BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006743
(633 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 24 ASGAKAAELKDPNEQVLRVL-DYSRNSRHL--------LVTAGDDGTLHLWDTTGRSPKV 74
AS K +L + N Q+L+ L +S + R + + +A DD T+ LW+ G+ +
Sbjct: 362 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 421
Query: 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD 134
L HS+ G++FS DD+ IAS DK + ++ + + + + +AF D
Sbjct: 422 --LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 479
Query: 135 WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
+ + + + V ++ G Q L L SSS
Sbjct: 480 QTIASASDDKTVKLWNRNG--QLLQTLTGHSSS 510
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Query: 24 ASGAKAAELKDPNEQVLRVLDYSRNS---------RHLLVTAGDDGTLHLWDTTGRSPKV 74
AS K +L + N Q L+ L +S + +A DD T+ LW+ G+ +
Sbjct: 321 ASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 380
Query: 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD 134
L HS+ G++FS D + IAS DK + ++ + + + + +AF DD
Sbjct: 381 --LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDD 438
Query: 135 WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
+ + + + V ++ G Q L L SSS
Sbjct: 439 QTIASASDDKTVKLWNRNG--QLLQTLTGHSSS 469
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 24 ASGAKAAELKDPNEQVLRVLDYSRNS---------RHLLVTAGDDGTLHLWDTTGRSPKV 74
AS K +L + N Q+L+ L +S + +A DD T+ LW+ G+ +
Sbjct: 157 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 216
Query: 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD 134
L HS+ G++FS D + IAS DK + ++ + + + + + +AF D
Sbjct: 217 --LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG 274
Query: 135 WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
+ + + + V ++ G Q L L SSS
Sbjct: 275 QTIASASDDKTVKLWNRNG--QLLQTLTGHSSS 305
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Query: 24 ASGAKAAELKDPNEQVLRVLDYSRNS---------RHLLVTAGDDGTLHLWDTTGRSPKV 74
AS K +L + N Q+L+ L +S + +A DD T+ LW+ G+ +
Sbjct: 239 ASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQT 298
Query: 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD 134
L HS+ G++FS D + IAS DK + ++ + + + + +AF D
Sbjct: 299 --LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 135 WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
+ + + + V ++ G Q L L SSS
Sbjct: 357 QTIASASDDKTVKLWNRNG--QLLQTLTGHSSS 387
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 24 ASGAKAAELKDPNEQVLRVL-DYSRNSRHL--------LVTAGDDGTLHLWDTTGRSPKV 74
AS K +L + N Q+L+ L +S + R + + +A DD T+ LW+ G+ +
Sbjct: 75 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 134
Query: 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD 134
L HS+ G++FS D + IAS DK + ++ + + + + +AF D
Sbjct: 135 --LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 192
Query: 135 WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
+ + + + V ++ G Q L L SSS
Sbjct: 193 QTIASASDDKTVKLWNRNG--QLLQTLTGHSSS 223
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Query: 24 ASGAKAAELKDPNEQVLRVLDYSRNS---------RHLLVTAGDDGTLHLWDTTGRSPKV 74
AS K +L + N Q+L+ L +S + +A DD T+ LW+ G+ +
Sbjct: 403 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQT 462
Query: 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD 134
L HS+ G++FS D + IAS DK + ++ + + + + +AF D
Sbjct: 463 --LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 520
Query: 135 WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
+ + + + V ++ G Q L L SSS
Sbjct: 521 QTIASASDDKTVKLWNRNG--QLLQTLTGHSSS 551
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Query: 24 ASGAKAAELKDPNEQVLRVLDYSRNS---------RHLLVTAGDDGTLHLWDTTGRSPKV 74
AS K +L + N Q+L+ L +S + +A DD T+ LW+ G+ +
Sbjct: 34 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 93
Query: 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD 134
L HS+ G++FS D + IAS DK + ++ + + + + +AF D
Sbjct: 94 --LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 151
Query: 135 WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
+ + + + V ++ G Q L L SSS
Sbjct: 152 QTIASASDDKTVKLWNRNG--QLLQTLTGHSSS 182
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 11/136 (8%)
Query: 24 ASGAKAAELKDPNEQVLRVL-DYSRNSRHL--------LVTAGDDGTLHLWDTTGRSPKV 74
AS K +L + N Q+L+ L +S + R + + +A DD T+ LW+ G+ +
Sbjct: 444 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 503
Query: 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD 134
L HS+ G++FS D + IAS DK + ++ + + + + +AF D
Sbjct: 504 --LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 561
Query: 135 WILTAGTSNGRVVFYD 150
+ + +S+ V ++
Sbjct: 562 QTIASASSDKTVKLWN 577
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 53 LVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS 112
+ +A DD T+ LW+ G+ + L HS+ G++FS D + IAS DK + ++
