.-.++|.+-|+ |+| +
T Consensus 26 ~PhLvnLn~Dp~~s~-~l~y~L~~~-t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~~g~~~l~dl~~ngt~VN--G~~--V 99 (124)
T 3fm8_A 26 KCFLVNLNADPALNE-LLVYYLKEH-TLIGSANSQDIQLCGMGILPEHCIIDITSEGQVMLTPQKNTRTFVN--GSS--V 99 (124)
T ss_dssp -CEEEETTCCTTSSC-CCEEECCSE-EEEESSTTCSEECCSTTCCSSCEEEEECTTSCEEEEECTTCCEEET--TEE--C
T ss_pred ccEEEEeCCCCccCc-eEEEECCCC-eEECCCCCCCEEECCCCeecceEEEEECCCCeEEEEECCCCCEEEC--CEE--c
Confidence 458898888764333 334566676 89999 57999999999999999987789998988899998885 332 2
Q ss_pred CcccccccccCCccccCCCCccceee
Q 006742 83 SSNEHVSIADGDIIELIPGHHFFKYV 108 (633)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~~~ 108 (633)
. +.+.+.+||.|.+=. .++|+|.
T Consensus 100 ~--~~~~L~~GD~I~lG~-~~~FrFn 122 (124)
T 3fm8_A 100 S--SPIQLHHGDRILWGN-NHFFRLN 122 (124)
T ss_dssp C--SCEEECTTCEEEETT-TEEEEEE
T ss_pred C--CcEECCCCCEEEECC-CeEEEEE
Confidence 2 346688999988754 4567664
No 17
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=96.03 E-value=0.0056 Score=54.60 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=63.6
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCCC-ccccCC----CccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcc
Q 006742 6 IGYLVPLDNNLREDNSLPKLPLSQGP-NVIGRT----NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQR 79 (633)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (633)
...|+-++.... --.++|..|. -+|||. +|.+.|..+||+|.+|+... |.+.|.=- .+|...|+ +
T Consensus 12 ~l~L~v~~g~~~----g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~-~~~~l~Dl~S~nGT~vn--g-- 82 (118)
T 1uht_A 12 SLRLVFVKGPRE----GDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS-GNWVIQDLGSSNGTLLN--S-- 82 (118)
T ss_dssp EEEEEESSSTTT----TCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS-SSEEEECCCCSSCCEES--S--
T ss_pred eEEEEEEeCCCC----CcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEEC-CEEEEEECCCCCCeEEC--C--
Confidence 345555543321 2367888874 689997 78999999999999999864 55556555 48999885 2
Q ss_pred cccCcccccccccCCccccCCCC
Q 006742 80 KKLSSNEHVSIADGDIIELIPGH 102 (633)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~ 102 (633)
+++.+.+.+.+.+||+|.+=...
T Consensus 83 ~~l~~~~~~~L~~gd~i~lG~~~ 105 (118)
T 1uht_A 83 NALDPETSVNLGDGDVIKLGEYT 105 (118)
T ss_dssp SBCCTTCEEECCTTEEEEETTTE
T ss_pred EECCCCCeEEcCCCCEEEECCeE
Confidence 35777778889999999985443
No 18
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=95.98 E-value=0.0066 Score=53.99 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=59.2
Q ss_pred CCcccCCCCCccccCC---CccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcccccCcccccccccCCccc
Q 006742 22 LPKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDIIE 97 (633)
Q Consensus 22 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 97 (633)
-..++|..+..+|||. +|.+.|..+||+|.+|... +|.+.|.=- .+|.+.|+ ++ ++. .+.+.+||+|.
T Consensus 23 g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vn--g~--~i~---~~~L~~gd~i~ 94 (115)
T 2xt9_B 23 GSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLE-GGEFQVVDVGSLNGTYVN--RE--PVD---SAVLANGDEVQ 94 (115)
T ss_dssp TCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEE-TTEEEEEECSCSSCEEET--TE--ECS---EEEECTTCEEE
T ss_pred CeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEE-CCEEEEEECCCCCCeEEC--CE--Ecc---eEECCCCCEEE
Confidence 4568888999999996 7999999999999999987 555555544 58999885 33 333 46799999999
Q ss_pred cCCCCccceeee
Q 006742 98 LIPGHHFFKYVT 109 (633)
Q Consensus 98 ~~~~~~~~~~~~ 109 (633)
+ |..-+.|..
T Consensus 95 i--G~~~l~~~~ 104 (115)
T 2xt9_B 95 I--GKFRLVFLT 104 (115)
T ss_dssp E--TTEEEEEEC
T ss_pred E--CCEEEEEEe
Confidence 9 445555444
No 19
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=95.80 E-value=0.0091 Score=51.64 Aligned_cols=77 Identities=29% Similarity=0.396 Sum_probs=57.7
Q ss_pred CCCcccCCCCCccccC---CCccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcccccCcccccccccCCcc
Q 006742 21 SLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDII 96 (633)
Q Consensus 21 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 96 (633)
.--.++|..|..+||| ++|.+.|..+||.|..|... +|...|.-- .+|.+.|+ +++ +. ++.+.+||.|
T Consensus 14 ~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vn--g~~--i~---~~~L~~gd~i 85 (100)
T 3po8_A 14 SGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD-GQVALLADLNSTNGTTVN--NAP--VQ---EWQLADGDVI 85 (100)
T ss_dssp SCCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEEC-SSCEEEEECSCSSCCEET--TEE--CS---EEECCTTCEE
T ss_pred CCcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEe-CCEEEEEECCCCCCEEEC--CEE--Cc---eEECCCCCEE
Confidence 3557899999999999 57999999999999999976 555555544 58999885 332 32 4679999999
Q ss_pred ccCCCCccc
Q 006742 97 ELIPGHHFF 105 (633)
Q Consensus 97 ~~~~~~~~~ 105 (633)
.+=.....|
T Consensus 86 ~iG~~~~~~ 94 (100)
T 3po8_A 86 RLGHSEIIV 94 (100)
T ss_dssp EETTEEEEE
T ss_pred EECCEEEEE
Confidence 985543333
No 20
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=95.76 E-value=0.014 Score=54.04 Aligned_cols=74 Identities=28% Similarity=0.356 Sum_probs=59.0
Q ss_pred CcccCCCCC-ccccCC---Cccccccc----cccceeEEEecCCcceEEEe-ecCCcEEEeeCCcccccCcccccccccC
Q 006742 23 PKLPLSQGP-NVIGRT---NIPVSDKR----LSRKHITLTASADGSASLVV-DGTNPVVVKSGDQRKKLSSNEHVSIADG 93 (633)
Q Consensus 23 ~~~~~~~~~-~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (633)
..++|..+. -+|||+ +|.+.|.. +||+|..|+...+|...|.= ..+|-..|+ .+++.+++.+.+.+|
T Consensus 28 ~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vN----g~~i~~~~~~~L~~G 103 (145)
T 2csw_A 28 GWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLN----RARLEPLRVYSIHQG 103 (145)
T ss_dssp CBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECTTSCEEEEBSSCSSCEEES----SCBCCBTCCEECCSS
T ss_pred CeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcCCCeEEEEECCCCCCeEEC----CEECCCCccEECCCC
Confidence 367776665 489995 68888887 99999999997788775554 478999886 235777778889999
Q ss_pred CccccCC
Q 006742 94 DIIELIP 100 (633)
Q Consensus 94 ~~~~~~~ 100 (633)
|+|.+=.
