Query 006743
Match_columns 633
No_of_seqs 559 out of 3019
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 13:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4378 Nuclear protein COP1 [ 100.0 2.7E-65 5.9E-70 539.2 29.7 529 1-633 128-659 (673)
2 KOG0271 Notchless-like WD40 re 100.0 3.1E-27 6.8E-32 245.2 19.4 282 1-344 122-440 (480)
3 KOG0272 U4/U6 small nuclear ri 99.9 4.4E-27 9.5E-32 246.7 16.0 198 1-215 182-381 (459)
4 KOG0272 U4/U6 small nuclear ri 99.9 1.1E-26 2.4E-31 243.7 14.3 189 1-207 268-458 (459)
5 KOG0263 Transcription initiati 99.9 2.9E-26 6.4E-31 255.2 18.2 195 1-213 458-653 (707)
6 KOG0279 G protein beta subunit 99.9 1E-24 2.2E-29 219.5 22.2 189 2-210 71-263 (315)
7 KOG0271 Notchless-like WD40 re 99.9 2.2E-25 4.9E-30 231.5 16.6 207 1-212 164-442 (480)
8 KOG0266 WD40 repeat-containing 99.9 1.4E-23 3.1E-28 232.8 24.1 201 1-217 166-372 (456)
9 KOG0285 Pleiotropic regulator 99.9 7.4E-23 1.6E-27 211.4 18.4 204 1-210 158-390 (460)
10 KOG0279 G protein beta subunit 99.9 2.6E-22 5.6E-27 202.3 21.8 190 6-213 28-226 (315)
11 KOG0284 Polyadenylation factor 99.9 5.5E-24 1.2E-28 222.7 10.2 192 1-209 145-337 (464)
12 KOG0286 G-protein beta subunit 99.9 2.7E-22 5.9E-27 203.1 21.7 200 1-217 104-311 (343)
13 KOG0265 U5 snRNP-specific prot 99.9 9.7E-23 2.1E-27 206.9 18.3 198 1-216 54-253 (338)
14 KOG0263 Transcription initiati 99.9 9.4E-23 2E-27 227.4 18.3 197 1-215 385-613 (707)
15 KOG0286 G-protein beta subunit 99.9 4.8E-22 1E-26 201.3 21.4 186 5-207 155-343 (343)
16 KOG0273 Beta-transducin family 99.9 3.2E-22 6.8E-27 212.6 20.8 199 1-217 242-490 (524)
17 KOG0266 WD40 repeat-containing 99.9 9E-22 2E-26 218.4 24.2 198 1-213 210-413 (456)
18 KOG0291 WD40-repeat-containing 99.9 6.1E-22 1.3E-26 219.3 22.4 287 1-344 314-613 (893)
19 PTZ00421 coronin; Provisional 99.9 2.8E-21 6.1E-26 216.0 27.9 197 1-211 82-292 (493)
20 KOG0315 G-protein beta subunit 99.9 9.2E-22 2E-26 195.7 20.9 200 7-211 11-247 (311)
21 KOG0284 Polyadenylation factor 99.9 4.6E-23 1E-27 215.8 11.7 193 1-212 103-297 (464)
22 KOG0315 G-protein beta subunit 99.9 1.6E-21 3.4E-26 194.1 21.1 196 2-214 91-293 (311)
23 KOG0277 Peroxisomal targeting 99.9 4.5E-22 9.8E-27 198.3 16.7 194 1-209 67-265 (311)
24 KOG0295 WD40 repeat-containing 99.9 1.1E-21 2.4E-26 203.2 19.6 189 2-208 201-405 (406)
25 KOG1272 WD40-repeat-containing 99.9 3.5E-23 7.7E-28 219.4 7.8 252 2-290 137-396 (545)
26 KOG0276 Vesicle coat complex C 99.9 1.1E-21 2.4E-26 213.6 19.0 197 3-216 64-264 (794)
27 KOG0283 WD40 repeat-containing 99.9 1.3E-21 2.9E-26 219.6 19.9 191 2-209 275-532 (712)
28 cd00200 WD40 WD40 domain, foun 99.9 1.8E-20 3.9E-25 183.8 25.7 192 1-210 16-208 (289)
29 KOG0316 Conserved WD40 repeat- 99.9 2.9E-21 6.4E-26 190.8 19.7 202 2-213 25-261 (307)
30 PLN00181 protein SPA1-RELATED; 99.9 8.5E-21 1.8E-25 223.7 27.3 192 1-210 490-691 (793)
31 KOG0291 WD40-repeat-containing 99.9 3.6E-21 7.7E-26 213.3 22.4 198 1-215 357-556 (893)
32 KOG0645 WD40 repeat protein [G 99.9 1E-20 2.2E-25 190.1 23.7 194 1-209 21-225 (312)
33 cd00200 WD40 WD40 domain, foun 99.9 1.7E-20 3.6E-25 184.1 24.7 188 2-207 101-289 (289)
34 KOG0310 Conserved WD40 repeat- 99.9 1E-21 2.2E-26 209.5 16.1 202 2-220 76-279 (487)
35 PTZ00420 coronin; Provisional 99.9 2.8E-20 6.1E-25 210.0 28.4 195 1-210 81-294 (568)
36 KOG0282 mRNA splicing factor [ 99.9 2.6E-21 5.6E-26 206.3 15.9 190 1-207 265-503 (503)
37 KOG0273 Beta-transducin family 99.9 1.5E-20 3.3E-25 199.8 21.6 189 2-209 284-523 (524)
38 PTZ00420 coronin; Provisional 99.9 5.6E-20 1.2E-24 207.6 27.0 188 12-210 50-249 (568)
39 KOG0269 WD40 repeat-containing 99.9 5.8E-21 1.3E-25 212.3 17.3 200 5-220 99-308 (839)
40 PTZ00421 coronin; Provisional 99.9 1E-19 2.2E-24 203.4 27.5 197 3-212 29-248 (493)
41 KOG0318 WD40 repeat stress pro 99.9 8.9E-20 1.9E-24 196.1 24.7 182 2-185 198-505 (603)
42 PLN00181 protein SPA1-RELATED; 99.9 1.4E-19 3.1E-24 213.4 28.8 190 2-209 540-738 (793)
43 KOG0281 Beta-TrCP (transducin 99.9 1.4E-21 3.1E-26 201.2 10.1 182 4-210 245-429 (499)
44 KOG0295 WD40 repeat-containing 99.9 8E-21 1.7E-25 196.9 15.2 199 1-217 157-372 (406)
45 KOG0305 Anaphase promoting com 99.8 6.5E-20 1.4E-24 201.2 19.6 204 1-211 224-463 (484)
46 KOG0313 Microtubule binding pr 99.8 7E-20 1.5E-24 190.8 18.7 192 7-212 160-379 (423)
47 KOG0277 Peroxisomal targeting 99.8 8.6E-20 1.9E-24 182.2 18.3 186 14-213 36-225 (311)
48 KOG0282 mRNA splicing factor [ 99.8 1.6E-20 3.5E-25 200.2 13.7 206 2-213 222-466 (503)
49 KOG0292 Vesicle coat complex C 99.8 7.8E-20 1.7E-24 205.1 19.4 199 1-215 58-286 (1202)
50 KOG0275 Conserved WD40 repeat- 99.8 7.9E-21 1.7E-25 194.2 10.4 175 2-178 221-403 (508)
51 KOG0264 Nucleosome remodeling 99.8 1.2E-19 2.7E-24 192.5 19.4 196 2-209 185-404 (422)
52 KOG0264 Nucleosome remodeling 99.8 9.1E-20 2E-24 193.5 18.3 192 7-212 138-350 (422)
53 KOG0285 Pleiotropic regulator 99.8 5.4E-20 1.2E-24 190.4 14.9 166 30-213 145-311 (460)
54 KOG0319 WD40-repeat-containing 99.8 1.3E-19 2.8E-24 200.9 18.3 200 4-219 375-587 (775)
55 KOG0293 WD40 repeat-containing 99.8 1.1E-19 2.4E-24 190.7 15.4 194 1-211 276-515 (519)
56 KOG0645 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 175.5 21.9 195 1-208 68-310 (312)
57 KOG0318 WD40 repeat stress pro 99.8 9.5E-19 2.1E-23 188.2 22.6 194 2-210 67-351 (603)
58 KOG0276 Vesicle coat complex C 99.8 3.9E-19 8.5E-24 193.9 19.6 202 2-219 21-225 (794)
59 KOG0302 Ribosome Assembly prot 99.8 2.9E-19 6.2E-24 186.1 17.4 191 6-210 165-379 (440)
60 KOG0772 Uncharacterized conser 99.8 2.3E-19 5E-24 192.4 16.8 201 1-214 174-399 (641)
61 KOG0292 Vesicle coat complex C 99.8 3E-19 6.4E-24 200.5 17.9 197 1-212 16-239 (1202)
62 KOG0319 WD40-repeat-containing 99.8 2.2E-19 4.7E-24 199.1 16.6 184 7-207 425-617 (775)
63 KOG1446 Histone H3 (Lys4) meth 99.8 7.5E-18 1.6E-22 172.7 25.8 211 1-215 21-268 (311)
64 KOG0293 WD40 repeat-containing 99.8 1.3E-18 2.8E-23 182.8 18.3 213 1-219 231-480 (519)
65 KOG0646 WD40 repeat protein [G 99.8 2.4E-18 5.2E-23 183.2 20.2 197 3-213 90-311 (476)
66 KOG0296 Angio-associated migra 99.8 5.2E-18 1.1E-22 176.2 22.2 189 1-208 113-397 (399)
67 KOG0640 mRNA cleavage stimulat 99.8 4.5E-19 9.8E-24 180.8 14.0 201 1-217 119-343 (430)
68 KOG0265 U5 snRNP-specific prot 99.8 1.3E-18 2.8E-23 177.0 17.1 194 2-210 98-297 (338)
69 KOG0278 Serine/threonine kinas 99.8 1.2E-19 2.6E-24 180.7 9.2 193 4-213 69-301 (334)
70 KOG0643 Translation initiation 99.8 5.2E-18 1.1E-22 170.5 20.5 201 2-220 18-231 (327)
71 KOG0281 Beta-TrCP (transducin 99.8 2E-19 4.4E-24 185.4 10.7 183 4-212 205-391 (499)
72 KOG0289 mRNA splicing factor [ 99.8 2.7E-18 5.9E-23 181.3 19.1 196 6-219 231-429 (506)
73 KOG1036 Mitotic spindle checkp 99.8 6.8E-18 1.5E-22 172.4 21.1 239 2-252 21-302 (323)
74 KOG0772 Uncharacterized conser 99.8 7.9E-19 1.7E-23 188.3 14.6 210 1-217 221-453 (641)
75 KOG0647 mRNA export protein (c 99.8 6.3E-18 1.4E-22 172.2 19.4 193 1-210 34-282 (347)
76 KOG0274 Cdc4 and related F-box 99.8 1E-17 2.2E-22 188.6 22.6 192 6-220 218-412 (537)
77 KOG0274 Cdc4 and related F-box 99.8 4.4E-18 9.5E-23 191.5 19.7 191 5-219 260-451 (537)
78 KOG0313 Microtubule binding pr 99.8 7.8E-18 1.7E-22 175.6 19.6 188 3-210 202-419 (423)
79 KOG0269 WD40 repeat-containing 99.8 1.6E-18 3.6E-23 193.0 15.3 190 7-210 147-341 (839)
80 KOG0294 WD40 repeat-containing 99.8 1E-17 2.2E-22 171.5 19.5 194 3-212 50-284 (362)
81 KOG0270 WD40 repeat-containing 99.8 6.8E-18 1.5E-22 178.9 17.9 195 5-213 191-408 (463)
82 KOG0641 WD40 repeat protein [G 99.8 3.8E-17 8.2E-22 160.9 21.7 191 1-209 39-303 (350)
83 KOG0296 Angio-associated migra 99.8 2.4E-17 5.3E-22 171.3 21.3 196 2-204 72-268 (399)
84 KOG0308 Conserved WD40 repeat- 99.8 1.7E-18 3.7E-23 189.9 12.7 197 4-217 35-251 (735)
85 KOG0268 Sof1-like rRNA process 99.8 2.3E-18 5.1E-23 178.6 13.0 196 7-208 80-344 (433)
86 KOG0310 Conserved WD40 repeat- 99.8 4.6E-17 1E-21 174.2 22.2 177 2-185 118-297 (487)
87 KOG0267 Microtubule severing p 99.8 6.3E-19 1.4E-23 195.0 7.2 192 6-215 40-232 (825)
88 KOG0283 WD40 repeat-containing 99.7 5.5E-17 1.2E-21 182.7 20.8 193 2-212 377-579 (712)
89 KOG0973 Histone transcription 99.7 5.3E-17 1.1E-21 186.8 20.5 150 2-153 21-202 (942)
90 KOG0300 WD40 repeat-containing 99.7 1.3E-17 2.9E-22 170.4 13.9 189 8-213 162-390 (481)
91 KOG0306 WD40-repeat-containing 99.7 5E-17 1.1E-21 180.6 19.6 191 2-209 462-664 (888)
92 KOG0289 mRNA splicing factor [ 99.7 1E-16 2.2E-21 169.6 20.9 191 2-207 311-504 (506)
93 KOG0308 Conserved WD40 repeat- 99.7 5.6E-17 1.2E-21 178.1 18.7 192 3-211 82-287 (735)
94 KOG1407 WD40 repeat protein [F 99.7 1.1E-16 2.5E-21 160.5 19.0 196 1-214 27-224 (313)
95 KOG0639 Transducin-like enhanc 99.7 1.5E-17 3.3E-22 177.9 13.3 177 2-185 473-651 (705)
96 KOG1332 Vesicle coat complex C 99.7 4.3E-17 9.3E-22 162.3 14.9 195 3-209 20-241 (299)
97 KOG1407 WD40 repeat protein [F 99.7 3.3E-16 7.2E-21 157.1 20.3 194 5-208 76-310 (313)
98 KOG0299 U3 snoRNP-associated p 99.7 8E-17 1.7E-21 171.4 16.6 192 1-210 209-411 (479)
99 KOG4283 Transcription-coupled 99.7 9.2E-17 2E-21 163.2 16.2 191 5-209 55-276 (397)
100 KOG0275 Conserved WD40 repeat- 99.7 9E-18 1.9E-22 172.0 8.4 190 1-207 270-507 (508)
101 KOG0305 Anaphase promoting com 99.7 2.3E-16 4.9E-21 173.5 19.4 194 2-215 185-382 (484)
102 KOG0306 WD40-repeat-containing 99.7 1.5E-16 3.3E-21 176.9 17.8 199 2-217 420-630 (888)
103 KOG0973 Histone transcription 99.7 2.4E-16 5.3E-21 181.4 20.0 191 2-209 77-355 (942)
104 KOG0288 WD40 repeat protein Ti 99.7 7.3E-17 1.6E-21 169.8 14.3 188 2-206 227-458 (459)
105 KOG0302 Ribosome Assembly prot 99.7 1.1E-16 2.5E-21 166.9 15.5 177 2-179 219-420 (440)
106 KOG0267 Microtubule severing p 99.7 1.1E-17 2.4E-22 185.2 7.7 178 2-185 78-256 (825)
107 KOG0640 mRNA cleavage stimulat 99.7 1.4E-16 3E-21 162.8 15.1 151 1-154 179-337 (430)
108 KOG0316 Conserved WD40 repeat- 99.7 3E-16 6.6E-21 155.5 15.8 161 35-213 15-177 (307)
109 KOG1408 WD40 repeat protein [F 99.7 2.6E-16 5.6E-21 173.8 14.7 193 1-209 466-713 (1080)
110 KOG0643 Translation initiation 99.7 2.2E-15 4.8E-20 151.7 20.1 148 4-154 62-222 (327)
111 KOG0270 WD40 repeat-containing 99.7 1.4E-15 3E-20 161.5 19.6 194 7-214 257-454 (463)
112 KOG1445 Tumor-specific antigen 99.7 4.8E-16 1E-20 169.8 16.5 181 2-185 587-782 (1012)
113 KOG0288 WD40 repeat protein Ti 99.7 5.8E-17 1.3E-21 170.6 8.6 205 2-215 183-423 (459)
114 KOG0299 U3 snoRNP-associated p 99.7 6.6E-16 1.4E-20 164.5 16.0 200 1-219 149-366 (479)
115 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.6E-14 3.5E-19 146.9 25.1 188 6-212 1-190 (300)
116 KOG0647 mRNA export protein (c 99.7 1.5E-15 3.3E-20 155.0 16.8 163 30-210 20-185 (347)
117 KOG0307 Vesicle coat complex C 99.7 1.3E-16 2.7E-21 184.4 10.1 196 1-210 71-285 (1049)
118 KOG0641 WD40 repeat protein [G 99.7 1.6E-14 3.5E-19 142.5 21.7 191 1-208 96-348 (350)
119 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 3.7E-14 8.1E-19 144.2 25.3 195 1-211 37-239 (300)
120 KOG2096 WD40 repeat protein [G 99.7 3.8E-15 8.1E-20 152.9 17.5 193 1-209 93-308 (420)
121 KOG1274 WD40 repeat protein [G 99.6 6.2E-15 1.3E-19 167.3 20.6 191 3-209 63-262 (933)
122 KOG0300 WD40 repeat-containing 99.6 4.7E-15 1E-19 152.0 16.5 194 2-209 280-476 (481)
123 KOG2445 Nuclear pore complex c 99.6 2.8E-14 6.1E-19 146.1 20.5 199 1-210 20-257 (361)
124 KOG0303 Actin-binding protein 99.6 7.9E-15 1.7E-19 154.0 16.4 169 34-214 78-254 (472)
125 KOG1332 Vesicle coat complex C 99.6 6E-15 1.3E-19 147.1 14.7 190 5-207 69-284 (299)
126 KOG1446 Histone H3 (Lys4) meth 99.6 4.1E-14 8.8E-19 145.4 20.8 175 2-182 108-290 (311)
127 KOG1273 WD40 repeat protein [G 99.6 1.3E-14 2.8E-19 148.9 16.9 204 1-206 30-288 (405)
128 KOG0303 Actin-binding protein 99.6 2.5E-14 5.4E-19 150.2 19.0 198 1-213 88-298 (472)
129 KOG0301 Phospholipase A2-activ 99.6 7.7E-15 1.7E-19 162.5 16.0 179 5-209 70-249 (745)
130 KOG1539 WD repeat protein [Gen 99.6 1.8E-14 3.9E-19 162.1 17.9 178 2-186 456-636 (910)
131 KOG0321 WD40 repeat-containing 99.6 3.2E-14 7E-19 156.4 18.7 234 6-252 64-354 (720)
132 KOG2394 WD40 protein DMR-N9 [G 99.6 1.6E-14 3.5E-19 156.2 16.1 171 4-177 183-384 (636)
133 KOG4378 Nuclear protein COP1 [ 99.6 1.6E-14 3.6E-19 154.8 15.7 189 6-213 91-284 (673)
134 KOG1274 WD40 repeat protein [G 99.6 4E-14 8.6E-19 160.8 19.0 173 1-183 103-286 (933)
135 KOG1034 Transcriptional repres 99.6 3E-14 6.5E-19 146.9 16.1 190 7-209 106-383 (385)
136 KOG0278 Serine/threonine kinas 99.6 3.8E-15 8.1E-20 148.8 9.0 197 3-220 26-224 (334)
137 KOG4283 Transcription-coupled 99.6 2.7E-14 5.9E-19 145.4 15.1 166 32-211 38-221 (397)
138 KOG2055 WD40 repeat protein [G 99.6 8.1E-14 1.7E-18 148.8 19.1 191 2-209 221-417 (514)
139 KOG1188 WD40 repeat protein [G 99.6 4.7E-14 1E-18 146.1 16.4 195 7-213 41-246 (376)
140 KOG2048 WD40 repeat protein [G 99.6 3.3E-13 7.1E-18 149.5 23.4 194 1-211 32-235 (691)
141 KOG4328 WD40 protein [Function 99.6 3.5E-14 7.5E-19 151.4 14.8 196 1-209 193-399 (498)
142 KOG2096 WD40 repeat protein [G 99.6 4.2E-14 9.1E-19 145.3 14.8 175 5-185 198-391 (420)
143 KOG0301 Phospholipase A2-activ 99.6 6.9E-14 1.5E-18 155.0 17.4 175 8-210 114-289 (745)
144 KOG1273 WD40 repeat protein [G 99.5 8.7E-14 1.9E-18 142.9 15.9 157 40-212 26-229 (405)
145 KOG0294 WD40 repeat-containing 99.5 4.7E-13 1E-17 137.6 21.0 167 8-183 3-184 (362)
146 KOG0321 WD40 repeat-containing 99.5 8E-14 1.7E-18 153.3 15.9 196 2-210 108-348 (720)
147 KOG2055 WD40 repeat protein [G 99.5 9.6E-14 2.1E-18 148.2 16.0 182 1-187 264-455 (514)
148 KOG1009 Chromatin assembly com 99.5 7.8E-14 1.7E-18 147.0 15.0 149 34-185 10-183 (434)
149 KOG0639 Transducin-like enhanc 99.5 4.6E-14 1E-18 151.5 13.4 188 1-208 516-703 (705)
150 KOG1007 WD repeat protein TSSC 99.5 6.6E-14 1.4E-18 142.4 13.7 152 1-153 177-362 (370)
151 KOG1007 WD repeat protein TSSC 99.5 1.1E-13 2.5E-18 140.7 14.9 176 17-208 94-288 (370)
152 KOG1036 Mitotic spindle checkp 99.5 2E-13 4.4E-18 139.9 16.9 161 31-213 7-167 (323)
153 KOG0290 Conserved WD40 repeat- 99.5 9.7E-14 2.1E-18 141.3 14.2 188 8-210 115-319 (364)
154 KOG0771 Prolactin regulatory e 99.5 1.1E-13 2.4E-18 146.5 14.8 202 1-208 151-364 (398)
155 KOG0307 Vesicle coat complex C 99.5 2.9E-14 6.3E-19 165.1 10.6 193 2-209 124-327 (1049)
156 KOG1063 RNA polymerase II elon 99.5 2E-13 4.4E-18 151.3 16.5 203 2-208 533-762 (764)
157 COG2319 FOG: WD40 repeat [Gene 99.5 3.6E-12 7.7E-17 130.0 24.3 192 3-212 119-317 (466)
158 KOG1408 WD40 repeat protein [F 99.5 4.5E-13 9.8E-18 148.5 17.6 176 2-179 332-559 (1080)
159 KOG2919 Guanine nucleotide-bin 99.5 4E-13 8.6E-18 138.5 15.7 196 4-213 121-331 (406)
160 KOG0646 WD40 repeat protein [G 99.5 5.4E-13 1.2E-17 142.7 16.8 170 2-177 131-329 (476)
161 KOG0650 WD40 repeat nucleolar 99.5 2.6E-13 5.6E-18 148.4 14.7 190 3-208 409-679 (733)
162 KOG0268 Sof1-like rRNA process 99.5 7.2E-14 1.6E-18 145.5 9.3 150 2-154 195-347 (433)
163 KOG0649 WD40 repeat protein [G 99.5 2.2E-12 4.8E-17 128.8 18.9 205 1-219 17-245 (325)
164 KOG1009 Chromatin assembly com 99.5 4.1E-13 9E-18 141.6 14.0 151 2-153 21-196 (434)
165 KOG2106 Uncharacterized conser 99.5 6.2E-12 1.3E-16 135.6 22.1 174 1-185 253-465 (626)
166 COG2319 FOG: WD40 repeat [Gene 99.5 1.9E-11 4.1E-16 124.7 24.9 197 2-213 73-275 (466)
167 KOG4328 WD40 protein [Function 99.5 7.1E-13 1.5E-17 141.5 14.0 175 28-216 178-360 (498)
168 KOG2048 WD40 repeat protein [G 99.4 4E-12 8.6E-17 141.0 20.2 178 1-185 76-263 (691)
169 KOG2919 Guanine nucleotide-bin 99.4 1.8E-12 3.9E-17 133.6 16.4 181 1-185 165-358 (406)
170 KOG2445 Nuclear pore complex c 99.4 1.1E-11 2.3E-16 127.4 21.0 191 5-209 72-318 (361)
171 KOG0642 Cell-cycle nuclear pro 99.4 2.8E-12 6.1E-17 139.9 17.6 195 1-212 301-564 (577)
172 KOG4227 WD40 repeat protein [G 99.4 4.6E-12 1E-16 133.0 18.3 153 2-157 64-230 (609)
173 PRK04922 tolB translocation pr 99.4 2.7E-11 5.9E-16 133.8 25.3 178 1-187 210-398 (433)
174 PF08662 eIF2A: Eukaryotic tra 99.4 8E-12 1.7E-16 123.9 18.6 148 2-154 13-181 (194)
175 KOG2106 Uncharacterized conser 99.4 1.6E-11 3.4E-16 132.5 21.9 198 1-209 207-477 (626)
176 KOG2139 WD40 repeat protein [G 99.4 6.2E-12 1.3E-16 131.3 18.2 194 1-202 105-313 (445)
177 PRK02889 tolB translocation pr 99.4 2.8E-11 6E-16 133.6 24.5 189 1-198 202-401 (427)
178 PF08662 eIF2A: Eukaryotic tra 99.4 1.1E-11 2.3E-16 122.9 19.1 153 43-208 11-178 (194)
179 KOG1310 WD40 repeat protein [G 99.4 2.1E-12 4.5E-17 140.2 14.0 152 1-152 57-231 (758)
180 KOG1524 WD40 repeat-containing 99.4 2.7E-12 5.9E-17 139.0 14.6 189 7-205 76-282 (737)
181 KOG1538 Uncharacterized conser 99.4 2.5E-12 5.5E-17 141.7 14.4 169 1-178 19-187 (1081)
182 PRK03629 tolB translocation pr 99.4 5.7E-11 1.2E-15 131.3 24.8 178 1-187 205-393 (429)
183 KOG1539 WD repeat protein [Gen 99.4 2.3E-11 4.9E-16 137.5 21.2 186 4-206 122-315 (910)
184 KOG1445 Tumor-specific antigen 99.4 4.8E-12 1E-16 139.0 15.0 198 2-213 635-848 (1012)
185 TIGR02800 propeller_TolB tol-p 99.4 1.1E-10 2.4E-15 127.0 25.8 181 1-190 196-387 (417)
186 PRK05137 tolB translocation pr 99.4 8.8E-11 1.9E-15 129.7 24.8 176 1-185 208-394 (435)
187 KOG1524 WD40 repeat-containing 99.4 9.1E-12 2E-16 135.0 16.1 177 2-201 112-288 (737)
188 KOG0290 Conserved WD40 repeat- 99.4 1.2E-11 2.6E-16 126.2 16.1 181 5-185 162-354 (364)
189 PRK11028 6-phosphogluconolacto 99.4 1.6E-10 3.5E-15 122.3 25.2 196 1-210 41-259 (330)
190 PRK01742 tolB translocation pr 99.4 4.4E-11 9.5E-16 132.0 21.6 171 1-185 210-389 (429)
191 PRK11028 6-phosphogluconolacto 99.4 6.6E-11 1.4E-15 125.3 22.2 195 1-209 86-304 (330)
192 KOG1034 Transcriptional repres 99.4 6.7E-12 1.4E-16 129.8 13.2 144 8-153 57-212 (385)
193 KOG1517 Guanine nucleotide bin 99.3 1.4E-11 3.1E-16 141.6 16.5 194 2-208 1173-1380(1387)
194 KOG1188 WD40 repeat protein [G 99.3 8.4E-12 1.8E-16 129.6 12.9 148 51-211 41-198 (376)
195 KOG1523 Actin-related protein 99.3 1.9E-11 4.2E-16 126.1 15.2 194 1-208 17-235 (361)
196 KOG2110 Uncharacterized conser 99.3 1.3E-10 2.8E-15 121.9 21.4 183 8-210 58-249 (391)
197 KOG1063 RNA polymerase II elon 99.3 2.5E-11 5.4E-16 135.0 17.0 196 2-210 324-649 (764)
198 KOG1517 Guanine nucleotide bin 99.3 9.4E-11 2E-15 135.0 19.5 197 2-211 1072-1289(1387)
199 KOG1587 Cytoplasmic dynein int 99.3 7.5E-11 1.6E-15 133.1 18.3 199 2-213 250-476 (555)
200 KOG4227 WD40 repeat protein [G 99.3 7E-11 1.5E-15 124.2 16.1 166 35-212 54-228 (609)
201 KOG0322 G-protein beta subunit 99.3 1.7E-11 3.8E-16 123.7 11.0 142 52-208 167-322 (323)
202 KOG0650 WD40 repeat nucleolar 99.3 2.8E-11 6E-16 132.8 12.8 188 1-206 528-732 (733)
203 KOG2110 Uncharacterized conser 99.3 1.4E-10 3E-15 121.6 17.2 145 6-153 97-249 (391)
204 PRK00178 tolB translocation pr 99.3 1.1E-09 2.5E-14 120.4 25.1 178 1-187 205-393 (430)
205 KOG3881 Uncharacterized conser 99.2 2.4E-10 5.1E-15 120.6 17.9 197 6-219 115-330 (412)
206 PRK04792 tolB translocation pr 99.2 1.5E-09 3.3E-14 120.7 25.0 176 1-185 224-410 (448)
207 PRK01742 tolB translocation pr 99.2 2.4E-10 5.3E-15 126.1 16.9 169 1-178 254-426 (429)
208 KOG1310 WD40 repeat protein [G 99.2 4.1E-11 9E-16 130.3 10.0 171 30-213 44-235 (758)
209 KOG0644 Uncharacterized conser 99.2 1.4E-11 3.1E-16 138.8 6.6 193 1-214 197-431 (1113)
210 KOG1523 Actin-related protein 99.2 2.2E-10 4.9E-15 118.3 13.8 157 37-206 10-173 (361)
211 KOG2111 Uncharacterized conser 99.2 5E-09 1.1E-13 108.4 22.5 147 6-154 104-258 (346)
212 KOG2111 Uncharacterized conser 99.2 9.8E-09 2.1E-13 106.3 23.7 179 16-213 75-260 (346)
213 KOG0649 WD40 repeat protein [G 99.1 3.9E-09 8.4E-14 105.9 20.0 143 3-154 123-276 (325)
214 PRK05137 tolB translocation pr 99.1 8.7E-09 1.9E-13 113.9 24.8 161 17-185 183-351 (435)
215 PRK03629 tolB translocation pr 99.1 2.1E-09 4.6E-14 118.9 18.6 168 1-177 249-427 (429)
216 KOG0974 WD-repeat protein WDR6 99.1 1.9E-09 4.1E-14 124.8 18.4 188 5-212 98-291 (967)
217 KOG1272 WD40-repeat-containing 99.1 1.9E-10 4.1E-15 123.5 9.3 208 2-214 217-426 (545)
218 KOG4547 WD40 repeat-containing 99.1 5.3E-09 1.1E-13 115.3 20.8 199 3-213 2-224 (541)
219 KOG0322 G-protein beta subunit 99.1 4.1E-10 8.8E-15 113.9 11.1 143 8-151 167-322 (323)
220 KOG3881 Uncharacterized conser 99.1 1.8E-09 4E-14 114.0 15.3 166 8-177 163-341 (412)
221 KOG1538 Uncharacterized conser 99.1 4.4E-09 9.5E-14 116.7 18.6 192 1-209 60-293 (1081)
222 KOG4497 Uncharacterized conser 99.1 2.8E-10 6.1E-15 117.9 8.5 138 1-142 15-153 (447)
223 PRK04922 tolB translocation pr 99.1 6.4E-09 1.4E-13 115.0 19.7 168 1-177 254-432 (433)
224 KOG2321 WD40 repeat protein [G 99.1 3.7E-09 8.1E-14 116.0 16.8 197 2-213 59-306 (703)
225 KOG1963 WD40 repeat protein [G 99.1 6.9E-09 1.5E-13 118.5 19.5 182 1-185 212-416 (792)
226 KOG1587 Cytoplasmic dynein int 99.1 2.9E-09 6.3E-14 120.4 16.4 188 7-209 306-516 (555)
227 KOG1240 Protein kinase contain 99.1 7.3E-09 1.6E-13 121.4 19.8 196 4-211 1059-1275(1431)
228 KOG2394 WD40 protein DMR-N9 [G 99.0 1.7E-09 3.6E-14 117.9 12.9 93 38-132 291-384 (636)
229 PRK01029 tolB translocation pr 99.0 4.9E-08 1.1E-12 108.2 24.1 179 1-185 191-388 (428)
230 KOG1334 WD40 repeat protein [G 99.0 1.3E-09 2.8E-14 117.7 11.0 183 2-184 150-353 (559)
231 KOG0771 Prolactin regulatory e 99.0 1.3E-09 2.9E-14 115.9 10.9 154 41-209 148-311 (398)
232 TIGR02800 propeller_TolB tol-p 99.0 5.8E-08 1.3E-12 105.7 24.2 160 17-185 171-339 (417)
233 PRK02889 tolB translocation pr 99.0 3.4E-08 7.3E-13 109.2 22.0 177 16-209 176-360 (427)
234 PRK04043 tolB translocation pr 99.0 1.1E-07 2.3E-12 105.2 26.0 191 1-202 194-402 (419)
235 PRK01029 tolB translocation pr 99.0 2.5E-08 5.3E-13 110.5 20.9 174 1-178 237-425 (428)
236 KOG2139 WD40 repeat protein [G 99.0 2.8E-08 6.1E-13 104.4 18.1 206 1-214 147-388 (445)
237 PF02239 Cytochrom_D1: Cytochr 99.0 1.9E-07 4E-12 101.7 24.8 196 7-208 6-212 (369)
238 KOG0642 Cell-cycle nuclear pro 98.9 4.4E-09 9.6E-14 115.3 12.0 119 35-154 292-428 (577)
239 KOG0974 WD-repeat protein WDR6 98.9 8E-09 1.7E-13 119.7 13.2 148 3-154 142-290 (967)
240 KOG0644 Uncharacterized conser 98.9 5.7E-10 1.2E-14 126.2 3.5 116 75-209 184-300 (1113)
241 PRK00178 tolB translocation pr 98.9 3.5E-07 7.5E-12 100.7 24.5 161 17-185 180-348 (430)
242 KOG2321 WD40 repeat protein [G 98.9 3.4E-08 7.4E-13 108.6 16.0 166 9-181 148-327 (703)
243 PRK04792 tolB translocation pr 98.9 2.5E-07 5.4E-12 103.1 23.2 161 17-185 199-367 (448)
244 KOG0280 Uncharacterized conser 98.9 2.3E-08 5E-13 102.7 13.5 182 2-185 129-319 (339)
245 KOG1064 RAVE (regulator of V-A 98.9 5.3E-09 1.1E-13 125.9 10.2 185 3-217 2217-2406(2439)
246 KOG1963 WD40 repeat protein [G 98.9 9.1E-08 2E-12 109.5 19.2 150 2-153 168-323 (792)
247 KOG1240 Protein kinase contain 98.9 3E-08 6.5E-13 116.4 15.1 182 21-217 1034-1233(1431)
248 PF10282 Lactonase: Lactonase, 98.8 4.8E-06 1E-10 89.5 28.7 198 1-209 93-322 (345)
249 KOG0280 Uncharacterized conser 98.8 1.4E-07 3E-12 97.1 15.3 167 8-178 87-264 (339)
250 PF02239 Cytochrom_D1: Cytochr 98.8 1.3E-06 2.8E-11 95.2 23.5 209 1-217 43-265 (369)
251 KOG2315 Predicted translation 98.8 3E-07 6.5E-12 101.2 18.3 179 13-209 191-390 (566)
252 KOG1354 Serine/threonine prote 98.7 1.9E-07 4.2E-12 97.7 15.5 197 2-212 33-304 (433)
253 PF10282 Lactonase: Lactonase, 98.7 7E-06 1.5E-10 88.3 27.4 197 1-209 43-275 (345)
254 KOG4532 WD40-like repeat conta 98.7 8E-07 1.7E-11 90.6 18.4 198 5-213 83-286 (344)
255 COG4946 Uncharacterized protei 98.7 2.8E-06 6.1E-11 92.1 21.6 170 5-185 331-506 (668)
256 PLN02919 haloacid dehalogenase 98.7 4.7E-06 1E-10 101.8 26.0 194 1-211 630-890 (1057)
257 KOG1064 RAVE (regulator of V-A 98.6 6.3E-08 1.4E-12 117.0 9.2 176 1-201 2258-2438(2439)
258 KOG4497 Uncharacterized conser 98.6 6.8E-07 1.5E-11 93.2 15.4 148 2-152 56-240 (447)
259 COG2706 3-carboxymuconate cycl 98.6 2.2E-05 4.8E-10 83.1 25.3 189 1-190 46-266 (346)
260 KOG4547 WD40 repeat-containing 98.6 4.8E-06 1E-10 92.4 20.6 143 7-153 71-221 (541)
261 KOG3914 WD repeat protein WDR4 98.6 6.1E-07 1.3E-11 95.6 13.1 150 2-157 70-228 (390)
262 KOG0309 Conserved WD40 repeat- 98.5 2.7E-07 5.9E-12 103.8 9.5 202 2-209 122-339 (1081)
263 KOG3914 WD repeat protein WDR4 98.5 1.5E-06 3.2E-11 92.7 13.1 163 42-220 67-234 (390)
264 KOG1275 PAB-dependent poly(A) 98.5 4.1E-06 8.9E-11 96.6 17.1 187 5-210 146-343 (1118)
265 KOG0309 Conserved WD40 repeat- 98.5 6.7E-07 1.5E-11 100.8 10.3 198 2-213 32-236 (1081)
266 COG5354 Uncharacterized protei 98.4 8.2E-06 1.8E-10 89.3 17.5 183 12-209 198-395 (561)
267 KOG1334 WD40 repeat protein [G 98.4 7.5E-07 1.6E-11 96.7 9.4 167 35-213 140-316 (559)
268 PLN02919 haloacid dehalogenase 98.4 1.8E-05 3.9E-10 96.9 22.0 154 1-155 689-891 (1057)
269 KOG1354 Serine/threonine prote 98.4 2.5E-06 5.4E-11 89.6 12.3 199 7-208 99-358 (433)
270 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00015 3.2E-09 78.5 26.2 196 2-213 53-334 (352)
271 COG4946 Uncharacterized protei 98.4 4.1E-05 8.9E-10 83.3 21.3 190 3-210 275-478 (668)
272 KOG1409 Uncharacterized conser 98.4 2.3E-06 5E-11 89.8 10.9 102 10-113 169-272 (404)
273 KOG2315 Predicted translation 98.4 1.5E-05 3.2E-10 88.2 17.5 149 17-177 252-410 (566)
274 COG0823 TolB Periplasmic compo 98.4 1.5E-05 3.4E-10 88.3 17.9 197 1-205 199-407 (425)
275 KOG4190 Uncharacterized conser 98.3 1.2E-06 2.7E-11 95.9 7.1 175 29-208 728-916 (1034)
276 PRK04043 tolB translocation pr 98.3 0.00028 6E-09 78.3 25.6 160 16-186 169-337 (419)
277 KOG4714 Nucleoporin [Nuclear s 98.3 2E-06 4.3E-11 87.5 7.7 75 38-112 180-255 (319)
278 KOG2695 WD40 repeat protein [G 98.3 2.3E-06 5.1E-11 89.8 8.3 162 10-177 228-402 (425)
279 PF08450 SGL: SMP-30/Gluconola 98.2 0.00031 6.7E-09 71.5 22.9 177 1-185 6-201 (246)
280 COG5170 CDC55 Serine/threonine 98.2 1.1E-05 2.4E-10 83.8 11.9 198 2-213 34-313 (460)
281 KOG4532 WD40-like repeat conta 98.2 4.2E-05 9.1E-10 78.3 15.8 156 52-219 86-243 (344)
282 KOG4714 Nucleoporin [Nuclear s 98.2 2.3E-06 4.9E-11 87.1 6.6 145 52-209 103-254 (319)
283 COG2706 3-carboxymuconate cycl 98.2 0.00084 1.8E-08 71.4 25.9 189 1-191 95-314 (346)
284 KOG1409 Uncharacterized conser 98.2 3.9E-05 8.4E-10 80.8 15.3 191 5-212 35-230 (404)
285 PF15492 Nbas_N: Neuroblastoma 98.1 0.00017 3.6E-09 74.7 18.8 153 1-154 50-261 (282)
286 KOG2041 WD40 repeat protein [G 98.1 1.7E-05 3.7E-10 89.5 10.9 151 1-153 21-187 (1189)
287 PF15492 Nbas_N: Neuroblastoma 98.1 0.00087 1.9E-08 69.5 22.6 195 2-210 5-260 (282)
288 PF11768 DUF3312: Protein of u 98.1 0.00021 4.4E-09 80.1 19.2 139 38-178 207-368 (545)
289 PF08450 SGL: SMP-30/Gluconola 98.1 0.0011 2.4E-08 67.4 23.1 162 6-176 51-233 (246)
290 PF04762 IKI3: IKI3 family; I 98.0 9E-05 2E-09 89.5 16.9 172 1-179 127-360 (928)
291 KOG2314 Translation initiation 98.0 0.00016 3.5E-09 80.1 16.9 196 2-210 257-526 (698)
292 KOG2041 WD40 repeat protein [G 98.0 2.3E-05 5.1E-10 88.4 10.7 146 35-185 12-174 (1189)
293 KOG1008 Uncharacterized conser 98.0 1.3E-06 2.8E-11 97.7 0.6 194 6-210 70-276 (783)
294 KOG2114 Vacuolar assembly/sort 98.0 0.00038 8.2E-09 80.6 20.1 181 1-185 30-232 (933)
295 KOG2695 WD40 repeat protein [G 98.0 1.5E-05 3.2E-10 84.0 8.0 154 44-210 218-377 (425)
296 PF00400 WD40: WD domain, G-be 98.0 2.1E-05 4.6E-10 56.8 6.2 36 74-109 4-39 (39)
297 COG5354 Uncharacterized protei 98.0 0.00049 1.1E-08 75.8 19.3 191 2-210 79-307 (561)
298 PF04762 IKI3: IKI3 family; I 98.0 0.00037 8.1E-09 84.3 20.0 190 2-198 83-333 (928)
299 KOG1832 HIV-1 Vpr-binding prot 98.0 3.1E-06 6.8E-11 97.0 2.1 186 1-217 1108-1299(1516)
300 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.0021 4.6E-08 69.7 23.7 142 5-152 11-175 (352)
301 KOG2066 Vacuolar assembly/sort 97.9 0.00035 7.5E-09 80.4 17.7 135 5-155 48-190 (846)
302 PF07433 DUF1513: Protein of u 97.9 0.0037 8.1E-08 66.2 23.8 196 2-212 12-250 (305)
303 PF13360 PQQ_2: PQQ-like domai 97.8 0.0025 5.4E-08 63.5 20.7 184 5-211 35-232 (238)
304 KOG4190 Uncharacterized conser 97.8 7.1E-05 1.5E-09 82.5 10.0 146 5-155 746-909 (1034)
305 KOG2066 Vacuolar assembly/sort 97.8 0.00085 1.8E-08 77.3 18.6 141 5-153 82-234 (846)
306 PF00400 WD40: WD domain, G-be 97.8 6.6E-05 1.4E-09 54.1 5.9 37 114-150 2-39 (39)
307 TIGR03300 assembly_YfgL outer 97.8 0.0027 5.9E-08 68.6 21.1 142 5-155 64-211 (377)
308 PF07433 DUF1513: Protein of u 97.8 0.006 1.3E-07 64.7 22.5 170 1-179 57-269 (305)
309 PF11768 DUF3312: Protein of u 97.7 0.00079 1.7E-08 75.6 16.4 132 62-210 186-330 (545)
310 PF13360 PQQ_2: PQQ-like domai 97.7 0.0022 4.8E-08 63.9 18.3 137 14-155 1-143 (238)