Sbjct: 31 IASASDDKTVKLWNRNGQLLQT--LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 88
Query: 113 RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
+ + + + +AF D + + + + V ++ G Q L L SSS
Sbjct: 89 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSS 141
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWI 136
L+ HS+ G++FS D + IAS DK + ++ + + + + +AF D
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 137 LTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
+ + + + V ++ G Q L L SSS
Sbjct: 72 IASASDDKTVKLWNRNG--QLLQTLTGHSSS 100
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIAS 98
L +D N +H++ T G DG L +WD + VS LK H A + F S+ + + +
Sbjct: 239 LHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFT 298
Query: 99 VGLDKKLYTYDPGSRRP 115
D L+ +D + P
Sbjct: 299 CSEDGSLWHWDASTDVP 315
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 13 SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72
S G L L +L +G + VL V +S ++R + V+ D T+ LW+T G
Sbjct: 105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA-FSSDNRQI-VSGSRDKTIKLWNTLGVCK 162
Query: 73 KVSWLKQHSAPTAGISFS--SDDKIIASVGLDKKLYTYD-PGSRRPSSCITYEAPFSSLA 129
+ HS + + FS S + II S G DK + ++ + ++ I + +++
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT 222
Query: 130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLC 174
D + +G +G+ + +D+ T+ + +++LC
Sbjct: 223 VSPDGSLCASGGKDGQAMLWDLNEGKHLYTL----DGGDIINALC 263
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 13 SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72
S G L L +L +G + VL V +S ++R + V+ D T+ LW+T G
Sbjct: 82 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA-FSSDNRQI-VSGSRDKTIKLWNTLGVCK 139
Query: 73 KVSWLKQHSAPTAGISFS--SDDKIIASVGLDKKLYTYD-PGSRRPSSCITYEAPFSSLA 129
+ HS + + FS S + II S G DK + ++ + ++ I + +++
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT 199
Query: 130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLC 174
D + +G +G+ + +D+ T+ + +++LC
Sbjct: 200 VSPDGSLCASGGKDGQAMLWDLNEGKHLYTL----DGGDIINALC 240
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHL 64
D ++A+ S + + + A+G + +EQV ++ S HLL+ G +D L L
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 65 WDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP 124
WD + + + + H+ FS DD+++AS D L +D S I +
Sbjct: 735 WDLNQKECRNT-MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 793
Query: 125 FSS 127
F S
Sbjct: 794 FLS 796
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 53 LVTAGDDGTLHLWDT-TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKK------- 104
+ + G D TL ++ TG K+ +K H +FSSDD IA+ DKK
Sbjct: 637 IASCGADKTLQVFKAETGE--KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 694
Query: 105 ----LYTYDPGSRRPSSC 118
++TYD S + + C
Sbjct: 695 TGKLVHTYDEHSEQVNCC 712
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHL 64
D ++A+ S + + + A+G + +EQV ++ S HLL+ G +D L L
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 65 WDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP 124
WD + + + + H+ FS DD+++AS D L +D S I +
Sbjct: 728 WDLNQKECRNT-MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 786
Query: 125 FSS 127
F S
Sbjct: 787 FLS 789
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 53 LVTAGDDGTLHLWDT-TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKK------- 104
+ + G D TL ++ TG K+ +K H +FSSDD IA+ DKK
Sbjct: 630 IASCGADKTLQVFKAETGE--KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687
Query: 105 ----LYTYDPGSRRPSSC 118
++TYD S + + C
Sbjct: 688 TGKLVHTYDEHSEQVNCC 705
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 158 ---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 185 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 244
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI++ G+ + V ++++ K
Sbjct: 245 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIVS-GSEDNLVYIWNLQTK 291
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 160 ---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 187 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 246
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI++ G+ + V ++++ K
Sbjct: 247 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIVS-GSEDNLVYIWNLQTK 293
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 110 PGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ + + + P S++ F D ++ + + +G +D
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI++ G+ + V ++++ K
Sbjct: 229 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIVS-GSEDNLVYIWNLQTK 275
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 153 V---KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 180 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI+ +G+ + V ++++ K