T Consensus 104 D~I~iG~ 110 (145)
T 2csw_A 104 DYIQLGV 110 (145)
T ss_dssp CCEEESC
T ss_pred CEEEECC
Confidence 9999976
No 21
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=95.74 E-value=0.018 Score=52.92 Aligned_cols=84 Identities=24% Similarity=0.293 Sum_probs=64.5
Q ss_pred CcccCC-CCCccccCC---Cccccccc----cccceeEEEecCCcceEEEee-cCCcEEEeeCCcccccCcccccccccC
Q 006742 23 PKLPLS-QGPNVIGRT---NIPVSDKR----LSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADG 93 (633)
Q Consensus 23 ~~~~~~-~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (633)
..++|. .+.-+|||+ +|.+.|.. +||.|.+|....+|.+.|.=- .+|...|+. +++.....+.+.+|
T Consensus 20 ~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg----~~l~~~~~~~L~~G 95 (138)
T 2pie_A 20 GWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNR----ARLEPLRVYSIHQG 95 (138)
T ss_dssp CBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETT----EECCTTCCEECCTT
T ss_pred CEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcCCCcEEEEECCCCCCeEECC----EEcCCCCcEECCCC
Confidence 367887 456799995 68888988 999999999977887766654 699998863 56777778889999
Q ss_pred CccccCCC-----Cccceeeee
Q 006742 94 DIIELIPG-----HHFFKYVTL 110 (633)
Q Consensus 94 ~~~~~~~~-----~~~~~~~~~ 110 (633)
|+|.+=.. ..-|.|...
T Consensus 96 D~I~lG~~~~~~~~~~f~~~~~ 117 (138)
T 2pie_A 96 DYIQLGVPLENKENAEYEYEVT 117 (138)
T ss_dssp CEEEESCCCTTCSSCSEEEEEE
T ss_pred CEEEECCCCCCCceEEEEEEec
Confidence 99999762 234555553
No 22
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=95.73 E-value=0.0094 Score=53.94 Aligned_cols=93 Identities=26% Similarity=0.384 Sum_probs=67.1
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCccccCC---CccccccccccceeEEEecCCcceEEEeec-CCcEEEeeCCccc
Q 006742 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVDG-TNPVVVKSGDQRK 80 (633)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (633)
..+.|+-+..+... -..++|..+..+|||+ +|.+.|..+||+|..|... +|.+.|.--| +|.+.|+ +++
T Consensus 11 ~~~~L~v~~~~~~~---g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vN--g~~- 83 (128)
T 1r21_A 11 PTRRLVTIKRSGVD---GPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIH-EQEAILHNFSSTNPTQVN--GSV- 83 (128)
T ss_dssp CCEEEEEEEETTEE---EEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC-SSCEEECCCCSSSCCEET--TEE-
T ss_pred CceEEEEEeCCCCC---ceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEE-CCEEEEEECCCCCCEEEC--CEE-
Confidence 35677776642211 2358888899999995 7999999999999999986 4666566554 8999884 333
Q ss_pred ccCcccccccccCCccccCCCCccceeee
Q 006742 81 KLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (633)
Q Consensus 81 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (633)
+. +.+.+.+||+|.+ |..-|.|..
T Consensus 84 -i~--~~~~L~~Gd~i~i--G~~~~~~~~ 107 (128)
T 1r21_A 84 -ID--EPVRLKHGDVITI--IDRSFRYEN 107 (128)
T ss_dssp -CS--SCEECCTTEEEEC--SSCEEEEEE
T ss_pred -CC--CcEEcCCCCEEEE--CCEEEEEEe
Confidence 33 3567999999999 566666555
No 23
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=95.57 E-value=0.011 Score=54.91 Aligned_cols=78 Identities=22% Similarity=0.339 Sum_probs=58.4
Q ss_pred CCcccCCCCCccccCC---CccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcccccCcccccccccCCccc
Q 006742 22 LPKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDIIE 97 (633)
Q Consensus 22 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 97 (633)
-..++|..+..+|||. +|.+.|..+||+|..|... +|.+.|.=- .+|.+.|+ ++ ++. .+.+.+||+|.
T Consensus 58 g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~-~~~~~l~DlgS~NGT~VN--g~--~i~---~~~L~~GD~I~ 129 (143)
T 2kb3_A 58 GARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRIN-EGEFEVVDVGSLNGTYVN--RE--PRN---AQVMQTGDEIQ 129 (143)
T ss_dssp TCEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEE-TTEEEEEESCCSSCCEET--TE--ECS---EEECCTTEEEE
T ss_pred CeEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEE-CCEEEEEECCCcCCeEEC--CE--Ecc---eEECCCCCEEE
Confidence 3467888899999995 7999999999999999985 566655544 48998885 33 333 46799999998
Q ss_pred cCCCCccceeee
Q 006742 98 LIPGHHFFKYVT 109 (633)
Q Consensus 98 ~~~~~~~~~~~~ 109 (633)
+ |..-+.|..