311 TIGR03300 assembly_YfgL outer 97.7 0.0032 7E-08 68.0 20.7 145 5-155 104-262 (377)
312 PRK02888 nitrous-oxide reducta 97.7 0.0046 1E-07 71.0 22.1 148 3-153 201-405 (635)
313 KOG1920 IkappaB kinase complex 97.7 0.0015 3.2E-08 78.3 18.5 179 2-184 76-306 (1265)
314 KOG2314 Translation initiation 97.7 0.00084 1.8E-08 74.6 14.8 174 2-185 218-411 (698)
315 KOG1912 WD40 repeat protein [G 97.6 0.0012 2.7E-08 75.7 15.9 187 8-209 81-304 (1062)
316 PF03178 CPSF_A: CPSF A subuni 97.6 0.003 6.6E-08 67.0 18.3 177 16-209 2-202 (321)
317 KOG1275 PAB-dependent poly(A) 97.6 0.00039 8.4E-09 80.9 11.8 143 4-152 185-342 (1118)
318 KOG0882 Cyclophilin-related pe 97.6 0.0022 4.7E-08 70.0 15.8 200 3-206 62-313 (558)
319 COG5170 CDC55 Serine/threonine 97.5 0.00065 1.4E-08 71.0 11.3 125 35-162 170-319 (460)
320 PRK02888 nitrous-oxide reducta 97.5 0.0053 1.2E-07 70.5 19.2 193 4-210 139-405 (635)
321 KOG1645 RING-finger-containing 97.5 0.0025 5.4E-08 68.7 15.0 135 1-139 200-347 (463)
322 COG3391 Uncharacterized conser 97.5 0.031 6.7E-07 61.3 24.2 178 2-185 81-270 (381)
323 KOG3621 WD40 repeat-containing 97.5 0.00095 2E-08 76.1 12.4 136 2-141 41-187 (726)
324 PF06977 SdiA-regulated: SdiA- 97.4 0.011 2.3E-07 61.3 18.7 181 1-185 28-239 (248)
325 KOG3617 WD40 and TPR repeat-co 97.4 0.0018 3.9E-08 74.9 13.8 106 1-111 22-131 (1416)
326 PF08553 VID27: VID27 cytoplas 97.4 0.005 1.1E-07 72.8 17.6 135 13-151 501-646 (794)
327 PF04053 Coatomer_WDAD: Coatom 97.4 0.002 4.2E-08 72.1 13.7 158 2-178 40-207 (443)
328 KOG1912 WD40 repeat protein [G 97.4 0.0033 7.1E-08 72.4 15.1 147 2-152 23-186 (1062)
329 KOG1645 RING-finger-containing 97.4 0.00046 9.9E-09 74.2 7.8 115 62-177 175-291 (463)
330 KOG0882 Cyclophilin-related pe 97.2 0.0012 2.5E-08 72.0 8.3 190 5-209 19-231 (558)
331 COG0823 TolB Periplasmic compo 97.1 0.0079 1.7E-07 67.0 14.9 139 1-143 244-390 (425)
332 PF04841 Vps16_N: Vps16, N-ter 97.1 0.13 2.8E-06 57.1 23.8 60 123-184 217-276 (410)
333 PRK11138 outer membrane biogen 97.1 0.039 8.6E-07 60.3 19.2 141 7-155 206-356 (394)
334 KOG3621 WD40 repeat-containing 97.0 0.0045 9.6E-08 70.8 11.6 117 36-153 32-155 (726)
335 KOG1008 Uncharacterized conser 97.0 0.00018 3.9E-09 81.0 0.4 159 37-212 56-229 (783)
336 KOG4640 Anaphase-promoting com 97.0 0.0028 6E-08 71.7 9.6 92 38-132 21-115 (665)
337 PF00780 CNH: CNH domain; Int 96.9 0.28 6E-06 50.5 23.2 143 4-154 5-167 (275)
338 PF08553 VID27: VID27 cytoplas 96.9 0.012 2.6E-07 69.7 14.4 124 57-185 501-636 (794)
339 PRK11138 outer membrane biogen 96.9 0.035 7.6E-07 60.7 17.3 134 6-151 256-393 (394)
340 KOG1920 IkappaB kinase complex 96.9 0.027 5.9E-07 67.9 16.7 110 43-155 201-325 (1265)
341 PF02897 Peptidase_S9_N: Proly 96.9 0.52 1.1E-05 51.7 25.9 150 2-155 131-312 (414)
342 COG3391 Uncharacterized conser 96.8 0.15 3.2E-06 56.0 20.8 152 1-154 122-285 (381)
343 KOG1832 HIV-1 Vpr-binding prot 96.7 0.0014 3.1E-08 76.0 4.8 147 30-182 1095-1245(1516)
344 KOG4649 PQQ (pyrrolo-quinoline 96.7 0.11 2.4E-06 53.7 17.5 104 6-112 63-166 (354)
345 KOG4640 Anaphase-promoting com 96.6 0.0062 1.3E-07 68.9 8.7 87 2-90 28-114 (665)
346 PF03178 CPSF_A: CPSF A subuni 96.6 0.27 5.8E-06 52.2 21.0 162 6-173 42-230 (321)
347 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.14 3E-06 46.7 15.5 104 84-204 2-109 (111)
348 KOG2114 Vacuolar assembly/sort 96.5 0.14 3E-06 60.1 18.9 147 7-155 78-246 (933)
349 smart00320 WD40 WD40 repeats. 96.5 0.0068 1.5E-07 40.3 5.3 36 74-109 5-40 (40)
350 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.16 3.4E-06 46.3 15.2 98 44-148 9-110 (111)
351 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.36 7.8E-06 52.2 21.1 178 1-183 49-296 (353)
352 PRK13616 lipoprotein LpqB; Pro 96.5 0.13 2.9E-06 59.6 18.5 163 1-177 356-550 (591)
353 KOG3617 WD40 and TPR repeat-co 96.4 0.01 2.2E-07 68.9 8.9 108 41-152 19-131 (1416)
354 PF06977 SdiA-regulated: SdiA- 96.3 0.3 6.5E-06 50.7 18.2 143 38-182 22-185 (248)
355 PF00780 CNH: CNH domain; Int 96.3 0.18 3.9E-06 51.9 16.5 122 52-177 9-148 (275)
356 COG3386 Gluconolactonase [Carb 96.3 0.76 1.7E-05 49.2 21.5 154 17-176 86-263 (307)
357 smart00320 WD40 WD40 repeats. 96.1 0.016 3.4E-07 38.4 5.4 31 120-150 10-40 (40)
358 PRK13616 lipoprotein LpqB; Pro 96.1 0.35 7.7E-06 56.2 19.4 136 38-181 350-510 (591)
359 KOG2395 Protein involved in va 96.0 0.17 3.7E-06 56.8 15.4 130 50-185 346-489 (644)
360 KOG3630 Nuclear pore complex, 95.9 0.064 1.4E-06 64.5 12.3 146 39-186 102-262 (1405)
361 PF04053 Coatomer_WDAD: Coatom 95.9 0.16 3.5E-06 57.0 14.9 136 6-152 117-262 (443)
362 PF05096 Glu_cyclase_2: Glutam 95.9 2.7 6E-05 44.0 22.9 168 4-179 54-242 (264)
363 cd00216 PQQ_DH Dehydrogenases 95.9 0.53 1.1E-05 53.3 19.3 144 5-156 227-428 (488)
364 PF14583 Pectate_lyase22: Olig 95.8 0.49 1.1E-05 51.9 17.8 182 1-185 42-255 (386)
365 PF05096 Glu_cyclase_2: Glutam 95.8 1.2 2.5E-05 46.7 19.7 175 28-209 35-214 (264)
366 PF02333 Phytase: Phytase; In 95.8 1.5 3.3E-05 48.2 21.4 195 4-210 66-291 (381)
367 PHA02713 hypothetical protein; 95.8 0.34 7.5E-06 55.9 17.4 142 5-153 303-489 (557)
368 PF10647 Gmad1: Lipoprotein Lp 95.7 1.4 3.1E-05 45.5 20.2 143 39-185 25-183 (253)
369 PF02897 Peptidase_S9_N: Proly 95.7 1.1 2.3E-05 49.2 20.2 113 40-154 126-262 (414)
370 KOG4649 PQQ (pyrrolo-quinoline 95.6 0.49 1.1E-05 49.2 15.6 109 45-156 18-127 (354)
371 cd00216 PQQ_DH Dehydrogenases 95.6 1.3 2.8E-05 50.3 20.9 148 6-157 61-269 (488)
372 KOG4441 Proteins containing BT 95.3 0.59 1.3E-05 54.2 17.0 145 5-154 332-501 (571)
373 PF06433 Me-amine-dh_H: Methyl 95.2 1.9 4.1E-05 46.7 19.3 192 2-213 102-324 (342)
374 KOG4441 Proteins containing BT 95.2 0.65 1.4E-05 53.8 16.9 145 6-154 285-454 (571)
375 KOG2444 WD40 repeat protein [G 95.1 0.035 7.5E-07 56.4 5.6 102 52-153 72-178 (238)
376 PF08596 Lgl_C: Lethal giant l 95.1 1.2 2.7E-05 49.3 18.0 189 6-197 97-334 (395)
377 KOG2395 Protein involved in va 95.1 0.21 4.4E-06 56.2 11.7 138 10-152 350-500 (644)
378 KOG2079 Vacuolar assembly/sort 94.9 0.083 1.8E-06 63.3 8.7 94 52-145 101-198 (1206)
379 KOG2444 WD40 repeat protein [G 94.8 0.078 1.7E-06 53.9 7.1 103 6-111 70-177 (238)
380 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.7 5.7 0.00012 45.7 22.7 197 6-212 69-336 (527)
381 KOG3630 Nuclear pore complex, 94.6 1.7 3.7E-05 53.0 18.3 135 3-139 109-260 (1405)
382 PF08596 Lgl_C: Lethal giant l 94.5 0.8 1.7E-05 50.7 14.7 76 76-152 81-173 (395)
383 COG3490 Uncharacterized protei 94.4 1.2 2.6E-05 46.9 14.8 184 18-213 93-314 (366)
384 PF14583 Pectate_lyase22: Olig 94.4 4.9 0.00011 44.3 20.1 175 17-196 169-379 (386)
385 COG5276 Uncharacterized conser 94.3 8.6 0.00019 41.0 22.4 162 37-209 86-252 (370)
386 PF06433 Me-amine-dh_H: Methyl 94.3 2.7 5.9E-05 45.5 17.6 157 7-165 148-332 (342)
387 COG3386 Gluconolactonase [Carb 94.3 6.5 0.00014 42.1 20.6 143 2-152 32-193 (307)
388 COG3204 Uncharacterized protei 94.2 1.5 3.4E-05 46.3 15.1 115 38-154 86-212 (316)
389 KOG2079 Vacuolar assembly/sort 94.1 0.16 3.5E-06 61.0 8.6 81 92-175 98-180 (1206)
390 PF00930 DPPIV_N: Dipeptidyl p 94.0 1.2 2.5E-05 48.2 14.6 140 2-142 191-347 (353)
391 KOG1897 Damage-specific DNA bi 94.0 3.7 8E-05 49.5 19.2 164 17-184 751-930 (1096)
392 TIGR03074 PQQ_membr_DH membran 94.0 12 0.00026 45.0 24.1 111 6-119 194-352 (764)
393 PF05694 SBP56: 56kDa selenium 93.9 3.6 7.9E-05 45.9 18.0 194 5-210 86-343 (461)
394 PF12234 Rav1p_C: RAVE protein 93.9 1.6 3.4E-05 51.1 15.9 98 87-185 35-146 (631)
395 PHA03098 kelch-like protein; P 93.7 2.1 4.6E-05 48.7 16.7 141 6-154 295-466 (534)
396 KOG1916 Nuclear protein, conta 93.5 0.059 1.3E-06 63.4 3.6 105 16-152 153-265 (1283)
397 PRK10115 protease 2; Provision 93.5 21 0.00046 42.4 25.2 106 2-110 134-254 (686)
398 PF15390 DUF4613: Domain of un 93.4 1.7 3.6E-05 49.9 14.6 138 39-187 21-175 (671)
399 KOG4499 Ca2+-binding protein R 93.3 2 4.4E-05 44.2 13.6 94 39-132 159-263 (310)
400 COG3490 Uncharacterized protei 93.1 4.4 9.6E-05 42.9 16.0 152 25-185 57-243 (366)
401 COG3204 Uncharacterized protei 93.0 9.3 0.0002 40.6 18.4 153 1-154 92-265 (316)
402 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.0 11 0.00024 43.3 21.1 141 17-157 272-495 (527)
403 PF08728 CRT10: CRT10; InterP 92.9 2.5 5.5E-05 49.9 15.6 149 52-208 51-245 (717)
404 PHA02713 hypothetical protein; 92.8 1.2 2.7E-05 51.3 13.0 144 5-154 351-535 (557)
405 TIGR02604 Piru_Ver_Nterm putat 92.7 6.4 0.00014 42.8 17.8 138 41-185 17-201 (367)
406 PF14870 PSII_BNR: Photosynthe 92.6 17 0.00036 39.0 21.0 143 36-184 143-292 (302)
407 KOG2280 Vacuolar assembly/sort 92.3 2.9 6.3E-05 49.1 14.7 49 18-70 66-114 (829)
408 TIGR02604 Piru_Ver_Nterm putat 92.2 3.3 7.2E-05 45.1 14.8 137 1-141 20-202 (367)
409 KOG2247 WD40 repeat-containing 92.2 0.018 3.9E-07 63.8 -2.8 131 2-139 42-176 (615)
410 PF12894 Apc4_WD40: Anaphase-p 91.9 0.48 1E-05 36.5 5.6 32 121-152 10-41 (47)
411 PF15390 DUF4613: Domain of un 91.9 8 0.00017 44.6 17.3 117 37-153 56-187 (671)
412 PF10168 Nup88: Nuclear pore c 91.9 3 6.5E-05 49.7 14.8 81 82-162 85-189 (717)
413 PF12234 Rav1p_C: RAVE protein 91.8 4.7 0.0001 47.2 15.9 107 43-152 35-156 (631)
414 PF12894 Apc4_WD40: Anaphase-p 91.7 0.55 1.2E-05 36.2 5.7 34 80-114 10-43 (47)
415 PF10647 Gmad1: Lipoprotein Lp 91.4 5.2 0.00011 41.4 14.6 102 83-186 25-130 (253)
416 PF13449 Phytase-like: Esteras 91.2 15 0.00034 39.3 18.4 148 36-185 18-232 (326)
417 KOG2377 Uncharacterized conser 90.8 13 0.00028 41.8 17.1 137 43-185 28-171 (657)
418 PHA03098 kelch-like protein; P 90.7 6.3 0.00014 44.9 15.7 143 5-154 342-513 (534)
419 PF14727 PHTB1_N: PTHB1 N-term 90.5 34 0.00073 38.4 23.3 145 5-151 36-203 (418)
420 TIGR03548 mutarot_permut cycli 90.5 16 0.00034 38.8 17.6 91 51-143 125-233 (323)
421 PF05694 SBP56: 56kDa selenium 90.5 3.9 8.3E-05 45.7 12.9 127 15-141 221-392 (461)
422 PF10214 Rrn6: RNA polymerase 90.4 9.4 0.0002 46.0 17.3 115 37-154 145-278 (765)
423 PHA02790 Kelch-like protein; P 90.2 16 0.00034 41.4 18.2 140 6-154 272-425 (480)
424 PF07569 Hira: TUP1-like enhan 89.0 2.2 4.7E-05 43.4 9.1 64 90-154 19-97 (219)
425 PRK10115 protease 2; Provision 88.5 56 0.0012 39.0 21.6 112 38-152 127-255 (686)
426 COG3823 Glutamine cyclotransfe 88.1 19 0.00041 36.7 14.6 101 5-114 55-161 (262)
427 TIGR03074 PQQ_membr_DH membran 88.1 47 0.001 40.1 20.7 148 5-155 259-480 (764)
428 PF14870 PSII_BNR: Photosynthe 87.9 42 0.00091 36.0 20.7 118 77-198 140-260 (302)
429 PF14781 BBS2_N: Ciliary BBSom 87.8 15 0.00032 34.8 12.9 107 5-116 9-130 (136)
430 PF10168 Nup88: Nuclear pore c 87.7 18 0.0004 43.2 16.9 73 39-113 86-181 (717)
431 TIGR03118 PEPCTERM_chp_1 conse 87.6 45 0.00097 35.9 20.2 202 1-210 29-280 (336)
432 KOG1896 mRNA cleavage and poly 87.5 24 0.00052 43.8 17.5 183 15-210 1003-1214(1366)
433 KOG2377 Uncharacterized conser 87.3 6.7 0.00015 43.9 11.9 134 5-141 32-172 (657)
434 PF04841 Vps16_N: Vps16, N-ter 85.9 63 0.0014 36.0 19.9 70 81-152 216-287 (410)
435 PF10214 Rrn6: RNA polymerase 85.5 57 0.0012 39.4 19.8 141 36-178 78-257 (765)
436 KOG4499 Ca2+-binding protein R 85.5 34 0.00074 35.6 15.0 130 39-176 110-262 (310)
437 PLN00033 photosystem II stabil 85.5 46 0.00099 37.1 17.6 110 35-149 278-396 (398)
438 KOG1898 Splicing factor 3b, su 85.4 43 0.00092 41.3 17.9 155 17-176 854-1028(1205)
439 PRK13684 Ycf48-like protein; P 84.8 30 0.00065 37.3 15.5 143 3-151 181-330 (334)
440 KOG1900 Nuclear pore complex, 84.6 10 0.00022 47.2 12.8 140 12-153 95-273 (1311)
441 KOG1916 Nuclear protein, conta 84.4 0.25 5.5E-06 58.4 -0.6 109 4-116 193-328 (1283)
442 PLN02153 epithiospecifier prot 84.3 39 0.00084 36.1 16.1 144 6-154 86-286 (341)
443 PF10313 DUF2415: Uncharacteri 84.3 3.7 8.1E-05 31.2 5.8 32 123-154 1-35 (43)
444 PRK13684 Ycf48-like protein; P 84.0 67 0.0014 34.6 22.4 141 37-184 172-319 (334)
445 PF14761 HPS3_N: Hermansky-Pud 83.8 29 0.00063 35.4 13.7 101 52-153 30-164 (215)
446 PLN02153 epithiospecifier prot 83.1 37 0.00081 36.3 15.4 102 51-154 87-227 (341)
447 COG5167 VID27 Protein involved 82.7 17 0.00037 41.4 12.5 137 11-153 485-633 (776)
448 PHA02790 Kelch-like protein; P 82.7 25 0.00053 39.9 14.4 140 5-154 318-472 (480)
449 TIGR03032 conserved hypothetic 82.3 79 0.0017 34.3 17.1 90 85-178 206-315 (335)
450 PF07569 Hira: TUP1-like enhan 82.3 7 0.00015 39.7 8.9 65 46-112 19-96 (219)
451 KOG4460 Nuclear pore complex, 81.6 18 0.00039 41.3 12.1 102 53-155 55-201 (741)
452 COG5167 VID27 Protein involved 81.5 20 0.00043 40.9 12.4 133 46-185 476-621 (776)
453 PF10313 DUF2415: Uncharacteri 81.4 5.3 0.00012 30.4 5.6 31 82-112 1-34 (43)
454 PF14727 PHTB1_N: PTHB1 N-term 81.4 82 0.0018 35.4 17.5 108 47-154 34-165 (418)
455 TIGR03547 muta_rot_YjhT mutatr 80.9 83 0.0018 33.5 18.3 40 60-102 168-210 (346)
456 PLN02193 nitrile-specifier pro 80.0 71 0.0015 36.1 16.9 99 51-154 230-353 (470)
457 PF14655 RAB3GAP2_N: Rab3 GTPa 79.7 17 0.00038 40.6 11.5 79 77-155 303-401 (415)
458 TIGR03548 mutarot_permut cycli 79.3 90 0.002 33.0 19.7 103 51-154 74-196 (323)
459 PF14781 BBS2_N: Ciliary BBSom 79.0 60 0.0013 30.8 13.7 85 87-176 4-101 (136)
460 TIGR03118 PEPCTERM_chp_1 conse 77.7 1.1E+02 0.0024 33.1 16.2 146 8-155 102-282 (336)
461 PF12768 Rax2: Cortical protei 77.0 43 0.00094 35.5 13.0 112 16-131 16-145 (281)
462 PLN02193 nitrile-specifier pro 77.0 87 0.0019 35.4 16.4 142 6-154 229-412 (470)
463 PF07995 GSDH: Glucose / Sorbo 76.1 97 0.0021 33.3 15.8 101 1-103 8-135 (331)
464 KOG1897 Damage-specific DNA bi 76.1 2.1E+02 0.0045 35.5 21.6 102 52-153 501-614 (1096)
465 PF11715 Nup160: Nucleoporin N 76.0 12 0.00025 43.0 9.2 69 52-120 160-257 (547)
466 COG1520 FOG: WD40-like repeat 75.7 89 0.0019 33.8 15.6 143 7-155 69-220 (370)
467 PF14761 HPS3_N: Hermansky-Pud 75.1 39 0.00085 34.5 11.5 50 94-143 29-80 (215)
468 TIGR03547 muta_rot_YjhT mutatr 74.8 64 0.0014 34.4 14.0 12 16-27 168-179 (346)
469 PRK05560 DNA gyrase subunit A; 74.7 2.1E+02 0.0046 34.9 20.0 203 4-213 496-725 (805)
470 COG5290 IkappaB kinase complex 74.6 25 0.00055 41.9 11.1 90 85-178 250-347 (1243)
471 TIGR02276 beta_rpt_yvtn 40-res 72.7 16 0.00035 26.1 6.2 40 91-130 1-41 (42)
472 PF08728 CRT10: CRT10; InterP 72.7 23 0.00049 42.2 10.4 105 6-111 114-246 (717)
473 PF12768 Rax2: Cortical protei 72.3 87 0.0019 33.2 13.9 135 59-198 15-169 (281)
474 PRK14131 N-acetylneuraminic ac 71.3 1.6E+02 0.0035 32.0 17.4 13 60-72 189-201 (376)
475 KOG2247 WD40 repeat-containing 70.8 0.47 1E-05 53.1 -3.5 134 43-184 40-176 (615)
476 PF08801 Nucleoporin_N: Nup133 69.9 91 0.002 34.5 14.2 31 123-153 190-220 (422)
477 PF05935 Arylsulfotrans: Aryls 68.3 92 0.002 35.4 14.0 135 14-154 126-303 (477)
478 COG4257 Vgb Streptogramin lyas 68.1 1.7E+02 0.0038 31.2 18.4 137 32-184 56-205 (353)
479 PF14655 RAB3GAP2_N: Rab3 GTPa 68.0 68 0.0015 36.0 12.4 82 37-120 307-407 (415)
480 COG4590 ABC-type uncharacteriz 67.3 22 0.00047 40.0 8.2 150 2-154 228-388 (733)
481 COG5276 Uncharacterized conser 66.5 1.9E+02 0.0042 31.2 22.3 143 6-155 96-244 (370)
482 TIGR01063 gyrA DNA gyrase, A s 65.2 3.3E+02 0.0071 33.3 20.1 201 5-213 495-722 (800)
483 TIGR02276 beta_rpt_yvtn 40-res 64.8 28 0.00061 24.8 6.0 31 4-34 1-32 (42)
484 PF11635 Med16: Mediator compl 64.5 1.6E+02 0.0035 35.6 15.7 147 1-147 109-345 (753)
485 PRK14131 N-acetylneuraminic ac 63.9 1.3E+02 0.0028 32.8 13.7 12 17-28 190-201 (376)
486 PF07995 GSDH: Glucose / Sorbo 63.4 89 0.0019 33.6 12.1 101 40-142 4-133 (331)
487 PF12657 TFIIIC_delta: Transcr 62.3 44 0.00096 32.4 8.7 32 123-154 86-123 (173)
488 PF03022 MRJP: Major royal jel 61.7 2.2E+02 0.0047 30.1 20.1 160 17-177 35-243 (287)
489 PF08149 BING4CT: BING4CT (NUC 61.7 3.7 8E-05 35.3 0.9 28 251-292 1-28 (80)
490 COG1520 FOG: WD40-like repeat 60.2 2.5E+02 0.0054 30.3 16.4 145 5-155 111-271 (370)
491 TIGR03606 non_repeat_PQQ dehyd 59.9 3.1E+02 0.0067 31.3 15.9 56 79-134 27-90 (454)
492 PF11715 Nup160: Nucleoporin N 59.8 41 0.00089 38.5 9.3 68 5-72 157-252 (547)
493 KOG1983 Tomosyn and related SN 58.9 87 0.0019 39.1 12.2 24 1-24 42-65 (993)
494 PF03088 Str_synth: Strictosid 58.3 37 0.00081 29.8 6.6 44 99-142 33-76 (89)
495 KOG1898 Splicing factor 3b, su 57.5 1.3E+02 0.0028 37.3 12.8 131 15-152 911-1048(1205)
496 TIGR03606 non_repeat_PQQ dehyd 53.2 3.9E+02 0.0085 30.4 20.1 103 39-142 31-165 (454)
497 KOG4460 Nuclear pore complex, 53.1 1.9E+02 0.0041 33.5 12.4 79 40-119 106-206 (741)
498 COG4247 Phy 3-phytase (myo-ino 53.0 3.1E+02 0.0067 29.1 19.0 146 3-152 64-232 (364)
499 PF10395 Utp8: Utp8 family; I 51.7 4.9E+02 0.011 31.1 21.0 109 2-111 35-159 (670)
500 PF07250 Glyoxal_oxid_N: Glyox 51.4 1.9E+02 0.0042 30.0 11.6 117 1-119 73-205 (243)
No 1
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-65 Score=539.24 Aligned_cols=529 Identities=26% Similarity=0.343 Sum_probs=438.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
.|+..+.|||+++..|.|.|..+.++.....|....++.|+-+.|++..+++|.+++++|.|.+||+.+..+..+....|
T Consensus 128 ~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H 207 (673)
T KOG4378|consen 128 DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH 207 (673)
T ss_pred EecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc
Confidence 37888999999999999999999999999999877788999999999999999999999999999999999888889999
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743 81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (633)
Q Consensus 81 ~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~ 159 (633)
..+...|||+| +..+|++.+.|+.|.+||++..+....+.+..+...++|.++|.+|++|...|.|+.||+|..+.|+.
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred cCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 99999999999 88899999999999999999999888999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccccccccCCCCCCccCCCCCCC
Q 006743 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239 (633)
Q Consensus 160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~s~a~sss~sslt~~ssG~~s 239 (633)
++. .|...|++++|.+.- .++..+. +-.|+. ....... +. ..+..+.+.|
T Consensus 288 v~s--ah~~sVt~vafq~s~-tvltkss------ln~G~~------------~~~~~vn-----~~-s~~~~aat~g--- 337 (673)
T KOG4378|consen 288 VRS--AHDASVTRVAFQPSP-TVLTKSS------LNSGDN------------QQNGSVN-----SS-SNATGAATEG--- 337 (673)
T ss_pred Eee--ecccceeEEEeeecc-eeeeccc------cccCcc------------CCCceec-----cc-cccccccCCC---
Confidence 998 788999999999853 3333211 001110 0000000 00 0010111111
Q ss_pred ccccCCCCCCCCcccccCCCCCcceeecCCCCCCCCCcccccCcccccCcCCCCCcccccCCCCcc-ccCccCCCccccc
Q 006743 240 SLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAK-KDHLPIDKKPSSM 318 (633)
Q Consensus 240 si~~~st~e~tP~r~~l~~g~~l~~l~~~R~~~~~~dd~~vfsPl~dv~p~~~s~~~~w~~~~g~~-~~~~~~~~~~~~~ 318 (633)
+-+...-|++| +.++|+..+...+++-|..-+..+++.+|.|++++.+++. |-+.+|-. +|++..+-+++
T Consensus 338 -~rNsgiVe~aP-~~~l~~s~p~~~lsa~~~~ts~~~~~~g~p~iI~~ds~~k-----~~Ds~G~n~~d~~~~d~g~S-- 408 (673)
T KOG4378|consen 338 -PRNSGIVERAP-SDELRKSIPANLLSAQNQLTSLGYGVSGTPTIIRRDSFCK-----FLDSQGPNAVDRMSTDLGAS-- 408 (673)
T ss_pred -CccccchhcCc-hhhhhhccCchhhhhhccccccccCccCCCceeehhhhhh-----hhhccCCccccceeeccCcc--
Confidence 23555678899 6999999999999999998889999999999999999998 86667766 57888887874
Q ss_pred cCCCCCCCccccCCCCceeeeee-ccCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCcCCCccchhhhhccCCCC
Q 006743 319 LFPSSSRRFPYAEDGSNEHSVFD-WKSSSTSKQDDARSFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLN 397 (633)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (633)
.|...++ ||+| |-+ .+| |.+|.+++ | |+++ +|..+-...-
T Consensus 409 ---------S~gD~fs---PIrDD~~~----------------~n~----K~~d~~~~--k---Gd~f--~f~p~~ns~f 449 (673)
T KOG4378|consen 409 ---------SYGDSFS---PIRDDWET----------------LNR----KPQDYETA--K---GDRF--SFCPPVNSGF 449 (673)
T ss_pred ---------cccccCC---ccccchhh----------------cCC----CCCchhcc--c---cCcc--ccccccccCC
Confidence 2233333 6663 221 122 77788887 3 5666 4554444444
Q ss_pred CCCccccccCCCccccccccccccccccccccccccccccccccccccccccccccCcCCCCCCCCCCCCcccccccccc
Q 006743 398 MPSRYGMSTSSGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGIL 477 (633)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (633)
-|+|-.+ ++++.|++.|++.|.| ....+|...+.+..+.++.++ +.+.++|+++ ++..++. .|.||++.
T Consensus 450 sp~~n~V-~Ss~ttS~~~~spl~d-f~~s~G~~~~~n~~lt~e~~~--~~s~~~e~~s----d~~~~s~---kl~t~gv~ 518 (673)
T KOG4378|consen 450 SPVDNSV-NSSTTTSLQRNSPLKD-FSNSSGDGKLMNIALTDELCE--EQSANIEVAS----DTGGGSD---KLNTPGVD 518 (673)
T ss_pred CcccCcc-cccccchhhccCcccc-ccCCCCcchhhcccccchHHH--Hhhcceeeec----cCCCCcc---cccCCCCC
Confidence 5677665 5568999999999999 777778888888888888776 9999999995 5566555 89999999
Q ss_pred CCCCCCCCCCCCCccccCCCCcchhhhcccccCCccccCCCcccCCChhhHHHHHhhcccccccccccCCCCCCccCCCC
Q 006743 478 GSGNLDSSRPSSLTLTHREPRRTYAERISTTSGTSLSVGSPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINGGM 557 (633)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (633)
.++|+++. |.+ ++.|+ +++|++||.+++--.+-.++||+||+|.| +|+.+..++++|.++.+||++
T Consensus 519 a~gn~~~~-~lS-N~TRn--s~~~~~~i~~~s~~~~L~~~p~i~ksss~----------n~p~~~~a~~ag~~s~l~~~v 584 (673)
T KOG4378|consen 519 AEGNRRLR-LLS-NATRN--STPHHANITPQSSNPLLKPQPLIAKSSSG----------NLPAQMDADWAGEFSELRDFV 584 (673)
T ss_pred Cccccccc-ccc-ccccc--CCcccccCCCcccCccccCCcccccCCCC----------CCchhhhhhhhhhhHHHHHHH
Confidence 99999987 555 99999 99999999999955545599999999998 388889999999999999999
Q ss_pred CCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhccccccchhccccccCC
Q 006743 558 SQSLKSPQPDPPQGSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVCMCCTLDLPLVFQNFLSHI 633 (633)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
.|.+.. +.+..+-++|++|+|||++++|||+||.+||+||||||||||||||||+||||.|+++|++||++++||
T Consensus 585 ~qs~~~-~~q~~~~~~fs~q~~q~~~~~tlddfq~~~hrdirNl~~ell~Qfhm~~~Ems~llery~eNe~l~ael 659 (673)
T KOG4378|consen 585 DQSCEK-VEQELEYVTFSNQRLQANKMTTLDDFQVENHRDIRNLALELLLQFHMFMREMSRLLERYNENEMLKAEL 659 (673)
T ss_pred Hhhhhh-HHhhcccchhHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999887 777888999999999999999999999999999999999999999999999999999999999988875
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.1e-27 Score=245.20 Aligned_cols=282 Identities=15% Similarity=0.199 Sum_probs=223.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
+|+|+|.+|++|+.|.++++||+.+..+....++ |...|.||+|+|||. .|++|+.||+|++||..+++.....+.+|
T Consensus 122 ~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~~g~~l~gH 199 (480)
T KOG0271|consen 122 QFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQIGRALRGH 199 (480)
T ss_pred EecCCCceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCcccccccCc
Confidence 4899999999999999999999999999999987 778889999999998 89999999999999999998888999999
Q ss_pred CCCeEEEEEcC-----CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743 81 SAPTAGISFSS-----DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 81 ~~~VtsLafSP-----dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~ 154 (633)
...|++++|.| ..++|++++.||.|+|||+..++++..+ +|..+|+|++|--+ .+|++|+.|++|++|+...+
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccch
Confidence 99999999976 5679999999999999999999998887 79999999999755 48899999999999999886
Q ss_pred CCceEEEeecCCCCCeeEEEEccC-----------CCe---------------EEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 155 PQPLTVLRACSSSEAVSSLCWQRA-----------KPV---------------FIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 155 ~k~v~~l~~~~H~~~VtsLafsPd-----------g~~---------------Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
...+.++ +|..+|..++.+.+ +++ -+++ ...+..|++++.|.++.+|+.
T Consensus 279 -~~~r~lk--GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~--~~~~erlVSgsDd~tlflW~p 353 (480)
T KOG0271|consen 279 -KLCRELK--GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL--KDSGERLVSGSDDFTLFLWNP 353 (480)
T ss_pred -hHHHhhc--ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh--ccCcceeEEecCCceEEEecc
Confidence 4556666 89999999988732 211 0111 123356899999999999975
Q ss_pred CCCCCCCcccccccccCCCCCCccCCCCCCCccccCCCCCCCCcccccCCCCCcceeecCCCCCCCCCcccccCc---cc
Q 006743 209 LPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSP---LV 285 (633)
Q Consensus 209 r~~~~~ss~s~s~a~sss~sslt~~ssG~~ssi~~~st~e~tP~r~~l~~g~~l~~l~~~R~~~~~~dd~~vfsP---l~ 285 (633)
.....+ - .++.....+.. ...||| ++
T Consensus 354 ~~~kkp-------------------------------------i-~rmtgHq~lVn-------------~V~fSPd~r~I 382 (480)
T KOG0271|consen 354 FKSKKP-------------------------------------I-TRMTGHQALVN-------------HVSFSPDGRYI 382 (480)
T ss_pred cccccc-------------------------------------h-hhhhchhhhee-------------eEEECCCccEE
Confidence 322110 0 01101111110 124777 88
Q ss_pred ccCcCCCCCcccccCCCCccccCccCCC--ccccccCCCCCCCccccCCCCceeeeeeccC
Q 006743 286 DVQPITPSLDKLWDGHEGAKKDHLPIDK--KPSSMLFPSSSRRFPYAEDGSNEHSVFDWKS 344 (633)
Q Consensus 286 dv~p~~~s~~~~w~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (633)
+-.+.+.| +|+|++..|...++|-+|. -++ +.| |.+.||-....-..-.-|||-++
T Consensus 383 ASaSFDkS-VkLW~g~tGk~lasfRGHv~~VYq-vaw-saDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 383 ASASFDKS-VKLWDGRTGKFLASFRGHVAAVYQ-VAW-SADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred EEeecccc-eeeeeCCCcchhhhhhhccceeEE-EEe-ccCccEEEEcCCCceEEEEEeee
Confidence 88889987 5999999999999999886 333 458 99999887666655566666554
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.4e-27 Score=246.72 Aligned_cols=198 Identities=18% Similarity=0.222 Sum_probs=176.2
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd-g~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
.|+.|++.|++|+.+|.++||+..+...++++.+ |...|.++.|+|. ....+++|+.||+|++|++.+..+ +..+.+
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g-H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~-l~~l~g 259 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG-HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP-LQDLEG 259 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCcceeEEEec-cccceeeEEEccCCCccceeeeccCCceeeeccCCCcc-hhhhhc
Confidence 3789999999999999999999999999999997 6667788999998 355799999999999999998764 678999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
|...|..++|+|+|++|++++.|.+-++||++++..+... +|...|.+++|++||..+++|+-|..-+|||+|++. ++
T Consensus 260 H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~i 338 (459)
T KOG0272|consen 260 HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CI 338 (459)
T ss_pred chhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc-EE
Confidence 9999999999999999999999999999999998776554 799999999999999999999999999999999994 44
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCC
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS 215 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~s 215 (633)
..+. +|...|.+|+|+|+| ..+++|+.|++++|||+|......
T Consensus 339 m~L~--gH~k~I~~V~fsPNG------------y~lATgs~Dnt~kVWDLR~r~~ly 381 (459)
T KOG0272|consen 339 MFLA--GHIKEILSVAFSPNG------------YHLATGSSDNTCKVWDLRMRSELY 381 (459)
T ss_pred EEec--ccccceeeEeECCCc------------eEEeecCCCCcEEEeeecccccce
Confidence 4455 899999999999954 455666889999999999877743
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.1e-26 Score=243.71 Aligned_cols=189 Identities=16% Similarity=0.214 Sum_probs=172.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
+|+|+|++|++++.|.+-++||+.++..+....+ |...|.+++|.++|. ++++|+.|..-+|||++++.+ +..+.+|
T Consensus 268 afHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG-Hs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~-im~L~gH 344 (459)
T KOG0272|consen 268 AFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG-HSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRC-IMFLAGH 344 (459)
T ss_pred eecCCCceeeecccccchhhcccccchhhHhhcc-cccccceeEecCCCc-eeeccCccchhheeecccCcE-EEEeccc
Confidence 6999999999999999999999999988877776 666778899999998 999999999999999999986 6778999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCce
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
..+|.+|+|+|+|..|++|+.|++++|||++..+.+.++ +|..-|+.|+|.| .|.+|++++.|++++||..++. +++
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ 423 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPL 423 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc-ccc
Confidence 999999999999999999999999999999998888877 6999999999999 7899999999999999999987 567
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD 207 (633)
+.+. +|.+.|.++++++++++++ +++.|+++|+|.