Sbjct: 240 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIV-SGSEDNLVYIWNLQTK 286
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 139 V---KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI++ G+ + V ++++ K
Sbjct: 226 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIVS-GSEDNLVYIWNLQTK 272
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 139 V---KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI++ G+ + V ++++ K
Sbjct: 226 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIVS-GSEDNLVYIWNLQTK 272
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 142 V---KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI++ G+ + V ++++ K
Sbjct: 229 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIVS-GSEDNLVYIWNLQTK 275
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 141 V---KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 168 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI++ G+ + V ++++ K
Sbjct: 228 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIVS-GSEDNLVYIWNLQTK 274
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 142 V---KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI++ G+ + V ++++ K
Sbjct: 229 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIVS-GSEDNLVYIWNLQTK 275
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 110 PGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ + + + P S++ F D ++ + + +G +D
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI+ +G+ + V ++++ K
Sbjct: 223 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIV-SGSEDNLVYIWNLQTK 269
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 137 V---KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 164 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI+ +G+ + V ++++ K
Sbjct: 224 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIV-SGSEDNLVYIWNLQTK 270
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 110 PGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ + + + P S++ F D ++ + + +G +D
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 159 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI++ G+ + V ++++ K
Sbjct: 219 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIVS-GSEDNLVYIWNLQTK 265
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 136 V---KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI+ +G+ + V ++++ K
Sbjct: 223 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIV-SGSEDNLVYIWNLQTK 269
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 139 V---KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI++ G+ + V ++++ K
Sbjct: 226 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIVS-GSEDNLVYIWNLQTK 272
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 135 V---KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 162 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI++ G+ + V ++++ K
Sbjct: 222 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIVS-GSEDNLVYIWNLQTK 268
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 139 V---KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI+ +G+ + V ++++ K
Sbjct: 226 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIV-SGSEDNMVYIWNLQTK 272
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 51 HLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
+LLV+A DD TL +WD ++G+ K LK HS +F+ +I S D+ + +D
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
+ C+ + P S++ F D ++ + + +G +D
Sbjct: 139 V---KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
L+V++ DG +WDT + + + P + + FS + K I + LD L +D
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYS 225
Query: 110 --------PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154
G + CI F++ + WI++ G+ + V ++++ K
Sbjct: 226 KGKCLKTYTGHKNEKYCI-----FANFSVTGGKWIVS-GSEDNMVYIWNLQTK 272
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
Query: 53 LVTAGDDGTLHLWDT-TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKK------- 104
+ + G D TL ++ TG K+ +K H +FS+DD+ IA+ +DKK
Sbjct: 636 IASCGADKTLQVFKAETGE--KLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSM 693
Query: 105 ----LYTYDPGSRRPSSC 118
++TYD S + + C
Sbjct: 694 TGELVHTYDEHSEQVNCC 711
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 53 LVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS 112
+++AG+D + W+ + ++ H++ ++ S D +IAS G D ++ ++ +
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 113 RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148
++ ++ + SLAF + + L A T+ G VF
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 53 LVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS 112
+++AG+D + W+ + ++ H++ ++ S D +IAS G D ++ ++ +
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 113 RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148