T Consensus 130 i--G~~~l~f~~ 139 (143)
T 2kb3_A 130 I--GKFRLVFLA 139 (143)
T ss_dssp E--TTEEEEEEE
T ss_pred E--CCEEEEEEe
Confidence 8 555555443
No 24
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=95.56 E-value=0.01 Score=56.15 Aligned_cols=72 Identities=31% Similarity=0.444 Sum_probs=54.5
Q ss_pred CCCCcccCCCCCccccC---CCccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcccccCcccccccccCCc
Q 006742 20 NSLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDI 95 (633)
Q Consensus 20 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 95 (633)
++--.++|..+..+||| ++|++.|..+||+|.+|+...+ .+.|.=- .+|.+.|+ ++ ++. ++.+.+||+
T Consensus 75 g~g~~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~~-~~~l~DlgStNGT~VN--G~--~i~---~~~L~~GD~ 146 (157)
T 3oun_A 75 GSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDGQ-VALLADLNSTNGTTVN--NA--PVQ---EWQLADGDV 146 (157)
T ss_dssp TTCCEEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECSS-CEEEEECSCSSCCEET--TE--ECS---EEECCTTCE
T ss_pred CCCeEEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEECC-EEEEEECCCCCCeEEC--CE--ECc---eEECCCCCE
Confidence 34567889999999999 4799999999999999998644 4544443 58999885 32 232 467899999
Q ss_pred cccC
Q 006742 96 IELI 99 (633)
Q Consensus 96 ~~~~ 99 (633)
|.|=
T Consensus 147 I~lG 150 (157)
T 3oun_A 147 IRLG 150 (157)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9874
No 25
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=95.50 E-value=0.021 Score=55.25 Aligned_cols=83 Identities=24% Similarity=0.350 Sum_probs=61.4
Q ss_pred CcccCCCCC--ccccCC---CccccccccccceeEEEecC--C------------cceEEEeecCCcEEEeeCCcccccC
Q 006742 23 PKLPLSQGP--NVIGRT---NIPVSDKRLSRKHITLTASA--D------------GSASLVVDGTNPVVVKSGDQRKKLS 83 (633)
Q Consensus 23 ~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (633)
..|+|..|. .+|||+ +|++.|..+||.|..|.... + |.+.|.=-.+|-..|+ -+++.
T Consensus 42 ~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlStNGT~VN----g~ri~ 117 (182)
T 1qu5_A 42 ESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLN----NNRMI 117 (182)
T ss_dssp SCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCSSSCCEET----TEECC
T ss_pred eEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEECCcCCeEEC----CEEcC
Confidence 578898887 899997 69999999999999999754 1 3343332377777775 24566
Q ss_pred cccccccccCCcccc---CCCCccceeee
Q 006742 84 SNEHVSIADGDIIEL---IPGHHFFKYVT 109 (633)
Q Consensus 84 ~~~~~~i~~~~~~~~---~~~~~~~~~~~ 109 (633)
.+..+.+.+||+|.+ ..|...+.|..
T Consensus 118 ~~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 146 (182)
T 1qu5_A 118 QGTKFLLQDGDEIKIIWDKNNKFVIGFKV 146 (182)
T ss_dssp SSEEEECCTTBCCEEEEEGGGTEEEECCE
T ss_pred CCcceEcCCCCEEEEEEcCCCCEEEEEEE
Confidence 777788999999999 44665555444
No 26
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=95.42 E-value=0.012 Score=51.42 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=59.3
Q ss_pred CCcccCCCCCc-cccCC----CccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcccccCcccccccccCCc
Q 006742 22 LPKLPLSQGPN-VIGRT----NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDI 95 (633)
Q Consensus 22 ~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 95 (633)
--.++|..|.. +|||+ +|++.|..+||+|.+|....+|...|.=- .+|.+.|+ ++ ++.. .+.+.+||+
T Consensus 16 g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vn--g~--~i~~--~~~L~~Gd~ 89 (106)
T 3gqs_A 16 GAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVE--GR--KIEH--QSTLSANQV 89 (106)
T ss_dssp TCEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECTTSCEEEEECSCSSCCEET--TE--ECSS--EEECCTTCC
T ss_pred cEEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECCCCcEEEEECcCCCCeEEC--CE--ECCC--CeECCCCCE
Confidence 34688888876 79996 58999999999999999988887766554 68988884 22 2332 356999999
Q ss_pred cccCCCCccceeee
Q 006742 96 IELIPGHHFFKYVT 109 (633)
Q Consensus 96 ~~~~~~~~~~~~~~ 109 (633)
|.+ |..-+.+..
T Consensus 90 i~~--G~~~~~~~~ 101 (106)
T 3gqs_A 90 VAL--GTTLFLLVD 101 (106)
T ss_dssp EEE--TTEEEEEEE
T ss_pred EEE--CCEEEEEEc
Confidence 988 455555444
No 27
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=95.33 E-value=0.022 Score=53.48 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=69.1
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCCCccccCC------CccccccccccceeEEEecCCc----ceEEEeecCCcEEEee
Q 006742 6 IGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT------NIPVSDKRLSRKHITLTASADG----SASLVVDGTNPVVVKS 75 (633)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (633)
.-|||-|+++....+ +=-..|.+|..+|||. +|++.|..+||+|-.|+...++ .+.+....+|.+.|+.
T Consensus 38 ~PhLvnLn~Dp~ls~-~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG 116 (154)
T 4ejq_A 38 TPHLVNLNEDPLMSE-CLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNG 116 (154)
T ss_dssp SCEEEECCCCTTCSS-EEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETT
T ss_pred CceEEEecCCcccCc-eEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCceEECC
Confidence 457888887754322 2235788999999994 6999999999999999988765 3445556788888853
Q ss_pred CCcccccCcccccccccCCccccCCCCccceeee
Q 006742 76 GDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (633)
Q Consensus 76 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (633)
+ ++ .+.+.+.+||.|.+= ..++|.|..