T Consensus 424 ksLa--GHe~kV~s~Dis~d~~~i~------------t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 424 KSLA--GHEGKVISLDISPDSQAIA------------TSSFDRTIKLWR 458 (459)
T ss_pred hhhc--CCccceEEEEeccCCceEE------------EeccCceeeecc
Confidence 7777 9999999999999665554 457799999995
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=2.9e-26 Score=255.18 Aligned_cols=195 Identities=18% Similarity=0.290 Sum_probs=176.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
.|+|+.++|++++.|++|++|.+.+..++..+++ |..+|.++.|+|.|- +||+++.|++.++|......+ .+.+.+|
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G-H~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~~~P-lRifagh 534 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-HLAPVWDVQFAPRGY-YFATASHDQTARLWSTDHNKP-LRIFAGH 534 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecC-CCcceeeEEecCCce-EEEecCCCceeeeeecccCCc-hhhhccc
Confidence 4899999999999999999999999999999996 778899999999985 999999999999999988774 6788999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~ 159 (633)
...|.|+.|+|+..++++|+.|++|++||+.+|..++.+ +|.++|.+++|+|+|++|++|+.||.|.+||+.++. ++.
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-~v~ 613 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS-LVK 613 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc-chh
Confidence 999999999999999999999999999999999999998 799999999999999999999999999999999973 444
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
.+. +|.+.|.++.|+.+ +.+|++++.|+.|++||+.....
T Consensus 614 ~l~--~Ht~ti~SlsFS~d------------g~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 614 QLK--GHTGTIYSLSFSRD------------GNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred hhh--cccCceeEEEEecC------------CCEEEecCCCCeEEEEEchhhcc
Confidence 444 79999999999985 45556668899999999975443
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=1e-24 Score=219.51 Aligned_cols=189 Identities=20% Similarity=0.323 Sum_probs=161.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QH 80 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~H 80 (633)
.++||++.++++.|+.+++||+.+++..+.|.+ |...|.+++|+++++ .+++|+.|++|++|++.+... ..... .|
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck-~t~~~~~~ 147 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCK-YTIHEDSH 147 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEe-cCCceEEEEecCCCc-eeecCCCcceeeeeeecccEE-EEEecCCC
Confidence 578999999999999999999999999999998 555567799999998 799999999999999988763 33222 23
Q ss_pred CCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743 81 SAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (633)
Q Consensus 81 ~~~VtsLafSPd--g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~ 157 (633)
.+.|.|++|+|+ ..+|++++.|++|++||+++.+....+ +|.+.++.++++|||...++|+.||.+.+||++.++.
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~- 226 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN- 226 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-
Confidence 789999999995 789999999999999999998877665 7999999999999999999999999999999998853
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
+...+|...|.+++|+|+..+|+. ..+..|+|||+..
T Consensus 227 ---lysl~a~~~v~sl~fspnrywL~~-------------at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 227 ---LYSLEAFDIVNSLCFSPNRYWLCA-------------ATATSIKIWDLES 263 (315)
T ss_pred ---eEeccCCCeEeeEEecCCceeEee-------------ccCCceEEEeccc
Confidence 444578999999999997544443 3456688888763
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-25 Score=231.47 Aligned_cols=207 Identities=15% Similarity=0.225 Sum_probs=174.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-----CCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-----SRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd-----g~~lLaSGs~DGtI~IWDl~t~~~~v~ 75 (633)
+|+|||+.||+|+.||.|++||.++|+.+..-...|...|.+++|.|- .+ +|++++.||.|+|||+..+.+ +.
T Consensus 164 awsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~-~~ 241 (480)
T KOG0271|consen 164 AWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTC-VR 241 (480)
T ss_pred EECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceE-EE
Confidence 599999999999999999999999988765444447888999999763 34 899999999999999998875 67
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEe-----------cCCC--------
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFI-----------DDDW-------- 135 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafS-----------PdG~-------- 135 (633)
++.+|..+|+|++|-- ..+|++|+.|++|++|+...|++.+.+ +|...|+.++++ |.++
T Consensus 242 ~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 242 TLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred EeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 8999999999999974 458999999999999999999988877 688999998877 2233
Q ss_pred -----------------EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec------------
Q 006743 136 -----------------ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET------------ 186 (633)
Q Consensus 136 -----------------~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s------------ 186 (633)
.|++|+.|.++.+|+....++++.... +|...|..+.|+||+++|++++
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh--chhhheeeEEECCCccEEEEeecccceeeeeCCC
Confidence 499999999999999998877777666 8999999999999999998664
Q ss_pred ------------------cCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 187 ------------------TCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 187 ------------------~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
+..|..++++++.|.++++||++..+
T Consensus 399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 34566677777777777777776543
No 8
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=232.83 Aligned_cols=201 Identities=19% Similarity=0.290 Sum_probs=171.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~ 78 (633)
.|+++|+++++++.|+.+++|+....+ ....+.+ |...|++++|+|++. ++++++.|++|+|||+......++.++
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~-h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~ 243 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSG-HTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLK 243 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhccccc-cccceeeeEECCCCc-EEEEecCCceEEEeeccCCCeEEEEec
Confidence 389999999999999999999997777 5666644 777899999999998 899999999999999965544578899
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC-
Q 006743 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ- 156 (633)
Q Consensus 79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k- 156 (633)
+|...|++++|+|+++++++|+.|++|+|||+++++++..+ .|.+.|.+++|++++++|++++.|+.|+|||+.++..
T Consensus 244 gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 99999999999999999999999999999999999998888 6999999999999999999999999999999999853
Q ss_pred ceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743 157 PLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (633)
Q Consensus 157 ~v~~l~~~~H~~--~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~ 217 (633)
+...+. .+.. ++++++|+|++.++ +.+..|+.+++||++.......+
T Consensus 324 ~~~~~~--~~~~~~~~~~~~fsp~~~~l------------l~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 324 CLKLLS--GAENSAPVTSVQFSPNGKYL------------LSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred eeeccc--CCCCCCceeEEEECCCCcEE------------EEecCCCeEEEEEccCCcceeee
Confidence 233444 3333 69999999965554 55577999999999865554443
No 9
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=7.4e-23 Score=211.39 Aligned_cols=204 Identities=18% Similarity=0.304 Sum_probs=175.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
++.|.++++++|+.|++|+|||+.+|++...+.+ |-..|+.|++++... |+++++.|+.|+.||++.++. ++.+.+|
T Consensus 158 avdP~n~wf~tgs~DrtikIwDlatg~LkltltG-hi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~nkv-IR~YhGH 234 (460)
T KOG0285|consen 158 AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-HIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEYNKV-IRHYHGH 234 (460)
T ss_pred eeCCCceeEEecCCCceeEEEEcccCeEEEeecc-hhheeeeeeecccCc-eEEEecCCCeeEEEechhhhh-HHHhccc
Confidence 3668889999999999999999999999999987 667889999999988 899999999999999998884 6778899
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~ 159 (633)
-..|+|++.+|.-..|++|+.|.++++||+|+...+..+ +|..+|..+.+.|-.-.+++|+.|++|++||++.++. ..
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt-~~ 313 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT-MI 313 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce-eE
Confidence 999999999999999999999999999999999988888 6999999999999888999999999999999999853 23
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEec----------------------------cCCCCeEEEEeeCCCeEEccCCCC
Q 006743 160 VLRACSSSEAVSSLCWQRAKPVFIDET----------------------------TCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 160 ~l~~~~H~~~VtsLafsPdg~~Las~s----------------------------~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
.+. .|...|.+++.+|....+++++ ..+.+.++++|+..+.+..||-+.
T Consensus 314 tlt--~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 314 TLT--HHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred eee--cccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCc
Confidence 333 6899999999998655554332 122344667777788888888764
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.90 E-value=2.6e-22 Score=202.25 Aligned_cols=190 Identities=18% Similarity=0.231 Sum_probs=161.3
Q ss_pred CCEEEEEECCCcEEEEECCC-----CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 6 DEHLASISLSGDLILHNLAS-----GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~t-----gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
-+.|++++.|..|.+|++.. |..++.+++ |...|..+..+++++ ++++++.|+++++||+.+++ ..+.+.+|
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~-~t~~f~GH 104 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGE-STRRFVGH 104 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCc-eEEeccccceEEEEEecCCc-EEEEEEec
Confidence 45788999999999999853 557788887 778899999999998 89999999999999999986 46788999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCCCC
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGKPQ 156 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~ItsLafSPd--G~~LatGs~DGsV~IWDlrs~~k 156 (633)
...|.+++|++|.+.|++|+.|++|++||+.......... +.+.|.|++|+|+ +-+|+.++.|++|++||+++.+
T Consensus 105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~- 183 (315)
T KOG0279|consen 105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ- 183 (315)
T ss_pred CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-
Confidence 9999999999999999999999999999998655444443 3789999999997 7899999999999999999873
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
....+ .+|.+.++.++++|||.. +++|+.|+.+.+||++....
T Consensus 184 l~~~~--~gh~~~v~t~~vSpDGsl------------casGgkdg~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 184 LRTTF--IGHSGYVNTVTVSPDGSL------------CASGGKDGEAMLWDLNEGKN 226 (315)
T ss_pred hhhcc--ccccccEEEEEECCCCCE------------EecCCCCceEEEEEccCCce
Confidence 22333 489999999999996554 45557899999999965444
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.90 E-value=5.5e-24 Score=222.74 Aligned_cols=192 Identities=19% Similarity=0.275 Sum_probs=171.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
.|+++|.++++|+.+|.|++|+. ....++.++.||...|++++|+|++. .|++|++||+|+|||....+. ...+.+|
T Consensus 145 ~ws~~g~wmiSgD~gG~iKyWqp-nmnnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~ke-e~vL~GH 221 (464)
T KOG0284|consen 145 KWSHNGTWMISGDKGGMIKYWQP-NMNNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKE-ERVLRGH 221 (464)
T ss_pred EEccCCCEEEEcCCCceEEeccc-chhhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCch-hheeccC
Confidence 38899999999999999999996 45667778888889999999999876 899999999999999976664 4667999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~ 159 (633)
.-.|.+++|+|...+|++++.|..|++||.+++.++..+ .|+..|..+.|++++++|++++.|..+++||+++. +.+.
T Consensus 222 gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~ 300 (464)
T KOG0284|consen 222 GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELF 300 (464)
T ss_pred CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHH
Confidence 999999999999999999999999999999999999877 69999999999999999999999999999999965 3344
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
.++ +|...|+++.|+|- .+.+|.+++.|+.|..|.+.
T Consensus 301 ~~r--~Hkkdv~~~~WhP~-----------~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 301 TYR--GHKKDVTSLTWHPL-----------NESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred Hhh--cchhhheeeccccc-----------cccceeeccCCCceEEEecc
Confidence 444 89999999999993 56677888889999999886
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.90 E-value=2.7e-22 Score=203.09 Aligned_cols=200 Identities=19% Similarity=0.262 Sum_probs=171.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC--c----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASG--A----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tg--k----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v 74 (633)
||+|.|+++|.|+.|+...||++.+. + ..+++.+ |...+.|+.|.+|+. |++++.|.+..+||+++++. +
T Consensus 104 A~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~g-HtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~-~ 179 (343)
T KOG0286|consen 104 AYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAG-HTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQ-T 179 (343)
T ss_pred EECCCCCeEEecCcCceeEEEecccccccccceeeeeecC-ccceeEEEEEcCCCc--eEecCCCceEEEEEcccceE-E
Confidence 69999999999999999999999754 2 2344554 778899999998764 99999999999999999884 7
Q ss_pred EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 75 SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 75 ~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
..+.+|.+.|.++.+.| +++.|++|+.|+..++||+|.+.+++.+ +|+..|++++|.|+|.-+++|+.|++.++||+|
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence 88999999999999999 9999999999999999999999999888 699999999999999999999999999999999
Q ss_pred CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743 153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (633)
Q Consensus 153 s~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~ 217 (633)
.. +.+.++....-..+|++++|+..|++| +.|..|..+.+||.....-...+
T Consensus 260 aD-~~~a~ys~~~~~~gitSv~FS~SGRlL------------fagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 260 AD-QELAVYSHDSIICGITSVAFSKSGRLL------------FAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred CC-cEEeeeccCcccCCceeEEEcccccEE------------EeeecCCceeEeeccccceEEEe
Confidence 87 445666655566789999999865555 44466999999998765544433
No 13
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.90 E-value=9.7e-23 Score=206.92 Aligned_cols=198 Identities=16% Similarity=0.236 Sum_probs=172.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECC-CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 1 MYNCKDEHLASISLSGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~-tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
.|+|+|.+||+|+.|..|.+|++. +.+....+++ |...|..+.|.++++ .+++++.|++|+.||.++++. .+..+.
T Consensus 54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s-~i~S~gtDk~v~~wD~~tG~~-~rk~k~ 130 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGS-HILSCGTDKTVRGWDAETGKR-IRKHKG 130 (338)
T ss_pred EECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCC-EEEEecCCceEEEEeccccee-eehhcc
Confidence 489999999999999999999964 3344555665 778889999999998 799999999999999999985 677899
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743 80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 80 H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
|..-|+.++-+. ...++.+++.|+++++||+|+..+++++..+..++++.|..++..+++|+-|+.|++||++... ..
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-~~ 209 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-GL 209 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCc-ce
Confidence 999999998555 5567889999999999999999999999888999999999999999999999999999999873 44
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCc
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss 216 (633)
.++. +|..+|+.+..+|+|.++ ++.++|.++++||+||+.+..+
T Consensus 210 ~~ls--Gh~DtIt~lsls~~gs~l------------lsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 210 YTLS--GHADTITGLSLSRYGSFL------------LSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred EEee--cccCceeeEEeccCCCcc------------ccccccceEEEEEecccCCCCc
Confidence 5555 999999999999965554 5558899999999999999766
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.89 E-value=9.4e-23 Score=227.37 Aligned_cols=197 Identities=15% Similarity=0.229 Sum_probs=170.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc-------------------------------eeEEEeCCCCCcEEEEEEccCC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGA-------------------------------KAAELKDPNEQVLRVLDYSRNS 49 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk-------------------------------~v~~~~~~~~~~VssLafSpdg 49 (633)
.|+.|+.+||.|..|..|++|.+...+ ....+. .|.++|..+.|+|+.
T Consensus 385 ~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~-GH~GPVyg~sFsPd~ 463 (707)
T KOG0263|consen 385 EFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY-GHSGPVYGCSFSPDR 463 (707)
T ss_pred eecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee-cCCCceeeeeecccc
Confidence 378899999999999999999986311 112233 477788889999998
Q ss_pred CeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEE
Q 006743 50 RHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSL 128 (633)
Q Consensus 50 ~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsL 128 (633)
+ +|++++.|++|++|.+.+..+. ...++|..+|+++.|+|.|-+||+++.|++-++|......+.+++ +|-+.|.|+
T Consensus 464 r-fLlScSED~svRLWsl~t~s~~-V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv 541 (707)
T KOG0263|consen 464 R-FLLSCSEDSSVRLWSLDTWSCL-VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCV 541 (707)
T ss_pred c-ceeeccCCcceeeeecccceeE-EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceE
Confidence 8 9999999999999999999864 457799999999999999999999999999999999998888887 699999999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 129 AFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 129 afSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
.|+|+..|+++|+.|.+|++||+.++ ..++++. +|.++|++++|+|+|++|++ |+.|+.|++||+
T Consensus 542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VRiF~--GH~~~V~al~~Sp~Gr~LaS------------g~ed~~I~iWDl 606 (707)
T KOG0263|consen 542 SFHPNSNYVATGSSDRTVRLWDVSTG-NSVRIFT--GHKGPVTALAFSPCGRYLAS------------GDEDGLIKIWDL 606 (707)
T ss_pred EECCcccccccCCCCceEEEEEcCCC-cEEEEec--CCCCceEEEEEcCCCceEee------------cccCCcEEEEEc
Confidence 99999999999999999999999998 4567776 89999999999997666555 477999999999
Q ss_pred CCCCCCC
Q 006743 209 LPSVTTS 215 (633)
Q Consensus 209 r~~~~~s 215 (633)
.......
T Consensus 607 ~~~~~v~ 613 (707)
T KOG0263|consen 607 ANGSLVK 613 (707)
T ss_pred CCCcchh
Confidence 7644433
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.89 E-value=4.8e-22 Score=201.33 Aligned_cols=186 Identities=17% Similarity=0.197 Sum_probs=162.7
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V 84 (633)
|+.+|++++.|.+..+||+++++.+..|.+|..+ |.++.++|...+.|++|+.|+..+|||++.+.+ ++.+.+|...|
T Consensus 155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD-V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghesDI 232 (343)
T KOG0286|consen 155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGD-VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHESDI 232 (343)
T ss_pred CCCceEecCCCceEEEEEcccceEEEEecCCccc-EEEEecCCCCCCeEEecccccceeeeeccCcce-eEeeccccccc
Confidence 4668999999999999999999999999985555 566999994444899999999999999999875 78999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006743 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL 161 (633)
Q Consensus 85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h---~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l 161 (633)
+.++|.|+|.-|++|++|+++++||+|..+.+..+.+ ..+|++++|+..|++|++|..|..+.+||.-..+ .+..+
T Consensus 233 Nsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e-~vg~L 311 (343)
T KOG0286|consen 233 NSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE-RVGVL 311 (343)
T ss_pred ceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc-eEEEe
Confidence 9999999999999999999999999999998888854 4679999999999999999999999999998773 33444
Q ss_pred eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743 162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (633)
Q Consensus 162 ~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD 207 (633)
. +|...|.|+..+|||-.++++ +-|..++||.
T Consensus 312 ~--GHeNRvScl~~s~DG~av~Tg------------SWDs~lriW~ 343 (343)
T KOG0286|consen 312 A--GHENRVSCLGVSPDGMAVATG------------SWDSTLRIWA 343 (343)
T ss_pred e--ccCCeeEEEEECCCCcEEEec------------chhHheeecC
Confidence 4 999999999999966555554 5699999993
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.89 E-value=3.2e-22 Score=212.57 Aligned_cols=199 Identities=17% Similarity=0.283 Sum_probs=168.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------- 73 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~------- 73 (633)
+|+.+|..||+|..||.++||+. +|..+..+.. |+.+|..++|+.+|. +|++++.|+++.|||..++...
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~-HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s 318 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQ-HKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHS 318 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEec-Cchhhhhhhc-cCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeecc
Confidence 58999999999999999999996 6777777765 777888899999998 8999999999999998443211
Q ss_pred ---------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-
Q 006743 74 ---------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI- 119 (633)
Q Consensus 74 ---------------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i- 119 (633)
+.++.+|.+.|.++.|+|.+.+|++++.|++++||.+........+
T Consensus 319 ~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 319 APALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred CCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence 3456789999999999999999999999999999999888777766
Q ss_pred eCCCCeEEEEEecC---------CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743 120 TYEAPFSSLAFIDD---------DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (633)
Q Consensus 120 ~h~~~ItsLafSPd---------G~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd 190 (633)
.|...|+.+.|+|+ +..+++++.|++|++||+..+ .++..+. .|..+|++++|+|+|+++++
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~--kH~~pVysvafS~~g~ylAs------ 469 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLM--KHQEPVYSVAFSPNGRYLAS------ 469 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeec--cCCCceEEEEecCCCcEEEe------
Confidence 69999999999995 568999999999999999988 4555554 79999999999997666555
Q ss_pred CeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743 191 ETALLGGAVGDSILMPDPLPSVTTSSV 217 (633)
Q Consensus 191 ~~lLlSgs~Dg~IkIWDlr~~~~~ss~ 217 (633)
|+.|+.|.+|+.+...-..++
T Consensus 470 ------Gs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 470 ------GSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred ------cCCCCeeEeccccchheeEee
Confidence 477999999998766554443
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=9e-22 Score=218.44 Aligned_cols=198 Identities=21% Similarity=0.334 Sum_probs=164.9
Q ss_pred CccCCCCEEEEEECCCcEEEEEC-CCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 1 MYNCKDEHLASISLSGDLILHNL-ASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl-~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
+|+++|+++++++.|++|+|||+ ..+..++.+++ |...|++++|+|++ +++++|+.|++|+|||++++++ +..+.+
T Consensus 210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-H~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~-~~~l~~ 286 (456)
T KOG0266|consen 210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-HSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC-VRKLKG 286 (456)
T ss_pred EECCCCcEEEEecCCceEEEeeccCCCeEEEEecC-CCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE-EEeeec
Confidence 58999999999999999999999 55578888886 66778999999999 4999999999999999999774 788999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeeEe-eCCC--CeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCI-TYEA--PFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk--~v~~i-~h~~--~ItsLafSPdG~~LatGs~DGsV~IWDlrs~ 154 (633)
|...|.+++|++++++|++++.|+.|++||+.++. +...+ .+.. .+++++|+|++.+|++++.|+.|++||++..
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 99999999999999999999999999999999998 44444 3333 5999999999999999999999999999987
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 155 ~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
. ....+. +|...+.|+ |++. ...++.++++++.|+.|++||+.....
T Consensus 367 ~-~~~~~~--~~~~~~~~~-~~~~--------~~~~~~~i~sg~~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 367 K-SVGTYT--GHSNLVRCI-FSPT--------LSTGGKLIYSGSEDGSVYVWDSSSGGI 413 (456)
T ss_pred c-ceeeec--ccCCcceeE-eccc--------ccCCCCeEEEEeCCceEEEEeCCccch
Confidence 3 334444 565544222 2221 134778888889999999999975443
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=6.1e-22 Score=219.28 Aligned_cols=287 Identities=19% Similarity=0.301 Sum_probs=212.3
Q ss_pred CccCCCCEEEEEECC-CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 1 MYNCKDEHLASISLS-GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 1 AFSpdG~~LaSgs~D-G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
+||..|++||.|+.. |.+-||++.+...+.+.++ |...+.+++++|||+ ++++|++||+|+|||...+-| ..++..
T Consensus 314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC-~vTFte 390 (893)
T KOG0291|consen 314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFC-FVTFTE 390 (893)
T ss_pred EecccCCEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCCc-EEEeccCCCcEEEEeccCceE-EEEecc
Confidence 478889999998765 8999999999888888887 666788899999998 999999999999999998886 567899
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCC--eEEEEEecCCCEEEEEEcCCe-EEEEECCCCCC
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP--FSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQ 156 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~--ItsLafSPdG~~LatGs~DGs-V~IWDlrs~~k 156 (633)
|+..|+.+.|+..++.+++.+.||+|+.||+...+..+++....+ ..|++.+|.|..+.+|+.|.. |+||++.++ +
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-q 469 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-Q 469 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-e
Confidence 999999999999999999999999999999999999988865544 568888888999999998865 999999998 5
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccccccccCCCCCCccCCCC
Q 006743 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSA 236 (633)
Q Consensus 157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~s~a~sss~sslt~~ssG 236 (633)
.+.++. +|.++|.+++|+|.+.. |++++.|++|++||+-...... ..-.+.+..-..+..+.|
T Consensus 470 llDiLs--GHEgPVs~l~f~~~~~~------------LaS~SWDkTVRiW~if~s~~~v---Etl~i~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 470 LLDILS--GHEGPVSGLSFSPDGSL------------LASGSWDKTVRIWDIFSSSGTV---ETLEIRSDVLAVSFRPDG 532 (893)
T ss_pred eeehhc--CCCCcceeeEEccccCe------------EEeccccceEEEEEeeccCcee---eeEeeccceeEEEEcCCC
Confidence 566666 99999999999996554 5555679999999985432211 111112222222222222
Q ss_pred CCCccccCCCCCCCCcccccCCCCCcceeecCCCCCCCCCcccccCcccccC--cCCCCCcccccCCCCcc-ccCccCC-
Q 006743 237 EASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ--PITPSLDKLWDGHEGAK-KDHLPID- 312 (633)
Q Consensus 237 ~~ssi~~~st~e~tP~r~~l~~g~~l~~l~~~R~~~~~~dd~~vfsPl~dv~--p~~~s~~~~w~~~~g~~-~~~~~~~- 312 (633)
....+. .....+.+|.+-++++ .|+.- -|.-.|.+ .|.+-+.
T Consensus 533 ~elaVa------------------------------TldgqItf~d~~~~~q~~~Idgr----kD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 533 KELAVA------------------------------TLDGQITFFDIKEAVQVGSIDGR----KDLSGGRKETDRITAEN 578 (893)
T ss_pred CeEEEE------------------------------EecceEEEEEhhhceeeccccch----hhccccccccceeehhh
Confidence 211111 1112334444444333 23321 12223433 4666665
Q ss_pred ----Ccccccc-CCCCCCCccccCCCCceeeeeeccC
Q 006743 313 ----KKPSSML-FPSSSRRFPYAEDGSNEHSVFDWKS 344 (633)
Q Consensus 313 ----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (633)
+.++ +| | |++..+-.+...++-+||.|-..
T Consensus 579 sa~~K~Ft-ti~y-SaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 579 SAKGKTFT-TICY-SADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred cccCCceE-EEEE-cCCCCEEEecCCcccEEEEECch
Confidence 4555 66 7 99999999999999999998653
No 19
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=2.8e-21 Score=215.97 Aligned_cols=197 Identities=15% Similarity=0.279 Sum_probs=156.0
Q ss_pred CccC-CCCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743 1 MYNC-KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (633)
Q Consensus 1 AFSp-dG~~LaSgs~DG~I~IWDl~tgk-------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~ 72 (633)
+|+| ++++|++|+.||.|+|||+.++. .+..+.+ |...|.+|+|+|++.++|++|+.|++|+|||+.+...
T Consensus 82 ~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~ 160 (493)
T PTZ00421 82 AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA 160 (493)
T ss_pred EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE
Confidence 4888 78999999999999999997653 3556665 6678899999998766999999999999999988764
Q ss_pred eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCC-eEEEEEecCCCEEEEEE----cCCeE
Q 006743 73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAP-FSSLAFIDDDWILTAGT----SNGRV 146 (633)
Q Consensus 73 ~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~-ItsLafSPdG~~LatGs----~DGsV 146 (633)
+..+..|...|.+++|+|++.+|++++.|++|++||+++++.+..+ .|.+. +..+.|.+++..|++++ .|+.|
T Consensus 161 -~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 161 -VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred -EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 5677889999999999999999999999999999999999887766 45544 45778999888877654 47899
Q ss_pred EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743 147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (633)
Q Consensus 147 ~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~ 211 (633)
++||+++...++.... ..+...+....|++++.++ ++++..|+.|++||++..
T Consensus 240 klWDlr~~~~p~~~~~-~d~~~~~~~~~~d~d~~~L-----------~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 240 MLWDTRKMASPYSTVD-LDQSSALFIPFFDEDTNLL-----------YIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEeCCCCCCceeEec-cCCCCceEEEEEcCCCCEE-----------EEEEeCCCeEEEEEeeCC
Confidence 9999998766655443 1233455566677754333 333446999999999653
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.89 E-value=9.2e-22 Score=195.66 Aligned_cols=200 Identities=13% Similarity=0.190 Sum_probs=167.6
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEeccCCCCeE
Q 006743 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWLKQHSAPTA 85 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~-~v~~l~~H~~~Vt 85 (633)
-+|++++.|.+|++|...+|.+..+++ |....|+.+...|+++ .|++++. ..|++||+++..+ ++..+.+|...|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~-~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKK-DLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcc-hhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 378999999999999999999999998 4677789999999987 6766665 7799999987775 6889999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC
Q 006743 86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS 165 (633)
Q Consensus 86 sLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~ 165 (633)
.+.|..+|+++++|++||++||||+|...+.+.+.+..+|+++..+|+...|++|..+|.|++||+++.......+ +.
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li--Pe 165 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI--PE 165 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC--CC
Confidence 9999999999999999999999999998888888999999999999999999999999999999999763221222 23
Q ss_pred CCCCeeEEEEccCCCeEEEe------------------------------------ccCCCCeEEEEeeCCCeEEccCCC
Q 006743 166 SSEAVSSLCWQRAKPVFIDE------------------------------------TTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 166 H~~~VtsLafsPdg~~Las~------------------------------------s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
....|.++...|+|.+++.. ..+.+..+|++++.|.+++||...
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 44667777777777766632 235566777788888888888776
Q ss_pred CC
Q 006743 210 PS 211 (633)
Q Consensus 210 ~~ 211 (633)
.+
T Consensus 246 ~~ 247 (311)
T KOG0315|consen 246 DF 247 (311)
T ss_pred Cc
Confidence 65
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.89 E-value=4.6e-23 Score=215.82 Aligned_cols=193 Identities=17% Similarity=0.249 Sum_probs=163.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
.|.|+|+.|++|+..|.+.+|+...-. -..+...|...|+++.|++++. ++++|+.+|.|++|+..-.. ++.+..|
T Consensus 103 ~WtPeGRRLltgs~SGEFtLWNg~~fn-FEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmnn--Vk~~~ah 178 (464)
T KOG0284|consen 103 RWTPEGRRLLTGSQSGEFTLWNGTSFN-FETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMNN--VKIIQAH 178 (464)
T ss_pred EEcCCCceeEeecccccEEEecCceee-HHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccchhh--hHHhhHh
Confidence 389999999999999999999973221 1223345889999999999998 89999999999999987655 4556666
Q ss_pred C-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743 81 S-APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 81 ~-~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
. ..|++++|+|+...|++|++||+|+|||....+....+ +|...|.+++|+|....|++|+.|..|++||.+++. ++
T Consensus 179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~-cl 257 (464)
T KOG0284|consen 179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-CL 257 (464)
T ss_pred hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc-hh
Confidence 5 89999999999999999999999999999988776666 799999999999999999999999999999999984 44
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
..+. +|...|..+.|+++++ +|++++.|..++++|+|...
T Consensus 258 ~tlh--~HKntVl~~~f~~n~N------------~Llt~skD~~~kv~DiR~mk 297 (464)
T KOG0284|consen 258 ATLH--GHKNTVLAVKFNPNGN------------WLLTGSKDQSCKVFDIRTMK 297 (464)
T ss_pred hhhh--hccceEEEEEEcCCCC------------eeEEccCCceEEEEehhHhH
Confidence 4444 8999999999999654 45566889999999999433
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.88 E-value=1.6e-21 Score=194.05 Aligned_cols=196 Identities=12% Similarity=0.152 Sum_probs=164.7
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|..+|+++++|+.||+++|||++...+.+.++ +...|++|..+|+.. -|++|..+|.|+|||+....+....+....
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 78999999999999999999999866666666 568899999999977 689999999999999988866555566677
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce------eeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP------SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~------v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~ 154 (633)
..|.++...|||.+++.+...|.+++|++-+... +..+ .|.+.+..+.++||+++|++++.|.+|+||+.++.
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 8999999999999999999999999999876432 2222 58999999999999999999999999999999987
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (633)
Q Consensus 155 ~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ 214 (633)
-+....+. +|..++...+|+-+| .+|++++.|+.+++||+......
T Consensus 248 ~kle~~l~--gh~rWvWdc~FS~dg------------~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 248 FKLELVLT--GHQRWVWDCAFSADG------------EYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred eeeEEEee--cCCceEEeeeeccCc------------cEEEecCCCCceeecccccCcee
Confidence 33333444 899999999998854 45556677999999999765543
No 23
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.5e-22 Score=198.34 Aligned_cols=194 Identities=21% Similarity=0.277 Sum_probs=166.3
Q ss_pred CccCCC-CEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743 1 MYNCKD-EHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 1 AFSpdG-~~LaSgs~DG~I~IWDl~t-gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~ 78 (633)
+|+++. +.+++++.||.++|||+.. .+++..++. |...|.++.|++..+..+++++.|++|++||..-... +.+++
T Consensus 67 ~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-v~Tf~ 144 (311)
T KOG0277|consen 67 AWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-VQTFN 144 (311)
T ss_pred eecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-hhhheEEeccccccceeEEeeccCCceEeecCCCCcc-eEeec
Confidence 466654 5788899999999999643 346777775 6666778999998887899999999999999976663 78899
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-CceeeEeeCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCC
Q 006743 79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS-RRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 79 ~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrt-gk~v~~i~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~ 155 (633)
+|...|+..+|+| .+++|++++.|+++++||++. ++.+.+..|...|.|+.|+. +.++|++|+.|+.|++||+++..
T Consensus 145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR 224 (311)
T ss_pred CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc
Confidence 9999999999999 899999999999999999986 55555557889999999998 56788899999999999999998
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
.|+..+. +|.-.|..+.|+|. ...+|++++.|-+++|||..
T Consensus 225 ~pl~eL~--gh~~AVRkvk~Sph-----------~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 225 TPLFELN--GHGLAVRKVKFSPH-----------HASLLASASYDMTVRIWDPE 265 (311)
T ss_pred ccceeec--CCceEEEEEecCcc-----------hhhHhhhccccceEEecccc
Confidence 8888775 99999999999995 45567788999999999985
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.1e-21 Score=203.25 Aligned_cols=189 Identities=14% Similarity=0.261 Sum_probs=169.7
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|-|.|++|++++.|.+|++|++.++-++..+.+ |.+.|+.++.+.||. ++++++.|.+|++|-+.++.+ ...++.|.
T Consensus 201 f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~-h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~-k~~lR~hE 277 (406)
T KOG0295|consen 201 FLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG-HSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQC-KAELREHE 277 (406)
T ss_pred EEecCCeeeecccccceeEEecccceeEEeccC-chHhEEEEEecCCee-EEEecCCCceEEEEEeccchh-hhhhhccc
Confidence 567899999999999999999999999999997 667899999999998 999999999999999998875 35688999
Q ss_pred CCeEEEEEcCC---------------CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743 82 APTAGISFSSD---------------DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR 145 (633)
Q Consensus 82 ~~VtsLafSPd---------------g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGs 145 (633)
.+|.|++|.|. +.++.+++.|++|++||+.++.++.++ +|...|..++|+|.|+||+++..|++
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT 357 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc
Confidence 99999999763 258999999999999999999999887 79999999999999999999999999
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
+++||+++. ++.+.+. .|..-|++++|+.+ ..++++|+.|.++++|.-
T Consensus 358 lrvwdl~~~-~cmk~~~--ah~hfvt~lDfh~~------------~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 358 LRVWDLKNL-QCMKTLE--AHEHFVTSLDFHKT------------APYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEEeccc-eeeeccC--CCcceeEEEecCCC------------CceEEeccccceeeeeec
Confidence 999999988 5556666 78999999999984 346777799999999964
No 25
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=3.5e-23 Score=219.44 Aligned_cols=252 Identities=17% Similarity=0.190 Sum_probs=215.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|+.+|++|+.|+..|.|..+|+.+++..+++. ..+.|+++.|..+.+ +++......++|||-.+.+ +++++.|
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq--~~AVAQK~y~yvYD~~GtE--lHClk~~- 209 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQ--FFAVAQKKYVYVYDNNGTE--LHCLKRH- 209 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchH--HHHhhhhceEEEecCCCcE--Eeehhhc-
Confidence 67899999999999999999999999999887 567889999998876 5566788999999998877 7888887
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~ 160 (633)
..|..+.|.|...+|++++..|.+++.|+.+|+.+..+ ...+.+..|+.+|.+.++-+|..+|+|.+|........+++
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 56999999999999999999999999999999999887 46788999999999999999999999999999988666666
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccccccccC---CCCCCccCCCCC
Q 006743 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSG---SRPNSRSGPSAE 237 (633)
Q Consensus 161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~s~a~ss---s~sslt~~ssG~ 237 (633)
++ |.++|.+|+++++|+ ++++.+.|+.|+|||+|.+..+.++.++.+... ++..+.+.+.|.
T Consensus 290 Lc---H~g~V~siAv~~~G~------------YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~ 354 (545)
T KOG1272|consen 290 LC---HRGPVSSIAVDRGGR------------YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGD 354 (545)
T ss_pred Hh---cCCCcceEEECCCCc------------EEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCC
Confidence 65 999999999999554 555567899999999999998777766444433 566777888888
Q ss_pred CCccccCC----CCCCCCcccccCCCCCcceeecCCCCCCCCCcccccCcccccCcC
Q 006743 238 ASSLTVGG----TGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPI 290 (633)
Q Consensus 238 ~ssi~~~s----t~e~tP~r~~l~~g~~l~~l~~~R~~~~~~dd~~vfsPl~dv~p~ 290 (633)
...++... ...++||++|...+ ++..|+ |||++||==|
T Consensus 355 ~v~iw~d~~~~s~~~~~pYm~H~~~~-~V~~l~--------------FcP~EDvLGI 396 (545)
T KOG1272|consen 355 HVQIWKDALKGSGHGETPYMNHRCGG-PVEDLR--------------FCPYEDVLGI 396 (545)
T ss_pred eeeeehhhhcCCCCCCcchhhhccCc-ccccce--------------eccHHHeeec
Confidence 88776543 35789999999885 888888 8999997544
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.1e-21 Score=213.62 Aligned_cols=197 Identities=16% Similarity=0.252 Sum_probs=175.6
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~ 82 (633)
-..-+++++|+.|..|+||+.++++.+..|.. |.+-|++|+.+|... +++++++|-+|++||.+..-...+++.+|..
T Consensus 64 iaRknWiv~GsDD~~IrVfnynt~ekV~~FeA-H~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 64 IARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA-HSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEH 141 (794)
T ss_pred eeccceEEEecCCceEEEEecccceeeEEeec-cccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence 34467899999999999999999999999997 778899999999998 8999999999999999887766889999999
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCC--CEEEEEEcCCeEEEEECCCCCCce
Q 006743 83 PTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDD--WILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 83 ~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG--~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
.|.+++|+| |.+.|++++-|++|++|.+....+..++ +|...|+|+++-+.| -+|++|+.|.+|+|||..+. .++
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV 220 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCV 220 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHH
Confidence 999999999 9999999999999999999998887777 699999999998844 69999999999999999987 667
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCc
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss 216 (633)
.++. +|...|..++|+|. -.++++|+.||+++||+-..|.--..
T Consensus 221 ~TLe--GHt~Nvs~v~fhp~------------lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 221 QTLE--GHTNNVSFVFFHPE------------LPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred HHhh--cccccceEEEecCC------------CcEEEEecCCccEEEecCcceehhhh
Confidence 7777 89999999999995 44566668899999998876654443
No 27
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.3e-21 Score=219.61 Aligned_cols=191 Identities=19% Similarity=0.268 Sum_probs=150.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC--------------------------------C-----------------------
Q 006743 2 YNCKDEHLASISLSGDLILHNLAS--------------------------------G----------------------- 26 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~t--------------------------------g----------------------- 26 (633)
|++||+|||+||.||.|+||.+.. .
T Consensus 275 FS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~ 354 (712)
T KOG0283|consen 275 FSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKA 354 (712)
T ss_pred eCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcc
Confidence 899999999999999999998754 0
Q ss_pred -----ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEe
Q 006743 27 -----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVG 100 (633)
Q Consensus 27 -----k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS 100 (633)
++++.|.+ |..-|-+|.|+.++ +|++++.|++|+||++....+ ..+..|...|+||+|+| |.++|++|+
T Consensus 355 f~f~ekP~~ef~G-Ht~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~C--L~~F~HndfVTcVaFnPvDDryFiSGS 429 (712)
T KOG0283|consen 355 FVFSEKPFCEFKG-HTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKEC--LKVFSHNDFVTCVAFNPVDDRYFISGS 429 (712)
T ss_pred ccccccchhhhhc-cchhheecccccCC--eeEeccccccEEeecCCCcce--eeEEecCCeeEEEEecccCCCcEeecc
Confidence 01224444 44456679999875 799999999999999987774 34678999999999999 999999999
Q ss_pred CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC------CCCeeEEE
Q 006743 101 LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS------SEAVSSLC 174 (633)
Q Consensus 101 ~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H------~~~VtsLa 174 (633)
-||.|+||++...+.+.......-|++++|.|||++.++|+.+|.+++|+.+..+ .........| ...|+++.
T Consensus 430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk-~~~~~~I~~~~~Kk~~~~rITG~Q 508 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK-LVSDFHIRLHNKKKKQGKRITGLQ 508 (712)
T ss_pred cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe-EEEeeeEeeccCccccCceeeeeE
Confidence 9999999999998888887788999999999999999999999999999998763 2222221111 23799999
Q ss_pred EccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 175 fsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
|.|... . .++..+.|..|+|+|.+
T Consensus 509 ~~p~~~----------~-~vLVTSnDSrIRI~d~~ 532 (712)
T KOG0283|consen 509 FFPGDP----------D-EVLVTSNDSRIRIYDGR 532 (712)
T ss_pred ecCCCC----------C-eEEEecCCCceEEEecc
Confidence 998421 1 23333447777777773
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.88 E-value=1.8e-20 Score=183.83 Aligned_cols=192 Identities=20% Similarity=0.318 Sum_probs=162.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
+|++++++|++++.||.|++|++.+++....+.. +...+..+.|.++++ +|++++.||.|++||+...+. ...+..|
T Consensus 16 ~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~-~~~~~~~ 92 (289)
T cd00200 16 AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGEC-VRTLTGH 92 (289)
T ss_pred EEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCC-EEEEEcCCCeEEEEEcCcccc-eEEEecc
Confidence 4789999999999999999999998887777765 556677799999986 799999999999999987653 5667789
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~ 159 (633)
...|.+++|+++++++++++.|+.|++||+++++....+. |...+.+++|+|++.++++++.||.|++||++.. ++..
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~ 171 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVA 171 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccce
Confidence 8899999999998889988889999999999888777664 8889999999999999999888999999999866 3344
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
.+. .|...|.+++|+|+++.++ .++.|+.|++||++.