++ ++ + SLAF + + L A T+ G VF
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 53 LVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS 112
+++AG+D + W+ + ++ H++ ++ S D +IAS G D ++ ++ +
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 113 RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148
++ ++ + SLAF + + L A T+ G VF
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 53 LVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS 112
+++AG+D + W+ + ++ H++ ++ S D +IAS G D ++ ++ +
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
Query: 113 RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148
++ ++ + SLAF + + L A T+ G VF
Sbjct: 228 KKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 53 LVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS 112
+++AG+D + W+ + ++ H++ ++ S D +IAS G D ++ ++ +
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 113 RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148
++ ++ + SLAF + + L A T+ G VF
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 53 LVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS 112
+++AG+D + W+ + ++ H++ ++ S D +IAS G D ++ ++ +
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Query: 113 RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148
++ ++ + SLAF + + L A T+ G VF
Sbjct: 222 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 257
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 43 LDYSRNSRHLLVTAGDDGTLHLWDTTG--RSPKV----SWLKQHSAPTAGISFS-SDDKI 95
L ++ N L++A DD T+ LWD + + KV + H+A +S+ + +
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 96 IASVGLDKKLYTYDPGSR---RPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYD 150
SV D+KL +D S +PS + + A + L+F ++IL G+++ V +D
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 151 IR 152
+R
Sbjct: 303 LR 304
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
Y+ ++LAS ++ G + + ++A+G K + + +R L +S +S+ LLVTA DDG
Sbjct: 172 YSPDGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGY 229
Query: 62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
+ ++D + + L H++ ++F DD S DK + +D G+R +C+
Sbjct: 230 IKIYDVQHANLAGT-LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---TCV 283
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 6 DEHLASISLSGDLILHNLASGAKAAELKDP------NEQVLRVLDYSRNSRHLLVTAGDD 59
D +AS S +++ + G L++P + + + ++ + ++++L++AG D
Sbjct: 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXD 153
Query: 60 GTLHLWDT-TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC 118
+ +WD TG + H + +S D +I + DK++ +P R+ +
Sbjct: 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP--RKGTVV 211
Query: 119 ITYEAPFSSL-----AFIDDDWILTAG---TSNGRVVFYDIRGKPQPLTVLRACSSS 167
+ P F+ + ILT G S +V +D + +PL++ +SS
Sbjct: 212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSS 268
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 49 SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY 108
+RH+L + G +H D + ++ L+ HS+ G+++ SD +AS G D + +
Sbjct: 185 NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244
Query: 109 DPGSRRPSSCIT-YEAPFSSLAFIDDDWILTA---GTSNGRVVFYDIRGKPQPLTVLRAC 164
D S P T + A ++A+ L A GT + ++ F++ + TV
Sbjct: 245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV---- 300
Query: 165 SSSEAVSSLCW 175
+ V+SL W
Sbjct: 301 DAGSQVTSLIW 311
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 96 IASVGLDKKLYTYDPGSRRPSSCI-TYEAPF-SSLAFIDDDWILTAGTSNGRVVFYDIRG 153
+ +V L++ +Y ++ S S+ T E+ + +S+ + D L+ G NG V YD+
Sbjct: 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165
Query: 154 KPQPLTVLRACSSSEA-VSSLCWQR 177
+ T LR + +A V L W R
Sbjct: 166 Q----TKLRTMAGHQARVGCLSWNR 186
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 43 LDYSRNSRHLLVTAGDDGTLHLWD--TTGRSPKVSWLKQ----HSAPTAGISFS-SDDKI 95
L ++ N L++A DD T+ LWD T + +V K H+A +++ + +
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 248
Query: 96 IASVGLDKKLYTYDP---GSRRPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYD 150
SV D+KL +D + +PS + + A + L+F ++IL G+++ V +D
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 151 IRG 153
+R
Sbjct: 309 LRN 311
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 43 LDYSRNSRHLLVTAGDDGTLHLWD--TTGRSPKVSWLKQ----HSAPTAGISFS-SDDKI 95
L ++ N L++A DD T+ LWD T + +V K H+A +++ + +
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 246
Query: 96 IASVGLDKKLYTYDP---GSRRPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYD 150
SV D+KL +D + +PS + + A + L+F ++IL G+++ V +D
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 151 IRG 153
+R
Sbjct: 307 LRN 309
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 43 LDYSRNSRHLLVTAGDDGTLHLWDTTG--RSPKV----SWLKQHSAPTAGISFS-SDDKI 95