T Consensus 117 --~--~i--~~~~~L~~GD~I~~G-~~~~Frf~~ 143 (154)
T 4ejq_A 117 --K--KV--TEPSILRSGNRIIMG-KSHVFRFNH 143 (154)
T ss_dssp --E--EC--CSCEECCTTCEEEET-TTEEEEEEC
T ss_pred --E--Ec--CCceECCCCCEEEEC-CcEEEEEcC
Confidence 2 23 235668999999873 346787776
No 28
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=95.23 E-value=0.01 Score=56.32 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=65.4
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCC-----------CccccCC---Ccccccc-ccccceeEEEecCCcceEEEeecCCc
Q 006742 6 IGYLVPLDNNLREDNSLPKLPLSQG-----------PNVIGRT---NIPVSDK-RLSRKHITLTASADGSASLVVDGTNP 70 (633)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (633)
++.|+.+..... -..++|..+ ..+|||+ +|++.|. ++||+|..|....+|.+.|.=-.+|.
T Consensus 33 ~~~L~v~~G~~~----g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~~g~~~l~DlS~NG 108 (164)
T 1g3g_A 33 VCRVICTTGQIP----IRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDGNLLLNDISTNG 108 (164)
T ss_dssp CEEEECSSSSSC----CEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECSTTCEEEEECCSSC
T ss_pred cEEEEEecCCCC----CeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECCCCCEEEEECCCCC
Confidence 566766653321 234555544 7899994 6888886 79999999999778877776668999
Q ss_pred EEEeeCCcccccCcccccccccCCccccCCC
Q 006742 71 VVVKSGDQRKKLSSNEHVSIADGDIIELIPG 101 (633)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 101 (633)
..|+. +++..+..+.+.+||+|.+=..
T Consensus 109 T~vNg----~~i~~~~~~~L~~GD~I~iG~~ 135 (164)
T 1g3g_A 109 TWLNG----QKVEKNSNQLLSQGDEITVGVG 135 (164)
T ss_dssp EEETT----EEECTTEEEECCTTCEEEESCS
T ss_pred eEECC----EEcCCCCceEcCCCCEEEECCC
Confidence 98863 5677777788999999999765
No 29
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=95.00 E-value=0.019 Score=52.76 Aligned_cols=80 Identities=30% Similarity=0.410 Sum_probs=60.1
Q ss_pred cccCCCC-----CccccCC---CccccccccccceeEEEecCCc-ceEEEeec-CCcEEEeeCCcccccC--------cc
Q 006742 24 KLPLSQG-----PNVIGRT---NIPVSDKRLSRKHITLTASADG-SASLVVDG-TNPVVVKSGDQRKKLS--------SN 85 (633)
Q Consensus 24 ~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~--------~~ 85 (633)
.++|..| ..+|||+ +|.+.|..+||+|.+|+...++ .+.|.=-| +|-..|+. +++. ++
T Consensus 21 ~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~DlgS~NGT~vNg----~~i~~~~~~~~~~~ 96 (139)
T 1mzk_A 21 QHAVNSTSSSKLPVKLGRVSPSDLALKDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNS----HSISHPDLGSRKWG 96 (139)
T ss_dssp EEEECTTCSTTCSEEEESSSSCSEECCCTTSSSEEEEEEEETTTTEEEEEETTCSSCCEETT----EESSCCCTTTCCCC
T ss_pred EEEecCCCCccceEEeeCCCCCCEEeCCCCCChHHcEEEEECCCCEEEEEECCCCCCEEECC----EECcCcccccccCC
Confidence 5677776 5699994 7999999999999999999875 66666554 89988852 2333 35
Q ss_pred cccccccCCccccCCCCccceeee
Q 006742 86 EHVSIADGDIIELIPGHHFFKYVT 109 (633)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~~~~~~~ 109 (633)
+.+.+.+||+|.+ |..-+.+..
T Consensus 97 ~~~~L~~GD~I~i--G~~~~~~~~ 118 (139)
T 1mzk_A 97 NPVELASDDIITL--GTTTKVYVR 118 (139)
T ss_dssp CCEECCTTEEEEC--SSSCEEEEE
T ss_pred ceEECCCCCEEEE--CCEEEEEEE
Confidence 6788999999998 555555444
No 30
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=94.99 E-value=0.028 Score=51.27 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=54.4
Q ss_pred CcccCCCCCccccCC---CccccccccccceeEEEecC--Ccc--eEEEee------cCCcEEEeeCCcccccCcccccc
Q 006742 23 PKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASA--DGS--ASLVVD------GTNPVVVKSGDQRKKLSSNEHVS 89 (633)
Q Consensus 23 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 89 (633)
-.++|..+..+|||. +|++.|..+||+|.+|.... ||. ..|.=- .+|.+.|+ ++| +.. +.
T Consensus 23 ~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT~vN--g~~--i~~---~~ 95 (131)
T 3hx1_A 23 REVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMIN--GKK--VQE---HI 95 (131)
T ss_dssp EEEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCEEET--TEE--ESE---EE
T ss_pred EEEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCceEEC--CEE--eEe---EE
Confidence 468888899999994 89999999999999998763 453 434332 68999884 332 332 77
Q ss_pred cccCCccccCCCCccc
Q 006742 90 IADGDIIELIPGHHFF 105 (633)
Q Consensus 90 i~~~~~~~~~~~~~~~ 105 (633)
+.+||+|.+=.....|
T Consensus 96 L~~GD~I~iG~~~~~~ 111 (131)
T 3hx1_A 96 IQTGDEIVMGPQVSVR 111 (131)
T ss_dssp CCTTCEEECSTTCEEE
T ss_pred CCCCCEEEECCEEEEE
Confidence 9999999986655444
No 31
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=94.99 E-value=0.025 Score=53.76 Aligned_cols=77 Identities=22% Similarity=0.376 Sum_probs=57.6
Q ss_pred CcccCCCCCccccCC---CccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcccccCcccccccccCCcccc
Q 006742 23 PKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDIIEL 98 (633)
Q Consensus 23 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 98 (633)
..++|..+..+|||+ +|++.|..+||+|..|... +|.+.|.=- .+|-+.|+ ++| +. .+.+.+||+|.+
T Consensus 68 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~-~~~~~l~DlgS~NGT~VN--g~~--i~---~~~L~~GD~I~i 139 (162)
T 2kfu_A 68 SRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLE-NNEFNVVDVGSLNGTYVN--REP--VD---SAVLANGDEVQI 139 (162)
T ss_dssp CEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEE-TTEEEEECCCCSSCEEET--TBC--CS---EEECCSSCEEEE
T ss_pred eEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEE-CCEEEEEECCCCCCeEEC--CEE--cc---eEECCCCCEEEE
Confidence 467888889999996 7999999999999999986 555555544 48999885 332 33 467999999998
Q ss_pred CCCCccceeee
Q 006742 99 IPGHHFFKYVT 109 (633)
Q Consensus 99 ~~~~~~~~~~~ 109 (633)
|..-+.|..