T Consensus 172 ~~~--~~~~~i~~~~~~~~~~~l~------------~~~~~~~i~i~d~~~ 208 (289)
T cd00200 172 TLT--GHTGEVNSVAFSPDGEKLL------------SSSSDGTIKLWDLST 208 (289)
T ss_pred eEe--cCccccceEEECCCcCEEE------------EecCCCcEEEEECCC
Confidence 444 6888999999999654443 334589999999865
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.9e-21 Score=190.82 Aligned_cols=202 Identities=17% Similarity=0.275 Sum_probs=172.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|+-+|+|.++++.|.+|++||...+.+++++.+ |+..|..++.+.|+. .|++|+.|+.|.+||+.+++. .+.+.+|.
T Consensus 25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~TGkv-~Rr~rgH~ 101 (307)
T KOG0316|consen 25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNS-KFASCGGDKAVQVWDVNTGKV-DRRFRGHL 101 (307)
T ss_pred EccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeecccccccc-ccccCCCCceEEEEEcccCee-eeeccccc
Confidence 789999999999999999999999999999997 667778888888877 799999999999999999984 78899999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg--k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
+.|+.++|+.+...+++|+.|.++++||.|+. ++++++ .....|.++... +..|++|+.||+++.||+|.+.
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~--- 176 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT--- 176 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce---
Confidence 99999999999999999999999999999864 566766 467889998886 6789999999999999999873
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEec--------------------------------cCCCCeEEEEeeCCCeEEcc
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDET--------------------------------TCKAETALLGGAVGDSILMP 206 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s--------------------------------~~sd~~lLlSgs~Dg~IkIW 206 (633)
... -.-..+|++++|+++++..+.++ -......+++|+.||.|.+|
T Consensus 177 -l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 177 -LSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred -eeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence 111 13457899999999999876432 22345578999999999999
Q ss_pred CCCCCCC
Q 006743 207 DPLPSVT 213 (633)
Q Consensus 207 Dlr~~~~ 213 (633)
|+.....
T Consensus 255 dLvd~~~ 261 (307)
T KOG0316|consen 255 DLVDETQ 261 (307)
T ss_pred Eecccee
Confidence 9965443
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.88 E-value=8.5e-21 Score=223.75 Aligned_cols=192 Identities=18% Similarity=0.293 Sum_probs=160.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC----c----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASG----A----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tg----k----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~ 72 (633)
+|+++|++||+|+.|+.|+|||+... . .+..+. +...+.+++|++....+|++++.||+|+|||+.+.+.
T Consensus 490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~ 567 (793)
T PLN00181 490 GFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL 567 (793)
T ss_pred EECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 48999999999999999999997532 1 122232 2356788999986555899999999999999987763
Q ss_pred eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEe-cCCCEEEEEEcCCeEEEEE
Q 006743 73 KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFI-DDDWILTAGTSNGRVVFYD 150 (633)
Q Consensus 73 ~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafS-PdG~~LatGs~DGsV~IWD 150 (633)
+..+.+|...|++++|+| ++.+|++|+.|++|++||++++..+..+.+...|.++.|+ +++.+|++|+.||.|++||
T Consensus 568 -~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD 646 (793)
T PLN00181 568 -VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYD 646 (793)
T ss_pred -EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 567889999999999997 8899999999999999999999888887777789999996 4799999999999999999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
+++...++..+. +|...|.++.|.+ +.++++++.|+.|++||++.
T Consensus 647 ~~~~~~~~~~~~--~h~~~V~~v~f~~-------------~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 647 LRNPKLPLCTMI--GHSKTVSYVRFVD-------------SSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred CCCCCccceEec--CCCCCEEEEEEeC-------------CCEEEEEECCCEEEEEeCCC
Confidence 998654454444 7999999999952 23567778899999999864
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=3.6e-21 Score=213.30 Aligned_cols=198 Identities=15% Similarity=0.256 Sum_probs=169.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
+|+|||+++|+|+.||+|+|||...+-+..+|.. |...|+.++|...++ .+++.+-||+|+.||+.............
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~ 434 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPE 434 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCC
Confidence 5899999999999999999999999999999986 677889999999997 89999999999999997766433222233
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743 81 SAPTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DG-tVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
...-.|++..|.|.+++.|+.|. .|++|++++|+.+-.+ +|+++|.+++|+|++..|++++.|.+|++||+-.....+
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV 514 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence 44568899999999999999998 6999999999999888 799999999999999999999999999999998765555
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCC
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS 215 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~s 215 (633)
..+. +..-+..++|.|+|+.|+.. ..||.|.+||+.......
T Consensus 515 Etl~---i~sdvl~vsfrPdG~elaVa------------TldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 515 ETLE---IRSDVLAVSFRPDGKELAVA------------TLDGQITFFDIKEAVQVG 556 (893)
T ss_pred eeEe---eccceeEEEEcCCCCeEEEE------------EecceEEEEEhhhceeec
Confidence 5555 77889999999987766554 569999999997655543
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1e-20 Score=190.10 Aligned_cols=194 Identities=15% Similarity=0.224 Sum_probs=162.8
Q ss_pred CccCC-CCEEEEEECCCcEEEEECCCC---ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeE
Q 006743 1 MYNCK-DEHLASISLSGDLILHNLASG---AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVS 75 (633)
Q Consensus 1 AFSpd-G~~LaSgs~DG~I~IWDl~tg---k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-~~v~ 75 (633)
||+|- |..||+|+.|..|+||+...+ .+...+...|...|+.++|+|.|+ +|++|+.|.++.||.-...+ ..+.
T Consensus 21 awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv~ 99 (312)
T KOG0645|consen 21 AWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFECVA 99 (312)
T ss_pred EeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeEEe
Confidence 57887 889999999999999998743 344556667889999999999998 99999999999999886544 2377
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP---SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~---v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl 151 (633)
.+.+|...|.|++|+++|++||+|++|+.|.||.+..+.. ...+ .|...|..+.|+|....|++++.|.+|++|+-
T Consensus 100 ~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~ 179 (312)
T KOG0645|consen 100 TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRD 179 (312)
T ss_pred eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEee
Confidence 8999999999999999999999999999999999985543 3344 59999999999999999999999999999987
Q ss_pred CCCC--CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 152 RGKP--QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 152 rs~~--k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
.... .++..+. +|...|.+++|++.|. .|++++.|++++||..+
T Consensus 180 ~~dddW~c~~tl~--g~~~TVW~~~F~~~G~------------rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 180 EDDDDWECVQTLD--GHENTVWSLAFDNIGS------------RLVSCSDDGTVSIWRLY 225 (312)
T ss_pred cCCCCeeEEEEec--CccceEEEEEecCCCc------------eEEEecCCcceEeeeec
Confidence 7332 2344444 8999999999999654 45555789999999765
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=1.7e-20 Score=184.08 Aligned_cols=188 Identities=21% Similarity=0.398 Sum_probs=160.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|+++++++++++.||.|++||+.+++....+.. +...+.+++|++++. ++++++.|+.|++||+...+. ...+..|.
T Consensus 101 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~ 177 (289)
T cd00200 101 FSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKC-VATLTGHT 177 (289)
T ss_pred EcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEcccccc-ceeEecCc
Confidence 677888888888899999999998888888874 566789999999976 788877799999999987664 55677888
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~ 160 (633)
..|.+++|+|+++.+++++.|+.|++||++.++.+..+ .+...+.+++|+|++.++++++.||.|++||+++. .+...
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~~ 256 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQT 256 (289)
T ss_pred cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEEE
Confidence 89999999999999999999999999999998888877 78889999999999888888888999999999875 34444
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (633)
Q Consensus 161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD 207 (633)
+. .|...|.+++|+++++ ++++++.|+.+++||
T Consensus 257 ~~--~~~~~i~~~~~~~~~~------------~l~~~~~d~~i~iw~ 289 (289)
T cd00200 257 LS--GHTNSVTSLAWSPDGK------------RLASGSADGTIRIWD 289 (289)
T ss_pred cc--ccCCcEEEEEECCCCC------------EEEEecCCCeEEecC
Confidence 44 7888999999999544 455557799999996
No 34
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1e-21 Score=209.55 Aligned_cols=202 Identities=19% Similarity=0.247 Sum_probs=173.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|..||++||.|+..|.|+|||..+...+..+.. |..++..+.|+|++...|++|++|+.+++||+.+... ...+.+|+
T Consensus 76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a-h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~ht 153 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYA-HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHT 153 (487)
T ss_pred eecCCeEEEccCCcCcEEEeccccHHHHHHHhh-ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCc
Confidence 678999999999999999999766556667765 7788999999999998999999999999999998874 56789999
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743 82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (633)
Q Consensus 82 ~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtg-k~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~ 159 (633)
+.|.|.+|+| ++.++++|+.||+|++||++.. ..+..+.|+.+|..+.+-|.|..|++++. ..|+|||+-++.+.+.
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT 232 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh
Confidence 9999999999 7779999999999999999987 77788899999999999999999998876 5699999997654333
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCccccc
Q 006743 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLS 220 (633)
Q Consensus 160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~s 220 (633)
... .|...|+|+++.. ++..|++++-|+.|++||+..+....+..-+
T Consensus 233 ~~~--~H~KtVTcL~l~s------------~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~ 279 (487)
T KOG0310|consen 233 SMF--NHNKTVTCLRLAS------------DSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP 279 (487)
T ss_pred hhh--cccceEEEEEeec------------CCceEeecccccceEEEEccceEEEEeeecc
Confidence 332 5999999999876 4577888899999999998888776655444
No 35
>PTZ00420 coronin; Provisional
Probab=99.87 E-value=2.8e-20 Score=210.04 Aligned_cols=195 Identities=12% Similarity=0.185 Sum_probs=150.9
Q ss_pred CccCC-CCEEEEEECCCcEEEEECCCCc--------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC
Q 006743 1 MYNCK-DEHLASISLSGDLILHNLASGA--------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS 71 (633)
Q Consensus 1 AFSpd-G~~LaSgs~DG~I~IWDl~tgk--------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~ 71 (633)
+|+|+ +++|++|+.||.|+|||+.++. .+..+.+ |...|.+++|+|++..+|++++.|++|+|||+++..
T Consensus 81 afsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~ 159 (568)
T PTZ00420 81 QFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159 (568)
T ss_pred EEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc
Confidence 48886 7899999999999999997642 2334554 667899999999988677899999999999999877
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEE-----EEEecCCCEEEEEEcCC-
Q 006743 72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSS-----LAFIDDDWILTAGTSNG- 144 (633)
Q Consensus 72 ~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~Its-----LafSPdG~~LatGs~DG- 144 (633)
. +..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+ .|.+.+.+ ..|++++.+|++++.|+
T Consensus 160 ~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~ 237 (568)
T PTZ00420 160 R-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN 237 (568)
T ss_pred E-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence 4 33343 6678999999999999999999999999999999888766 57665433 23458889999988774
Q ss_pred ---eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 145 ---RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 145 ---sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
.|+|||+++...++..+....+.+.+.. .|.+ +++.++++|..|+.|++|++..
T Consensus 238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p-~~D~-----------~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVTMSIDNASAPLIP-HYDE-----------STGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CccEEEEEECCCCCCceEEEEecCCccceEE-eeeC-----------CCCCEEEEEECCCeEEEEEccC
Confidence 7999999976566665543233332222 2222 3577788888999999999964
No 36
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.86 E-value=2.6e-21 Score=206.27 Aligned_cols=190 Identities=17% Similarity=0.291 Sum_probs=162.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
+|+.+|..+++++.|+.|++||+++|+++..+. .+.++.|+.|+|++.++|++|+.|+.|+.||++.++ .++.+..|
T Consensus 265 ~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~h 341 (503)
T KOG0282|consen 265 SFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRH 341 (503)
T ss_pred hccccCCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhh
Confidence 589999999999999999999999999999887 567889999999998899999999999999999998 47778889
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-----------------------------------------
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----------------------------------------- 119 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i----------------------------------------- 119 (633)
-+.|..+.|-++++++++.++|+.++||+.+.+.++..+
T Consensus 342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 999999999999999999999999999997654322111
Q ss_pred ------eC--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCC
Q 006743 120 ------TY--EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAE 191 (633)
Q Consensus 120 ------~h--~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~ 191 (633)
+| .+.-..+.|+|||.+|++|..||.|.+||.++. +.+..+. +|.+++..+.|+|. ..
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lk--ah~~~ci~v~wHP~-----------e~ 487 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLK--AHDQPCIGVDWHPV-----------EP 487 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccc--cCCcceEEEEecCC-----------Cc
Confidence 01 123446889999999999999999999999987 4455555 78999999999995 34
Q ss_pred eEEEEeeCCCeEEccC
Q 006743 192 TALLGGAVGDSILMPD 207 (633)
Q Consensus 192 ~lLlSgs~Dg~IkIWD 207 (633)
..+++++.||.|++||
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 4567777899999997
No 37
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.86 E-value=1.5e-20 Score=199.85 Aligned_cols=189 Identities=23% Similarity=0.371 Sum_probs=160.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce-----------------------------------------eEEEeCCCCCcE
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAK-----------------------------------------AAELKDPNEQVL 40 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~-----------------------------------------v~~~~~~~~~~V 40 (633)
|+.+|.||++++.||++.+||..++.. +.++.+ |...|
T Consensus 284 Wnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V 362 (524)
T KOG0273|consen 284 WNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEV 362 (524)
T ss_pred EcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec-ccCce
Confidence 788999999999999999999855432 223444 66678
Q ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCC---------CEEEEEeCCCeEEEEeCC
Q 006743 41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD---------KIIASVGLDKKLYTYDPG 111 (633)
Q Consensus 41 ssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg---------~~LaSgS~DGtVrIWDlr 111 (633)
.+|.|+|.+. +|+++++|++++||....... .+.+..|...|+.+.|+|.+ ..+++++.|++|++||+.
T Consensus 363 ~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~-~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 363 NALKWNPTGS-LLASCSDDGTLKIWSMGQSNS-VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred EEEEECCCCc-eEEEecCCCeeEeeecCCCcc-hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 8999999998 999999999999999866553 67899999999999998854 479999999999999999
Q ss_pred CCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743 112 SRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (633)
Q Consensus 112 tgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd 190 (633)
.+.++..+ .|..+|++++|+|+|+++|+|+.||.|++|+++.. +.++.+...+.|..++|+.+|.+|..+
T Consensus 441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~----~l~~s~~~~~~Ifel~Wn~~G~kl~~~----- 511 (524)
T KOG0273|consen 441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG----KLVKSYQGTGGIFELCWNAAGDKLGAC----- 511 (524)
T ss_pred CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch----heeEeecCCCeEEEEEEcCCCCEEEEE-----
Confidence 99999988 89999999999999999999999999999999988 344445567889999999876555444
Q ss_pred CeEEEEeeCCCeEEccCCC
Q 006743 191 ETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 191 ~~lLlSgs~Dg~IkIWDlr 209 (633)
..|+.+++-|+|
T Consensus 512 -------~sd~~vcvldlr 523 (524)
T KOG0273|consen 512 -------ASDGSVCVLDLR 523 (524)
T ss_pred -------ecCCCceEEEec
Confidence 558888888876
No 38
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=5.6e-20 Score=207.65 Aligned_cols=188 Identities=15% Similarity=0.162 Sum_probs=145.7
Q ss_pred EECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-------eeEEeccCCCCe
Q 006743 12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-------KVSWLKQHSAPT 84 (633)
Q Consensus 12 gs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~-------~v~~l~~H~~~V 84 (633)
|+.++.|++|+......+..+.+ |...|.+++|+|+..++|++|+.||+|+|||+..... .+..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 45577899999877777777776 6678899999998545999999999999999975321 234578899999
Q ss_pred EEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006743 85 AGISFSSDDKI-IASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163 (633)
Q Consensus 85 tsLafSPdg~~-LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~ 163 (633)
.+++|+|++.. |++++.|++|++||+++++.+..+.+...|.+++|+|+|.+|++++.|+.|+|||++++. .+..+.
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-~i~tl~- 206 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-IASSFH- 206 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-EEEEEe-
Confidence 99999997765 578999999999999999887777777889999999999999999999999999999873 344444
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCC----CeEEccCCCC
Q 006743 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVG----DSILMPDPLP 210 (633)
Q Consensus 164 ~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~D----g~IkIWDlr~ 210 (633)
+|.+.+.+..+... +...++.++++++.| +.|+|||++.
T Consensus 207 -gH~g~~~s~~v~~~-------~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 207 -IHDGGKNTKNIWID-------GLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred -cccCCceeEEEEee-------eEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 78776654433210 011233444544444 4899999985
No 39
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.8e-21 Score=212.30 Aligned_cols=200 Identities=18% Similarity=0.291 Sum_probs=163.5
Q ss_pred CCCEEEEEECCCcEEEEECCC---CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 5 KDEHLASISLSGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~t---gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
+.++||+++..|.|.+||+.. .+.+..|.. |...+.+++|++...++|++|++||+|++||++..+. ..++.+..
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E-H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~~~nS 176 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE-HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTFRSNS 176 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhh-hccceeeeeeccCCccEEEecCCCceEEEEeeecccc-cccccccc
Confidence 356899999999999999976 445555554 7778899999999999999999999999999988774 56677788
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCc
Q 006743 82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQP 157 (633)
Q Consensus 82 ~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtg-k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~-~k~ 157 (633)
..|++|+|+| .+++|+++.+.|.|.+||+|.. ++...+ +|.++|.|+.|+|++.+||+|+.|+.|+|||+... .++
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence 8999999999 8999999999999999999974 344333 79999999999999999999999999999999853 344
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeC--CCeEEccCCC-CCCCCCccccc
Q 006743 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAV--GDSILMPDPL-PSVTTSSVSLS 220 (633)
Q Consensus 158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~--Dg~IkIWDlr-~~~~~ss~s~s 220 (633)
..++. -..+|.+|.|-|..++ .|.+++. |-.|.|||++ ||.|-..+...
T Consensus 257 ~~tIn---Tiapv~rVkWRP~~~~-----------hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH 308 (839)
T KOG0269|consen 257 KHTIN---TIAPVGRVKWRPARSY-----------HLATCSMVVDTSVHVWDVRRPYIPYATFLEH 308 (839)
T ss_pred eeEEe---ecceeeeeeeccCccc-----------hhhhhhccccceEEEEeeccccccceeeecc
Confidence 44444 4578999999997543 2333333 8899999996 77776665554
No 40
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=1e-19 Score=203.45 Aligned_cols=197 Identities=16% Similarity=0.196 Sum_probs=150.7
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCcee-------------EEEeCCCCCcEEEEEEcc-CCCeEEEEEeCCCeEEEEECC
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKA-------------AELKDPNEQVLRVLDYSR-NSRHLLVTAGDDGTLHLWDTT 68 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v-------------~~~~~~~~~~VssLafSp-dg~~lLaSGs~DGtI~IWDl~ 68 (633)
++++..+++++.+..+..|+...+..+ ..+. +|...|.+++|+| ++. +|++|+.|++|+|||+.
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~ 106 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIP 106 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecC
Confidence 456566666666666667765443222 1244 3677899999999 555 89999999999999997
Q ss_pred CCC------ceeEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEE
Q 006743 69 GRS------PKVSWLKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAG 140 (633)
Q Consensus 69 t~~------~~v~~l~~H~~~VtsLafSPd-g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatG 140 (633)
... ..+..+.+|...|.+++|+|+ +++|++++.|++|+|||+++++.+..+ .|...|.+++|+|+|.+|+++
T Consensus 107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatg 186 (493)
T PTZ00421 107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT 186 (493)
T ss_pred CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEe
Confidence 542 235678899999999999996 479999999999999999999887776 488999999999999999999
Q ss_pred EcCCeEEEEECCCCCCceEEEeecCCCCC-eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 141 TSNGRVVFYDIRGKPQPLTVLRACSSSEA-VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 141 s~DGsV~IWDlrs~~k~v~~l~~~~H~~~-VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
+.|+.|+|||++++. .+..+. +|.+. +..+.|.+++..+++++. +.+.|+.|++||++...
T Consensus 187 s~Dg~IrIwD~rsg~-~v~tl~--~H~~~~~~~~~w~~~~~~ivt~G~--------s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 187 SKDKKLNIIDPRDGT-IVSSVE--AHASAKSQRCLWAKRKDLIITLGC--------SKSQQRQIMLWDTRKMA 248 (493)
T ss_pred cCCCEEEEEECCCCc-EEEEEe--cCCCCcceEEEEcCCCCeEEEEec--------CCCCCCeEEEEeCCCCC
Confidence 999999999999874 344444 66654 456778886555544311 12358999999998644
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.85 E-value=8.9e-20 Score=196.06 Aligned_cols=182 Identities=20% Similarity=0.341 Sum_probs=148.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------ 73 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~--~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~------ 73 (633)
|+|||.++|+++.||+|.|||-.+|+.+.++.. .|.+.|.+|.|+||+. .|++++.|++++|||+.+.+..
T Consensus 198 ysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 198 YSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred ECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecC
Confidence 899999999999999999999999999999872 4778899999999998 7999999999999999765422
Q ss_pred ------------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 006743 74 ------------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS 117 (633)
Q Consensus 74 ------------------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~ 117 (633)
.+.+.+|...|+++..++++++|++|+.||.|.-||..++..-+
T Consensus 277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence 22467899999999999999999999999999999984332100
Q ss_pred -------------------------------Ee-----------------------------------------------
Q 006743 118 -------------------------------CI----------------------------------------------- 119 (633)
Q Consensus 118 -------------------------------~i----------------------------------------------- 119 (633)
.+
T Consensus 357 ~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~ 436 (603)
T KOG0318|consen 357 LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK 436 (603)
T ss_pred cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc
Confidence 00
Q ss_pred ----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 120 ----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 120 ----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
.......+++++|++..+++|+.||.|+||.+..... ........|.++|++++|+|++.||+++
T Consensus 437 ~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 437 VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAAG 505 (603)
T ss_pred ceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEEe
Confidence 0011133678999999999999999999999987542 2233334799999999999999888855
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.85 E-value=1.4e-19 Score=213.38 Aligned_cols=190 Identities=20% Similarity=0.356 Sum_probs=155.0
Q ss_pred ccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 2 FSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
|++ ++.+|++++.||.|+|||+.+++.+..+.+ |...|.+++|+|.+..+|++|+.||+|++||+..... +..+..+
T Consensus 540 ~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~ 617 (793)
T PLN00181 540 WNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK 617 (793)
T ss_pred eccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC
Confidence 554 478999999999999999999988888876 6677899999974334899999999999999987764 4445544
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-eeeE-eeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC--
Q 006743 81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSC-ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP-- 155 (633)
Q Consensus 81 ~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk-~v~~-i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~-- 155 (633)
..|.++.|++ ++.+|++|+.|+.|++||+++.+ .+.. .+|...|.+++|. ++.+|++++.|+.|+|||++...
T Consensus 618 -~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 618 -ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred -CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 6799999965 89999999999999999998765 3333 3688999999997 78899999999999999998531
Q ss_pred ---CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 156 ---QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 156 ---k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
.++..+. +|...+.+++|++++. ++++++.|+.|++|+..
T Consensus 696 ~~~~~l~~~~--gh~~~i~~v~~s~~~~------------~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 696 INETPLHSFM--GHTNVKNFVGLSVSDG------------YIATGSETNEVFVYHKA 738 (793)
T ss_pred cCCcceEEEc--CCCCCeeEEEEcCCCC------------EEEEEeCCCEEEEEECC
Confidence 3444444 7999999999999654 45555779999999865
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.85 E-value=1.4e-21 Score=201.16 Aligned_cols=182 Identities=19% Similarity=0.303 Sum_probs=158.2
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--eeEEeccCC
Q 006743 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--KVSWLKQHS 81 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~--~v~~l~~H~ 81 (633)
.+.+.|++|+.|.+|+|||+++++++..+-. |.+.|-.+.|+.. ++++++.|.+|.|||+..... ..+.+.+|.
T Consensus 245 yd~rviisGSSDsTvrvWDv~tge~l~tlih-HceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr 320 (499)
T KOG0281|consen 245 YDERVIVSGSSDSTVRVWDVNTGEPLNTLIH-HCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 320 (499)
T ss_pred ccceEEEecCCCceEEEEeccCCchhhHHhh-hcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhhhh
Confidence 4567889999999999999999999988874 6666777888743 899999999999999976542 245678999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~ 160 (633)
..|+.+.|+ .++|++++.|.+|++|++.++..++++ +|...|.|+.+. ++++++|+.|.+|++||+..+ .++++
T Consensus 321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G-~cLRv 395 (499)
T KOG0281|consen 321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-ACLRV 395 (499)
T ss_pred hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEecccc-HHHHH
Confidence 999999997 679999999999999999999999988 699999999885 889999999999999999988 56677
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
+. +|..-|.|+.|+ ...+++|+.||+|+|||+..
T Consensus 396 Le--GHEeLvRciRFd--------------~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 396 LE--GHEELVRCIRFD--------------NKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred Hh--chHHhhhheeec--------------CceeeeccccceEEEEeccc
Confidence 77 899999999994 45788889999999999854
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=8e-21 Score=196.92 Aligned_cols=199 Identities=15% Similarity=0.181 Sum_probs=171.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 1 MYNCKDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~t-gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
+|+..|++||+++.|=.+++||..+ .++++...+ |...|.+++|-|.|. +|++++.|.+|++|++.++.+ +.++.+
T Consensus 157 ~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-h~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~c-v~t~~~ 233 (406)
T KOG0295|consen 157 SFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-HEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYC-VKTFPG 233 (406)
T ss_pred EEecCccEEEecCCccchhheeHHHHHHHHHHhcC-cccceeeEEEEecCC-eeeecccccceeEEeccccee-EEeccC
Confidence 3778899999999999999999876 345555554 778899999999997 899999999999999999886 688999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecC---------------CCEEEEEEcC
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD---------------DWILTAGTSN 143 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPd---------------G~~LatGs~D 143 (633)
|...|.-++.+.||.++++++.|.+|++|-+.++++...+ .|+.+|.|++|.|. +.++++++.|
T Consensus 234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 9999999999999999999999999999999999887777 69999999999883 3589999999
Q ss_pred CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743 144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (633)
Q Consensus 144 GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~ 217 (633)
++|++||+.++. ++..+. +|..+|..++|+|.|+||++ +..|+++++||++...+....
T Consensus 314 ktIk~wdv~tg~-cL~tL~--ghdnwVr~~af~p~Gkyi~S------------caDDktlrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 314 KTIKIWDVSTGM-CLFTLV--GHDNWVRGVAFSPGGKYILS------------CADDKTLRVWDLKNLQCMKTL 372 (406)
T ss_pred ceEEEEeccCCe-EEEEEe--cccceeeeeEEcCCCeEEEE------------EecCCcEEEEEeccceeeecc
Confidence 999999999984 344444 89999999999996655555 477999999999876654443
No 45
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.5e-20 Score=201.21 Aligned_cols=204 Identities=18% Similarity=0.293 Sum_probs=165.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
.|+++|.+|++|..+|.|.|||..+.+.+..+.++|...|.+++|+. +.+.+|+.|+.|..+|++..+..+..+.+|
T Consensus 224 ~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H 300 (484)
T KOG0305|consen 224 KWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGH 300 (484)
T ss_pred EECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcc
Confidence 48899999999999999999999999999999987889999999993 379999999999999998887666668899
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecC-CCEEEEEE--cCCeEEEEECCCCCC
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD-DWILTAGT--SNGRVVFYDIRGKPQ 156 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPd-G~~LatGs--~DGsV~IWDlrs~~k 156 (633)
...|+.+.|++|++++++|+.|+.|.|||.....+...+ .|.++|.+++|+|. ...||+|+ .|+.|++||..++.
T Consensus 301 ~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~- 379 (484)
T KOG0305|consen 301 RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA- 379 (484)
T ss_pred cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-
Confidence 999999999999999999999999999999776665554 79999999999994 56788765 59999999999873
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEec--------------------------------cCCCCeEEEEeeCCCeEE
Q 006743 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDET--------------------------------TCKAETALLGGAVGDSIL 204 (633)
Q Consensus 157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s--------------------------------~~sd~~lLlSgs~Dg~Ik 204 (633)
.+....-...|++|.|++..+.|++.. ...++..+++++.|.+++
T Consensus 380 ---~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlr 456 (484)
T KOG0305|consen 380 ---RIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLR 456 (484)
T ss_pred ---EecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEE
Confidence 233333556777777777665444321 233555666667777777
Q ss_pred ccCCCCC
Q 006743 205 MPDPLPS 211 (633)
Q Consensus 205 IWDlr~~ 211 (633)
+|++-..
T Consensus 457 fw~~f~~ 463 (484)
T KOG0305|consen 457 FWNLFDE 463 (484)
T ss_pred eccccCC
Confidence 7776544
No 46
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.84 E-value=7e-20 Score=190.78 Aligned_cols=192 Identities=17% Similarity=0.271 Sum_probs=166.2
Q ss_pred CEEEEEECCCcEEEEECCCCceeE----EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-------------
Q 006743 7 EHLASISLSGDLILHNLASGAKAA----ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG------------- 69 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~v~----~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t------------- 69 (633)
..+++++.|.++++|.++.+.... ..+ +|...|.+|...+++. .+++|+.|.+|.||+...
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~-GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCR-GHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhc-ccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhh
Confidence 368999999999999998765432 222 4778888999999998 899999999999999311
Q ss_pred -----------CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEE
Q 006743 70 -----------RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT 138 (633)
Q Consensus 70 -----------~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~La 138 (633)
...++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.....+.|+.++|..+.|+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLA 316 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceee
Confidence 0112567889999999999996 7889999999999999999999999998999999999999999999
Q ss_pred EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 139 tGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
+|+.|..|++||.|++...+......+|...|.++.|+|. +..+|++++.|+++++||+|...
T Consensus 317 ~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~-----------~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT-----------NEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC-----------CceEEEEEecCCeEEEEEeccCC
Confidence 9999999999999998766666677799999999999996 66778899999999999998655
No 47
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.6e-20 Score=182.16 Aligned_cols=186 Identities=17% Similarity=0.269 Sum_probs=161.0
Q ss_pred CCCcEEEEECCCCceeEEEeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-
Q 006743 14 LSGDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS- 91 (633)
Q Consensus 14 ~DG~I~IWDl~tgk~v~~~~~~-~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP- 91 (633)
..|++.|.++.+.+.+.++..- ..+.+..|+|+++..+.+++++.||.++|||+.....+++.+++|..+|.++.|++
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 4689999999766666555421 35778899999998889999999999999998777777899999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC
Q 006743 92 DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA 169 (633)
Q Consensus 92 dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~ 169 (633)
+...+++++.|++||+||...++.+.++ +|...|+..+|+| ..+.+++++.||++++||++...+.+. +. .|...
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~--ah~~E 192 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IE--AHNSE 192 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EE--eccce
Confidence 8888999999999999999988888877 6999999999999 578999999999999999998755444 33 78899
Q ss_pred eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 170 VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
|.|+.|+.- +..++++++.|+.|+.||+|+...
T Consensus 193 il~cdw~ky-----------~~~vl~Tg~vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 193 ILCCDWSKY-----------NHNVLATGGVDNLVRGWDIRNLRT 225 (311)
T ss_pred eEeeccccc-----------CCcEEEecCCCceEEEEehhhccc
Confidence 999999874 677888999999999999997764
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.84 E-value=1.6e-20 Score=200.24 Aligned_cols=206 Identities=17% Similarity=0.181 Sum_probs=165.2
Q ss_pred ccC-CCCEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 2 YNC-KDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 2 FSp-dG~~LaSgs~DG~I~IWDl~t-gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
|-| .+.+|++++.|+.|+||++.+ +++++.|.+ |...|++++|+.+|. .|++++.|++|++||++++.+.. ...
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~~~--~f~ 297 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGT-SFLSASFDRFLKLWDTETGQVLS--RFH 297 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCC-eeeeeecceeeeeeccccceEEE--EEe
Confidence 344 688999999999999999986 788899986 778899999999998 79999999999999999998533 233
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743 80 HSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (633)
Q Consensus 80 H~~~VtsLafSPdg-~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~ 157 (633)
-...++|+.|+|++ +.|++|+.|+.|+.||+|+++.++.+ .|-+.|..+.|-++|+++++.+.|+.|+||+.+..- +
T Consensus 298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-~ 376 (503)
T KOG0282|consen 298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-P 376 (503)
T ss_pred cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-c
Confidence 44678999999966 89999999999999999999998888 478999999999999999999999999999998752 2
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEe-----------------------------------ccCCCCeEEEEeeCCCe
Q 006743 158 LTVLRACSSSEAVSSLCWQRAKPVFIDE-----------------------------------TTCKAETALLGGAVGDS 202 (633)
Q Consensus 158 v~~l~~~~H~~~VtsLafsPdg~~Las~-----------------------------------s~~sd~~lLlSgs~Dg~ 202 (633)
++.+. ..+.-...++..+|+++++++. ..+.|+.+|++|..||.
T Consensus 377 ik~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 377 IKNIA-DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred chhhc-chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence 22111 1223344556666666655521 13557777888888999
Q ss_pred EEccCCCCCCC
Q 006743 203 ILMPDPLPSVT 213 (633)
Q Consensus 203 IkIWDlr~~~~ 213 (633)
+.+||-++..-
T Consensus 456 v~~wdwkt~kl 466 (503)
T KOG0282|consen 456 VNFWDWKTTKL 466 (503)
T ss_pred EEEeechhhhh
Confidence 99999875443
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=7.8e-20 Score=205.07 Aligned_cols=199 Identities=15% Similarity=0.193 Sum_probs=171.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
+|+|.+..+++||.|-.|+||+..+.+++.++.+ |.+-|+.+.|++.-. +|+++++|.+|+||+..+.++ +.++.+|
T Consensus 58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G-HlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~-iavltGH 134 (1202)
T KOG0292|consen 58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG-HLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKC-IAVLTGH 134 (1202)
T ss_pred eecCCCCeEEecCCccEEEEEecccceehhhhcc-ccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCce-EEEEecC
Confidence 5899999999999999999999999999999987 677889999999888 899999999999999999886 7889999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------C--------------------ceeeE-e-eCCCCeEEEEE
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGS--------R--------------------RPSSC-I-TYEAPFSSLAF 130 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt--------g--------------------k~v~~-i-~h~~~ItsLaf 130 (633)
+..|.|..|+|....+++++-|.+||+||+.. + ..++. + +|...|+-++|
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 99999999999999999999999999999842 1 01111 1 58888999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 131 SPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
+|.-..|++|+.|+.|++|.+... +...+-...+|.+.|.++-|+|. ..++++.+.|+.|+|||+..
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnet-KaWEvDtcrgH~nnVssvlfhp~------------q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNET-KAWEVDTCRGHYNNVSSVLFHPH------------QDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred cCCcceEEecCCcceeeEEEeccc-cceeehhhhcccCCcceEEecCc------------cceeEecCCCccEEEEeccc
Confidence 999999999999999999999865 34455555699999999999994 45666778899999999976
Q ss_pred CCCCC
Q 006743 211 SVTTS 215 (633)
Q Consensus 211 ~~~~s 215 (633)
..+..
T Consensus 282 Rt~v~ 286 (1202)
T KOG0292|consen 282 RTSVQ 286 (1202)
T ss_pred cccee
Confidence 65544
No 50
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.83 E-value=7.9e-21 Score=194.19 Aligned_cols=175 Identities=19% Similarity=0.282 Sum_probs=157.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC-------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~-------~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v 74 (633)
|+|||+||++|+.||.|.+||..+|+..+.++- -+.+.|.|+.|+.|.. .+++|+.||.|+||.++++.+..
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~ClR 299 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQCLR 299 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEEEEecchHHH
Confidence 899999999999999999999999986654431 2467899999999988 89999999999999999999876
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
+.-+.|...|+|+.|+.|+..+++++.|.++++.-+++|+++..+ +|...|+...|.+||.+|++++.||+|++|+.++
T Consensus 300 rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 300 RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence 666799999999999999999999999999999999999999888 6999999999999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCeeEEEEccC
Q 006743 154 KPQPLTVLRACSSSEAVSSLCWQRA 178 (633)
Q Consensus 154 ~~k~v~~l~~~~H~~~VtsLafsPd 178 (633)
. .++..++..+...+|.++-.-|.
T Consensus 380 t-eC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 380 T-ECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred h-hhhhhccCCCCcccceeEEEcCC
Confidence 7 45666776677788888888774
No 51
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.83 E-value=1.2e-19 Score=192.47 Aligned_cols=196 Identities=20% Similarity=0.307 Sum_probs=158.3
Q ss_pred ccCCCC-EEEEEECCCcEEEEECCCCce-------eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CCc
Q 006743 2 YNCKDE-HLASISLSGDLILHNLASGAK-------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RSP 72 (633)
Q Consensus 2 FSpdG~-~LaSgs~DG~I~IWDl~tgk~-------v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t-~~~ 72 (633)
|++... +|++++.|+.|++||+..... ...+. .|...|..++|++....+|+++++|+.+.|||++. ...
T Consensus 185 Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK 263 (422)
T ss_pred cccccceeEeeccCCCcEEEEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence 565543 789999999999999975332 23344 48889999999999888999999999999999995 333
Q ss_pred eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-eeeEe-eCCCCeEEEEEecCC-CEEEEEEcCCeEEE
Q 006743 73 KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVF 148 (633)
Q Consensus 73 ~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk-~v~~i-~h~~~ItsLafSPdG-~~LatGs~DGsV~I 148 (633)
..+...+|.+.|+|++|+| ++..||+|+.|++|++||+|+.+ ++..+ .|+..|.+|.|+|+. .+|++++.|+.+.|
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v 343 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV 343 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence 4677889999999999999 88999999999999999999743 34444 799999999999964 67888999999999
Q ss_pred EECCCCCC-----------ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 149 YDIRGKPQ-----------PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 149 WDlrs~~k-----------~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
||+..-.. +.-.+..-||...|..+.|+|+.+++ +++.+.|+.+.||+..
T Consensus 344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~-----------I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWT-----------IASVAEDNILQIWQMA 404 (422)
T ss_pred EeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeE-----------EEEecCCceEEEeecc
Confidence 99975221 22234445899999999999986655 4456779999999874
No 52
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.83 E-value=9.1e-20 Score=193.47 Aligned_cols=192 Identities=23% Similarity=0.384 Sum_probs=157.6
Q ss_pred CEEEEEECCCcEEEEECCCCce----------eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-----
Q 006743 7 EHLASISLSGDLILHNLASGAK----------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS----- 71 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~----------v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~----- 71 (633)
..+|+++..+.|+|||.....- -..+.+|.++ -..|.|++...-.|++++.|++|++||+....
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e-g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE-GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV 216 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc-ccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence 4677788899999999864321 1256665553 45699999887789999999999999995432
Q ss_pred -ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCC--CceeeEe-eCCCCeEEEEEecC-CCEEEEEEcCCe
Q 006743 72 -PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS--RRPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGR 145 (633)
Q Consensus 72 -~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrt--gk~v~~i-~h~~~ItsLafSPd-G~~LatGs~DGs 145 (633)
.+...+.+|...|..++|++ +..+|++++.|+.+.|||+|+ .++.... +|.+.|.|++|+|. +.+||+|+.|++
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 22567889999999999999 888999999999999999995 3443333 69999999999994 577889999999
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
|.+||+|+..+++..+. +|...|.+|.|+|+ .+.+|++++.|+.+.|||+....
T Consensus 297 V~LwDlRnL~~~lh~~e--~H~dev~~V~WSPh-----------~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 297 VALWDLRNLNKPLHTFE--GHEDEVFQVEWSPH-----------NETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred EEEeechhcccCceecc--CCCcceEEEEeCCC-----------CCceeEecccCCcEEEEeccccc
Confidence 99999999888777776 89999999999996 66777888899999999995433
No 53
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.83 E-value=5.4e-20 Score=190.36 Aligned_cols=166 Identities=17% Similarity=0.238 Sum_probs=146.2
Q ss_pred EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 006743 30 AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109 (633)
Q Consensus 30 ~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWD 109 (633)
+.+.+ |...|+||++.|.+. +|++|+.|++|+|||+.+++. ..++.+|-..|..+++++-..|+++++.|+.|+.||
T Consensus 145 rVi~g-HlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~L-kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 145 RVISG-HLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQL-KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhhh-ccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeE-EEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 34444 778899999999876 999999999999999999985 567899999999999999999999999999999999
Q ss_pred CCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccC
Q 006743 110 PGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTC 188 (633)
Q Consensus 110 lrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~ 188 (633)
+...+.++.+ +|-..|+|++.+|.-..|++|+.|.+++|||+|+.. .+.++. +|..+|..+.+.|.
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~--GH~~~V~~V~~~~~---------- 288 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLS--GHTNPVASVMCQPT---------- 288 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEec--CCCCcceeEEeecC----------
Confidence 9999888765 799999999999999999999999999999999984 445555 89999999999883
Q ss_pred CCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 189 KAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 189 sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
+..+++++.|.+|++||++.-..
T Consensus 289 --dpqvit~S~D~tvrlWDl~agkt 311 (460)
T KOG0285|consen 289 --DPQVITGSHDSTVRLWDLRAGKT 311 (460)
T ss_pred --CCceEEecCCceEEEeeeccCce
Confidence 44567778999999999976554
No 54
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=1.3e-19 Score=200.92 Aligned_cols=200 Identities=19% Similarity=0.231 Sum_probs=166.7
Q ss_pred CCCCEEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC----ceeE
Q 006743 4 CKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS----PKVS 75 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~----~~v~ 75 (633)
.+|.+|++|++|.++++|.++++. ++....+ |...|.+|+++..+..+|++++.|+++++|++...+ +.+.