L ++ N L++A DD T+ LWD + K+ + HSA +++ + +
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 96 IASVGLDKKLYTYDPGSR---RPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYD 150
SV D+KL +D S +PS + + A + L+F ++IL G+++ V +D
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 151 IRG 153
+R
Sbjct: 305 LRN 307
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQ--VLRVLDYSRNSRHLLVTAGDDGTL 62
KD L S + + + ++ +G L+ PN+ + L +++N ++T+ DDGT+
Sbjct: 328 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTV 384
Query: 63 HLWDTTGRSPKVSWLKQHSAPTAGISF---SSDDKIIASVG 100
LWD + + S + G+ + +S+ K++ +VG
Sbjct: 385 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 20 LHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79
L +L SG+ + L+ +++L V +S ++L TA D + LWD S + L Q
Sbjct: 170 LCDLKSGSCSHILQGHRQEILAV-SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 228
Query: 80 H---------SAPTA------GISFSSDDKIIASVGLDKKLYTYD 109
H SA TA G+ F+SD + +VG D ++ ++
Sbjct: 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 43 LDYSRNSRHLLVTAGDDGTLHLWDTTG--RSPKV----SWLKQHSAPTAGISFS-SDDKI 95
L ++ N L++A DD T+ LWD + K+ + HSA +++ + +
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 96 IASVGLDKKLYTYDPGSR---RPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYD 150
SV D+KL +D S +PS + + A + L+F ++IL G+++ V +D
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 151 IRG 153
+R
Sbjct: 305 LRN 307
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Query: 53 LVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP-G 111
+ G DG L +W+T + K H + +S S + K IA+ G DKKL +D
Sbjct: 187 FASVGWDGRLKVWNTNFQIRYT--FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Query: 112 SRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163
P + + +AF + GT G +F + P+ + A
Sbjct: 245 LTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEA 296
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 43 LDYSRNSRHLLVTAGDDGTLHLWD--TTGRSPKVSWLKQ----HSAPTAGISFS-SDDKI 95
L ++ N L++A DD T+ LWD T + +V K H+A +++ + +
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 250
Query: 96 IASVGLDKKLYTYDP---GSRRPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYD 150
SV D+KL +D + +PS + + A + L+F ++IL G+++ V +D
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 151 IRG 153
+R
Sbjct: 311 LRN 313
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV 99
+ + + +SR LLV+A DG L +WD+ + KV + S+ +++ +A
Sbjct: 69 IYAMHWGTDSR-LLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSGNYVACG 126
Query: 100 GLDKKLYTYDPGSRRPSSCITYE-----APFSSLAFIDDDWILTAGTSNGRVVFYDI 151
GLD Y+ +R + ++ E S F+DD+ I+T+ + + +DI
Sbjct: 127 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDI 182
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV 99
+ + + +SR LLV+A DG L +WD+ + KV + S+ +++ +A
Sbjct: 58 IYAMHWGTDSR-LLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 100 GLDKKLYTYDPGSRRPSSCITYE-----APFSSLAFIDDDWILTAGTSNGRVVFYDI 151
GLD Y+ +R + ++ E S F+DD+ I+T+ + + +DI
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDI 171
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV 99
+ + + +SR LLV+A DG L +WD+ + KV + S+ +++ +A
Sbjct: 58 IYAMHWGTDSR-LLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 100 GLDKKLYTYDPGSRRPSSCITYE-----APFSSLAFIDDDWILTAGTSNGRVVFYDI 151
GLD Y+ +R + ++ E S F+DD+ I+T+ + + +DI
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDI 171
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 52 LLVTAGDDGTLHLWD-TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
++V+A +D T+ +WD TG + LK H+ ISF K++AS D + +D
Sbjct: 122 VMVSASEDATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIA 97
+ VL+++ ++ LL++A DDGTL +W G + HS S+ DDK+I+
Sbjct: 250 ISVLEFN-DTNKLLLSASDDGTLRIWH-GGNGNSQNCFYGHSQSIVSASWVGDDKVIS 305
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 87 ISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP---FSSLAFIDDDWILTAGTSN 143
+ +SS + + +V LD +Y + S + E P SS+A+I + L GTS+
Sbjct: 111 VDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 168
Query: 144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCW 175
V +D++ Q + S S V SL W
Sbjct: 169 AEVQLWDVQ---QQKRLRNMTSHSARVGSLSW 197
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 87 ISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP---FSSLAFIDDDWILTAGTSN 143
+ +SS + + +V LD +Y + S + E P SS+A+I + L GTS+
Sbjct: 122 VDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 179
Query: 144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCW 175
V +D++ Q + S S V SL W
Sbjct: 180 AEVQLWDVQ---QQKRLRNMTSHSARVGSLSW 208
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 26/149 (17%)
Query: 14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73
+SG + +HN+ S + +L L N+ + + ++G L WD RSP+