T Consensus 140 --G~~~l~f~~ 148 (162)
T 2kfu_A 140 --GKFRLVFLT 148 (162)
T ss_dssp --TTEEEEEEC
T ss_pred --CCEEEEEEe
Confidence 445554443
No 32
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.90 E-value=0.05 Score=57.93 Aligned_cols=78 Identities=24% Similarity=0.429 Sum_probs=58.6
Q ss_pred CcccCCCCCccccCC---CccccccccccceeEEEecCCcceEEEe-ecCCcEEEeeCCcccccCcccccccccCCcccc
Q 006742 23 PKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVV-DGTNPVVVKSGDQRKKLSSNEHVSIADGDIIEL 98 (633)
Q Consensus 23 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 98 (633)
..++|..+.++|||+ +|++.|..+||+|..|.... |.+.|.= ..+|.+.|+ |+ ++. ..+.+.+||+|.+
T Consensus 299 ~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~~-~~~~l~Dl~S~nGt~vn--g~--~i~--~~~~L~~gd~i~~ 371 (388)
T 2ff4_A 299 RGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTG-TNYVINDLRSSNGVHVQ--HE--RIR--SAVTLNDGDHIRI 371 (388)
T ss_dssp CEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECS-SCEEEEECSCSSCCEET--TE--ECS--SEEEECTTCEEEE
T ss_pred cEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEEC-CEEEEEECCCCCCeEEC--CE--ECC--CceECCCCCEEEE
Confidence 468899999999995 79999999999999999864 4454444 358999885 33 332 4677999999998
Q ss_pred CCCCccceeee
Q 006742 99 IPGHHFFKYVT 109 (633)
Q Consensus 99 ~~~~~~~~~~~ 109 (633)
= ..-|.+..
T Consensus 372 G--~~~~~~~~ 380 (388)
T 2ff4_A 372 C--DHEFTFQI 380 (388)
T ss_dssp T--TEEEEEEC
T ss_pred C--CEEEEEEe
Confidence 4 45555444
No 33
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=93.63 E-value=0.039 Score=52.11 Aligned_cols=90 Identities=17% Similarity=0.281 Sum_probs=63.0
Q ss_pred EeeCCCCccCCCCCCcccCCCCCc-cccCC------------------CccccccccccceeEEEecCCc-ceEEEe---
Q 006742 9 LVPLDNNLREDNSLPKLPLSQGPN-VIGRT------------------NIPVSDKRLSRKHITLTASADG-SASLVV--- 65 (633)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 65 (633)
|+.++.+.+.+..+..+.|..+.- +|||+ +|++.|..+||.|..|....++ ...+.+
T Consensus 34 l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl 113 (158)
T 3els_A 34 LVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDL 113 (158)
T ss_dssp EEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEEC
T ss_pred EEEEeCCccCcccceEEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeC
Confidence 555655554445677889988764 78995 6777889999999999987665 212222
Q ss_pred ecCCcEEEeeCCcccccCcccccccccCCccccCCCC
Q 006742 66 DGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGH 102 (633)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 102 (633)
..||-..|+. +++..+....+.+||+|.+=...
T Consensus 114 ~StNGT~VNg----~ri~~~~~~~L~~GD~I~~G~s~ 146 (158)
T 3els_A 114 DSSNGTCLNN----VVIPGARYIELRSGDVLTLSEFE 146 (158)
T ss_dssp SCSSCCEETT----EECCTTCCEECCTTEEEESSSCG
T ss_pred CCCCccEECC----EEcCCCceEEcCCCCEEEECCCC
Confidence 3578888852 45666667779999999885433
No 34
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=92.73 E-value=0.098 Score=55.62 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=57.9
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCccccC---CCcccccc---------ccccceeEEEecC--Cc--ceEEEeecC
Q 006742 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGR---TNIPVSDK---------RLSRKHITLTASA--DG--SASLVVDGT 68 (633)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~~~~--~~--~~~~~~~~~ 68 (633)
..|.|+++..+.. .|+|.++.++||| .++++.|. ++||+|..|.... ++ .+.|.--.+
T Consensus 9 ~~g~l~~~~~~~~------~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~ 82 (419)
T 3i6u_A 9 PWARLWALQDGFA------NLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSG 82 (419)
T ss_dssp CSEEEEECSSSSC------CEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCS
T ss_pred CceEeeecCCCCC------ceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCc
Confidence 4799999987663 7899999999999 67888885 4599999996542 22 244444566
Q ss_pred CcEEEeeCCcccccCcccccccccCCccccCCC
Q 006742 69 NPVVVKSGDQRKKLSSNEHVSIADGDIIELIPG 101 (633)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 101 (633)
|...|+. .++....+..+.++|.+.+-.+
T Consensus 83 nGt~vn~----~~~~~~~~~~l~~~d~i~~~~~ 111 (419)
T 3i6u_A 83 NGTFVNT----ELVGKGKRRPLNNNSEIALSLS 111 (419)
T ss_dssp SCEEETT----EECCTTCEEECCTTEEEEESST
T ss_pred CCceECc----ccccCCCcccCCCCCEeeeecc
Confidence 7777743 2233333344555665555433
No 35
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=92.37 E-value=0.17 Score=46.05 Aligned_cols=82 Identities=15% Similarity=0.254 Sum_probs=54.1
Q ss_pred CCcccCCCCC-ccccC---CCccccccccccceeEEEec----------CCcceEEE-eecCCcEEEeeCCcccccCccc
Q 006742 22 LPKLPLSQGP-NVIGR---TNIPVSDKRLSRKHITLTAS----------ADGSASLV-VDGTNPVVVKSGDQRKKLSSNE 86 (633)
Q Consensus 22 ~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (633)
+..++|.+.+ =+||| ++|++.|..+||+|-.|.-. .++...|. ..-+|-..|+ | +++.++.