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g-H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~ 453 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG-HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL 453 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc-cccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence 356799999999999999885433 3334444 677788999998888899999999999999996622 1122
Q ss_pred ----EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743 76 ----WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (633)
Q Consensus 76 ----~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWD 150 (633)
+...|...|+|++++|+.++|++|+.|++.+||++...+...++ +|...|.|+.|+|..+.+++++.|++|+||.
T Consensus 454 ~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 34579999999999999999999999999999999988888777 6999999999999999999999999999999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccc
Q 006743 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (633)
Q Consensus 151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~ 219 (633)
+.+. .+++.+. +|...|..+.|-.+ +..|++++.||.||+|++....+..++..
T Consensus 534 is~f-SClkT~e--GH~~aVlra~F~~~------------~~qliS~~adGliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 534 ISTF-SCLKTFE--GHTSAVLRASFIRN------------GKQLISAGADGLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred eccc-eeeeeec--CccceeEeeeeeeC------------CcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence 9988 4566666 89999999999875 44556667899999999987776655543
No 55
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.1e-19 Score=190.69 Aligned_cols=194 Identities=19% Similarity=0.294 Sum_probs=155.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
+|+||+++|++|+.|..+.+||+.+|.....+...++..+.+++|.|||. .+++|+.|+.|..||+.+.. ...+.+.
T Consensus 276 ~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~--~~~W~gv 352 (519)
T KOG0293|consen 276 MWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNI--LGNWEGV 352 (519)
T ss_pred EECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcch--hhccccc
Confidence 59999999999999999999999999999888866677888899999998 69999999999999998776 3334433
Q ss_pred -CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeE---------------------------------
Q 006743 81 -SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFS--------------------------------- 126 (633)
Q Consensus 81 -~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~It--------------------------------- 126 (633)
...|.+++..+||+++++.+.|..|++|+..+......+....+|+
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 3579999999999999999999888888875433322222222222
Q ss_pred -----------EEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEE
Q 006743 127 -----------SLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETAL 194 (633)
Q Consensus 127 -----------sLafSP-dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lL 194 (633)
.-||-- +..+|++|++|+.|+||+.+++ +++.++. +|...|.|++|+|. +...+
T Consensus 433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~Ls--GHs~~vNcVswNP~-----------~p~m~ 498 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLS--GHSKTVNCVSWNPA-----------DPEMF 498 (519)
T ss_pred hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeec--CCcceeeEEecCCC-----------CHHHh
Confidence 233333 3467889999999999999887 6777777 99999999999996 55567
Q ss_pred EEeeCCCeEEccCCCCC
Q 006743 195 LGGAVGDSILMPDPLPS 211 (633)
Q Consensus 195 lSgs~Dg~IkIWDlr~~ 211 (633)
++++.|++|+||-+.+.
T Consensus 499 ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 499 ASASDDGTIRIWGPSDN 515 (519)
T ss_pred hccCCCCeEEEecCCcc
Confidence 77889999999977544
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=175.50 Aligned_cols=195 Identities=16% Similarity=0.283 Sum_probs=156.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC--ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEE
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSW 76 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tg--k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--~~v~~ 76 (633)
||+|.|++|++|+-|.++.||.-.++ +++..+.+ |...|.|++|+++|+ +||+++.|+.|-||.+.... .....
T Consensus 68 Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aV 145 (312)
T KOG0645|consen 68 AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAV 145 (312)
T ss_pred eecCCCcEEEEeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEee
Confidence 69999999999999999999987654 46777887 667789999999998 99999999999999997443 23667
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt---gk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
+..|...|..+.|+|...+|++++.|++|++|+-.. ..++..+ .|...|.+++|++.|..|++++.|++|+||-..
T Consensus 146 L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 146 LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred eccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 899999999999999999999999999999998762 3566666 588899999999999999999999999999844
Q ss_pred CCC-----Cc-------------------eEEEe----------------ecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 006743 153 GKP-----QP-------------------LTVLR----------------ACSSSEAVSSLCWQRAKPVFIDETTCKAET 192 (633)
Q Consensus 153 s~~-----k~-------------------v~~l~----------------~~~H~~~VtsLafsPdg~~Las~s~~sd~~ 192 (633)
..- .. +.+++ ...|...|.+++|.|. ...
T Consensus 226 ~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~-----------~~~ 294 (312)
T KOG0645|consen 226 TDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK-----------VSN 294 (312)
T ss_pred cCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC-----------CCC
Confidence 210 00 01110 1135556677777662 355
Q ss_pred EEEEeeCCCeEEccCC
Q 006743 193 ALLGGAVGDSILMPDP 208 (633)
Q Consensus 193 lLlSgs~Dg~IkIWDl 208 (633)
+|++++.||.|++|.+
T Consensus 295 ~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 295 RLASGGDDGIVNFWEL 310 (312)
T ss_pred ceeecCCCceEEEEEe
Confidence 6777888999999975
No 57
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.82 E-value=9.5e-19 Score=188.20 Aligned_cols=194 Identities=15% Similarity=0.240 Sum_probs=156.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCcee----------------------------------------------EEEeCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKA----------------------------------------------AELKDP 35 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v----------------------------------------------~~~~~~ 35 (633)
|+|.|.|+|+|...|+|+|||....+.+ .++. .
T Consensus 67 ySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~-G 145 (603)
T KOG0318|consen 67 YSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEIT-G 145 (603)
T ss_pred eCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceee-c
Confidence 7999999999999999999997432211 1122 2
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 006743 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (633)
Q Consensus 36 ~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~ 115 (633)
|...|.+++|-|.-...+++|++|++|.+|+-.--+. ...++.|..-|+|++|+|||.+|++++.||+|.+||-.+++.
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF-k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF-KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee-eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence 4455666677666666789999999999998766553 466788999999999999999999999999999999999999
Q ss_pred eeEe----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE------------------------------
Q 006743 116 SSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL------------------------------ 161 (633)
Q Consensus 116 v~~i----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l------------------------------ 161 (633)
+..+ +|.+.|.++.|+||+..+++++.|.+++|||+.+.+ +++.+
T Consensus 225 vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s-lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in 303 (603)
T KOG0318|consen 225 VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS-LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN 303 (603)
T ss_pred EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc-eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence 8887 499999999999999999999999999999998652 21111
Q ss_pred -----------eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 162 -----------RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 162 -----------~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
...+|...|+++..+++ +.++++++.||.|.-||...
T Consensus 304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~d------------~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 304 YLNPSDPSVLKVISGHNKSITALTVSPD------------GKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred EecccCCChhheecccccceeEEEEcCC------------CCEEEeeccCceEEEEecCC
Confidence 12368888888888874 45667778899999999864
No 58
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.9e-19 Score=193.93 Aligned_cols=202 Identities=14% Similarity=0.171 Sum_probs=178.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|+|..-+++++-.+|.|.|||.++...++.+.. ...+|++.+|-...+ .+++|++|..|+||+..+.+ +++.+..|.
T Consensus 21 ~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~e-kV~~FeAH~ 97 (794)
T KOG0276|consen 21 FHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGE-KVKTFEAHS 97 (794)
T ss_pred cCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccc-eEEEecCCceEEEEecccce-eeEEeeccc
Confidence 688888999999999999999999999998875 566788888988766 89999999999999999988 488999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCce
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg-k~v~~i-~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
..|+|++.+|...+++++++|-+|++||-+.+ .+.+++ +|...|.+++|+| |.+.+++++-|++|+||.+... .+.
T Consensus 98 DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~n 176 (794)
T KOG0276|consen 98 DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPN 176 (794)
T ss_pred cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCc
Confidence 99999999999999999999999999999864 566666 7999999999999 7789999999999999999876 455
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccc
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~ 219 (633)
.++. +|...|.|++|-+ .++..+|++|+.|..+||||.....+..++..
T Consensus 177 fTl~--gHekGVN~Vdyy~----------~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG 225 (794)
T KOG0276|consen 177 FTLE--GHEKGVNCVDYYT----------GGDKPYLISGADDLTIKVWDYQTKSCVQTLEG 225 (794)
T ss_pred eeee--ccccCcceEEecc----------CCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence 6666 9999999999987 44788999999999999999987666555443
No 59
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=2.9e-19 Score=186.10 Aligned_cols=191 Identities=19% Similarity=0.267 Sum_probs=155.1
Q ss_pred CCEEEEEECCCcEEEEECCC----------------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Q 006743 6 DEHLASISLSGDLILHNLAS----------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG 69 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~t----------------gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t 69 (633)
.-+.++-+..|.|+|||+.. .+.+.++.+| +..-..|+|+|-....|++|..-+.|++|...+
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~gh-k~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGH-KGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEeccc-CccceeeecccccccccccCccccceEeeeecc
Confidence 34566778899999999842 2355666664 455577999995444589999999999999977
Q ss_pred CCcee--EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC---ceeeEeeCCCCeEEEEEecCCCEEEEEEcC
Q 006743 70 RSPKV--SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR---RPSSCITYEAPFSSLAFIDDDWILTAGTSN 143 (633)
Q Consensus 70 ~~~~v--~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtg---k~v~~i~h~~~ItsLafSPdG~~LatGs~D 143 (633)
+...+ .-+.+|+..|..++|+| ....|++|+.||+|+|||+|.+ .++....|.+.|+.+.|+.+..+||+|+.|
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 65332 33567999999999999 7789999999999999999988 445555799999999999988899999999
Q ss_pred CeEEEEECCCC--CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 144 GRVVFYDIRGK--PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 144 GsV~IWDlrs~--~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
|+++|||+|+. .+|+..++ .|..+|++|.|+|. +...++.++.|.+|.+||+..
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk--~Hk~pItsieW~p~-----------e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFK--YHKAPITSIEWHPH-----------EDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ceEEEEEhhhccCCCcceeEE--eccCCeeEEEeccc-----------cCceEEeccCCCcEEEEEeec
Confidence 99999999973 36777777 79999999999995 455566667799999999954
No 60
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=2.3e-19 Score=192.40 Aligned_cols=201 Identities=14% Similarity=0.161 Sum_probs=155.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--- 73 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~--- 73 (633)
++.|.|-+|++|+.|..|++||++... .-+.+.......|+.+.|++.+. .|++.+..-..+|+|-.+....
T Consensus 174 ~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aqakl~DRdG~~~~e~~ 252 (641)
T KOG0772|consen 174 AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQAKLLDRDGFEIVEFS 252 (641)
T ss_pred eecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcceeEEccCCceeeeee
Confidence 467899999999999999999997533 33444444567899999999998 4555666688999998765522
Q ss_pred --------eEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-eeeEee------CCCCeEEEEEecCCCEE
Q 006743 74 --------VSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCIT------YEAPFSSLAFIDDDWIL 137 (633)
Q Consensus 74 --------v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk-~v~~i~------h~~~ItsLafSPdG~~L 137 (633)
....++|...++|.+|+| +...|++++.||+++|||+..-+ ...++. ..-.++.++|++||+.|
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i 332 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI 332 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Confidence 123468999999999999 77789999999999999997643 333332 34568999999999999
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743 138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (633)
Q Consensus 138 atGs~DGsV~IWDlrs~~k~v~~l~~~~H~~--~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ 214 (633)
|+|+.||.|.+||.++...........+|.. .|+||.|+++|++|++ -+.|+.+++||+|.+..+
T Consensus 333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS------------Rg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS------------RGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh------------ccCCCceeeeeccccccc
Confidence 9999999999999876432222222236766 8999999996666554 467999999999977653
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3e-19 Score=200.48 Aligned_cols=197 Identities=16% Similarity=0.203 Sum_probs=172.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
+|+|..-+++++-..|.|.+||.+-+.++..|.. |.++|+.|+|+|.+. +|++|++|-.|+||+....++ +.++.+|
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFde-HdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrc-lftL~GH 92 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRC-LFTLLGH 92 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc-cCCccceeeecCCCC-eEEecCCccEEEEEeccccee-hhhhccc
Confidence 5899999999999999999999999999999986 788899999999998 999999999999999998886 5778999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC----
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP---- 155 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~---- 155 (633)
-..|..+.|++.-.+|+++++|.+|+||+..+++++.++ +|...|.|.+|+|....|++++-|.+|+|||+....
T Consensus 93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~ 172 (1202)
T KOG0292|consen 93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNK 172 (1202)
T ss_pred cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCC
Confidence 999999999999999999999999999999999999888 699999999999999999999999999999986411
Q ss_pred Cc----------------------eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 156 QP----------------------LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 156 k~----------------------v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
.+ +......+|...|.-++|+|. -.++++|+.|+.||+|.....+
T Consensus 173 ~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT------------lpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 173 APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT------------LPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred CCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC------------cceEEecCCcceeeEEEecccc
Confidence 01 111122389999999999994 4456666889999999876543
No 62
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=2.2e-19 Score=199.14 Aligned_cols=184 Identities=17% Similarity=0.251 Sum_probs=160.3
Q ss_pred CEEEEEECCCcEEEEECCCCcee---EE-----EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743 7 EHLASISLSGDLILHNLASGAKA---AE-----LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~v---~~-----~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~ 78 (633)
..|++++.|++|++|++...+.- .. ....|+.-|++|+++|++. +|+||+.|++.+||+++... ....+.
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~-l~~vLs 502 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR-LLGVLS 502 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCce-EEEEee
Confidence 47899999999999999762211 11 1224677799999999987 99999999999999999555 578899
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (633)
Q Consensus 79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~ 157 (633)
+|...|.|+.|+|..+.+++++.|++|+||.+.+..++.++ +|...|..+.|-.+++.|++++.||.|++|++++. .+
T Consensus 503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~-eC 581 (775)
T KOG0319|consen 503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN-EC 581 (775)
T ss_pred CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch-hh
Confidence 99999999999999999999999999999999999999999 59999999999999999999999999999999998 45
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (633)
Q Consensus 158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD 207 (633)
+..+. +|...|++++.++. ...+++++.|+.|.+|.
T Consensus 582 ~~tlD--~H~DrvWaL~~~~~------------~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 582 EMTLD--AHNDRVWALSVSPL------------LDMFVTGGGDGRIIFWK 617 (775)
T ss_pred hhhhh--hccceeEEEeecCc------------cceeEecCCCeEEEEee
Confidence 56666 89999999998884 44667778899999993
No 63
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=7.5e-18 Score=172.65 Aligned_cols=211 Identities=15% Similarity=0.197 Sum_probs=173.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCCceeEEec
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD--DGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~--DGtI~IWDl~t~~~~v~~l~ 78 (633)
.|+.+|.+|++++.|..|+|||..+++.++.+.. ++..+..++|-.... .++.++. |.+|+.-++.+++. ++.+.
T Consensus 21 ~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~dNky-lRYF~ 97 (311)
T KOG1446|consen 21 DFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHDNKY-LRYFP 97 (311)
T ss_pred EecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCc-eEEEccCCCCCceEEEEeecCce-EEEcC
Confidence 3889999999999999999999999999999875 455677788877665 4555554 88999999998884 78899
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCc
Q 006743 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQP 157 (633)
Q Consensus 79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~-~k~ 157 (633)
+|...|+.++.+|-+..|++++.|++|++||+|..++...+.... -..++|+|.|-++|++.....|++||+|.. +.|
T Consensus 98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP 176 (311)
T KOG1446|consen 98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGP 176 (311)
T ss_pred CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCC
Confidence 999999999999988999999999999999999888877764333 334789999999999999889999999985 456
Q ss_pred eEEEeec-CCCCCeeEEEEccCCCeEEEe---------------------------------ccCCCCeEEEEeeCCCeE
Q 006743 158 LTVLRAC-SSSEAVSSLCWQRAKPVFIDE---------------------------------TTCKAETALLGGAVGDSI 203 (633)
Q Consensus 158 v~~l~~~-~H~~~VtsLafsPdg~~Las~---------------------------------s~~sd~~lLlSgs~Dg~I 203 (633)
...+... +-....+.+.|+|+|++|+.+ ....++.++++++.||.|
T Consensus 177 F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 177 FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence 6666543 445678999999999998732 134678899999999999
Q ss_pred EccCCCCCCCCC
Q 006743 204 LMPDPLPSVTTS 215 (633)
Q Consensus 204 kIWDlr~~~~~s 215 (633)
.+|++.......
T Consensus 257 ~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 257 HVWNLETGKKVA 268 (311)
T ss_pred EEEEcCCCcEee
Confidence 999996544433
No 64
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.3e-18 Score=182.77 Aligned_cols=213 Identities=13% Similarity=0.171 Sum_probs=166.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l 77 (633)
.|+++|+|||+++.|.+..||++.... ...++.+ |...|.-+.|+||++ +|++|+.|..+.+||+.++......-
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~tgd~~~~y~ 308 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDR-YLLACGFDEVLSLWDVDTGDLRHLYP 308 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCC-eEEecCchHheeeccCCcchhhhhcc
Confidence 389999999999999999999986443 3556666 445566699999998 88999999999999999988543333
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (633)
Q Consensus 78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k 156 (633)
.+|...+.+++|.|||..|++|+.|+.|..||+.....-..-+ ....|.+++..+||+++++.+.|..|++|+......
T Consensus 309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d 388 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD 388 (519)
T ss_pred cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh
Confidence 4456889999999999999999999999999997544322222 335699999999999999999999999999887532
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEE---------------------------------EeccCCCCeEEEEeeCCCeE
Q 006743 157 PLTVLRACSSSEAVSSLCWQRAKPVFI---------------------------------DETTCKAETALLGGAVGDSI 203 (633)
Q Consensus 157 ~v~~l~~~~H~~~VtsLafsPdg~~La---------------------------------s~s~~sd~~lLlSgs~Dg~I 203 (633)
. ..+ ....+|++++.+.++++++ +|-...+..++++|+.|++|
T Consensus 389 r-~li---se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 389 R-GLI---SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred h-ccc---cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 1 122 2456788888888887765 23234466789999999999
Q ss_pred EccCCCCCCCCCcccc
Q 006743 204 LMPDPLPSVTTSSVSL 219 (633)
Q Consensus 204 kIWDlr~~~~~ss~s~ 219 (633)
+||+.+.-.+...++.
T Consensus 465 yIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 465 YIWHRISGKLLAVLSG 480 (519)
T ss_pred EEEEccCCceeEeecC
Confidence 9999877666555443
No 65
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.4e-18 Score=183.22 Aligned_cols=197 Identities=17% Similarity=0.244 Sum_probs=165.6
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC-------C-CCcee
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT-------G-RSPKV 74 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~-------t-~~~~v 74 (633)
+|+|.+|+.|+..|.|++|.+.+|..+..+.. |-..|+|+.|+-|+. +|++|+.||.|.+|++. + ...+.
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-HYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSA-HYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHHHh-hccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccce
Confidence 67888998888999999999999999988864 778899999999998 89999999999999872 1 22346
Q ss_pred EEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 75 SWLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 75 ~~l~~H~~~VtsLafSPd--g~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
+.+..|.-+|+++...+. ..++++++.|.++|+||+..+..+..+.....+.+++.+|-++.+++|+.+|.|.+.++.
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 788999999999998763 468999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC-------------CceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 153 GKP-------------QPLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 153 s~~-------------k~v~~l~~~~H~~--~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
+.. .-.......+|.+ .|+|++++- |+.+|++|+.||+|+|||+.....
T Consensus 248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~------------DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 248 KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST------------DGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred cCCcccccccccccccccceeeeeccccCCcceeEEEEec------------CccEEEeeCCCCCEEEEecchHHH
Confidence 532 0111222337777 999999876 677788889999999999854333
No 66
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.80 E-value=5.2e-18 Score=176.23 Aligned_cols=189 Identities=17% Similarity=0.298 Sum_probs=156.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
.|+.+|.+||+|+.+|.|.||+..++.....+.....+.+ -++|+|.+. +|++|+.||.|.+|.+.... ..+.+.+|
T Consensus 113 ~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~die-Wl~WHp~a~-illAG~~DGsvWmw~ip~~~-~~kv~~Gh 189 (399)
T KOG0296|consen 113 SFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIE-WLKWHPRAH-ILLAGSTDGSVWMWQIPSQA-LCKVMSGH 189 (399)
T ss_pred EEccCceEEEecCCCccEEEEEcccCceEEEeecccCceE-EEEeccccc-EEEeecCCCcEEEEECCCcc-eeeEecCC
Confidence 4899999999999999999999999998888864344444 489999887 99999999999999998854 46788999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-----------------------------------------
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----------------------------------------- 119 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i----------------------------------------- 119 (633)
+.++++=+|.|+|++++++..||+|++||+++++++..+
T Consensus 190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 999999999999999999999999999998665443221
Q ss_pred -------------------------------------------------------eCCCCeEEEEEecCCCEEEEEEcCC
Q 006743 120 -------------------------------------------------------TYEAPFSSLAFIDDDWILTAGTSNG 144 (633)
Q Consensus 120 -------------------------------------------------------~h~~~ItsLafSPdG~~LatGs~DG 144 (633)
.|+..|..+.|.+ ..+|++++.||
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g 348 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANG 348 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCc
Confidence 1334455667766 57899999999
Q ss_pred eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 145 sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
.|+.||.|++ +....+. +|...|.+++++|+. .++++++.|++.+||++
T Consensus 349 ~v~~wDaRtG-~l~~~y~--GH~~~Il~f~ls~~~------------~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 349 KVRQWDARTG-QLKFTYT--GHQMGILDFALSPQK------------RLVVTVSDDNTALVFEV 397 (399)
T ss_pred eEEeeecccc-ceEEEEe--cCchheeEEEEcCCC------------cEEEEecCCCeEEEEec
Confidence 9999999998 4555555 999999999999954 45566677888888876
No 67
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.80 E-value=4.5e-19 Score=180.80 Aligned_cols=201 Identities=13% Similarity=0.205 Sum_probs=160.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC------------C------ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeE
Q 006743 1 MYNCKDEHLASISLSGDLILHNLAS------------G------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTL 62 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~t------------g------k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI 62 (633)
+|++||.++|+|+.|-.|+|+|++. + -.++++-. |.+.|+++.|+|... +|++|+.|++|
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD-H~devn~l~FHPre~-ILiS~srD~tv 196 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD-HVDEVNDLDFHPRET-ILISGSRDNTV 196 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh-ccCcccceeecchhh-eEEeccCCCeE
Confidence 6999999999999999999999862 1 13445544 667789999999987 99999999999
Q ss_pred EEEECCCCCce-eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe----eCCCCeEEEEEecCCCEE
Q 006743 63 HLWDTTGRSPK-VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWIL 137 (633)
Q Consensus 63 ~IWDl~t~~~~-v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i----~h~~~ItsLafSPdG~~L 137 (633)
+++|......+ .........+|.++.|+|.|.+|+.|.+-.++++||+.+-++.... .|.+.|+++.+++.|++.
T Consensus 197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lY 276 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLY 276 (430)
T ss_pred EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEE
Confidence 99999654422 1223345578999999999999999999999999999998876544 488999999999999999
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEeecCCC-CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCc
Q 006743 138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSS-EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (633)
Q Consensus 138 atGs~DGsV~IWDlrs~~k~v~~l~~~~H~-~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss 216 (633)
++|+.||.|+|||--.. +++..+.. .|. ..|++..|..+++| +++.+.|..+++|++....+...
T Consensus 277 vTaSkDG~IklwDGVS~-rCv~t~~~-AH~gsevcSa~Ftkn~ky------------iLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 277 VTASKDGAIKLWDGVSN-RCVRTIGN-AHGGSEVCSAVFTKNGKY------------ILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred EEeccCCcEEeeccccH-HHHHHHHh-hcCCceeeeEEEccCCeE------------EeecCCcceeeeeeecCCceEEE
Confidence 99999999999998776 34444443 454 56889999886555 45557899999999865555444
Q ss_pred c
Q 006743 217 V 217 (633)
Q Consensus 217 ~ 217 (633)
+
T Consensus 343 Y 343 (430)
T KOG0640|consen 343 Y 343 (430)
T ss_pred E
Confidence 3
No 68
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.80 E-value=1.3e-18 Score=177.05 Aligned_cols=194 Identities=16% Similarity=0.260 Sum_probs=161.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|.+|+..|++++.|.+|+.||+++|+.++++++ |...|+.++-+.-|..++.+|+.||+++|||++...+ ++ .....
T Consensus 98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~-t~~~k 174 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IK-TFENK 174 (338)
T ss_pred eccCCCEEEEecCCceEEEEecccceeeehhcc-ccceeeecCccccCCeEEEecCCCceEEEEeecccch-hh-ccccc
Confidence 788999999999999999999999999999997 6778888886767777899999999999999998774 33 34456
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC---CCc
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK---PQP 157 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~---~k~ 157 (633)
.+++++.|..++..+++|+-|+.|++||++.+....++ +|.+.|+.+..+++|.++.+-+-|.+|++||++-. ..+
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence 78999999999999999999999999999998888877 79999999999999999999999999999999853 234
Q ss_pred eEEEeecCCCCC--eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 158 LTVLRACSSSEA--VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 158 v~~l~~~~H~~~--VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
+.++....|.-. ....+|+| ++..+-.++.|+.+++||...
T Consensus 255 v~if~g~~hnfeknlL~cswsp------------~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSP------------NGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred EEEeecchhhhhhhcceeeccC------------CCCccccccccceEEEeeccc
Confidence 555554434322 33455555 555555567899999998743
No 69
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.80 E-value=1.2e-19 Score=180.70 Aligned_cols=193 Identities=16% Similarity=0.228 Sum_probs=154.9
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 006743 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~ 83 (633)
.|..+.|+++.|-+-+|||.-+|..+..|. |+..|..++|+.|.. +|++|+.++.++|||+...+.....+.+|.+.
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App~E~~ghtg~ 145 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG 145 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence 344456788889999999999999999987 788999999999886 89999999999999998887777788999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEE---------------------------------
Q 006743 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAF--------------------------------- 130 (633)
Q Consensus 84 VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLaf--------------------------------- 130 (633)
|..+.|....+.|++..+|++||+||.+++..++.+....+|+++.+
T Consensus 146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~ 225 (334)
T KOG0278|consen 146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC 225 (334)
T ss_pred ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcc
Confidence 99999999888999999999999999999988777655555554444
Q ss_pred -------ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeE
Q 006743 131 -------IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSI 203 (633)
Q Consensus 131 -------SPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~I 203 (633)
+|+..++++|++|..++.||..++..... + ..+|.++|.|+.|+|+ +.++.+|+.||+|
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-~-nkgh~gpVhcVrFSPd------------GE~yAsGSEDGTi 291 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-Y-NKGHFGPVHCVRFSPD------------GELYASGSEDGTI 291 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCceeee-c-ccCCCCceEEEEECCC------------CceeeccCCCceE
Confidence 44445556666677777777776643222 1 2489999999999994 5566677889999
Q ss_pred EccCCCCCCC
Q 006743 204 LMPDPLPSVT 213 (633)
Q Consensus 204 kIWDlr~~~~ 213 (633)
++|...+-.+
T Consensus 292 rlWQt~~~~~ 301 (334)
T KOG0278|consen 292 RLWQTTPGKT 301 (334)
T ss_pred EEEEecCCCc
Confidence 9998765444
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.79 E-value=5.2e-18 Score=170.46 Aligned_cols=201 Identities=17% Similarity=0.224 Sum_probs=170.6
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
||.+|.+|.+|++|..+.||-..+|+++.++.+ |...|.|++.+.+.+ .+++|+.|.++++||+.+++.+ ..+ ...
T Consensus 18 yN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~-~liTGSAD~t~kLWDv~tGk~l-a~~-k~~ 93 (327)
T KOG0643|consen 18 YNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSK-HLITGSADQTAKLWDVETGKQL-ATW-KTN 93 (327)
T ss_pred ecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcc-eeeeccccceeEEEEcCCCcEE-EEe-ecC
Confidence 789999999999999999999889999999997 667788899988877 7999999999999999999853 333 456
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCC-------CceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743 82 APTAGISFSSDDKIIASVGLD-----KKLYTYDPGS-------RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~D-----GtVrIWDlrt-------gk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~I 148 (633)
.+|..+.|+++|++++.+.++ +.|.++|++. ..+...+ .+...++.+-|.|-+++|++|++||.|.+
T Consensus 94 ~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~ 173 (327)
T KOG0643|consen 94 SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISI 173 (327)
T ss_pred CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEE
Confidence 789999999999988887654 5799999983 3444444 57889999999999999999999999999
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCccccc
Q 006743 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLS 220 (633)
Q Consensus 149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~s 220 (633)
||++++.+.+.... .|...|+.+++++ +..++++++.|.+-++||++.......+...
T Consensus 174 ~da~~g~~~v~s~~--~h~~~Ind~q~s~------------d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 174 YDARTGKELVDSDE--EHSSKINDLQFSR------------DRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred EEcccCceeeechh--hhccccccccccC------------CcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999866555544 6888999999998 6677888899999999999977766665554
No 71
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.79 E-value=2e-19 Score=185.40 Aligned_cols=183 Identities=16% Similarity=0.267 Sum_probs=155.7
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 006743 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~ 83 (633)
.|++.+++|..|++|+|||.++..+...+.+ |.+.|-|+.|.. + +|++|+.|.+|+|||+.++++ +.++..|...
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~G-HtGSVLCLqyd~--r-viisGSSDsTvrvWDv~tge~-l~tlihHcea 279 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTG-HTGSVLCLQYDE--R-VIVSGSSDSTVRVWDVNTGEP-LNTLIHHCEA 279 (499)
T ss_pred ecchhhhcccccCceEEeccccHHHHHhhhc-CCCcEEeeeccc--e-EEEecCCCceEEEEeccCCch-hhHHhhhcce
Confidence 4677889999999999999999888888887 556677788763 3 899999999999999999985 6788899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE----eeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC----ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (633)
Q Consensus 84 VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~----i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~ 159 (633)
|..+.|+ ..++++++.|.++.+||+.....+.. .+|...|+.+.|+ .++|++++.|.+|++|++.+. ..++
T Consensus 280 VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~-efvR 354 (499)
T KOG0281|consen 280 VLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC-EFVR 354 (499)
T ss_pred eEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce-eeeh
Confidence 9999998 67999999999999999987654322 2799999999996 569999999999999999988 4455
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
++. +|...|.|+.+ .+.++++|+.|.+|++||+..-+
T Consensus 355 tl~--gHkRGIAClQY--------------r~rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 355 TLN--GHKRGIACLQY--------------RDRLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred hhh--cccccceehhc--------------cCeEEEecCCCceEEEEeccccH
Confidence 555 89999998886 56788888999999999985433
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.79 E-value=2.7e-18 Score=181.34 Aligned_cols=196 Identities=18% Similarity=0.266 Sum_probs=168.8
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt 85 (633)
...+++|+.|..+.++|...++.+..+++ |...|+.+.|+++.. .+++++.|..|+||....... ......|..+|+
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s~-~~~~~~h~~~V~ 307 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSSE-PTSSRPHEEPVT 307 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchh-heeecCCcceEEeeccccccC-ccccccccccce
Confidence 36788999999999999999999999997 566678899999988 789999999999999976664 456789999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 006743 86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR 162 (633)
Q Consensus 86 sLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~---~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~ 162 (633)
.+..+|.|.||++++.|++..+.|++++..+....++ -.+++.+|+|||.++.+|..||.|+|||+.+.. ..-+
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~---~~a~ 384 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT---NVAK 384 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc---cccc
Confidence 9999999999999999999999999999988777654 458999999999999999999999999999874 3344
Q ss_pred ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccc
Q 006743 163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (633)
Q Consensus 163 ~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~ 219 (633)
+.+|.++|+.|+|+.+| .+|++++.|+.|++||+|.......+..
T Consensus 385 Fpght~~vk~i~FsENG------------Y~Lat~add~~V~lwDLRKl~n~kt~~l 429 (506)
T KOG0289|consen 385 FPGHTGPVKAISFSENG------------YWLATAADDGSVKLWDLRKLKNFKTIQL 429 (506)
T ss_pred CCCCCCceeEEEeccCc------------eEEEEEecCCeEEEEEehhhcccceeec
Confidence 55899999999999854 4555667799999999998776555444
No 73
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=6.8e-18 Score=172.43 Aligned_cols=239 Identities=15% Similarity=0.174 Sum_probs=176.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|++.+..|+++++||.+++||+.......+++ +..++.+++|.++. .+++|+-||.|+++|+.++. ...+..|.
T Consensus 21 f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~--~~~igth~ 94 (323)
T KOG1036|consen 21 FSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGN--EDQIGTHD 94 (323)
T ss_pred EcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccCCc--eEEEeccCceEEEEEecCCc--ceeeccCC
Confidence 67788889999999999999998887766776 67788888998754 59999999999999999887 56788999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL 161 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l 161 (633)
.+|.||.+++....+++|+.|++|++||.|....+..+.....|.++... ++.|++|+.|..|.+||+|+...+...
T Consensus 95 ~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~- 171 (323)
T KOG1036|consen 95 EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR- 171 (323)
T ss_pred CceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh-
Confidence 99999999998889999999999999999987777677667789988876 789999999999999999987654421
Q ss_pred eecCCCCCeeEEEEccCCCeEEEec-------------------------------------------cCCCCeEEEEee
Q 006743 162 RACSSSEAVSSLCWQRAKPVFIDET-------------------------------------------TCKAETALLGGA 198 (633)
Q Consensus 162 ~~~~H~~~VtsLafsPdg~~Las~s-------------------------------------------~~sd~~lLlSgs 198 (633)
+...-.-.+.||++-|++.-.++++ ...-...+++|+
T Consensus 172 reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG 251 (323)
T KOG1036|consen 172 RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG 251 (323)
T ss_pred ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC
Confidence 1112233455555555332222110 111233588889
Q ss_pred CCCeEEccCCCCCCCCCcccccccccCCCCCCccCCCCCCCccccCCCCCCCCc
Q 006743 199 VGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQ 252 (633)
Q Consensus 199 ~Dg~IkIWDlr~~~~~ss~s~s~a~sss~sslt~~ssG~~ssi~~~st~e~tP~ 252 (633)
.||.|.+||+.+.+....+. ..+.+-++++....|...++....+.+..+.
T Consensus 252 sDG~V~~Wd~~~rKrl~q~~---~~~~SI~slsfs~dG~~LAia~sy~ye~~~~ 302 (323)
T KOG1036|consen 252 SDGIVNIWDLFNRKRLKQLA---KYETSISSLSFSMDGSLLAIASSYQYERADT 302 (323)
T ss_pred CCceEEEccCcchhhhhhcc---CCCCceEEEEeccCCCeEEEEechhhhcCCC
Confidence 99999999997655433322 1222344555666676666666555555544
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.79 E-value=7.9e-19 Score=188.33 Aligned_cols=210 Identities=20% Similarity=0.338 Sum_probs=164.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEE-e-----------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAEL-K-----------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~-~-----------~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~ 68 (633)
.|++.|+.|++.+....++|+|- +|..+.++ + .+|-..++|.+|+|+....|++++.||+++|||+.
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eecCCCCeEEEEecCcceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 48899999999988999999995 55443332 2 14667789999999998899999999999999997
Q ss_pred CCCceeEEec-----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeeEe--eCCC--CeEEEEEecCCCEE
Q 006743 69 GRSPKVSWLK-----QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPSSCI--TYEA--PFSSLAFIDDDWIL 137 (633)
Q Consensus 69 t~~~~v~~l~-----~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg--k~v~~i--~h~~--~ItsLafSPdG~~L 137 (633)
..+.....++ +..-.++.++|++++++||.|+.||.|.+||.+.. ++...+ +|.. .|+||.|++||++|
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 6654433333 23357899999999999999999999999998653 233333 4655 89999999999999
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743 138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (633)
Q Consensus 138 atGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~ 217 (633)
++-+.|+++++||+++.++++.+.......-+-+.++|+|+.+.|+++... .-+...+.+.+||...+......
T Consensus 380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~------~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSA------PNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccc------cCCCCCceEEEEeccceeeEEEe
Confidence 999999999999999998888887766666778899999988888876332 22233567888888776655443
No 75
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=6.3e-18 Score=172.20 Aligned_cols=193 Identities=18% Similarity=0.254 Sum_probs=144.6
Q ss_pred CccC-CCCEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743 1 MYNC-KDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 1 AFSp-dG~~LaSgs~DG~I~IWDl~t-gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~ 78 (633)
+|+| ....++.++.||+|++|+++. |..+.+....+..+|.+++|+.+|. .+++|+.|+.+++||+.+++ +..+.
T Consensus 34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S~Q--~~~v~ 110 (347)
T KOG0647|consen 34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLASGQ--VSQVA 110 (347)
T ss_pred EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccCCC--eeeee
Confidence 5889 455666899999999999986 5655555555788899999999997 89999999999999999987 67788
Q ss_pred cCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeeEeeCCC---------------------------------
Q 006743 79 QHSAPTAGISFSSDDK--IIASVGLDKKLYTYDPGSRRPSSCITYEA--------------------------------- 123 (633)
Q Consensus 79 ~H~~~VtsLafSPdg~--~LaSgS~DGtVrIWDlrtgk~v~~i~h~~--------------------------------- 123 (633)
.|.++|.++.|-+... .|++|+.|++|++||+|...++..+....
T Consensus 111 ~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~ 190 (347)
T KOG0647|consen 111 AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEF 190 (347)
T ss_pred ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchh
Confidence 9999999999987444 89999999999999999766554433222
Q ss_pred ---------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCC-CceEEEeecCCC---------CCeeEEEEccCCCeEEE
Q 006743 124 ---------PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP-QPLTVLRACSSS---------EAVSSLCWQRAKPVFID 184 (633)
Q Consensus 124 ---------~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~-k~v~~l~~~~H~---------~~VtsLafsPdg~~Las 184 (633)
.++|++...|....+.|+-+|+|-|..+.... +.-..++ .|. -.|.+|+|+|.
T Consensus 191 k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk--CHR~~~~~~~~VYaVNsi~FhP~------ 262 (347)
T KOG0647|consen 191 KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK--CHRSTNSVNDDVYAVNSIAFHPV------ 262 (347)
T ss_pred hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE--EeccCCCCCCceEEecceEeecc------
Confidence 25566666666666777777777777666531 1112222 232 24677889884
Q ss_pred eccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 185 ETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 185 ~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
...|++.+.||++.+||-..
T Consensus 263 ------hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 263 ------HGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred ------cceEEEecCCceEEEecchh
Confidence 34556667799999998754
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.78 E-value=1e-17 Score=188.65 Aligned_cols=192 Identities=19% Similarity=0.221 Sum_probs=167.4
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEE-EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~-~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V 84 (633)
+.++++++.|+.|.+||..++..+.. +.+ |.+.|.++++..-+ .++++|+.|.+++|||+.++.+ .+.+.+|...|
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C-~~~l~gh~stv 294 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGEC-THSLQGHTSSV 294 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcE-EEEecCCCceE
Confidence 56888999999999999999998887 776 67778889998744 4899999999999999998886 68889999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006743 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163 (633)
Q Consensus 85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~ 163 (633)
.++... ..++++|+.|.+|++||+.++..+.++. |.++|.++..+ +.++++|+.||+|.+||+.+. ++++.+.
T Consensus 295 ~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-~cl~sl~- 368 (537)
T KOG0274|consen 295 RCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-KCLKSLS- 368 (537)
T ss_pred EEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-eeeeeec-
Confidence 999875 6778899999999999999999999996 99999999998 889999999999999999976 6677777
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC-CCCCccccc
Q 006743 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS-VTTSSVSLS 220 (633)
Q Consensus 164 ~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~-~~~ss~s~s 220 (633)
+|.++|+++.+.. . ..+++|+.|+.|++||++.. .+...+...
T Consensus 369 -gH~~~V~sl~~~~------------~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h 412 (537)
T KOG0274|consen 369 -GHTGRVYSLIVDS------------E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH 412 (537)
T ss_pred -CCcceEEEEEecC------------c-ceEEeeeeccceEeecCCchhhhhhhhcCC
Confidence 7999999998754 1 67888899999999999887 665555443
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.78 E-value=4.4e-18 Score=191.50 Aligned_cols=191 Identities=19% Similarity=0.287 Sum_probs=163.6
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V 84 (633)
-+.+|++|+.|.+++|||..+|++...+.+ |...+.++...+. ++++|+.|.+|++|++.++.. ++.+.+|..+|
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-h~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V 334 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQG-HTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPV 334 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecC-CCceEEEEEccCc---eEeeccCCceEEEEeccCcce-EEEeccccccE
Confidence 377999999999999999999999999996 7778888776543 788899999999999998874 67777899999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006743 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163 (633)
Q Consensus 85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~ 163 (633)
+++..+ +.++++|+.|++|++||+.+++++..+ +|...|+++.+... .+++.|+.|+.|++||+++..+++..+.
T Consensus 335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~- 410 (537)
T KOG0274|consen 335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ- 410 (537)
T ss_pred EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc-
Confidence 999998 889999999999999999999999888 69999999988755 8999999999999999998855556665
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccc
Q 006743 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (633)
Q Consensus 164 ~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~ 219 (633)
+|...+.++.+ ...+|++++.|++|++||.........+..