Sbjct: 267 VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL--RSPE 324
Query: 74 V---SWLKQHSAPTAGISFSSDDKIIASVGLDKKL---YTYDPGSRRPSSCITYEAP--- 124
+L P + F++ ++S G D + DP S RP+ I +E P
Sbjct: 325 CPVGEFLINEGTPINNVYFAAGALFVSS-GFDTSIKLDIISDPESERPA--IEFETPTFL 381
Query: 125 ------FSSLAFIDDDWILTAGTSNGRVV 147
S ++ DD SNG V+
Sbjct: 382 VSNDDAVSQFCYVSDD------ESNGEVL 404
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 26/149 (17%)
Query: 14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73
+SG + +HN+ S + +L L N+ + + ++G L WD RSP+
Sbjct: 264 VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL--RSPE 321
Query: 74 V---SWLKQHSAPTAGISFSSDDKIIASVGLDKKL---YTYDPGSRRPSSCITYEAP--- 124
+L P + F++ ++S G D + DP S RP+ I +E P
Sbjct: 322 CPVGEFLINEGTPINNVYFAAGALFVSS-GFDTSIKLDIISDPESERPA--IEFETPTFL 378
Query: 125 ------FSSLAFIDDDWILTAGTSNGRVV 147
S ++ DD SNG V+
Sbjct: 379 VSNDDEVSQFCYVSDD------ESNGEVL 401
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/132 (15%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 48 NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT 107
N + + G D +H++ +G S H A ++FS++ + + +K+
Sbjct: 458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIP 517
Query: 108 YDPGSR----RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163
Y + +S + A + +++ D+ L G+ + V+ +++ +++
Sbjct: 518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 577
Query: 164 CSSSEAVSSLCW 175
+ +V+S+ W
Sbjct: 578 AHAMSSVNSVIW 589
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 96 IASVGLDKKLYTYDPGSRRPSSCITYEAP---FSSLAFIDDDWILTAGTSNGRVVFYDIR 152
+ +V LD +Y + S + E P SS+A+I + L GTS+ V +D++
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97
Query: 153 GKPQPLTVLRACSSSEA-VSSLCW 175
+ + LR +S A V SL W
Sbjct: 98 QQKR----LRNMTSHSARVGSLSW 117
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV 99
+ + + +SR LL++A DG L +WD+ + KV + S+ +++ +A
Sbjct: 58 IYAMHWGTDSR-LLLSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 100 GLDKKLYTYDPGSRRPSSCITYE-----APFSSLAFIDDDWILTAGTSNGRVVFYDI 151
GLD Y+ +R + ++ E S F+DD+ I+T+ + + +DI
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDI 171
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV 99
+ + + +SR LL++A DG L +WD+ + KV + S+ +++ +A
Sbjct: 58 IYAMHWGTDSR-LLLSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 100 GLDKKLYTYDPGSRRPSSCITYE-----APFSSLAFIDDDWILTAGTSNGRVVFYDI 151
GLD Y+ +R + ++ E S F+DD+ I+T+ + + +DI
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDI 171
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 48 NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISF--SSDDKIIASVGLDKKL 105
NS ++TA DGT LWD S H A + S S G DKK
Sbjct: 164 NSDMQILTASGDGTCALWDVESGQLLQS-FHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 106 YTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152
+D R C+ T+E+ +S+ + +G+ + YD+R
Sbjct: 223 MVWD---MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 44 DYSRNSRHL-----LVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA-GISFSSDDKIIA 97
+Y R+ + L L+ G+ TL +WD +P++ SAP ++ S D K+
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 98 SVGLDKKLYTYD 109
S D + +D
Sbjct: 158 SCCSDGNIAVWD 169
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 58 DDGTLHLWDTTG-RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR 113
++ +H+++ +G + +V LK+H+ GI ++ D I + G D+ Y + R
Sbjct: 28 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGR 84
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 58 DDGTLHLWDTTG-RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR 113
++ +H+++ +G + +V LK+H+ G+ ++ D I + G D+ Y + R
Sbjct: 28 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 21/154 (13%)
Query: 20 LHNLASGAKAAELKDPNEQVLRVL----DYSRNSRHL------LVTAGDDGTLHLWD-TT 68
+ NL+S A +D N V RVL Y+ + +++ L+T D T LWD TT
Sbjct: 134 IFNLSSQAD----RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT 189
Query: 69 GRSPKVSWLKQHSAPTAGI------SFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE 122
G+ + + S TA + S +++ I S +L+ SR + +E
Sbjct: 190 GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE 249
Query: 123 APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156
+S+ F D G+ +G +D+R Q
Sbjct: 250 GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,569,355
Number of Sequences: 62578
Number of extensions: 629138
Number of successful extensions: 1105
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 132
length of query: 633
length of database: 14,973,337
effective HSP length: 105
effective length of query: 528
effective length of database: 8,402,647
effective search space: 4436597616
effective search space used: 4436597616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)