T Consensus 32 ~~~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vN--g--~ri~~~~ 107 (130)
T 4h87_A 32 LGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLN--K--TRIPPRT 107 (130)
T ss_dssp EEEEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEET--T--EECCTTC
T ss_pred eeeEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEEC--C--EECCCCc
Confidence 3467776655 47999 57999999999999999521 12222222 1246777674 2 4677777
Q ss_pred ccccccCCccccCCCCccceeee
Q 006742 87 HVSIADGDIIELIPGHHFFKYVT 109 (633)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~~~~ 109 (633)
...+.+||+|.+ |..-..|+.
T Consensus 108 ~~~L~~GD~I~~--G~str~yvl 128 (130)
T 4h87_A 108 YCRVHVGHVVRF--GGSTRLFIL 128 (130)
T ss_dssp CEECCTTCEEEE--TTCSEEEEE
T ss_pred eeECCCCCEEEE--CCceEEEEE
Confidence 788999999988 444444444
No 36
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=90.84 E-value=0.26 Score=48.55 Aligned_cols=91 Identities=16% Similarity=0.278 Sum_probs=62.1
Q ss_pred EeeCCCCccCCCCCCcccCCCC-CccccCC------------------CccccccccccceeEEEecCCc-ceEE-Ee--
Q 006742 9 LVPLDNNLREDNSLPKLPLSQG-PNVIGRT------------------NIPVSDKRLSRKHITLTASADG-SASL-VV-- 65 (633)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-- 65 (633)
|.-++.+.+.+..+..++|.++ .=+|||+ +|++.|..+||.|..|....++ .... .+
T Consensus 81 L~v~k~g~k~~~~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DL 160 (205)
T 3elv_A 81 LVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDL 160 (205)
T ss_dssp EEEEEGGGCTTCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEEC
T ss_pred EEEEeCCCcccccceEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeC
Confidence 3334333333345678999764 4699995 8899999999999999876544 2112 22
Q ss_pred ecCCcEEEeeCCcccccCcccccccccCCccccCCCCc
Q 006742 66 DGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGHH 103 (633)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 103 (633)
..||-..|+. +++.+...+.+.+||+|.+=....
T Consensus 161 gStNGTfVNG----~rI~~~~~~~L~~GD~I~fG~s~r 194 (205)
T 3elv_A 161 DSSNGTCLNN----VVIPGARYIELRSGDVLTLSEFEE 194 (205)
T ss_dssp SCSSCCEETT----EECCBTSCEECCTTCEEESSSSGG
T ss_pred CCCCCCeECC----EECCCCceeECCCCCEEEECCCCC
Confidence 3677777752 467777777899999999876543
No 37
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=89.82 E-value=0.61 Score=44.96 Aligned_cols=97 Identities=19% Similarity=0.254 Sum_probs=70.2
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCccccCC------CccccccccccceeEEEecCC----cceEEEeecCCcEEEe
Q 006742 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT------NIPVSDKRLSRKHITLTASAD----GSASLVVDGTNPVVVK 74 (633)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 74 (633)
..-|||-||++...++. =-..|.+|...|||. +|+...-.+++.|-.++...+ |.+.|.....+.+.|+
T Consensus 67 ~~PhLvnLn~Dp~ls~~-l~y~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t~VN 145 (184)
T 4egx_A 67 KTPHLVNLNEDPLMSEC-LLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVN 145 (184)
T ss_dssp SSCEEEECCCCTTCSSC-SEEECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCEEET
T ss_pred CCceEEeccCCcccCce-EEEEECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCeEEEc
Confidence 45689999888654433 356788999999995 589999999999999998754 4566666656677665
Q ss_pred eCCcccccCcccccccccCCccccCCCCccceeee
Q 006742 75 SGDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (633)
Q Consensus 75 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (633)
. . .+ .+.+...+||.|-|= .+|+|.|.+
T Consensus 146 G--~--~I--~~~~~L~~GDrI~lG-~~h~Frfn~ 173 (184)
T 4egx_A 146 G--K--KV--TEPSILRSGNRIIMG-KSHVFRFNH 173 (184)
T ss_dssp T--E--EC--CSCEECCTTCEEEET-TTEEEEEEC
T ss_pred C--E--Ec--cccEEcCCCCEEEEC-CCCEEEECC
Confidence 3 2 22 245568888888543 567888876
No 38
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=84.59 E-value=0.77 Score=41.43 Aligned_cols=39 Identities=28% Similarity=0.164 Sum_probs=30.6
Q ss_pred CCCcceeEEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcC
Q 006742 479 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 532 (633)
Q Consensus 479 a~PHiKty~R~~~~~i~W~lltSaNLSkaAWG~l~k~~~ql~IrNyElGVL~~P 532 (633)
...|.|+++-.. .++++||+|++..+.. .|+|++|++..
T Consensus 91 ~~~H~K~~iiD~----~~~~iGS~N~~~~~~~-----------~n~E~~~~i~~ 129 (155)
T 1byr_A 91 PIQHDKVIIVDN----VTVETGSFNFTKAAET-----------KNSENAVVIWN 129 (155)
T ss_dssp SCCCCCEEEETT----TEEEEESCCBSHHHHH-----------TSCEEEEEEES
T ss_pred ccccceEEEECC----CEEEEECCCCCccccc-----------cCcccEEEEcC
Confidence 468999998743 4899999999987653 38999998843
No 39
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=81.08 E-value=1.5 Score=42.14 Aligned_cols=39 Identities=15% Similarity=-0.007 Sum_probs=30.9
Q ss_pred CCCCcceeEEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 006742 478 RAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 531 (633)
Q Consensus 478 ~a~PHiKty~R~~~~~i~W~lltSaNLSkaAWG~l~k~~~ql~IrNyElGVL~~ 531 (633)
...+|.|+++-.. .++++||+|++..|.. .|+|.++++.
T Consensus 120 ~~~~H~K~~viD~----~~~~~GS~N~t~~~~~-----------~n~E~~~~i~ 158 (196)
T 4ggj_A 120 LGYMHHKFAIVDK----KVLITGSLNWTTQAIQ-----------NNRENVLIME 158 (196)
T ss_dssp SSCCCCEEEEETT----TEEEEESCCBCHHHHH-----------HCCEEEEEEC
T ss_pred cccccCcEEEEcc----eEEEecCccCChhhhc-----------ccceeEEEEE
Confidence 4567999988643 3799999999998874 3899999873
No 40
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=78.78 E-value=1.3 Score=48.48 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=33.4
Q ss_pred CCCCCcceeEEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 006742 477 SRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 531 (633)
Q Consensus 477 ~~a~PHiKty~R~~~~~i~W~lltSaNLSkaAWG~l~k~~~ql~IrNyElGVL~~ 531 (633)
.....|.|+++-.. .|+++||+||...+|.. |+|+||++.