T Consensus 411 -~h~~~v~~l~~--------------~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 411 -GHTSLVSSLLL--------------RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred -CCccccccccc--------------ccceeEeccccccEEEeecccCceeeeecc
Confidence 78887866654 446788889999999999987766554433
No 78
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.78 E-value=7.8e-18 Score=175.60 Aligned_cols=188 Identities=20% Similarity=0.306 Sum_probs=153.9
Q ss_pred cCCCCEEEEEECCCcEEEEECCC-------------------------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEe
Q 006743 3 NCKDEHLASISLSGDLILHNLAS-------------------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG 57 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~t-------------------------gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs 57 (633)
.++|.++++|+.|..|.||+.+. +.++..+. .|.+.|.+|.|++.+ .+++++
T Consensus 202 ~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-GHt~~Vs~V~w~d~~--v~yS~S 278 (423)
T KOG0313|consen 202 DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-GHTEPVSSVVWSDAT--VIYSVS 278 (423)
T ss_pred cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-ccccceeeEEEcCCC--ceEeec
Confidence 46899999999999999999321 11233444 488899999999843 699999
Q ss_pred CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--ee--eEeeCCCCeEEEEEecC
Q 006743 58 DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PS--SCITYEAPFSSLAFIDD 133 (633)
Q Consensus 58 ~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk--~v--~~i~h~~~ItsLafSPd 133 (633)
.|.+|++||+.++... ..+ .....++|+..+|..++|++|+.|..|++||.|++. .+ ..++|.+.|.++.|+|.
T Consensus 279 wDHTIk~WDletg~~~-~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~ 356 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLK-STL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT 356 (423)
T ss_pred ccceEEEEEeecccce-eee-ecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC
Confidence 9999999999988853 333 345779999999999999999999999999999753 22 23479999999999996
Q ss_pred C-CEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 134 D-WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 134 G-~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
+ .+|++|+.|+++++||+|....++..+. +|...|.++.|. ++.++++|+.|++|+|+.-.+
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~--~h~DKvl~vdW~-------------~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIA--GHNDKVLSVDWN-------------EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcceeec--cCCceEEEEecc-------------CCceEEeccCcceEEEecccc
Confidence 5 5677899999999999999876776666 899999999986 456788889999999986544
No 79
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.6e-18 Score=192.95 Aligned_cols=190 Identities=19% Similarity=0.287 Sum_probs=163.9
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEE
Q 006743 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG 86 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vts 86 (633)
.+|++|+.||.|++||++..+....+.+ ..+.|++|+|+|...++|+++.+.|.+++||++........+..|.++|.|
T Consensus 147 ~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 147 NILISGSQDGTVKCWDLRSKKSKSTFRS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred cEEEecCCCceEEEEeeecccccccccc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 5889999999999999998888888876 778899999999888899999999999999999877667788999999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeEeeCCCCeEEEEEecCCCE-EEEEE--cCCeEEEEECCCCCCceEEE
Q 006743 87 ISFSSDDKIIASVGLDKKLYTYDPGSRRP--SSCITYEAPFSSLAFIDDDWI-LTAGT--SNGRVVFYDIRGKPQPLTVL 161 (633)
Q Consensus 87 LafSPdg~~LaSgS~DGtVrIWDlrtgk~--v~~i~h~~~ItsLafSPdG~~-LatGs--~DGsV~IWDlrs~~k~v~~l 161 (633)
+.|+|++.+||+|+.|+.|+|||+.+.+. ..++....++.+|+|-|+..+ |++++ .|-.|+|||++...-|..++
T Consensus 226 ~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~ 305 (839)
T KOG0269|consen 226 LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF 305 (839)
T ss_pred EeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee
Confidence 99999999999999999999999986543 455667889999999998654 55443 47789999999887787877
Q ss_pred eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 162 ~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
. .|...++.++|.. .+...+++++.|+.|..--++.
T Consensus 306 ~--eH~~~vt~i~W~~-----------~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 306 L--EHTDSVTGIAWDS-----------GDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred e--ccCccccceeccC-----------CCceeeEeecCccHHHHhhhhc
Confidence 7 7999999999965 3778889999999887765543
No 80
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1e-17 Score=171.46 Aligned_cols=194 Identities=18% Similarity=0.209 Sum_probs=155.7
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~-~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
..+|.++|+|+.|-+|+|||+...+.+..+.. |.+.|+++.|.+.-. ..|++|++||.|.+|+..... .+.+++.|.
T Consensus 50 AVs~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~ 127 (362)
T KOG0294|consen 50 AVSGPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHK 127 (362)
T ss_pred EecceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-Eeeeecccc
Confidence 45789999999999999999998888888775 678899999987642 248999999999999999886 478999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---------------------------------------
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE--------------------------------------- 122 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~--------------------------------------- 122 (633)
+.|+.++++|.+++.++.+.|+.++.||+-.|+.-......
T Consensus 128 ~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~ 207 (362)
T KOG0294|consen 128 GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN 207 (362)
T ss_pred cccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc
Confidence 99999999999999999999999999998665533222111
Q ss_pred -CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006743 123 -APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD 201 (633)
Q Consensus 123 -~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg 201 (633)
..+.|+.|. ++.+|++|+.|+.|.+||.... .+...+. +|...|..+.+-- ..++.+|++++.||
T Consensus 208 ~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~--AH~~RVK~i~~~~----------~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 208 PKRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFL--AHENRVKDIASYT----------NPEHEYLVTASSDG 273 (362)
T ss_pred cccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeee--cchhheeeeEEEe----------cCCceEEEEeccCc
Confidence 113333333 4567888899999999999874 4555555 7999999998543 23668889999999
Q ss_pred eEEccCCCCCC
Q 006743 202 SILMPDPLPSV 212 (633)
Q Consensus 202 ~IkIWDlr~~~ 212 (633)
.|+|||++...
T Consensus 274 ~I~vWd~~~~~ 284 (362)
T KOG0294|consen 274 FIKVWDIDMET 284 (362)
T ss_pred eEEEEEccccc
Confidence 99999998653
No 81
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=6.8e-18 Score=178.90 Aligned_cols=195 Identities=16% Similarity=0.250 Sum_probs=160.7
Q ss_pred CCCEEEEEECCCcEEEEECCCCcee---EEE-----------------eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEE
Q 006743 5 KDEHLASISLSGDLILHNLASGAKA---AEL-----------------KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL 64 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v---~~~-----------------~~~~~~~VssLafSpdg~~lLaSGs~DGtI~I 64 (633)
.|+++|.|+.|..|.|||+.-...+ ..+ ..+|.+.|-.+.|+..-+++|++|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3789999999999999998421110 000 11466777789999999999999999999999
Q ss_pred EECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeeEeeCCCCeEEEEEecCC-CEEEEEE
Q 006743 65 WDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDD-WILTAGT 141 (633)
Q Consensus 65 WDl~t~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtg-k~v~~i~h~~~ItsLafSPdG-~~LatGs 141 (633)
||+.++++ ...+..|...|.+++|+| ...+|++|+.|++|.+.|.|.. ..-..+...+.|-.++|+|.. ..++++.
T Consensus 271 WD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99999996 566778999999999999 8899999999999999999953 333455678899999999964 6677888
Q ss_pred cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 142 ~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
.||+|+-+|+|+..+++..++ .|.+.|.+|+++.. ...++.+++.|+.|++|++.-..+
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~--AHd~~ISgl~~n~~-----------~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLK--AHDDEISGLSVNIQ-----------TPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred CCceEEeeecCCCCCceeEEE--eccCCcceEEecCC-----------CCcceeeccccceEEEEeecCCCC
Confidence 999999999999888888888 89999999999875 344567788899999998854443
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.8e-17 Score=160.92 Aligned_cols=191 Identities=15% Similarity=0.204 Sum_probs=149.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC------C--------ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 006743 1 MYNCKDEHLASISLSGDLILHNLAS------G--------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~t------g--------k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWD 66 (633)
+|+|.|.+.++|++..+++|..... + ..+++-..||...|.|++|+|+|+ +|++|+.|++|++..
T Consensus 39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~ 117 (350)
T KOG0641|consen 39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLP 117 (350)
T ss_pred EecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCCceEEEEe
Confidence 5999999999999999988875421 1 122333457899999999999998 999999999999886
Q ss_pred CCCCCce---------------------------------------------------eEEeccCCCCeEEE-EEcCCCC
Q 006743 67 TTGRSPK---------------------------------------------------VSWLKQHSAPTAGI-SFSSDDK 94 (633)
Q Consensus 67 l~t~~~~---------------------------------------------------v~~l~~H~~~VtsL-afSPdg~ 94 (633)
.....+. .+.+.+|.+.|.++ .| ++-
T Consensus 118 fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~ 195 (350)
T KOG0641|consen 118 FNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGA 195 (350)
T ss_pred cccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCc
Confidence 5322111 11234455555444 23 367
Q ss_pred EEEEEeCCCeEEEEeCCCCceeeEee---C-----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC
Q 006743 95 IIASVGLDKKLYTYDPGSRRPSSCIT---Y-----EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS 166 (633)
Q Consensus 95 ~LaSgS~DGtVrIWDlrtgk~v~~i~---h-----~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H 166 (633)
+|++|+.|.+|++||++-..++..+. | ...|.+++..|.|+.|++|..|....+||++.+ .++..+. .|
T Consensus 196 m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~-r~iq~f~--ph 272 (350)
T KOG0641|consen 196 MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-RMIQRFH--PH 272 (350)
T ss_pred EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC-ceeeeeC--CC
Confidence 88899999999999999998888773 2 256999999999999999999999999999988 4444444 89
Q ss_pred CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 167 ~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
...|.|+.|+| +..++++++.|..|++-|+.
T Consensus 273 sadir~vrfsp------------~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 273 SADIRCVRFSP------------GAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred ccceeEEEeCC------------CceEEEEecccceEEEeecc
Confidence 99999999999 66778888999999999884
No 83
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.77 E-value=2.4e-17 Score=171.31 Aligned_cols=196 Identities=14% Similarity=0.212 Sum_probs=160.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
.+|+.+++++|+.|..-.+|++.++.....+.+ |++.|.++.|+.+|. +|++|+.+|.|+||+..++... ..+..--
T Consensus 72 l~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~Fshdgt-lLATGdmsG~v~v~~~stg~~~-~~~~~e~ 148 (399)
T KOG0296|consen 72 LHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGT-LLATGDMSGKVLVFKVSTGGEQ-WKLDQEV 148 (399)
T ss_pred eCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCce-EEEecCCCccEEEEEcccCceE-EEeeccc
Confidence 578889999999999999999999998888887 677788899999998 9999999999999999988743 3333455
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~ 160 (633)
..|.-+.|+|.+..|+.|+.||.|.+|.+.++...+.+ +|..++++=.|.|+|+.++++..||+|++||++++ +++..
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg-~p~~~ 227 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG-QPLHK 227 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-ceeEE
Confidence 67888999999999999999999999999986555555 79999999999999999999999999999999998 45555
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006743 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (633)
Q Consensus 161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~Ik 204 (633)
+.. .......++.++..+..++.| . .++...+.+..-++|.
T Consensus 228 ~~~-~e~~~~~~~~~~~~~~~~~~g-~-~e~~~~~~~~~sgKVv 268 (399)
T KOG0296|consen 228 ITQ-AEGLELPCISLNLAGSTLTKG-N-SEGVACGVNNGSGKVV 268 (399)
T ss_pred ecc-cccCcCCccccccccceeEec-c-CCccEEEEccccceEE
Confidence 543 235667888888888888777 2 2444444443344433
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.7e-18 Score=189.88 Aligned_cols=197 Identities=18% Similarity=0.254 Sum_probs=162.0
Q ss_pred CCCCEEEEEECCCcEEEEECCCCc------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEE
Q 006743 4 CKDEHLASISLSGDLILHNLASGA------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSW 76 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-~~v~~ 76 (633)
|++++|++||.||.|++|+..... .+..++ +|.+.|+++....+++ .|++++.|-+|++|+..... ....+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCcchhHhh
Confidence 567899999999999999985432 244555 5778888888888887 79999999999999996553 33677
Q ss_pred eccCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEeCCCCce--eeE---------e-eCCCCeEEEEEecCCCEEEEEEcC
Q 006743 77 LKQHSAPTAGISF-SSDDKIIASVGLDKKLYTYDPGSRRP--SSC---------I-TYEAPFSSLAFIDDDWILTAGTSN 143 (633)
Q Consensus 77 l~~H~~~VtsLaf-SPdg~~LaSgS~DGtVrIWDlrtgk~--v~~---------i-~h~~~ItsLafSPdG~~LatGs~D 143 (633)
+..|...|.|+++ .++...+|+|+.|+.|.+||+.++.. +.. . ++...|++++.++.|..|+.|+..
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE 192 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence 8999999999999 67899999999999999999997732 211 1 467889999999999999999999
Q ss_pred CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743 144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (633)
Q Consensus 144 GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~ 217 (633)
+.+++||.+++++..+ ++ +|...|.++-.++ ++..+++++.|++|++||++-..+..++
T Consensus 193 k~lr~wDprt~~kimk-Lr--GHTdNVr~ll~~d------------DGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMK-LR--GHTDNVRVLLVND------------DGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred cceEEeccccccceee-ee--ccccceEEEEEcC------------CCCeEeecCCCceEEeeeccccceeeeE
Confidence 9999999999864433 33 8999999999887 5566677788999999999876665554
No 85
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=2.3e-18 Score=178.62 Aligned_cols=196 Identities=19% Similarity=0.323 Sum_probs=160.2
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--------------
Q 006743 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-------------- 72 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~-------------- 72 (633)
..+++|+.||.|+|||+....+...++. |.+.|+.|++.. + .++++++|++|+.|.+...-.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~-~--~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh 155 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQ-T--SFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDH 155 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeec-ccCceeeEEecc-c--ceEEecCCcceeeeeccCCcceeeecccccccccc
Confidence 4578999999999999999889999986 777899999886 2 589999999999997432110
Q ss_pred -----------------------eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEE
Q 006743 73 -----------------------KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSL 128 (633)
Q Consensus 73 -----------------------~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsL 128 (633)
++..+.-....|.++.|+| ....|++|+.|+.|.+||+|++.++..+...-.-+.+
T Consensus 156 ~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~I 235 (433)
T KOG0268|consen 156 HRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTI 235 (433)
T ss_pred ccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccce
Confidence 0112222345678889999 7788899999999999999999999888777888899
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec----------------------
Q 006743 129 AFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET---------------------- 186 (633)
Q Consensus 129 afSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s---------------------- 186 (633)
+|+|.+..+++|.+|..++.||++....++.+.. +|...|.+++|+|.|+.+++++
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 9999888899999999999999999888888877 8999999999999988877553
Q ss_pred ---------cCCCCeEEEEeeCCCeEEccCC
Q 006743 187 ---------TCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 187 ---------~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
++.|..++++|+.|+.|++|.-
T Consensus 314 RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 314 RMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 3446667777777777777754
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=4.6e-17 Score=174.23 Aligned_cols=177 Identities=21% Similarity=0.279 Sum_probs=147.2
Q ss_pred ccCCCC-EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 2 YNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 2 FSpdG~-~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
|+|+++ .+++|+.|+.+++||+.+......+.+ |.+.|+|.+|+|..++++++|+.||+|++||++.....+. -..|
T Consensus 118 f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~-elnh 195 (487)
T KOG0310|consen 118 FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV-ELNH 195 (487)
T ss_pred ecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE-EecC
Confidence 666655 677888899999999988876556665 7888999999999999999999999999999988753333 4569
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
..+|..+.+-|.|..|++++.. .|++||+-+|. .+... .|...|+|+++..++..|++|+-||.|++||+.+.
T Consensus 196 g~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---- 270 (487)
T KOG0310|consen 196 GCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---- 270 (487)
T ss_pred CCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce----
Confidence 9999999999999999999865 69999998654 44444 49999999999999999999999999999997665
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
++.......++|.+++.+|+++.++.+
T Consensus 271 Kvv~s~~~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 271 KVVHSWKYPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEEEeeecccceeeEEecCCCceEEEe
Confidence 445555678999999999976655554
No 87
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=6.3e-19 Score=194.97 Aligned_cols=192 Identities=19% Similarity=0.236 Sum_probs=167.6
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt 85 (633)
++.+++|+.|-.+-+|.+.....+..+.+ |...|.+|.|+.... +|++|..+|+|++||++..+. ++++.+|...+.
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~-hespIeSl~f~~~E~-LlaagsasgtiK~wDleeAk~-vrtLtgh~~~~~ 116 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNAITSLTG-HESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAKI-VRTLTGHLLNIT 116 (825)
T ss_pred ceeeccCCCceeeccccccCCchhheeec-cCCcceeeecCcchh-hhcccccCCceeeeehhhhhh-hhhhhccccCcc
Confidence 56788899999999999877666777776 778899999999987 899999999999999998774 789999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec
Q 006743 86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC 164 (633)
Q Consensus 86 sLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~ 164 (633)
.+.|+|.+.+++.|+.|+.+++||++...+...+ .|...+.++.|+|+|++++.|++|..|+|||...+ +....+.
T Consensus 117 sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~-- 193 (825)
T KOG0267|consen 117 SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFK-- 193 (825)
T ss_pred eeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc-ccccccc--
Confidence 9999999999999999999999999987777777 58888999999999999999999999999999877 3333334
Q ss_pred CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCC
Q 006743 165 SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS 215 (633)
Q Consensus 165 ~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~s 215 (633)
.|.+.|.++.|+| .+.++..|+.|+.+++||+..|....
T Consensus 194 ~~e~~v~sle~hp------------~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 194 SHEGKVQSLEFHP------------LEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred cccccccccccCc------------hhhhhccCCCCceeeeeccceeEEee
Confidence 6999999999999 56677778889999999999666544
No 88
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=5.5e-17 Score=182.73 Aligned_cols=193 Identities=12% Similarity=0.164 Sum_probs=156.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|+. .++|++++.|.+|++|++...++++.|. |.+.|+||+|+|.++++|++|+-||.|+||++...+ +..+..-.
T Consensus 377 WSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~ 451 (712)
T KOG0283|consen 377 WSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLR 451 (712)
T ss_pred ccc-CCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehhhh
Confidence 555 4588999999999999999999999997 889999999999988899999999999999998877 45556666
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---------CCCCeEEEEEecC-CCEEEEEEcCCeEEEEEC
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDD-DWILTAGTSNGRVVFYDI 151 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---------h~~~ItsLafSPd-G~~LatGs~DGsV~IWDl 151 (633)
.-|++++|.|||+..++|+.+|.+++|+.+..+.+.... ....|+.+.|.|. ...|++.+.|..|+|||.
T Consensus 452 ~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 452 DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 899999999999999999999999999999877654331 1237999999984 456888899999999999
Q ss_pred CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 152 rs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
+.. .++..++.+.....-....|..+ +.++++++.|..|+||+...+.
T Consensus 532 ~~~-~lv~KfKG~~n~~SQ~~Asfs~D------------gk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 532 RDK-DLVHKFKGFRNTSSQISASFSSD------------GKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred cch-hhhhhhcccccCCcceeeeEccC------------CCEEEEeecCceEEEEeCCCCc
Confidence 776 45555664444444455666664 4555556789999999885443
No 89
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.74 E-value=5.3e-17 Score=186.82 Aligned_cols=150 Identities=13% Similarity=0.272 Sum_probs=129.7
Q ss_pred ccCCCCEEEEEE--CCCcEEEEECCC------------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC
Q 006743 2 YNCKDEHLASIS--LSGDLILHNLAS------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT 67 (633)
Q Consensus 2 FSpdG~~LaSgs--~DG~I~IWDl~t------------gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl 67 (633)
.+|||..+++|+ .||.+.||+... .+.++... .|...|.|+.|++||. +||+|++|+.|.||+.
T Consensus 21 v~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 21 VHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGS-YLASGSDDRLVMIWER 98 (942)
T ss_pred ecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCC-eEeeccCcceEEEeee
Confidence 479999999999 899999998742 12334444 3778899999999998 8999999999999998
Q ss_pred CC----CC-------------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEE
Q 006743 68 TG----RS-------------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLA 129 (633)
Q Consensus 68 ~t----~~-------------~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLa 129 (633)
.. .. ..+..+.+|...|.+++|+|++.+|++++.|++|.|||.++.+.+..+ +|.+.|..+.
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs 178 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVS 178 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceE
Confidence 72 00 125668899999999999999999999999999999999999877777 6999999999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCC
Q 006743 130 FIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 130 fSPdG~~LatGs~DGsV~IWDlrs 153 (633)
|+|-|+||++-+.|++|+||+...
T Consensus 179 ~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 179 WDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred ECCccCeeeeecCCceEEEEEccc
Confidence 999999999999999999999664
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.3e-17 Score=170.41 Aligned_cols=189 Identities=14% Similarity=0.244 Sum_probs=163.9
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC------CCC-----------
Q 006743 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT------TGR----------- 70 (633)
Q Consensus 8 ~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl------~t~----------- 70 (633)
.+.+++.|.+.+||.+++++++..+.+ |.+.|++|+|++.+. ++++++.|++.+||.. ...
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNsikfh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTG-HTGSVNSIKFHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred ceeecccccceeEEeeccccceeeecc-cccceeeEEeccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 567889999999999999999999997 667789999999987 8999999999999962 110
Q ss_pred ----------------------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEE
Q 006743 71 ----------------------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSS 127 (633)
Q Consensus 71 ----------------------~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~Its 127 (633)
..++..+.+|...|.+..|...++.+++++.|.+..+||++++.++..+ +|....+.
T Consensus 240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtH 319 (481)
T KOG0300|consen 240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTH 319 (481)
T ss_pred hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccc
Confidence 0113457789999999999999999999999999999999999999888 69999999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743 128 LAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (633)
Q Consensus 128 LafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD 207 (633)
++-+|..+.+++.+.|-+.++||.+..-+.+.++. +|...|+++.|..+ ..+++++.|.+|||||
T Consensus 320 cstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ--GHtdtVTS~vF~~d-------------d~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 320 CSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ--GHTDTVTSVVFNTD-------------DRVVSGSDDRTVKVWD 384 (481)
T ss_pred cccCCcceEEEEeccCceeEeccchhhcceeeeec--ccccceeEEEEecC-------------CceeecCCCceEEEee
Confidence 99999999999999999999999997666666666 99999999999863 3567888899999999
Q ss_pred CCCCCC
Q 006743 208 PLPSVT 213 (633)
Q Consensus 208 lr~~~~ 213 (633)
++....
T Consensus 385 LrNMRs 390 (481)
T KOG0300|consen 385 LRNMRS 390 (481)
T ss_pred eccccC
Confidence 996543
No 91
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=5e-17 Score=180.61 Aligned_cols=191 Identities=15% Similarity=0.145 Sum_probs=160.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC-----CceeEEEeCC------CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLAS-----GAKAAELKDP------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~t-----gk~v~~~~~~------~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~ 70 (633)
.+||++.+++|+.|.+|++||..- +...+.+.-+ -.+.|.|+.++||++ +|+.+--|.+|+||-+.+-
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtl 540 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTL 540 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEecce
Confidence 478999999999999999999741 1111111111 245688899999998 8999999999999999988
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 006743 71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (633)
Q Consensus 71 ~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IW 149 (633)
+. ...+.+|.-+|.|+..+||++.+++|+.|+.|+||-+.-|.|.+.+ +|.+.|.++.|.|....+++++.|+.|+-|
T Consensus 541 KF-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 541 KF-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred ee-eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence 85 4578999999999999999999999999999999999988887655 899999999999999999999999999999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
|-.+.. .+..+. +|...|+|++..|+|.+++ +++.|..|++|.-.
T Consensus 620 Dg~kFe-~iq~L~--~H~~ev~cLav~~~G~~vv------------s~shD~sIRlwE~t 664 (888)
T KOG0306|consen 620 DGEKFE-EIQKLD--GHHSEVWCLAVSPNGSFVV------------SSSHDKSIRLWERT 664 (888)
T ss_pred chhhhh-hheeec--cchheeeeeEEcCCCCeEE------------eccCCceeEeeecc
Confidence 988763 344444 8999999999999666554 45779999999653
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.74 E-value=1e-16 Score=169.59 Aligned_cols=191 Identities=17% Similarity=0.230 Sum_probs=157.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~-~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
.+|.|+||++++.||.+...|+.++..+...... ..-.+++.+|+|||- +|.+|..|+.|+|||+.... .+..+.+|
T Consensus 311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~-~~a~Fpgh 388 (506)
T KOG0289|consen 311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQT-NVAKFPGH 388 (506)
T ss_pred eccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCcc-ccccCCCC
Confidence 4789999999999999999999999988887642 334588899999997 99999999999999998877 46788999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
.++|..++|+.+|-+++++++|+.|++||+|..+....+. ....+.+++|++.|.+|+.++.|=+|++++-.+. .--
T Consensus 389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k-~W~ 467 (506)
T KOG0289|consen 389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK-SWT 467 (506)
T ss_pred CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccc-cce
Confidence 9999999999999999999999999999999988777774 3446999999999999999988877888775543 222
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD 207 (633)
.......|.+..+++.|... ..++++++.|..++++-
T Consensus 468 ~~~~~~~~sg~st~v~Fg~~------------aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 468 EIKELADHSGLSTGVRFGEH------------AQYLASTSMDAILRLYA 504 (506)
T ss_pred eeehhhhcccccceeeeccc------------ceEEeeccchhheEEee
Confidence 23333468888999998774 44555556777777653
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=5.6e-17 Score=178.08 Aligned_cols=192 Identities=20% Similarity=0.270 Sum_probs=159.5
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCCc-------
Q 006743 3 NCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDY-SRNSRHLLVTAGDDGTLHLWDTTGRSP------- 72 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLaf-Spdg~~lLaSGs~DGtI~IWDl~t~~~------- 72 (633)
..+|+.|++++.|-+|++|+...+. +...+. .|.+.|.|+++ .++. .++|+|+-|+.|.|||+..+..
T Consensus 82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred hcCCCceEEecCCceEEEeecccCcchhHhhhh-cccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhcc
Confidence 4578899999999999999987663 444454 47888999999 5554 4899999999999999986521
Q ss_pred --eeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743 73 --KVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (633)
Q Consensus 73 --~v~~l~-~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~I 148 (633)
....+. ++...|++++.++.+..|++|+..+.|++||.++++.+..+ +|...|.++..++||..+++++.||+|++
T Consensus 160 ~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 160 NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEe
Confidence 122233 78899999999999999999999999999999998766554 89999999999999999999999999999
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (633)
Q Consensus 149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~ 211 (633)
||+... +++..+. .|...|+++..+|+ -..+++|+.|+.|..-|++.+
T Consensus 240 WdLgqQ-rCl~T~~--vH~e~VWaL~~~~s------------f~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 240 WDLGQQ-RCLATYI--VHKEGVWALQSSPS------------FTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eecccc-ceeeeEE--eccCceEEEeeCCC------------cceEEecCCCCcEEecccCCc
Confidence 999987 4555555 78889999998874 445666778999999999876
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.74 E-value=1.1e-16 Score=160.47 Aligned_cols=196 Identities=15% Similarity=0.237 Sum_probs=163.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEE--eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAEL--KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~--~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~ 78 (633)
+|+.+|.+|++|+.|+++.+|+++..+..... .+ |.+.|..++|.|....+|++++.|++|++||++..++.. .+.
T Consensus 27 ~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~g-h~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~-~i~ 104 (313)
T KOG1407|consen 27 AWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRG-HTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA-RIE 104 (313)
T ss_pred EEcccCceeeecccCCceEEEEecchhhhhhhcccC-CCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE-Eee
Confidence 58999999999999999999999877655443 34 444556689998887799999999999999999988643 333
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
.. ..-.-+.|+|+|.+++.++.|..|.+.|.++.+..........+.-++|+-++.+++.....|.|.|...... +++
T Consensus 105 ~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv 182 (313)
T KOG1407|consen 105 TK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPV 182 (313)
T ss_pred cc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccc-ccc
Confidence 33 3334578999999999999999999999999998888888888999999999999999999999999998865 566
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ 214 (633)
..++ +|.....||.|+|+|+|++++ +.|..+-+||+....+.
T Consensus 183 ~si~--AH~snCicI~f~p~GryfA~G------------sADAlvSLWD~~ELiC~ 224 (313)
T KOG1407|consen 183 QSIK--AHPSNCICIEFDPDGRYFATG------------SADALVSLWDVDELICE 224 (313)
T ss_pred cccc--cCCcceEEEEECCCCceEeec------------cccceeeccChhHhhhh
Confidence 6676 899999999999977666555 77999999999866653
No 95
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.73 E-value=1.5e-17 Score=177.86 Aligned_cols=177 Identities=18% Similarity=0.226 Sum_probs=152.6
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
+.+||+.|++|+.-.+|.|||+....... ++.. ....+.+++.+||.. +.++++.||.|.|||+.+.. +++.+.+
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaelts-sapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~-~VrqfqG 549 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT-LVRQFQG 549 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCC-cchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce-eeecccC
Confidence 46899999999999999999998654332 2322 345677899999987 88899999999999999877 5889999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~ 159 (633)
|.+.+.||.+++||..|.+|+-|++||.||++.++.+........|.++-++|.+.+|++|-.++.|.|.......
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---- 625 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---- 625 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc----
Confidence 9999999999999999999999999999999999988888888999999999999999999999999998887663
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 160 VLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 160 ~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
.+...-|...|.++.|.+.|+++++.
T Consensus 626 kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 626 KYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred ceeecccccEEEEEEecccCceeeec
Confidence 23444799999999999988777644
No 96
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.3e-17 Score=162.25 Aligned_cols=195 Identities=14% Similarity=0.204 Sum_probs=155.8
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC---ceeEEEeCCCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCCc-eeEE
Q 006743 3 NCKDEHLASISLSGDLILHNLASG---AKAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRSP-KVSW 76 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tg---k~v~~~~~~~~~~VssLafSp--dg~~lLaSGs~DGtI~IWDl~t~~~-~v~~ 76 (633)
...|++||+|+.|+.|+|+.+..+ +.+.++.+ |.++|.-++|.. .|. +|++++.||.|.||.-.++.. +...
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCc-EeeEeecCceEEEEecCCCchhhhhh
Confidence 345899999999999999998754 46677887 666777789975 566 999999999999999877652 2344
Q ss_pred eccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCC-c-ee--eEeeCCCCeEEEEEecC---C-----------CE
Q 006743 77 LKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSR-R-PS--SCITYEAPFSSLAFIDD---D-----------WI 136 (633)
Q Consensus 77 l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlrtg-k-~v--~~i~h~~~ItsLafSPd---G-----------~~ 136 (633)
...|...|++++|.| .|-.|++++.||.|.|.+.+.. . .. ....|.-.|++++|.|. | +.
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 567999999999999 6788999999999999998864 2 11 22369999999999995 4 67
Q ss_pred EEEEEcCCeEEEEECCCCCCc-eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 137 LTAGTSNGRVVFYDIRGKPQP-LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 137 LatGs~DGsV~IWDlrs~~k~-v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
|++|+.|..|+||+..+..-. .+.+. +|.+.|..++|.|.- .-...++++++.|++|.||-.+
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~~e~~l~--~H~dwVRDVAwaP~~--------gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWKLERTLE--GHKDWVRDVAWAPSV--------GLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred eeccCCccceeeeecCCcchhhhhhhh--hcchhhhhhhhcccc--------CCCceeeEEecCCCcEEEEEec
Confidence 999999999999999875211 12233 899999999999952 2355678999999999999654
No 97
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.72 E-value=3.3e-16 Score=157.15 Aligned_cols=194 Identities=14% Similarity=0.254 Sum_probs=157.7
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-----------
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK----------- 73 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~----------- 73 (633)
+...+++++.|..|++||...++++..+.. ..+.+. +.|+|+|. +++.++.|..|...|.++.+..
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i~~-~~eni~-i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne 152 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARIET-KGENIN-ITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNE 152 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEeec-cCcceE-EEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceeee
Confidence 456899999999999999999999988875 445555 78999998 7888999988888887543311
Q ss_pred -----------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCC
Q 006743 74 -----------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEA 123 (633)
Q Consensus 74 -----------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~ 123 (633)
+..++.|.....||.|+|+|++||+|+.|..+.+||+..--+++.+ .+.-
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw 232 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW 232 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC
Confidence 3456789999999999999999999999999999999998888888 5889
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeE
Q 006743 124 PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSI 203 (633)
Q Consensus 124 ~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~I 203 (633)
+|..+.|+.||++||+|++|..|-|=+++++.+... + .+.++...++|+|....|+.+.+..++. .....+.|
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e-I---~~~~~t~tVAWHPk~~LLAyA~ddk~~d---~~reag~v 305 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE-I---PCEGPTFTVAWHPKRPLLAYACDDKDGD---SNREAGTV 305 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEE-e---eccCCceeEEecCCCceeeEEecCCCCc---ccccccee
Confidence 999999999999999999999999999999864332 2 4789999999999888887664444431 11223677
Q ss_pred EccCC
Q 006743 204 LMPDP 208 (633)
Q Consensus 204 kIWDl 208 (633)
|+|-+
T Consensus 306 KiFG~ 310 (313)
T KOG1407|consen 306 KIFGL 310 (313)
T ss_pred EEecC
Confidence 77644
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=8e-17 Score=171.40 Aligned_cols=192 Identities=17% Similarity=0.222 Sum_probs=158.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
|.++||+|||+|+.|..|.||+..+.+.+..+++ |.+.|.+++|-... +-+++++.|+.|++|++..... +.++.+|
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~-vetlyGH 285 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSY-VETLYGH 285 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhhcccc-cccceeeeeeecCc-cceeeeecCCceEEEehhHhHH-HHHHhCC
Confidence 4689999999999999999999999999999886 67778889997554 4799999999999999987773 6788999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~ 160 (633)
...|.+|....-.+.+.+|+.|+++++|++.....+...++.+.+.|++|-.+ ..+++|+.||.|.+|++-+. +|+.+
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK-kplf~ 363 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK-KPLFT 363 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc-CceeE
Confidence 99999999887778888888999999999966555555578889999999855 57889999999999999877 45554
Q ss_pred EeecCC-----------CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 161 LRACSS-----------SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 161 l~~~~H-----------~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
... +| ..+|++++..| +..++++|+.+|.|++|-+..
T Consensus 364 ~~~-AHgv~~~~~~~~~~~Witsla~i~------------~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 364 SRL-AHGVIPELDPVNGNFWITSLAVIP------------GSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred eec-cccccCCccccccccceeeeEecc------------cCceEEecCCCCceEEEEecC
Confidence 432 22 22788888777 566777778899999997643
No 99
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=9.2e-17 Score=163.24 Aligned_cols=191 Identities=16% Similarity=0.177 Sum_probs=152.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCc------ee----EE----EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743 5 KDEHLASISLSGDLILHNLASGA------KA----AE----LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk------~v----~~----~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~ 70 (633)
.|+|+++|+.||.|.+||++... .+ +. ....|+..|..+.|.|.+.-.|.+++-|.+++|||..+.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 58899999999999999997532 11 11 123467788999999988778999999999999999987
Q ss_pred CceeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCE-EEEEEcCCe
Q 006743 71 SPKVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWI-LTAGTSNGR 145 (633)
Q Consensus 71 ~~~v~~l~~H~~~VtsLafSP---dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~-LatGs~DGs 145 (633)
+. .......+.|+.-+|+| ...+|++|..|-.|++.|+.+|.....+ +|.+.|.++.|+|...+ |++|+.||.
T Consensus 135 Q~--a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ 212 (397)
T KOG4283|consen 135 QE--AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA 212 (397)
T ss_pred ee--eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence 73 33445678899999999 4678889999999999999999998888 79999999999997655 668999999
Q ss_pred EEEEECCCCCCceEEEe------------ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 146 VVFYDIRGKPQPLTVLR------------ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 146 V~IWDlrs~~k~v~~l~------------~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
|++||+|...-++.++. ...|.+.|.+++|..++.+ +++++.|..+++|+..
T Consensus 213 irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~------------l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 213 IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY------------LASCGTDDRIRVWNME 276 (397)
T ss_pred EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh------------hhhccCccceEEeecc
Confidence 99999996533333332 3467888889998875544 4555779999999763
No 100
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.72 E-value=9e-18 Score=171.95 Aligned_cols=190 Identities=14% Similarity=0.153 Sum_probs=159.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
.|+.|.+.||+|+.||.|+||.+.+|.+++.|...|...|+|+.|+.|+. .+++++.|.+++|.-+..+++ .+.+++|
T Consensus 270 ~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~-LKEfrGH 347 (508)
T KOG0275|consen 270 SFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKC-LKEFRGH 347 (508)
T ss_pred eecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchh-HHHhcCc
Confidence 38889999999999999999999999999999877888899999999998 688999999999999998885 5778999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee----------------------------------------
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------------------------------------- 120 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---------------------------------------- 120 (633)
...|+...|.++|.++++++.||+|++|+.++..++.++.
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV 427 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence 9999999999999999999999999999987654432221
Q ss_pred --------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 006743 121 --------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET 192 (633)
Q Consensus 121 --------h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~ 192 (633)
..+...+++.+|.|.++.+.++|+.++.|...+++ ..+.+. .|...|..++-+|..+.++
T Consensus 428 rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~-LE~tl~--VhEkdvIGl~HHPHqNllA--------- 495 (508)
T KOG0275|consen 428 RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK-LERTLP--VHEKDVIGLTHHPHQNLLA--------- 495 (508)
T ss_pred eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc-eeeeee--cccccccccccCcccchhh---------
Confidence 12334466788899999999999999999988773 334444 6888889999888554444
Q ss_pred EEEEeeCCCeEEccC
Q 006743 193 ALLGGAVGDSILMPD 207 (633)
Q Consensus 193 lLlSgs~Dg~IkIWD 207 (633)
+-+.|+.+++|.
T Consensus 496 ---sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 ---SYSEDGLLKLWK 507 (508)
T ss_pred ---hhcccchhhhcC
Confidence 446799999995
No 101
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.3e-16 Score=173.47 Aligned_cols=194 Identities=17% Similarity=0.281 Sum_probs=155.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-C
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-H 80 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~-H 80 (633)
|+ ..+.|++|. ...|++|+..+++.......+ ...|+++.|+++|. +|++|..+|.|.|||....+. +..+.. |
T Consensus 185 Ws-s~n~laVal-g~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~-~~~~~~~h 259 (484)
T KOG0305|consen 185 WS-SANVLAVAL-GQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKK-TRTLRGSH 259 (484)
T ss_pred cc-cCCeEEEEe-cceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhccc-cccccCCc
Confidence 44 345666664 558999999888855555433 67889999999998 899999999999999987774 566677 9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE-e-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~-i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
...|-+++|+ ...+.+|+.|+.|..+|++..+.... + .|...|..+.|++|+.++|+|+.|+.|.|||..... +.
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PK 336 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-cc
Confidence 9999999999 78899999999999999998765544 3 699999999999999999999999999999996653 33
Q ss_pred EEEeecCCCCCeeEEEEccCCC-eEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCC
Q 006743 159 TVLRACSSSEAVSSLCWQRAKP-VFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS 215 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~-~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~s 215 (633)
..+. .|...|.+++|+|-.. .||++ +|+.|+.|++||+..-....
T Consensus 337 ~~~~--~H~aAVKA~awcP~q~~lLAsG----------GGs~D~~i~fwn~~~g~~i~ 382 (484)
T KOG0305|consen 337 FTFT--EHTAAVKALAWCPWQSGLLATG----------GGSADRCIKFWNTNTGARID 382 (484)
T ss_pred EEEe--ccceeeeEeeeCCCccCceEEc----------CCCcccEEEEEEcCCCcEec
Confidence 4444 7999999999999432 23332 23459999999997544433
No 102
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=1.5e-16 Score=176.87 Aligned_cols=199 Identities=16% Similarity=0.174 Sum_probs=166.7
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC------CCceeE
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG------RSPKVS 75 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t------~~~~v~ 75 (633)
|-|.++++++|...|.+.+||+.+...+..++. |.+.+..++..|++. .+++|+.|++|++||..- .+.++.
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A-HdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~l 497 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLASASLVETIRA-HDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVL 497 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeehhhhhhhhhc-cccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceee
Confidence 678889999999999999999999888888874 778889999999998 799999999999999731 111111
Q ss_pred -----EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 006743 76 -----WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-CITYEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (633)
Q Consensus 76 -----~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~-~i~h~~~ItsLafSPdG~~LatGs~DGsV~IW 149 (633)
....-...|.|+.++||+++|+++--|++|+||-+.+-+... .++|.-+|.||.++||++.+++|+.|..|+||
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 112345789999999999999999999999999999877654 44899999999999999999999999999999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~ 217 (633)
-+.-+.+ .+.+ ++|...|.++.|.| ...++++++.|+.|+.||-..|.....+
T Consensus 578 GLdFGDC-HKS~--fAHdDSvm~V~F~P------------~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 578 GLDFGDC-HKSF--FAHDDSVMSVQFLP------------KTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred ccccchh-hhhh--hcccCceeEEEEcc------------cceeEEEecCcceEEeechhhhhhheee
Confidence 9987743 2333 37999999999999 5677788899999999998887765544
No 103
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.71 E-value=2.4e-16 Score=181.41 Aligned_cols=191 Identities=16% Similarity=0.244 Sum_probs=151.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC------------------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEE
Q 006743 2 YNCKDEHLASISLSGDLILHNLAS------------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLH 63 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~t------------------gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~ 63 (633)
|++||++||+|+.|+.|.||+... .+.+..+.+ |..-|.+++|+|++. +|++++.|++|.