T Consensus 359 ~~~~lHaK~~vvD~----~~~~vGS~N~d~RS~~l-----------N~E~~~~i~ 398 (458)
T 3hsi_A 359 GDNTYHLKGVWVDD----RYILLTGNNLNPRAWRL-----------DAENGLLIY 398 (458)
T ss_dssp TTBEECCCEEEETT----TEEEEECCCCSHHHHHT-----------CEEEEEEEE
T ss_pred CCCceeEEEEEECC----eEEEecCCCCCcchhhh-----------CceeEEEEe
Confidence 46788999988643 49999999999988853 999999985
No 41
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=77.93 E-value=1.3 Score=40.27 Aligned_cols=49 Identities=27% Similarity=0.538 Sum_probs=40.1
Q ss_pred cccCCCCCccccCC----CccccccccccceeEEEecCCcceEEEeecCCcEEEe
Q 006742 24 KLPLSQGPNVIGRT----NIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVK 74 (633)
Q Consensus 24 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (633)
.++|.+|.=+||.+ +|+..|..+||.|..|....+|.. |. ..+|+..|.
T Consensus 18 ~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g~~-L~-~s~ngt~vd 70 (123)
T 4a0e_A 18 EVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIR-LT-DSAEPLLQE 70 (123)
T ss_dssp EEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTEEE-EE-EESSCCEET
T ss_pred EEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCeEE-EE-eccCCEEEC
Confidence 46777888889985 699999999999999999877765 54 778887664
No 42
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=72.54 E-value=3.1 Score=37.37 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=29.6
Q ss_pred CCCCccceeEEEEeCCccEEEEeCCCCCccccc-cccceEEeec
Q 006742 248 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQD 290 (633)
Q Consensus 248 ~fGtHHSKmmLL~y~dglRVVI~TANLi~~DW~-~~tQ~vW~qD 290 (633)
+.+.+|+|++|. |+-.++|.|+|+...... +.+.++.+.+
T Consensus 89 ~~~~~H~K~~ii---D~~~~~iGS~N~~~~~~~~n~E~~~~i~~ 129 (155)
T 1byr_A 89 NFPIQHDKVIIV---DNVTVETGSFNFTKAAETKNSENAVVIWN 129 (155)
T ss_dssp SSSCCCCCEEEE---TTTEEEEESCCBSHHHHHTSCEEEEEEES
T ss_pred CcccccceEEEE---CCCEEEEECCCCCccccccCcccEEEEcC
Confidence 457899999998 788899999999975332 3445565553
No 43
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=62.99 E-value=4.1 Score=44.61 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=25.9
Q ss_pred CCCCccceeEEEEeCCccEEEEeCCCCCcccccc
Q 006742 248 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNN 281 (633)
Q Consensus 248 ~fGtHHSKmmLL~y~dglRVVI~TANLi~~DW~~ 281 (633)
.++.||.|++|. ||-.++|-++|++..+|-.
T Consensus 162 ~~~r~H~K~~Vi---D~~~a~~Gg~Nl~~d~y~~ 192 (506)
T 1v0w_A 162 AFSWNHSKILVV---DGQSALTGGINSWKDDYLD 192 (506)
T ss_dssp TTBCBCCCEEEE---TTTEEEEESCCCCHHHHTS
T ss_pred ccccceeeEEEE---CCcEEEeeccccCcccccc
Confidence 578999999998 8989999999998655543
No 44
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=54.18 E-value=7.3 Score=37.27 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=21.7
Q ss_pred eEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 006742 495 AWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 531 (633)
Q Consensus 495 ~W~lltSaNLSkaAWG~l~k~~~ql~IrNyElGVL~~ 531 (633)
.++++||+|++..|.. .|||.++++.
T Consensus 165 ~~v~~GS~N~t~~s~~-----------~N~E~~~vi~ 190 (220)
T 4gel_A 165 SIVISGSVNWTALGLG-----------GNWENCIITA 190 (220)
T ss_dssp CEEEEESCCBSHHHHH-----------TSBEEEEEEC
T ss_pred ceEEecCccccccccc-----------cCceEEEEEE
Confidence 5899999999988753 3899999873
No 45
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=48.90 E-value=16 Score=31.92 Aligned_cols=66 Identities=24% Similarity=0.347 Sum_probs=45.1
Q ss_pred CcccCCCCCc-cccCC---CccccccccccceeEEEecCCcceEEEeecCCc-EEEeeCCcccccCcccccccccCCccc
Q 006742 23 PKLPLSQGPN-VIGRT---NIPVSDKRLSRKHITLTASADGSASLVVDGTNP-VVVKSGDQRKKLSSNEHVSIADGDIIE 97 (633)
Q Consensus 23 ~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~ 97 (633)
|-+-|-.+.+ -|||+ ++.+.|+-+||.|-+|.-..+|..-+. -+|- |-|+ |+|- ..+.|..||.|-
T Consensus 13 p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G~~~l~--S~nGtVFVN--Gqrv-----~~~~I~~gDtI~ 83 (102)
T 3uv0_A 13 PAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRGVVRLA--ALVGKIFVN--DQEE-----TVVDIGMENAVA 83 (102)
T ss_dssp CCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETTEEEEE--ESSSCEEET--TEEE-----SEEEECGGGCBT
T ss_pred ccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCceEEEE--eccCcEEEC--CEEe-----eeEEccCCcccc
Confidence 4444455554 38886 688999999999999999989888443 5555 4442 3332 355688888753
No 46
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=47.03 E-value=13 Score=35.44 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=30.4
Q ss_pred CCCCCccceeEEEEeCCccEEEEeCCCCCccccc-cccceEEeec
Q 006742 247 ISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQD 290 (633)
Q Consensus 247 ~~fGtHHSKmmLL~y~dglRVVI~TANLi~~DW~-~~tQ~vW~qD 290 (633)
.+.|.+|.|+||. |+-.+++-|+|++..-+. +.+.++.+.|
T Consensus 118 ~~~~~~H~K~~vi---D~~~~~~GS~N~t~~~~~~n~E~~~~i~~ 159 (196)
T 4ggj_A 118 QDLGYMHHKFAIV---DKKVLITGSLNWTTQAIQNNRENVLIMED 159 (196)
T ss_dssp CSSSCCCCEEEEE---TTTEEEEESCCBCHHHHHHCCEEEEEECC
T ss_pred cccccccCcEEEE---cceEEEecCccCChhhhcccceeEEEEEC
Confidence 3568899999998 888899999999876533 3445555543
No 47
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=43.86 E-value=7.4 Score=40.67 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=28.3
Q ss_pred cccCCCCCccccCCC------ccccccccccceeEEEec
Q 006742 24 KLPLSQGPNVIGRTN------IPVSDKRLSRKHITLTAS 56 (633)
Q Consensus 24 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 56 (633)
++.|..|.-+|||.+ |++.|+-+||+|.+|+..