T Consensus 77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~-~lvS~s~DnsVi 154 (942)
T KOG0973|consen 77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDS-LLVSVSLDNSVI 154 (942)
T ss_pred ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCcc-EEEEecccceEE
Confidence 899999999999999999999762 124556666 556677899999988 999999999999
Q ss_pred EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------------------------
Q 006743 64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR----------------------------- 114 (633)
Q Consensus 64 IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk----------------------------- 114 (633)
||+..+.+ .+..+++|...|..+.|.|-|++|++-+.|++|+||++.+..
T Consensus 155 iwn~~tF~-~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~ 233 (942)
T KOG0973|consen 155 IWNAKTFE-LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHH 233 (942)
T ss_pred EEccccce-eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence 99999985 588999999999999999999999999999999999952210
Q ss_pred ------------------------eeeEeeCCCCeEEEEEecC-----CC------------EEEEEEcCCeEEEEECCC
Q 006743 115 ------------------------PSSCITYEAPFSSLAFIDD-----DW------------ILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 115 ------------------------~v~~i~h~~~ItsLafSPd-----G~------------~LatGs~DGsV~IWDlrs 153 (633)
....++|.+++.+++|+|. .+ ++|+|+.|+.|.||....
T Consensus 234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 0122368889999999982 12 688999999999999865
Q ss_pred CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 154 ~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
. +|+.+... -....|..++|+|||-.| +.++.||+|.+.++.
T Consensus 314 ~-RPl~vi~~-lf~~SI~DmsWspdG~~L------------facS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 314 P-RPLFVIHN-LFNKSIVDMSWSPDGFSL------------FACSLDGTVALIHFE 355 (942)
T ss_pred C-Cchhhhhh-hhcCceeeeeEcCCCCeE------------EEEecCCeEEEEEcc
Confidence 5 45544432 245789999999965554 444667777766553
No 104
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.71 E-value=7.3e-17 Score=169.85 Aligned_cols=188 Identities=17% Similarity=0.281 Sum_probs=146.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC--------------
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-------------- 67 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl-------------- 67 (633)
|.++++++++++.|+.+++|++...+...++.+ |.+.|+++.|..... .+++|+.|.+|++||+
T Consensus 227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred ecCCCceEEeecCCCceeeeeccchhhhhhhcc-cccceeeehhhcccc-ceeeccccchhhhhhhhhhheecccccccc
Confidence 778899999999999999999999988888887 667777777765543 3555555555555555
Q ss_pred -------------------------CCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--
Q 006743 68 -------------------------TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-- 120 (633)
Q Consensus 68 -------------------------~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-- 120 (633)
+...+ ......+ +.|+++..++++..+.+++.|.++.+.|+++......+.
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~-~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADK-TRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCce-eeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc
Confidence 33332 2222333 479999999999999999999999999999988877763
Q ss_pred ---CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 006743 121 ---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG 197 (633)
Q Consensus 121 ---h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSg 197 (633)
.....+.++|+|++.|+++|+.||.|+||++.++ ++.+.+........|++++|+|.|.+++++
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~s~~aI~s~~W~~sG~~Llsa------------ 449 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLSTSNAAITSLSWNPSGSGLLSA------------ 449 (459)
T ss_pred ccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCCCCcceEEEEEcCCCchhhcc------------
Confidence 3455889999999999999999999999999988 555666654444479999999976666554
Q ss_pred eCCCeEEcc
Q 006743 198 AVGDSILMP 206 (633)
Q Consensus 198 s~Dg~IkIW 206 (633)
+.++.+.+|
T Consensus 450 dk~~~v~lW 458 (459)
T KOG0288|consen 450 DKQKAVTLW 458 (459)
T ss_pred cCCcceEec
Confidence 557778887
No 105
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=166.86 Aligned_cols=177 Identities=18% Similarity=0.330 Sum_probs=137.8
Q ss_pred ccCCC-CEEEEEECCCcEEEEECCCCcee---EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEE
Q 006743 2 YNCKD-EHLASISLSGDLILHNLASGAKA---AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSW 76 (633)
Q Consensus 2 FSpdG-~~LaSgs~DG~I~IWDl~tgk~v---~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-~~v~~ 76 (633)
|+|-. ..|++|..-+.|++|...++.-. ..+.+ |...|..++|+|..+.+|++|+.||+|+|||++.+. .....
T Consensus 219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred cccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE
Confidence 56522 24778888889999999887643 23445 778889999999999999999999999999998763 22344
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeeEe-eCCCCeEEEEEecC-CCEEEEEEcCCeEEEEEC
Q 006743 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---RRPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDI 151 (633)
Q Consensus 77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt---gk~v~~i-~h~~~ItsLafSPd-G~~LatGs~DGsV~IWDl 151 (633)
.+.|...|+.|.|+.+-.+|++|+.||+++|||+|. ++++..+ .|..+|+++.|+|. ...|++++.|..|.|||+
T Consensus 298 ~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 298 TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 589999999999999777999999999999999986 5566666 49999999999995 567889999999999998
Q ss_pred CCCCC---------------ceEEEeecCCCCCeeEEEEccCC
Q 006743 152 RGKPQ---------------PLTVLRACSSSEAVSSLCWQRAK 179 (633)
Q Consensus 152 rs~~k---------------~v~~l~~~~H~~~VtsLafsPdg 179 (633)
.-... |-..+-.+.-...|..+.|+++-
T Consensus 378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Qi 420 (440)
T KOG0302|consen 378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQI 420 (440)
T ss_pred eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCC
Confidence 64221 11122211224568889999863
No 106
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.1e-17 Score=185.24 Aligned_cols=178 Identities=20% Similarity=0.315 Sum_probs=156.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|+.+..+|++|..+|+|++||++.++.++.+.+|... +..|.|+|.+. +++.|+.|+.+++||++...+ .+.+.+|.
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~-~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~ 154 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN-ITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGC-SHTYKSHT 154 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhhhhhhhccccC-cceeeeccceE-EeccccccccceehhhhccCc-eeeecCCc
Confidence 6777888999999999999999999999999885544 45589999998 789999999999999996664 67788999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~ 160 (633)
..|.+++|+|+|++++++++|.+++|||+..|+....+. |++.+..+.|+|..-.++.|+.|++|++||+++.. .+.
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe-~I~- 232 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE-VIS- 232 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE-Eee-
Confidence 999999999999999999999999999999999998885 99999999999999999999999999999999752 111
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEe
Q 006743 161 LRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 161 l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
........|.+..|+|++..+.++
T Consensus 233 -s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 233 -SGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred -ccCCccCCceeeeecCCceeeecC
Confidence 112346789999999999888876
No 107
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.71 E-value=1.4e-16 Score=162.80 Aligned_cols=151 Identities=17% Similarity=0.243 Sum_probs=130.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCcee---EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKA---AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v---~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l 77 (633)
.|+|....|++|+.|++|++||....... +.++ ....|+++.|+|.|+ +|+.|.+-.++++||+.+.++.+...
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q--d~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHHHHhh--ccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecC
Confidence 48999999999999999999998653322 2233 457899999999999 89999999999999999887654432
Q ss_pred --ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--C-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 78 --KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--Y-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 78 --~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h-~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
.+|.+.|+++.+++.+++.++++.||.|++||--+++++..++ | +..|.+..|..+|+||++.+.|..|++|.+.
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 4689999999999999999999999999999999999998884 4 4569999999999999999999999999998
Q ss_pred CC
Q 006743 153 GK 154 (633)
Q Consensus 153 s~ 154 (633)
++
T Consensus 336 t~ 337 (430)
T KOG0640|consen 336 TG 337 (430)
T ss_pred CC
Confidence 76
No 108
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=3e-16 Score=155.53 Aligned_cols=161 Identities=20% Similarity=0.351 Sum_probs=142.8
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 006743 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR 114 (633)
Q Consensus 35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk 114 (633)
.+.+.|+++.|+-+|+ +.++++.|++|++|+...+.. +++..+|...|.+++.+.|...|++|+.|+.|.+||+.+|+
T Consensus 15 ~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~l-iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGAL-IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK 92 (307)
T ss_pred ccccceEEEEEccCCC-EEEEcCCCceEEeecccccce-eeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe
Confidence 3678899999999998 899999999999999987774 78899999999999999999999999999999999999999
Q ss_pred eeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 006743 115 PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET 192 (633)
Q Consensus 115 ~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~-~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~ 192 (633)
.++.+ +|.+.|+.++|+.+...+++|+.|..|++||.|.. .+|++++. .....|.+|... ++
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild--ea~D~V~Si~v~--------------~h 156 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD--EAKDGVSSIDVA--------------EH 156 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh--hhcCceeEEEec--------------cc
Confidence 99888 69999999999999999999999999999999974 35666666 456778888763 46
Q ss_pred EEEEeeCCCeEEccCCCCCCC
Q 006743 193 ALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 193 lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
.+++|+.||+++.||+|.-.-
T Consensus 157 eIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred EEEeeccCCcEEEEEeeccee
Confidence 788899999999999996443
No 109
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.68 E-value=2.6e-16 Score=173.79 Aligned_cols=193 Identities=19% Similarity=0.236 Sum_probs=157.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd--g~~lLaSGs~DGtI~IWDl~t~~~~v~~l~ 78 (633)
+.+|+|++||+|..-|.|+||++..-+..+.+.. |...|.|+.|+.. +..+|++++.|..|+|||+...-.++.++.
T Consensus 466 ~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA-HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld 544 (1080)
T KOG1408|consen 466 AVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA-HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD 544 (1080)
T ss_pred EECCCcceecccCccCceEEEEehhhhhhhheec-ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc
Confidence 3689999999999999999999998888888876 6677888999843 345899999999999999854332333333
Q ss_pred cCCC-------------------------------------------------CeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 006743 79 QHSA-------------------------------------------------PTAGISFSSDDKIIASVGLDKKLYTYD 109 (633)
Q Consensus 79 ~H~~-------------------------------------------------~VtsLafSPdg~~LaSgS~DGtVrIWD 109 (633)
+|.. .+++++..|..+++++++.|+.|+|||
T Consensus 545 ~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 545 GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence 3333 456677777788899999999999999
Q ss_pred CCCCceeeEee----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 110 PGSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 110 lrtgk~v~~i~----h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
+.+++.++.+. |++....+..+|.|.||++.+.|.++.+||.-+++. + -..++|.+.|+.+.|.+|
T Consensus 625 i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc-v--A~m~GHsE~VTG~kF~nD------- 694 (1080)
T KOG1408|consen 625 IESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC-V--AQMTGHSEAVTGVKFLND------- 694 (1080)
T ss_pred ccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh-h--hhhcCcchheeeeeeccc-------
Confidence 99999998883 678888899999999999999999999999999853 3 334589999999999985
Q ss_pred ccCCCCeEEEEeeCCCeEEccCCC
Q 006743 186 TTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 186 s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
...|++.+.|+.|.||.+-
T Consensus 695 -----CkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 695 -----CKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred -----chhheeecCCceEEEEECc
Confidence 4455666789999999874
No 110
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.68 E-value=2.2e-15 Score=151.68 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=125.7
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe-----CCCeEEEEECCCC------Cc
Q 006743 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-----DDGTLHLWDTTGR------SP 72 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs-----~DGtI~IWDl~t~------~~ 72 (633)
.+.++|++|+.|.++++||+++|+.+..++ ...+|..+.|+.+|. +++.+. ..+.|.++|++.. +.
T Consensus 62 ~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 62 WDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred CCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 456789999999999999999999999987 567889999999998 444433 3467999999722 22
Q ss_pred eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743 73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (633)
Q Consensus 73 ~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWD 150 (633)
+...+..+...++...|.|-++.|++|..||.|.+||+++++....- .|...|+.|++++|..++++++.|.+-++||
T Consensus 139 p~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred ceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeee
Confidence 35667778899999999999999999999999999999998655443 4888999999999999999999999999999
Q ss_pred CCCC
Q 006743 151 IRGK 154 (633)
Q Consensus 151 lrs~ 154 (633)
.++.
T Consensus 219 ~~tl 222 (327)
T KOG0643|consen 219 VRTL 222 (327)
T ss_pred ccce
Confidence 9864
No 111
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.4e-15 Score=161.52 Aligned_cols=194 Identities=14% Similarity=0.165 Sum_probs=151.3
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEE
Q 006743 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG 86 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vts 86 (633)
+.||+|+.|.+|++||+.++++...+. +|+..|.++.|+|....+|++|+.|++|.++|++.....-..++ ..+.|..
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEk 334 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEK 334 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEE
Confidence 578999999999999999999999887 68889999999999988999999999999999985433222232 4578999
Q ss_pred EEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 006743 87 ISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVLR 162 (633)
Q Consensus 87 LafSP-dg~~LaSgS~DGtVrIWDlrtg-k~v~~i-~h~~~ItsLafSPd-G~~LatGs~DGsV~IWDlrs~~k~v~~l~ 162 (633)
++|.| ....++++..||+|+.+|+|.. +++..+ .|.+.|.+++++.. -.++++++.|+.|++|++..... ..+..
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~ 413 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKE 413 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-ccccc
Confidence 99999 7788999999999999999975 777766 69999999999985 46788999999999999986422 11111
Q ss_pred ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743 163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (633)
Q Consensus 163 ~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ 214 (633)
..-.-+...|.++.|+ ....++.|+..+.++|||+....+.
T Consensus 414 ~~~~~~rl~c~~~~~~-----------~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPD-----------VAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccceeecccCCC-----------cceEEEecCccceEEEeecccChhH
Confidence 0011234666777775 2334455555678999999765553
No 112
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=4.8e-16 Score=169.80 Aligned_cols=181 Identities=17% Similarity=0.273 Sum_probs=143.1
Q ss_pred ccCCCCEEEE--EECCCcEEEEECCCCcee-----EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---
Q 006743 2 YNCKDEHLAS--ISLSGDLILHNLASGAKA-----AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--- 71 (633)
Q Consensus 2 FSpdG~~LaS--gs~DG~I~IWDl~tgk~v-----~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--- 71 (633)
|+++.+++|+ ++..|.|.||+++....+ -.+. ++..|.++.|.|.+.+.|+.+++||.|+||.+..+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 5666777765 466799999999754322 2222 457889999999888899999999999999985433
Q ss_pred ---ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeE
Q 006743 72 ---PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRV 146 (633)
Q Consensus 72 ---~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV 146 (633)
.....+..|...|+.+.|+| ..+.|++++.|-+|++||+++++....+ +|.+.|..++|+|||+.+++.+.||+|
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 22466889999999999999 8889999999999999999998766554 899999999999999999999999999
Q ss_pred EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 147 ~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
++|..+..++++..-... ....-..|.|.-+|+++++.
T Consensus 745 rVy~Prs~e~pv~Eg~gp-vgtRgARi~wacdgr~viv~ 782 (1012)
T KOG1445|consen 745 RVYEPRSREQPVYEGKGP-VGTRGARILWACDGRIVIVV 782 (1012)
T ss_pred EEeCCCCCCCccccCCCC-ccCcceeEEEEecCcEEEEe
Confidence 999999987766544322 12334456677677766644
No 113
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.68 E-value=5.8e-17 Score=170.59 Aligned_cols=205 Identities=14% Similarity=0.181 Sum_probs=163.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
|-++...|++|+.|..|++|++...+ .+..+.+ ....|..++|.+++. .+++++.|+.+++|++..... .+++.+
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~~-~~iAas~d~~~r~Wnvd~~r~-~~TLsG 259 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDNK-HVIAASNDKNLRLWNVDSLRL-RHTLSG 259 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCCc-eEEeecCCCceeeeeccchhh-hhhhcc
Confidence 44566789999999999999987666 4455554 456688899999998 677889999999999988774 678999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~ 159 (633)
|.+.|+++.|......+++|+.|.+|+.||+....+.+.+-....+..|+.+ ...+++|+.|++|++||++.... ..
T Consensus 260 HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~-~~ 336 (459)
T KOG0288|consen 260 HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK-TR 336 (459)
T ss_pred cccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCce-ee
Confidence 9999999999886666999999999999999998888877666777777776 56788999999999999998742 23
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEec----------------------------------cCCCCeEEEEeeCCCeEEc
Q 006743 160 VLRACSSSEAVSSLCWQRAKPVFIDET----------------------------------TCKAETALLGGAVGDSILM 205 (633)
Q Consensus 160 ~l~~~~H~~~VtsLafsPdg~~Las~s----------------------------------~~sd~~lLlSgs~Dg~IkI 205 (633)
... -.+.|+++..++++..|.+++ .++++.|+++|+.|+.|+|
T Consensus 337 sv~---~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i 413 (459)
T KOG0288|consen 337 SVP---LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI 413 (459)
T ss_pred Eee---cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE
Confidence 332 345888888888777666442 3557778888888999999
Q ss_pred cCCCCCCCCC
Q 006743 206 PDPLPSVTTS 215 (633)
Q Consensus 206 WDlr~~~~~s 215 (633)
|++..-....
T Consensus 414 W~v~tgKlE~ 423 (459)
T KOG0288|consen 414 WSVFTGKLEK 423 (459)
T ss_pred EEccCceEEE
Confidence 9886555433
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.68 E-value=6.6e-16 Score=164.51 Aligned_cols=200 Identities=16% Similarity=0.264 Sum_probs=166.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEE----------------e-CCCCCcEEEEEEccCCCeEEEEEeCCCeEE
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAEL----------------K-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLH 63 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~----------------~-~~~~~~VssLafSpdg~~lLaSGs~DGtI~ 63 (633)
+++++++++++++.+|+|.=|++.+++....+ . ..|...+.+++.++|++ +|++|+.|..|.
T Consensus 149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-ylatgg~d~~v~ 227 (479)
T KOG0299|consen 149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-YLATGGRDRHVQ 227 (479)
T ss_pred EeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-EEEecCCCceEE
Confidence 46899999999999999999999888743111 0 02445567799999998 999999999999
Q ss_pred EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEc
Q 006743 64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS 142 (633)
Q Consensus 64 IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~ 142 (633)
|||.++.+. ++.+.+|.+.|.+++|-.....+++++.|+.|++|++.....+.++ +|.+.|..+....-++.+-+|+.
T Consensus 228 Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgr 306 (479)
T KOG0299|consen 228 IWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGR 306 (479)
T ss_pred EecCcccch-hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccc
Confidence 999999885 6778999999999999988889999999999999999887666544 89999999998888888889999
Q ss_pred CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccc
Q 006743 143 NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (633)
Q Consensus 143 DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~ 219 (633)
|+++++|++....+ .++. +|.+.+-|++|- ++..+++|+.+|.|.+|++....|.-....
T Consensus 307 DrT~rlwKi~eesq--lifr--g~~~sidcv~~I-------------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 307 DRTVRLWKIPEESQ--LIFR--GGEGSIDCVAFI-------------NDEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred cceeEEEeccccce--eeee--CCCCCeeeEEEe-------------cccceeeccCCceEEEeeecccCceeEeec
Confidence 99999999965432 2333 788899999986 456788899999999999987777554433
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.67 E-value=1.6e-14 Score=146.86 Aligned_cols=188 Identities=13% Similarity=0.105 Sum_probs=141.3
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt 85 (633)
++.+++++.|+.|++||+.+++.+..+..+ . .+..++|+|+++.+++++..++.|++||..+.+. ...+..+. .+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~ 76 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG-Q-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPE 76 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC-C-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-Ccc
Confidence 457889999999999999999988888753 2 2466899999985557778899999999988763 33444443 357
Q ss_pred EEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC-eEEEEECCCCCCceEEEee
Q 006743 86 GISFSSDDKIIASV-GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG-RVVFYDIRGKPQPLTVLRA 163 (633)
Q Consensus 86 sLafSPdg~~LaSg-S~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG-sV~IWDlrs~~k~v~~l~~ 163 (633)
.++|+|+++.++++ ..|+.|++||+++.+.+..+.....+.+++|+|+|.+++++..++ .+++||.++... .....
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~- 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL- 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-
Confidence 88999998877654 568999999999988777776566678999999999999988775 577889887632 22221
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 164 ~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
....+.+++|++++++++ +++..++.|++||+....
T Consensus 155 --~~~~~~~~~~s~dg~~l~-----------~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 155 --VDQRPRFAEFTADGKELW-----------VSSEIGGTVSVIDVATRK 190 (300)
T ss_pred --cCCCccEEEECCCCCEEE-----------EEcCCCCEEEEEEcCcce
Confidence 234467789988755443 334458899999997543
No 116
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.67 E-value=1.5e-15 Score=155.00 Aligned_cols=163 Identities=21% Similarity=0.307 Sum_probs=133.3
Q ss_pred EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 006743 30 AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY 108 (633)
Q Consensus 30 ~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~-~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIW 108 (633)
.++.....+.|.+|+|+|....+++++++|++|++|++... ...-+....|.++|.+++|+.||..+++|+.|+.+++|
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 34555667889999999976668889999999999999763 33334567899999999999999999999999999999
Q ss_pred eCCCCceeeEeeCCCCeEEEEEecCCC--EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 006743 109 DPGSRRPSSCITYEAPFSSLAFIDDDW--ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (633)
Q Consensus 109 Dlrtgk~v~~i~h~~~ItsLafSPdG~--~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s 186 (633)
|+.+++....-.|.++|.++.|-+... .|++|+.|.+|++||+|.. .++..+. -.+.++++..-
T Consensus 100 DL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~---LPeRvYa~Dv~---------- 165 (347)
T KOG0647|consen 100 DLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ---LPERVYAADVL---------- 165 (347)
T ss_pred EccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeee---ccceeeehhcc----------
Confidence 999998888878999999999998665 8999999999999999976 5555555 34566666542
Q ss_pred cCCCCeEEEEeeCCCeEEccCCCC
Q 006743 187 TCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 187 ~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
..+++.+..++.|.+|.+..
T Consensus 166 ----~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 166 ----YPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred ----CceeEEEecCCcEEEEEcCC
Confidence 33455556699999999854
No 117
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.3e-16 Score=184.43 Aligned_cols=196 Identities=20% Similarity=0.303 Sum_probs=155.4
Q ss_pred CccCCCCE----EEEEECCCcEEEEECCC---Cc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743 1 MYNCKDEH----LASISLSGDLILHNLAS---GA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (633)
Q Consensus 1 AFSpdG~~----LaSgs~DG~I~IWDl~t---gk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~ 70 (633)
+|.+.|.. ||.|..||.|.+||... +. .+..+.. |.+.|..+.|++...++|++|+.||.|.|||+.+.
T Consensus 71 ~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~ 149 (1049)
T KOG0307|consen 71 AWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP 149 (1049)
T ss_pred eecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccCCCCcEEEeccCCc
Confidence 46666665 78888999999999865 22 2333443 66778889999999889999999999999999875
Q ss_pred CceeEE-eccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---CCeEEEEEecCC-CEEEEEEcCC
Q 006743 71 SPKVSW-LKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDD-WILTAGTSNG 144 (633)
Q Consensus 71 ~~~v~~-l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~---~~ItsLafSPdG-~~LatGs~DG 144 (633)
+..... -..-...|.+++|+. ....|++++.+|.+.|||+|..+++..+... ..+..++|+|++ ..|++++.|.
T Consensus 150 ~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd 229 (1049)
T KOG0307|consen 150 ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD 229 (1049)
T ss_pred CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC
Confidence 533221 122457899999998 6678899999999999999998877666432 348899999976 4566666653
Q ss_pred ---eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 145 ---RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 145 ---sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
.|.+||+|....+++++. +|...|.++.|++. |..++++++.|+.|.+|+...
T Consensus 230 ~~PviqlWDlR~assP~k~~~--~H~~GilslsWc~~-----------D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 230 SAPVIQLWDLRFASSPLKILE--GHQRGILSLSWCPQ-----------DPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred CCceeEeecccccCCchhhhc--ccccceeeeccCCC-----------CchhhhcccCCCCeeEecCCC
Confidence 499999999888888886 89999999999985 667788888899999999875
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.6e-14 Score=142.50 Aligned_cols=191 Identities=16% Similarity=0.252 Sum_probs=146.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCce-----eEEEeCCCCCcEEEEEEcc----------------------------
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSR---------------------------- 47 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~-----v~~~~~~~~~~VssLafSp---------------------------- 47 (633)
+|+|+|++|++|++|..|++.-.+...+ -.++.- |...|+.++|..
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm-hdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM-HDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EecCccCeEEecCCCceEEEEecccccccccCcceeeee-cCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 6999999999999999998875532111 011211 333344444422
Q ss_pred ------------------CCCeEEEEEeCCCeEEEEECCCCCceeEEec--cC-----CCCeEEEEEcCCCCEEEEEeCC
Q 006743 48 ------------------NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--QH-----SAPTAGISFSSDDKIIASVGLD 102 (633)
Q Consensus 48 ------------------dg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~--~H-----~~~VtsLafSPdg~~LaSgS~D 102 (633)
++- .|++|+.|.+|++||++-..+ +..+. -| ...|.+++..|.|++|++|-.|
T Consensus 175 ~~~a~sghtghilalyswn~~-m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d 252 (350)
T KOG0641|consen 175 GFHALSGHTGHILALYSWNGA-MFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD 252 (350)
T ss_pred cceeecCCcccEEEEEEecCc-EEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcceeeeccCC
Confidence 222 688899999999999986664 33332 12 2579999999999999999999
Q ss_pred CeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC---CCceEEEeecCCCCCeeEEEEccC
Q 006743 103 KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK---PQPLTVLRACSSSEAVSSLCWQRA 178 (633)
Q Consensus 103 GtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~---~k~v~~l~~~~H~~~VtsLafsPd 178 (633)
..+.+||++.+++++.+ .|...|.|+.|+|...|+++++.|..|++-|+... +.++.++. .|...+..+.|+|
T Consensus 253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~rwh~- 329 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCRWHP- 329 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEEecC-
Confidence 99999999999999877 79999999999999999999999999999999853 22333333 6888899999998
Q ss_pred CCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 179 KPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 179 g~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
.+.-+++.+.|+++.+|-+
T Consensus 330 -----------~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 330 -----------QDFSFISSSADKTATLWAL 348 (350)
T ss_pred -----------ccceeeeccCcceEEEecc
Confidence 4566777888999999965
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.65 E-value=3.7e-14 Score=144.20 Aligned_cols=195 Identities=13% Similarity=0.125 Sum_probs=139.6
Q ss_pred CccCCCCEE-EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 1 MYNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 1 AFSpdG~~L-aSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
+|+|+|+.+ ++++.++.|++||..+++.+..+..+. . +..++|+|+++.+++++..|+.|++||+.+... +..+.
T Consensus 37 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~- 112 (300)
T TIGR03866 37 TLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-D-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIP- 112 (300)
T ss_pred EECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-C-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-
Confidence 478999977 566788999999999888877766432 2 356899999985556667789999999987653 33333
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCCc
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQP 157 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DG-tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs~~k~ 157 (633)
+...+.+++|+|++.+++++..++ .+++||.++++....+.....+.+++|+|++++|++++ .++.|++||+++.+ .
T Consensus 113 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~ 191 (300)
T TIGR03866 113 VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-V 191 (300)
T ss_pred CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-e
Confidence 334578899999999999988775 57788999887766555555678899999999886554 68999999999863 3
Q ss_pred eEEEeecC---C--CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743 158 LTVLRACS---S--SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (633)
Q Consensus 158 v~~l~~~~---H--~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~ 211 (633)
+..+.... + ......++|+|++++++ ++...++.+.+||+...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~-----------~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 192 IKKITFEIPGVHPEAVQPVGIKLTKDGKTAF-----------VALGPANRVAVVDAKTY 239 (300)
T ss_pred eeeeeecccccccccCCccceEECCCCCEEE-----------EEcCCCCeEEEEECCCC
Confidence 33332111 1 11234678888766533 22344667899988643
No 120
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.8e-15 Score=152.92 Aligned_cols=193 Identities=13% Similarity=0.146 Sum_probs=150.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc-----ee-EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGA-----KA-AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--- 71 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk-----~v-~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--- 71 (633)
+|+.||++|++++.|+.|+||++.+-. .+ ..+.. +--+.+.|.||-+.+++++....++++|.+...+
T Consensus 93 ~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~---dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~ 169 (420)
T KOG2096|consen 93 AFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY---DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGS 169 (420)
T ss_pred EEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC---CCceEEEECCCcceEEEEEccCCEEEEEEeeecccCC
Confidence 589999999999999999999997632 11 11221 2335589999998888888888899999874322
Q ss_pred ce--------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEc
Q 006743 72 PK--------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS 142 (633)
Q Consensus 72 ~~--------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~ 142 (633)
.. .+.-+.|...|..+-....+.+|++++.|..|.+||++ |+.+..+. ....-+..+.+|+|++|++++.
T Consensus 170 ~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 170 GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred CCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecC
Confidence 11 12334577778888888889999999999999999999 78777773 4556677889999999999999
Q ss_pred CCeEEEEECCCC-----CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 143 NGRVVFYDIRGK-----PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 143 DGsV~IWDlrs~-----~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
.--|++|.+--. +...+.+...+|...|..++|++ +...+++.+.||+++|||..
T Consensus 249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn------------~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN------------SSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC------------CcceeEEEecCCcEEEeecc
Confidence 999999987422 23345556669999999999998 45667777899999999865
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=6.2e-15 Score=167.28 Aligned_cols=191 Identities=20% Similarity=0.251 Sum_probs=155.9
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~ 82 (633)
..++.+|++|+.+++|.+|....++.-..+.. ..-.+++++|+.+|. +++.|++|-.|++-+...... ...+++|.+
T Consensus 63 a~~s~~f~~~s~~~tv~~y~fps~~~~~iL~R-ftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~-~~~lrgh~a 139 (933)
T KOG1274|consen 63 ACYSNHFLTGSEQNTVLRYKFPSGEEDTILAR-FTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDA 139 (933)
T ss_pred eecccceEEeeccceEEEeeCCCCCccceeee-eeccceEEEEecCCc-EEEeecCceeEEEEeccccch-heeecccCC
Confidence 45677999999999999999987764322221 235688999999998 899999999999999977663 678899999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---------h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
+|.++.|+|++++||+.+.||.|++||+.++.+...+. ....+..++|+|+|..+++...|+.|++|+..+
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 99999999999999999999999999999988766552 134467899999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 154 ~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
.... ..+....+...+.++.|+|+|+||+++ ..|+.|.|||+.
T Consensus 220 we~~-f~Lr~~~~ss~~~~~~wsPnG~YiAAs------------~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 220 WELQ-FKLRDKLSSSKFSDLQWSPNGKYIAAS------------TLDGQILVWNVD 262 (933)
T ss_pred ceeh-eeecccccccceEEEEEcCCCcEEeee------------ccCCcEEEEecc
Confidence 7543 334433455559999999977777665 668888899887
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=4.7e-15 Score=151.95 Aligned_cols=194 Identities=18% Similarity=0.271 Sum_probs=161.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|-..|+.+++++.|.+..+||+++++.+..+.+ |...++.++-+|..+ ++++.+.|-+.++||.+..-..+..+.+|.
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG-Hd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTG-HDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccC-cchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccc
Confidence 334688999999999999999999999999988 555566667788876 899999999999999997766788899999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg-k~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~ 160 (633)
..|+++.|+.+ ..+++|++|.+|++||+++. .++..+....+++.++.+..+.+|+.-..+..|++||++.... .+.
T Consensus 358 dtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl-aRl 435 (481)
T KOG0300|consen 358 DTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL-ARL 435 (481)
T ss_pred cceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcc-ccC
Confidence 99999999964 56899999999999999985 4677888899999999999889999999999999999987521 111
Q ss_pred E--eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 161 L--RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 161 l--~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
- ...+|..-|+|++|..+.. -..|++++-|+.+.=|.+.
T Consensus 436 PrtsRqgHrRMV~c~AW~eehp----------~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 436 PRTSRQGHRRMVTCCAWLEEHP----------ACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred CcccccccceeeeeeeccccCc----------ccccccccccceeeeeEec
Confidence 1 2238999999999986422 2347788889999999774
No 123
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.8e-14 Score=146.09 Aligned_cols=199 Identities=12% Similarity=0.211 Sum_probs=149.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCC---
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRS--- 71 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk----~v~~~~~~~~~~VssLafSp--dg~~lLaSGs~DGtI~IWDl~t~~--- 71 (633)
.|++.|+++|+|+.|++|+|||..+.. +....+.|... |..|.|.+ .|+ ++++++.|+++.||.-....
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~S-i~rV~WAhPEfGq-vvA~cS~Drtv~iWEE~~~~~~~ 97 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGS-IWRVVWAHPEFGQ-VVATCSYDRTVSIWEEQEKSEEA 97 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCc-EEEEEecCccccc-eEEEEecCCceeeeeeccccccc
Confidence 478899999999999999999975433 44455654444 55578864 355 99999999999999862111
Q ss_pred -----ceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCC------ceeeEee--------CCCCeEEEEE
Q 006743 72 -----PKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSR------RPSSCIT--------YEAPFSSLAF 130 (633)
Q Consensus 72 -----~~v~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlrtg------k~v~~i~--------h~~~ItsLaf 130 (633)
.....+......|++++|.| -|-.+++++.||.||||+.-.. .....+. +..+..|+.|
T Consensus 98 ~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 98 HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 11445667788999999999 6889999999999999986432 2222222 6677899999
Q ss_pred ecC---CCEEEEEEcC-----CeEEEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006743 131 IDD---DWILTAGTSN-----GRVVFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD 201 (633)
Q Consensus 131 SPd---G~~LatGs~D-----GsV~IWDlrs~~-k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg 201 (633)
+|. ..+||+|+.+ +.++||...... +..++-...+|..+|+.|+|.|+ ......+++.++.||
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn--------~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN--------IGRSYHLLAVATKDG 249 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc--------cCCceeeEEEeecCc
Confidence 984 5678888776 579999876644 44455555689999999999996 344566778888898
Q ss_pred eEEccCCCC
Q 006743 202 SILMPDPLP 210 (633)
Q Consensus 202 ~IkIWDlr~ 210 (633)
|+||.++.
T Consensus 250 -v~I~~v~~ 257 (361)
T KOG2445|consen 250 -VRIFKVKV 257 (361)
T ss_pred -EEEEEEee
Confidence 99998864
No 124
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.62 E-value=7.9e-15 Score=153.96 Aligned_cols=169 Identities=13% Similarity=0.176 Sum_probs=136.2
Q ss_pred CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC------ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEE
Q 006743 34 DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLY 106 (633)
Q Consensus 34 ~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~------~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVr 106 (633)
+.|...|..++|+|.+++.|++|++|.+|.||++..+. ..+..+.+|...|.-++|+| ..+.|++++.|.+|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence 34777888899999999999999999999999995432 33678899999999999999 788999999999999
Q ss_pred EEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC-eeEEEEccCCCeEEEe
Q 006743 107 TYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA-VSSLCWQRAKPVFIDE 185 (633)
Q Consensus 107 IWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~-VtsLafsPdg~~Las~ 185 (633)
+||+.+++.+..+.|.+-|+++.|+.||.+|++.+.|..|+|||.++++ ++..- .+|.+. -..+.|-.+|.++.++
T Consensus 158 iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~--~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 158 IWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEG--VAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc-Eeeec--ccccCCCcceeEEeccCceeeec
Confidence 9999999998888999999999999999999999999999999999984 33333 356543 3344555555533332
Q ss_pred ccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743 186 TTCKAETALLGGAVGDSILMPDPLPSVTT 214 (633)
Q Consensus 186 s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ 214 (633)
++--.++.+-+||......+
T Consensus 235 ---------fsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 235 ---------FSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred ---------cccccccceeccCcccccCc
Confidence 12234889999998765543
No 125
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=6e-15 Score=147.05 Aligned_cols=190 Identities=14% Similarity=0.169 Sum_probs=144.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCcee--EEEeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCC--CceeEEecc
Q 006743 5 KDEHLASISLSGDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGR--SPKVSWLKQ 79 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v--~~~~~~~~~~VssLafSpdg~-~lLaSGs~DGtI~IWDl~t~--~~~v~~l~~ 79 (633)
.|..||+++.||+|.||.-+.++-. .+... |...|++|+|.|.+- .+|++++.||.|.|.+.+.. -...+....
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~-h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAA-HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhh-hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 5889999999999999998777432 23333 677889999998752 37888999999999998654 122345678
Q ss_pred CCCCeEEEEEcCC---C-----------CEEEEEeCCCeEEEEeCCCCcee--eEe-eCCCCeEEEEEecC----CCEEE
Q 006743 80 HSAPTAGISFSSD---D-----------KIIASVGLDKKLYTYDPGSRRPS--SCI-TYEAPFSSLAFIDD----DWILT 138 (633)
Q Consensus 80 H~~~VtsLafSPd---g-----------~~LaSgS~DGtVrIWDlrtgk~v--~~i-~h~~~ItsLafSPd----G~~La 138 (633)
|.-.|++++|.|. | +.|++|+.|+.|+||+...++-+ ..+ +|.+.|+.++|.|. -.+|+
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 9999999999984 4 67999999999999999886432 223 69999999999995 36899
Q ss_pred EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccC
Q 006743 139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (633)
Q Consensus 139 tGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWD 207 (633)
+++.||+|.||..+....+.+.--.......+..+.|+..|.+|+.. +.|+.|.+|.
T Consensus 228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs------------~GdNkvtlwk 284 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVS------------GGDNKVTLWK 284 (299)
T ss_pred EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEe------------cCCcEEEEEE
Confidence 99999999999887532222221112356789999999977666554 4477777773
No 126
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.1e-14 Score=145.39 Aligned_cols=175 Identities=18% Similarity=0.231 Sum_probs=136.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEEec--
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSWLK-- 78 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-~~v~~l~-- 78 (633)
.+|-++.+++++.|++|++||++..++...+... .. .+++|.|.|- ++|++.....|+|||++.-. .+-..+.
T Consensus 108 ~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~--pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 108 VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GR--PIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred ecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CC--cceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 4678899999999999999999877766655432 22 3468999997 78888877799999997542 1222222
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCC---CeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 79 -QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEA---PFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 79 -~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~---~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
.-....+.|.|+|||++|+.+...+.+++.|.-+|.....+. +.. -....+|.||+++|++|..||+|++|++++
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 345788999999999999999999999999999998777663 221 235788999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCeeEEEEccCCCeE
Q 006743 154 KPQPLTVLRACSSSEAVSSLCWQRAKPVF 182 (633)
Q Consensus 154 ~~k~v~~l~~~~H~~~VtsLafsPdg~~L 182 (633)
+. .+..+... +.+++.++.|+|.-..+
T Consensus 264 g~-~v~~~~~~-~~~~~~~~~fnP~~~mf 290 (311)
T KOG1446|consen 264 GK-KVAVLRGP-NGGPVSCVRFNPRYAMF 290 (311)
T ss_pred Cc-EeeEecCC-CCCCccccccCCceeee
Confidence 84 44445532 78999999999953333
No 127
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.3e-14 Score=148.91 Aligned_cols=204 Identities=17% Similarity=0.200 Sum_probs=147.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec--
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-- 78 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-- 78 (633)
.|++.|.+||+|+.||.|.|||+.+....+.+.+ |-.+|++++|+++|+ +|++++.|..|.+||+..+.+..+...
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~rirf~s 107 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRIRFDS 107 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEEEccC
Confidence 3899999999999999999999988876666654 778899999999998 899999999999999977664311100
Q ss_pred ------cC---------------------C----------------CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 006743 79 ------QH---------------------S----------------APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (633)
Q Consensus 79 ------~H---------------------~----------------~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~ 115 (633)
-| . ....+..|.+.|++|++|...|.+.+||..+-++
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~ 187 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC 187 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee
Confidence 00 0 0011223666789999999999999999999988
Q ss_pred eeEee--CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC--------CceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 116 SSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP--------QPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 116 v~~i~--h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~--------k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
+..+. ....|..+.++..|+.|+.-+.|+.|+.|+++.-. .+...+........-.+++|+.+|.|++++
T Consensus 188 vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~ 267 (405)
T KOG1273|consen 188 VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG 267 (405)
T ss_pred eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence 87764 33689999999999999999999999999987321 111111212233445678888888888776
Q ss_pred ccCCCCeEEEEeeCCCeEEcc
Q 006743 186 TTCKAETALLGGAVGDSILMP 206 (633)
Q Consensus 186 s~~sd~~lLlSgs~Dg~IkIW 206 (633)
+......|++-.+....|||-
T Consensus 268 s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 268 SARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred cccceeEEEEecCCcceeeee
Confidence 544444444444444444443
No 128
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.61 E-value=2.5e-14 Score=150.21 Aligned_cols=198 Identities=19% Similarity=0.262 Sum_probs=155.6
Q ss_pred CccCC-CCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743 1 MYNCK-DEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (633)
Q Consensus 1 AFSpd-G~~LaSgs~DG~I~IWDl~tgk-------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~ 72 (633)
+|+|- ++.||+|+.|.+|.||++..+. .+..+.+ |...|-.|+|+|...++|++++.|.+|.||++.+++.