T Consensus 15 r~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~ 53 (325)
T 3huf_A 15 SRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTIL 53 (325)
T ss_dssp CEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEEC
T ss_pred EEEecCCeEEECCCCCccCceeecCCCCccccceEEEEe
Confidence 577778889999984 478999999999999876
No 48
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=38.32 E-value=27 Score=38.04 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=30.2
Q ss_pred CCCccceeEEEEeCCccEEEEeCCCCCccccccccceEEeec
Q 006742 249 FGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD 290 (633)
Q Consensus 249 fGtHHSKmmLL~y~dglRVVI~TANLi~~DW~~~tQ~vW~qD 290 (633)
-+..|+|+||. |+-.++|-|+||...-+. +-++.+.+
T Consensus 436 ~~~lHaK~~vv---D~~~~~vGS~N~d~rS~~--E~~l~i~~ 472 (506)
T 1v0w_A 436 PYAQHHKLVSV---DSSTFYIGSKNLYPSWLQ--DFGYIVES 472 (506)
T ss_dssp CCCBCCEEEEE---TTTEEEEESCCSSCCCSB--CEEEEEEC
T ss_pred cccceEEEEEE---CCcEEEEeCCCCCCcchh--hceeEecC
Confidence 45899999998 788899999999887774 55676664
No 49
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=28.95 E-value=46 Score=38.20 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=31.0
Q ss_pred CCcceeEEeec--CCce-eEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 006742 480 MPHIKTFARYN--GQKL-AWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 531 (633)
Q Consensus 480 ~PHiKty~R~~--~~~i-~W~lltSaNLSkaAWG~l~k~~~ql~IrNyElGVL~~ 531 (633)
-.|.|+.+-.. +..+ .|+++||+|+....++. |.|+|+++.
T Consensus 432 k~H~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~~-----------n~D~~l~i~ 475 (687)
T 1xdp_A 432 KIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARL-----------YTDYSLLTA 475 (687)
T ss_dssp EECCEEEEEEEEETTEEEEEEEEESSCSCTTGGGT-----------EEEEEEEEC
T ss_pred cccceEEEEEeccCCeEEEEEEEeCCcCCcchhhh-----------cceEEEEEe
Confidence 37999977543 3555 89999999998765432 789999885
No 50
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=22.81 E-value=38 Score=36.77 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=39.6
Q ss_pred CCCCccceeEEEEeCCccEEEEeCCCCCccccc-cccceEEeecccCCCCCCCCCCCCcHHHHHHHHHhC
Q 006742 248 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTL 316 (633)
Q Consensus 248 ~fGtHHSKmmLL~y~dglRVVI~TANLi~~DW~-~~tQ~vW~qDfP~~~~~s~~~~t~Fk~DL~~YL~ay 316 (633)
..|.+|+|+|+. |+-.++|-|+||.+.-+. +.+.++.+.+=. ..|..+|...+..+
T Consensus 359 ~~~~lHaK~~vv---D~~~~~vGS~N~d~RS~~lN~E~~~~i~~~~----------~~l~~~l~~~f~~~ 415 (458)
T 3hsi_A 359 GDNTYHLKGVWV---DDRYILLTGNNLNPRAWRLDAENGLLIYDPQ----------QQLLAQVEKEQNQI 415 (458)
T ss_dssp TTBEECCCEEEE---TTTEEEEECCCCSHHHHHTCEEEEEEEECTT----------CSSHHHHHHHHHHH
T ss_pred CCCceeEEEEEE---CCeEEEecCCCCCcchhhhCceeEEEEeCCc----------HHHHHHHHHHHHHH
Confidence 468999999998 777899999999987664 346677776421 23556665555443
No 51
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=22.50 E-value=54 Score=37.58 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=30.5
Q ss_pred CCCCcceeEEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcC
Q 006742 478 RAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 532 (633)
Q Consensus 478 ~a~PHiKty~R~~~~~i~W~lltSaNLSkaAWG~l~k~~~ql~IrNyElGVL~~P 532 (633)
+.+-|.|+|.-.+++ -.|+|+||||+..-.-- +|+|+++.+.-
T Consensus 587 r~Leh~rI~~f~~~d-d~~~~IGSAN~d~Rsl~-----------~n~Ev~~~I~d 629 (687)
T 1xdp_A 587 RYLEHDRVYIFENGG-DKKVYLSSADWMTRNID-----------YRIEVATPLLD 629 (687)
T ss_dssp SSEECCCEEEECGGG-SCEEEEESCCBSHHHHH-----------SEEEEEEECCS
T ss_pred HHhhCCeEEEEcCCC-CCEEEEEcCccchhhhh-----------hheeeeEEecC
Confidence 456688987654432 25999999999754322 59999998853
No 52
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=20.51 E-value=65 Score=32.28 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=37.5
Q ss_pred ceEEEeecC------CcEEEeeCCcccccCcccccccccCCccccCCCCc
Q 006742 60 SASLVVDGT------NPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGHH 103 (633)
Q Consensus 60 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 103 (633)
.|+|.+++. +||.|..||.++.+.+.+......|+.+-|.||-+
T Consensus 140 ~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl~Pg~~ 189 (246)
T 3kmh_A 140 IVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESICLPPGLY 189 (246)
T ss_dssp EEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEEECTTEE
T ss_pred EEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEecCCCCE
Confidence 446666653 59999999999999999999999999999999854
Done!