T Consensus 88 ~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea 166 (472)
T KOG0303|consen 88 DWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA 166 (472)
T ss_pred ccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCceEEEEeccCCce
Confidence 36664 5688999999999999987643 4566766 6667888999999999999999999999999999986
Q ss_pred eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCC-CeEEEEEecCCCEEEEEE---cCCeEE
Q 006743 73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEA-PFSSLAFIDDDWILTAGT---SNGRVV 147 (633)
Q Consensus 73 ~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~-~ItsLafSPdG~~LatGs---~DGsV~ 147 (633)
.+ .+. |...|+++.|+.||.+|++.+.|+.|+|||.++++.+..- .|.+ .-..+.|-.+|.++.+|. .+..+-
T Consensus 167 li-~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~a 244 (472)
T KOG0303|consen 167 LI-TLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIA 244 (472)
T ss_pred ee-ecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecccccccccee
Confidence 44 344 9999999999999999999999999999999999998776 5544 355667778888555554 367899
Q ss_pred EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 148 IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
+||..+...++.... ......|.---|++ +...++++|-.|+.|+.|++....|
T Consensus 245 Lwdp~nl~eP~~~~e-lDtSnGvl~PFyD~-----------dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 245 LWDPNNLEEPIALQE-LDTSNGVLLPFYDP-----------DTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccCcccccCcceeEE-eccCCceEEeeecC-----------CCCEEEEEecCCcceEEEEecCCCc
Confidence 999998877754433 23344444444444 3666778888899999999976655
No 129
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.61 E-value=7.7e-15 Score=162.46 Aligned_cols=179 Identities=14% Similarity=0.208 Sum_probs=148.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V 84 (633)
++..|++|+.|..|.+|.+....+...+++ |...|+++....++. +++|++|.+++||...... ..+.+|...|
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg-H~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l~---~~l~gH~asV 143 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKG-HKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGELV---YSLQGHTASV 143 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhc-cccceeeeecCCcCc--eEecccccceEEecchhhh---cccCCcchhe
Confidence 445688999999999999999999999987 566677787766664 8999999999999886543 4589999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006743 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163 (633)
Q Consensus 85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~ 163 (633)
++++.-|+. .+++|+.|++||+|.- ++.++++ +|.+.|+.+++-+++ .+++++.||.|++|++... ..+..
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge----~l~~~ 215 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE----VLLEM 215 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCc----eeeee
Confidence 999999877 8999999999999986 5666666 699999999999875 4678999999999999554 44555
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 164 ~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
++|..-|+++....+ ...+++++.|++++||+..
T Consensus 216 ~ghtn~vYsis~~~~------------~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 216 HGHTNFVYSISMALS------------DGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eccceEEEEEEecCC------------CCeEEEecCCceEEEeecC
Confidence 699999999996553 4455666778999999775
No 130
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.60 E-value=1.8e-14 Score=162.12 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=152.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEe--CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELK--DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~--~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
.++.|++.+.|...|.|-+||+++|-....|- ..|+..|+.++...-++ .+++++.+|-+++||..+... ...+.
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~l-~~~l~- 532 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKVL-KKSLR- 532 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcce-eeeec-
Confidence 46789999999999999999999998888882 34778889899887776 899999999999999988763 33333
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
-...+.++..+.....++.+..|-.|+++|+.+.+.++.+ +|.+.|++++|+|||++|++++.|++|++||+.++
T Consensus 533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~---- 608 (910)
T KOG1539|consen 533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG---- 608 (910)
T ss_pred cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc----
Confidence 3456888888888889999999999999999999999888 69999999999999999999999999999999998
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEec
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDET 186 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s 186 (633)
..+....-..+++++.|+|+|.+|++..
T Consensus 609 ~lID~~~vd~~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 609 TLIDGLLVDSPCTSLSFSPNGDFLATVH 636 (910)
T ss_pred ceeeeEecCCcceeeEECCCCCEEEEEE
Confidence 3344444678999999999888887763
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.59 E-value=3.2e-14 Score=156.38 Aligned_cols=234 Identities=18% Similarity=0.204 Sum_probs=155.0
Q ss_pred CCEEEEEECCCcEEEEECCCCcee---E--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEecc
Q 006743 6 DEHLASISLSGDLILHNLASGAKA---A--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQ 79 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v---~--~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~l~~ 79 (633)
...|+.+..||.|.++|.....-. + .....|...|.++.|.| ++..|++++.|.++++||+.+.... ...+.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecc
Confidence 357889999999999998643221 1 12224778888999999 5569999999999999999877743 234789
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc--------------------eeeE--------eeCCCCeEE---
Q 006743 80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR--------------------PSSC--------ITYEAPFSS--- 127 (633)
Q Consensus 80 H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk--------------------~v~~--------i~h~~~Its--- 127 (633)
|.+.|.++||.| +...|++|+.||.|.|||++-.. +... ..+...|.+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 999999999999 88899999999999999986322 0000 012333444
Q ss_pred EEEecCCCEEEEEEc-CCeEEEEECCCCCCc-----eEEEeecCC---CCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006743 128 LAFIDDDWILTAGTS-NGRVVFYDIRGKPQP-----LTVLRACSS---SEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (633)
Q Consensus 128 LafSPdG~~LatGs~-DGsV~IWDlrs~~k~-----v~~l~~~~H---~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs 198 (633)
+.+..|...||+++. |+.|+|||++..... ........| .-.+.++..+. .+.+|+..+
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs------------sGt~L~AsC 290 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS------------SGTYLFASC 290 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC------------CCCeEEEEe
Confidence 555668888888777 999999999975432 222222223 22344555443 334444455
Q ss_pred CCCeEEccCCCCCCC----------CCcccccccccCCCCCCccCCCCCCCccccCCCCCCCCc
Q 006743 199 VGDSILMPDPLPSVT----------TSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQ 252 (633)
Q Consensus 199 ~Dg~IkIWDlr~~~~----------~ss~s~s~a~sss~sslt~~ssG~~ssi~~~st~e~tP~ 252 (633)
.|+.|++|+++.... ..+.......+.....+...+....+-++.....+..|.
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 699999999975432 112222222333444455555555556677777777665
No 132
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=1.6e-14 Score=156.21 Aligned_cols=171 Identities=18% Similarity=0.200 Sum_probs=133.0
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEe---CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---------
Q 006743 4 CKDEHLASISLSGDLILHNLASGAKAAELK---DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--------- 71 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~---~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--------- 71 (633)
+++--|+.|-.-|.|.+.|....+..+.+. .-....|+|++|-|.++.+|+.+-.+|.+++||.....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 345567778888899988875532211111 12357789999999988899999999999999863211
Q ss_pred ------------------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEec
Q 006743 72 ------------------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID 132 (633)
Q Consensus 72 ------------------~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSP 132 (633)
.++..+.-..+.|+.++|+|||++||+++.||.+||||..+.+.+..+ .+-+...|++|+|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 001122223457899999999999999999999999999988877666 4778999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743 133 DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (633)
Q Consensus 133 dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP 177 (633)
||+||++|++|..|.||.+...+ .+-+..+|..+|..|+|+|
T Consensus 343 DGKyIvtGGEDDLVtVwSf~erR---VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEERR---VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CccEEEecCCcceEEEEEeccce---EEEeccccccceeeEeecc
Confidence 99999999999999999998763 3345569999999999996
No 133
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.59 E-value=1.6e-14 Score=154.78 Aligned_cols=189 Identities=15% Similarity=0.220 Sum_probs=149.1
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC-CCCe
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-SAPT 84 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H-~~~V 84 (633)
..|+++|+..+.|+|||++...+.+.+++ |...|++|.|+-.+. +|++++..|.|.|..+.++.. ...+... ...|
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkd-h~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsv 167 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKD-HQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSV 167 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccC-CcceeEEEEecCCcc-eeEEeccCCcEEEEecccCcc-ccceecCCCCeE
Confidence 35889999999999999985545555665 668899999998877 899999999999999988763 2333322 4556
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743 85 AGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTV 160 (633)
Q Consensus 85 tsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPd-G~~LatGs~DGsV~IWDlrs~~k~v~~ 160 (633)
.-+.|+| ...+|.+++++|.|.+||+....++..+ .|..++..+||+|. ..+|++.+.|.+|++||.+... ....
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~ 246 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDR 246 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-ccce
Confidence 7899999 5556788999999999999988777665 59999999999995 5677889999999999999763 2233
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
+ ....+...++|.++|-+ |+.|...|.|..||+|....
T Consensus 247 l---~y~~Plstvaf~~~G~~------------L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 247 L---TYSHPLSTVAFSECGTY------------LCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred e---eecCCcceeeecCCceE------------EEeecCCceEEEEecccCCC
Confidence 3 35678999999985544 44556689999999996543
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=4e-14 Score=160.84 Aligned_cols=173 Identities=16% Similarity=0.251 Sum_probs=144.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ- 79 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~- 79 (633)
+|+-+|+++|.|+.|-.|++-++.+......+++ |...|.+|.|+|++. +||+.+.||.|+|||+.++... .++.+
T Consensus 103 ~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~-~tl~~v 179 (933)
T KOG1274|consen 103 AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILS-KTLTGV 179 (933)
T ss_pred EEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCC-EEEEEecCceEEEEEcccchhh-hhcccC
Confidence 4788999999999999999999999998888887 677888999999998 9999999999999999877632 22211
Q ss_pred -------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 006743 80 -------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (633)
Q Consensus 80 -------H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~DGsV~IW 149 (633)
....+..++|+|++..|+..+.|+.|++|+..++.....+. +...+.+++|+|+|+|||+++.||.|.||
T Consensus 180 ~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vW 259 (933)
T KOG1274|consen 180 DKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVW 259 (933)
T ss_pred CccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEE
Confidence 14566788999998899999999999999999988776662 44459999999999999999999999999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEE
Q 006743 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFI 183 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~La 183 (633)
|.++... +.....|+|++|.|+++.+-
T Consensus 260 nv~t~~~-------~~~~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 260 NVDTHER-------HEFKRAVCCEAWKPNANAIT 286 (933)
T ss_pred ecccchh-------ccccceeEEEecCCCCCeeE
Confidence 9997421 23457899999999876553
No 135
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.58 E-value=3e-14 Score=146.91 Aligned_cols=190 Identities=18% Similarity=0.266 Sum_probs=145.1
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE--EeccCCCCe
Q 006743 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS--WLKQHSAPT 84 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~--~l~~H~~~V 84 (633)
-++|+|+.-|.|+|.|+.+++....+.+ |+..|+.|++.|+..+++++++.|..|++|++++..+... -+.+|.+.|
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~g-hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRG-HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceec-cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence 3788899999999999999999999986 7888999999999988999999999999999999886422 246899999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------------------------eeEe----eCC-------------
Q 006743 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRP-------------------------SSCI----TYE------------- 122 (633)
Q Consensus 85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~-------------------------v~~i----~h~------------- 122 (633)
.++.|++++.+|++++.|..|++|++...+. ...+ -|.
T Consensus 185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~i 264 (385)
T KOG1034|consen 185 LSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFI 264 (385)
T ss_pred EEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhhe
Confidence 9999999999999999999999999852110 0000 011
Q ss_pred ------CC-----------------------------------eEE--EEEecCCCEEEEEEcCCeEEEEECCCCCCc-e
Q 006743 123 ------AP-----------------------------------FSS--LAFIDDDWILTAGTSNGRVVFYDIRGKPQP-L 158 (633)
Q Consensus 123 ------~~-----------------------------------Its--LafSPdG~~LatGs~DGsV~IWDlrs~~k~-v 158 (633)
+. |.- .+|+|.+++||.|...|.|++||+++.+.+ .
T Consensus 265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ 344 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC 344 (385)
T ss_pred eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC
Confidence 11 111 234555788999999999999999987542 2
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
..+........|...+|+.++.+ |+....|+.|.-||..
T Consensus 345 ttl~~s~~~~tVRQ~sfS~dgs~------------lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 345 TTLTHSKSGSTVRQTSFSRDGSI------------LVLVCDDGTVWRWDRV 383 (385)
T ss_pred ceEEeccccceeeeeeecccCcE------------EEEEeCCCcEEEEEee
Confidence 23332344567888898885544 4444669999999853
No 136
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.58 E-value=3.8e-15 Score=148.85 Aligned_cols=197 Identities=17% Similarity=0.206 Sum_probs=164.2
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~ 82 (633)
.|+|-+|+++++||.-.+-+-++|..+.+|.+ |+..|...+.+.+.. ..++++.|-+-+|||..++.. ..-..|..
T Consensus 26 tp~g~flisa~kd~~pmlr~g~tgdwigtfeg-hkgavw~~~l~~na~-~aasaaadftakvw~a~tgde--lhsf~hkh 101 (334)
T KOG0278|consen 26 TPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-HKGAVWSATLNKNAT-RAASAAADFTAKVWDAVTGDE--LHSFEHKH 101 (334)
T ss_pred CCCceEEEEeccCCCchhccCCCCCcEEeeec-cCcceeeeecCchhh-hhhhhcccchhhhhhhhhhhh--hhhhhhhh
Confidence 57899999999999999999999999999998 555666667777765 688999999999999988774 23457889
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743 83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (633)
Q Consensus 83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~-v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~ 160 (633)
.|..++|+.|.++|++|+.++.++|||++..+. ...+ +|.+.|..+.|....+.|++...|++|++||.+++. .+..
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-~v~s 180 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-EVQS 180 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-EEEE
Confidence 999999999999999999999999999986542 2333 799999999999999999999999999999999983 3444
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCccccc
Q 006743 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLS 220 (633)
Q Consensus 161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~s 220 (633)
+. -..+|+++.++++|++|... ..+.|++||...+....++..+
T Consensus 181 L~---~~s~VtSlEvs~dG~ilTia-------------~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 181 LE---FNSPVTSLEVSQDGRILTIA-------------YGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred Ee---cCCCCcceeeccCCCEEEEe-------------cCceeEEeccccccceeeccCc
Confidence 44 56789999999988776554 4678999999988877666554
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.58 E-value=2.7e-14 Score=145.42 Aligned_cols=166 Identities=17% Similarity=0.257 Sum_probs=138.4
Q ss_pred EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--------------eEEeccCCCCeEEEEEcC-CCCEE
Q 006743 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--------------VSWLKQHSAPTAGISFSS-DDKII 96 (633)
Q Consensus 32 ~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~--------------v~~l~~H~~~VtsLafSP-dg~~L 96 (633)
+...|++.|+.+...+....++++|+.||.|.|||++..... ...-.+|.-.|..+.|-| |...|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 444578889999998876669999999999999999654311 112346788999999999 88899
Q ss_pred EEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecC---CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEE
Q 006743 97 ASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD---DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSL 173 (633)
Q Consensus 97 aSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPd---G~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsL 173 (633)
.+++.|.++++||..+-+....+..++.|++-+|+|- -..||+|..|-.|++.|+..+. .-..+. +|.+.|.++
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~Ls--GHr~~vlaV 194 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLS--GHRDGVLAV 194 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeec--cccCceEEE
Confidence 9999999999999999999999999999999999993 3467788888999999999883 445555 999999999
Q ss_pred EEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743 174 CWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (633)
Q Consensus 174 afsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~ 211 (633)
.|+|. .+-+|++++.|+.|++||+|..
T Consensus 195 ~Wsp~-----------~e~vLatgsaDg~irlWDiRra 221 (397)
T KOG4283|consen 195 EWSPS-----------SEWVLATGSADGAIRLWDIRRA 221 (397)
T ss_pred EeccC-----------ceeEEEecCCCceEEEEEeecc
Confidence 99996 4556778889999999999865
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=8.1e-14 Score=148.76 Aligned_cols=191 Identities=17% Similarity=0.216 Sum_probs=153.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC--CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEec
Q 006743 2 YNCKDEHLASISLSGDLILHNLAS--GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWLK 78 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~t--gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~-~v~~l~ 78 (633)
|+|....|++|+.||.++||.+.. ...++.+.- ...+|.+.+|.|+|...+++++.....+.||+.+.+. ++..+.
T Consensus 221 FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~ 299 (514)
T KOG2055|consen 221 FHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY 299 (514)
T ss_pred ecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCC
Confidence 889999999999999999999842 223444332 4678889999999987899999999999999987662 123334
Q ss_pred cCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743 79 QHS-APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (633)
Q Consensus 79 ~H~-~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~ 157 (633)
++. ..+..+.+++++++|+..+..|.|.+....+++.+..+..++.|..++|+.|++.|++++.+|.|++||++.. .+
T Consensus 300 g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~ 378 (514)
T KOG2055|consen 300 GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-SC 378 (514)
T ss_pred CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc-ce
Confidence 443 4578889999999999999999999999999999999999999999999999999999999999999999988 34
Q ss_pred eEEEeecCCCCCe--eEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 158 LTVLRACSSSEAV--SSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 158 v~~l~~~~H~~~V--tsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
+..+. ..+.| +++|.++++. ++++|+..|.|.|||..
T Consensus 379 ~~rf~---D~G~v~gts~~~S~ng~------------ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 379 LHRFV---DDGSVHGTSLCISLNGS------------YLATGSDSGIVNIYDGN 417 (514)
T ss_pred EEEEe---ecCccceeeeeecCCCc------------eEEeccCcceEEEeccc
Confidence 44444 34444 4555556544 55556778999999864
No 139
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=4.7e-14 Score=146.11 Aligned_cols=195 Identities=17% Similarity=0.256 Sum_probs=152.0
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCce-eEEeccCC-CC
Q 006743 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHS-AP 83 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd-g~~lLaSGs~DGtI~IWDl~t~~~~-v~~l~~H~-~~ 83 (633)
..+|++...|.|++||..+++.+.++++ +...++.++|..+ +.+.+.+|+.||+|++||++..... +.....+. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 3588899999999999999999999987 5566777888764 6678999999999999999876533 33444555 46
Q ss_pred eEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCce-eeEe--eCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCC
Q 006743 84 TAGISFSSDDKIIASVGL----DKKLYTYDPGSRRP-SSCI--TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 84 VtsLafSPdg~~LaSgS~----DGtVrIWDlrtgk~-v~~i--~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~ 155 (633)
-.|++.+..++.+++|.. |-.|.+||+|..+. +..+ .|...|++++|+| +.++|++|+.||.|.|||++...
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 778888778888888863 56899999998765 5544 5999999999999 56899999999999999998764
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
..-..+....|...|.++.|..++ ...+++-+..+...+|++....+
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~-----------ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKK-----------YKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCC-----------cceEEEEEccCceeEEEccCCCh
Confidence 433444445688889999998753 22345556688899998865554
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.3e-13 Score=149.49 Aligned_cols=194 Identities=16% Similarity=0.296 Sum_probs=154.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc-eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk-~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
||+.+.+.||++-.||.|.||++..+= ....+.++....|..++|++.++ |++.+-+|.|.-||+.+.+. ...+..
T Consensus 32 A~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~lk~-~~~~d~ 108 (691)
T KOG2048|consen 32 AYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR--LFSSGLSGSITEWDLHTLKQ-KYNIDS 108 (691)
T ss_pred EEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe--EEeecCCceEEEEecccCce-eEEecC
Confidence 688888999999999999999997643 44567777888999999997765 88999999999999998885 456677
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe---eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i---~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k 156 (633)
..+.|++++.+|.+..++.|++||.+++++...++..... ..++.|.++.|+|++..|+.|+.||.|++||...+..
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 8899999999999999999999998888888887765443 3568999999999999999999999999999998743
Q ss_pred ceEEEee--cC----CCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743 157 PLTVLRA--CS----SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (633)
Q Consensus 157 ~v~~l~~--~~----H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~ 211 (633)
.. .... .. ...-|+++.|-. ...+++|..-|.|++||....
T Consensus 189 ~~-~~~~~~d~l~k~~~~iVWSv~~Lr-------------d~tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 189 LH-IITMQLDRLSKREPTIVWSVLFLR-------------DSTIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred EE-EeeecccccccCCceEEEEEEEee-------------cCcEEEecCCceEEEEcccCc
Confidence 22 1111 11 122245555443 235667777899999998643
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.56 E-value=3.5e-14 Score=151.41 Aligned_cols=196 Identities=16% Similarity=0.203 Sum_probs=150.8
Q ss_pred CccCCCC--EEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-
Q 006743 1 MYNCKDE--HLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK- 73 (633)
Q Consensus 1 AFSpdG~--~LaSgs~DG~I~IWDl~tgk----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~- 73 (633)
+|+|..+ .+|+|...|.|-+||+.+.+ .+..+. .|...|.+|.|+|.+...+++.+.||+|++-|+++....
T Consensus 193 ~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~ 271 (498)
T KOG4328|consen 193 AFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE 271 (498)
T ss_pred EecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence 4777654 78888999999999994222 233333 478889999999998878999999999999999876521
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-Ee-eCCCCeEEEEEecC-CCEEEEEEcCCeEEEEE
Q 006743 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-CI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYD 150 (633)
Q Consensus 74 v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~-~i-~h~~~ItsLafSPd-G~~LatGs~DGsV~IWD 150 (633)
+..+......+..+.|+.+...++.+..=|...+||+|++.... .+ -|...|..|+++|. ..+|++++.|++++|||
T Consensus 272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD 351 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWD 351 (498)
T ss_pred HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeee
Confidence 22233344567888888877777777777799999999876532 22 47779999999995 57889999999999999
Q ss_pred CCCCCCce-EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 151 IRGKPQPL-TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 151 lrs~~k~v-~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
+|...... -.+....|...|.+..|+|. ++. |++.+.|+.|+|||..
T Consensus 352 ~R~l~~K~sp~lst~~HrrsV~sAyFSPs-----------~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 352 LRQLRGKASPFLSTLPHRRSVNSAYFSPS-----------GGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred hhhhcCCCCcceecccccceeeeeEEcCC-----------CCc-eEeeccCCceEEeecc
Confidence 99742211 14666789999999999995 334 7777889999999984
No 142
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=4.2e-14 Score=145.29 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=136.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---CCC----ceeEEe
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---GRS----PKVSWL 77 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~---t~~----~~v~~l 77 (633)
++++|++++.|..|.+|++. |+.+..+.... ...+..+.+|+|+ ++++++---.|+||.+- .+. ..+..+
T Consensus 198 ~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq-~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L 274 (420)
T KOG2096|consen 198 NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ-SSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL 274 (420)
T ss_pred CceEEEEecCCCcEEEEecC-Cceeeeecccc-ccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence 46799999999999999997 88887776422 2334568999999 88888888999999972 221 125568
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceeeEe-----eCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-------RRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGR 145 (633)
Q Consensus 78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt-------gk~v~~i-----~h~~~ItsLafSPdG~~LatGs~DGs 145 (633)
++|...|..++|+++...+++++.||++++||+.- .+.+... ...+....+.++|.|+.|+.... ..
T Consensus 275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~ 353 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SD 353 (420)
T ss_pred ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-Cc
Confidence 99999999999999999999999999999999752 1222222 22344558999999999887765 56
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
+++|..+.++.. ..+. ..|.+.|.+|+|+++|+++++|
T Consensus 354 l~~~~se~g~~~-~~~e-~~h~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 354 LKVFASEDGKDY-PELE-DIHSTTISSISYSSDGKYIATC 391 (420)
T ss_pred eEEEEcccCccc-hhHH-HhhcCceeeEEecCCCcEEeee
Confidence 999999886432 2222 2699999999999999999998
No 143
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.56 E-value=6.9e-14 Score=155.01 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=139.8
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 006743 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI 87 (633)
Q Consensus 8 ~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsL 87 (633)
.+++|+.|.+++||-. +++...+++ |...|.+++..|.+ .+++|+.|++|++|.-.+ .++++.+|...|+.+
T Consensus 114 ~~iSgSWD~TakvW~~--~~l~~~l~g-H~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~---~l~tf~gHtD~VRgL 185 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRI--GELVYSLQG-HTASVWAVASLPEN--TYVTGSADKTIKLWKGGT---LLKTFSGHTDCVRGL 185 (745)
T ss_pred ceEecccccceEEecc--hhhhcccCC-cchheeeeeecCCC--cEEeccCcceeeeccCCc---hhhhhccchhheeee
Confidence 3899999999999975 455555665 77778889988886 599999999999998733 367899999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCC
Q 006743 88 SFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167 (633)
Q Consensus 88 afSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~ 167 (633)
++-++ ..|++|+.||.|+.||+.........+|...|+++....++..|+++++|++++||+... +...+. |.
T Consensus 186 ~vl~~-~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e---~~q~I~---lP 258 (745)
T KOG0301|consen 186 AVLDD-SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE---CVQVIT---LP 258 (745)
T ss_pred EEecC-CCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc---eEEEEe---cC
Confidence 99954 468999999999999995444445558999999999888889999999999999999873 345555 33
Q ss_pred -CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 168 -EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 168 -~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
..|+++++-++|..+ +|+.||.|+||-.++
T Consensus 259 ttsiWsa~~L~NgDIv-------------vg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 259 TTSIWSAKVLLNGDIV-------------VGGSDGRVRVFTVDK 289 (745)
T ss_pred ccceEEEEEeeCCCEE-------------EeccCceEEEEEecc
Confidence 478888887755443 334489999986653
No 144
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=8.7e-14 Score=142.86 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=124.8
Q ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe
Q 006743 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI 119 (633)
Q Consensus 40 VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i 119 (633)
..|+.|++.|. +|+.|+.||.|.|||+.+.. ..+.+.+|..+|++++|+++|+.|++++.|..|++||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 56789999998 89999999999999999887 46788999999999999999999999999999999999988776665
Q ss_pred eCCCCeEEEE-----------------------------------------------EecCCCEEEEEEcCCeEEEEECC
Q 006743 120 TYEAPFSSLA-----------------------------------------------FIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 120 ~h~~~ItsLa-----------------------------------------------fSPdG~~LatGs~DGsV~IWDlr 152 (633)
....+|..+. |++.|++|++|...|.+.+||..
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 4443333322 44458899999999999999999
Q ss_pred CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 153 s~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
+. +++..++. .....|..+.|+..|++++. .+.|+.|+.|++....
T Consensus 184 t~-e~vas~ri-ts~~~IK~I~~s~~g~~lii------------NtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 184 TL-ECVASFRI-TSVQAIKQIIVSRKGRFLII------------NTSDRVIRTYEISDID 229 (405)
T ss_pred hh-eeeeeeee-chheeeeEEEEeccCcEEEE------------ecCCceEEEEehhhhc
Confidence 87 34444442 12367888888876555444 4669999999987443
No 145
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=4.7e-13 Score=137.56 Aligned_cols=167 Identities=12% Similarity=0.174 Sum_probs=132.1
Q ss_pred EEEEEECCCcEEEEECCCCc------------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743 8 HLASISLSGDLILHNLASGA------------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (633)
Q Consensus 8 ~LaSgs~DG~I~IWDl~tgk------------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~ 75 (633)
.|++|+....|.-+++.-.. .+..+. .|...+++|+.+ ++ ++++|+.|-+|+|||++.... ..
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~-aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~q-lg 77 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFS-AHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQ-LG 77 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeecccccc-ccccceeEEEec--ce-eEeccCCCCcEEEEeccchhh-hc
Confidence 47888888888888764211 122333 367788988876 45 899999999999999988774 56
Q ss_pred EeccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 76 WLKQHSAPTAGISFSSDD--KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg--~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
.+..|.+.|+++.|.+.- .+|++|+.||.|.+||.....++..+ +|.+.|+.++++|.|+.-++.+.|+.+++||+-
T Consensus 78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 78 ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence 678899999999999854 48999999999999999999888887 688999999999999999999999999999998
Q ss_pred CCCCceEEEeecCCCCCeeEEEEccCCCeEE
Q 006743 153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFI 183 (633)
Q Consensus 153 s~~k~v~~l~~~~H~~~VtsLafsPdg~~La 183 (633)
.+... .++. -...-+.+.|+|.|.+++
T Consensus 158 ~Gr~a-~v~~---L~~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 158 RGRVA-FVLN---LKNKATLVSWSPQGDHFV 184 (362)
T ss_pred cCccc-eeec---cCCcceeeEEcCCCCEEE
Confidence 76432 2222 122334499999887554
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.54 E-value=8e-14 Score=153.31 Aligned_cols=196 Identities=16% Similarity=0.209 Sum_probs=139.7
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEE--EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------ 73 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~--~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~------ 73 (633)
|-|....|++++.|.++++||++..+++.. +.+ |...|..+||.+.+...|++|+.||.|.|||++-....
T Consensus 108 wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~ 186 (720)
T KOG0321|consen 108 WAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD 186 (720)
T ss_pred cCCCceeEEEccCCceeeeeeeccceeecceeecc-cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh
Confidence 567455889999999999999999887765 655 67778889999999999999999999999998533200
Q ss_pred --------------------eEEeccCCCCeEE---EEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEe---------e
Q 006743 74 --------------------VSWLKQHSAPTAG---ISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCI---------T 120 (633)
Q Consensus 74 --------------------v~~l~~H~~~Vts---LafSPdg~~LaSgS~-DGtVrIWDlrtgk~v~~i---------~ 120 (633)
+...+.+...|.. +.+..|...||+++. |+.|++||++........ .
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t 266 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT 266 (720)
T ss_pred hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccC
Confidence 1223345555555 555568889999888 999999999975443221 1
Q ss_pred C---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC-ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEE
Q 006743 121 Y---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ-PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLG 196 (633)
Q Consensus 121 h---~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k-~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlS 196 (633)
+ ...+.++..+..|.+|++.+.|+.|++|++..... ++..+. ++.. ..+ ++..+ ...++.++++
T Consensus 267 ~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s--g~~~--~sf-------~vks~-lSpd~~~l~S 334 (720)
T KOG0321|consen 267 HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS--GKLN--SSF-------YVKSE-LSPDDCSLLS 334 (720)
T ss_pred cccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc--Cccc--cee-------eeeee-cCCCCceEec
Confidence 2 34578888888899999999999999999997532 222222 1111 000 11111 3346777788
Q ss_pred eeCCCeEEccCCCC
Q 006743 197 GAVGDSILMPDPLP 210 (633)
Q Consensus 197 gs~Dg~IkIWDlr~ 210 (633)
++.|....+|.+..
T Consensus 335 gSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSS 348 (720)
T ss_pred cCCCcceeeeeecC
Confidence 88899999998864
No 147
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=9.6e-14 Score=148.17 Aligned_cols=182 Identities=16% Similarity=0.276 Sum_probs=146.4
Q ss_pred CccCCCC-EEEEEECCCcEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743 1 MYNCKDE-HLASISLSGDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (633)
Q Consensus 1 AFSpdG~-~LaSgs~DG~I~IWDl~tgk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l 77 (633)
+|.|+|. .+++++....++.||+.+.+..+ ...+.....+.-...++++. +|+..+..|.|+|.-..+++. +..+
T Consensus 264 ~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~el-i~s~ 341 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKEL-ITSF 341 (514)
T ss_pred eecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhh-hhee
Confidence 4889999 89999999999999998876543 23333445667778899998 899999999999998888774 3333
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCe--EEEEEecCCCEEEEEEcCCeEEEEECCC--
Q 006743 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPF--SSLAFIDDDWILTAGTSNGRVVFYDIRG-- 153 (633)
Q Consensus 78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~I--tsLafSPdG~~LatGs~DGsV~IWDlrs-- 153 (633)
.-.+.|..++|+.+++.|+.++.+|.|++||++...+++.+...+.| +++|.++++.|||+|+..|.|.|||.++
T Consensus 342 -KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 342 -KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred -eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 34678999999999999999999999999999999999888666655 4677778999999999999999999764
Q ss_pred ---CCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006743 154 ---KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (633)
Q Consensus 154 ---~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~ 187 (633)
..+|++.+. .-...|+++.|+++.+.|+.|+.
T Consensus 421 ~s~~PkPik~~d--NLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 421 ASTNPKPIKTVD--NLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred ccCCCCchhhhh--hhheeeeeeeeCcchhhhhhhhh
Confidence 335555554 45677888899988888876643
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.54 E-value=7.8e-14 Score=147.03 Aligned_cols=149 Identities=21% Similarity=0.408 Sum_probs=121.4
Q ss_pred CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--------eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 006743 34 DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--------KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKL 105 (633)
Q Consensus 34 ~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~--------~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtV 105 (633)
-|....+..+.|.++..+.|++|+.|..|+||.+..... ....+..|...|+++.|+|+|.++++|+++|.|
T Consensus 10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence 345677888999988777899999999999999843221 134577899999999999999999999999999
Q ss_pred EEEeCC--------C-----C---ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC
Q 006743 106 YTYDPG--------S-----R---RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE 168 (633)
Q Consensus 106 rIWDlr--------t-----g---k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~ 168 (633)
.+|-.. + . ...... .|...|+.++|+|++.++++++.|..+++||+..+ +....+. +|..
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~--dh~~ 166 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILD--DHEH 166 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeecc--cccc
Confidence 999765 2 1 111112 58899999999999999999999999999999988 4445554 7999
Q ss_pred CeeEEEEccCCCeEEEe
Q 006743 169 AVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 169 ~VtsLafsPdg~~Las~ 185 (633)
.|..++|+|-++++++-
T Consensus 167 yvqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASK 183 (434)
T ss_pred ccceeecchhhhhhhhh
Confidence 99999999977777654
No 149
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.54 E-value=4.6e-14 Score=151.49 Aligned_cols=188 Identities=12% Similarity=0.096 Sum_probs=156.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
+.+||.+..++++.||.|.|||+.+...++.|++ |.+.+.||.++++|. .|.+|+-|.+|+.||++.+.... -...
T Consensus 516 a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG-htDGascIdis~dGt-klWTGGlDntvRcWDlregrqlq--qhdF 591 (705)
T KOG0639|consen 516 AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQLQ--QHDF 591 (705)
T ss_pred hcCCccceeeeeccCCcEEEEEcccceeeecccC-CCCCceeEEecCCCc-eeecCCCccceeehhhhhhhhhh--hhhh
Confidence 4689999999999999999999999999999998 666778999999998 79999999999999998876322 1234
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~ 160 (633)
...|.++..+|++.++++|-.++.|.+......+.....-|+..|.++.|.+.|+++++.+.|..+..|...-+.. +
T Consensus 592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas---i 668 (705)
T KOG0639|consen 592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---I 668 (705)
T ss_pred hhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc---e
Confidence 5789999999999999999999999999887766666667999999999999999999999999999999887643 2
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 161 l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
+.. .....|.++.++- +..++++|+.|+.-.||.+
T Consensus 669 Fqs-kE~SsVlsCDIS~------------ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 FQS-KESSSVLSCDISF------------DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eec-cccCcceeeeecc------------CceEEEecCCCcceEEEEE
Confidence 221 3467788888776 4555666677777666654
No 150
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.54 E-value=6.6e-14 Score=142.35 Aligned_cols=152 Identities=27% Similarity=0.411 Sum_probs=129.1
Q ss_pred CccC--CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743 1 MYNC--KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 1 AFSp--dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~ 78 (633)
+|+| ||+.+++. .|+++..||+++.+....+...|...|+.+.|+|+.+++|++|++||.|+|||.+..+.++..+.
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 4666 67777765 58999999999999999999889999999999999999999999999999999999888899999
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCC------------------------------CceeeEeeCCCCeEE
Q 006743 79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS------------------------------RRPSSCITYEAPFSS 127 (633)
Q Consensus 79 ~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrt------------------------------gk~v~~i~h~~~Its 127 (633)
+|...|+++.|+| ..++|++|+.|..|.+|.... |.....-.|++.|++
T Consensus 256 ~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~ 335 (370)
T KOG1007|consen 256 GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA 335 (370)
T ss_pred CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE
Confidence 9999999999999 778999999999999996521 111111248899999
Q ss_pred EEEec-CCCEEEEEEcCCeEEEEECCC
Q 006743 128 LAFID-DDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 128 LafSP-dG~~LatGs~DGsV~IWDlrs 153 (633)
++|+. |..++|+-+.||+|.|=.+..
T Consensus 336 ~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 336 LAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred EeeccCCCeeEEEeccCceEEeecCCh
Confidence 99997 566778889999999866543
No 151
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.53 E-value=1.1e-13 Score=140.69 Aligned_cols=176 Identities=18% Similarity=0.254 Sum_probs=136.1
Q ss_pred cEEEEECCCCc---------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-----cCCC
Q 006743 17 DLILHNLASGA---------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-----QHSA 82 (633)
Q Consensus 17 ~I~IWDl~tgk---------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-----~H~~ 82 (633)
.+.||.+.... ++..+...+-..|.||.|.|++. .+++.. |..|.+|++......+..+. +|..
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~ 171 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRH 171 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeecccccccccc
Confidence 47899886432 33334322334789999999987 555544 89999999977664333322 3455
Q ss_pred CeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCCc
Q 006743 83 PTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQP 157 (633)
Q Consensus 83 ~VtsLafSP--dg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG-~~LatGs~DGsV~IWDlrs~~k~ 157 (633)
..++-+|+| +++.+++.+ |+++..||+|+.+....+ .|...|..+.|+|+. .+|++|+.||.|+|||.|+.+.+
T Consensus 172 ~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred eecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence 677889999 677766654 889999999998887777 588999999999975 56788999999999999998888
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
+..+. +|.-+|.++.|+|. ...++++++.|..|.+|-.
T Consensus 251 v~el~--~HsHWvW~VRfn~~-----------hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 251 VQELP--GHSHWVWAVRFNPE-----------HDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred ccccC--CCceEEEEEEecCc-----------cceEEEecCCCceeEEEec
Confidence 88777 89999999999995 5667788888998888843
No 152
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2e-13 Score=139.90 Aligned_cols=161 Identities=21% Similarity=0.310 Sum_probs=129.8
Q ss_pred EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 006743 31 ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP 110 (633)
Q Consensus 31 ~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl 110 (633)
++.....+.|+.|.|+|.+. .|+++++||++++||+.... ......|..++.+++|.+ ...+++|+-||.|+.+|+
T Consensus 7 ~l~npP~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred ccCCCChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccC-CceEEEeccCceEEEEEe
Confidence 44555577899999998877 57777899999999998876 344567999999999985 678999999999999999
Q ss_pred CCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743 111 GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (633)
Q Consensus 111 rtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd 190 (633)
.++.....-.|..+|.|+.+.+....+++|++|++|++||.|+. .....+ .....|.++...
T Consensus 83 n~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~---d~~kkVy~~~v~-------------- 144 (323)
T KOG1036|consen 83 NTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTF---DQGKKVYCMDVS-------------- 144 (323)
T ss_pred cCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-cccccc---ccCceEEEEecc--------------
Confidence 99998888889999999999998889999999999999999974 222222 234467766643
Q ss_pred CeEEEEeeCCCeEEccCCCCCCC
Q 006743 191 ETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 191 ~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
+..|+.|..|..|.+||+|....
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred CCEEEEeecCceEEEEEcccccc
Confidence 33455556699999999996554
No 153
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.53 E-value=9.7e-14 Score=141.29 Aligned_cols=188 Identities=22% Similarity=0.277 Sum_probs=146.6
Q ss_pred EEEEEECCCcEEEEECCC--Ccee--EEE----eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--eeEEe
Q 006743 8 HLASISLSGDLILHNLAS--GAKA--AEL----KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--KVSWL 77 (633)
Q Consensus 8 ~LaSgs~DG~I~IWDl~t--gk~v--~~~----~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~--~v~~l 77 (633)
+||+. +..+++|.+.. .+.. ..+ ..++..+++...|+.-+.++|.+++-|-+..|||++.+.. ....+
T Consensus 115 lLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 115 LLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred hhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 45544 45799999863 2211 111 2234678889999988888999999999999999988632 35667
Q ss_pred ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe---e-CCCCeEEEEEec-CCCEEEEEEcC-CeEEEEE
Q 006743 78 KQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI---T-YEAPFSSLAFID-DDWILTAGTSN-GRVVFYD 150 (633)
Q Consensus 78 ~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i---~-h~~~ItsLafSP-dG~~LatGs~D-GsV~IWD 150 (633)
..|..+|++++|.. .-+.|++++.||.||+||+|...-..++ . ...+...++|++ |-+++|+-..| ..|.|.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 89999999999998 4578999999999999999986554444 2 256788999998 45778875554 5699999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
+|....++..++ +|.+.|.+|+|.|. ....+.+++.|..+.|||+..
T Consensus 273 iR~P~tpva~L~--~H~a~VNgIaWaPh-----------S~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 273 IRVPCTPVARLR--NHQASVNGIAWAPH-----------SSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ecCCCcceehhh--cCcccccceEecCC-----------CCceeeecCCcceEEEEeccc
Confidence 999888887777 89999999999996 455667778899999999953
No 154
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.1e-13 Score=146.50 Aligned_cols=202 Identities=20% Similarity=0.229 Sum_probs=149.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe-cc
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL-KQ 79 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l-~~ 79 (633)
||+.+|..|++|+.||.++||++.+...+..... |...|.++.|+||+. +|++-+.| ..+||+++++.+....- ..
T Consensus 151 af~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~-~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a~~t~~~ 227 (398)
T KOG0771|consen 151 AFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA-HHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALARKTPFS 227 (398)
T ss_pred EEcCCCCEeeeccccceEEEEecCcchhhhhhHh-hcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhhhcCCcc
Confidence 5889999999999999999999888777776665 445689999999998 89999998 99999998885322211 23
Q ss_pred CCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEeCCCCce------eeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743 80 HSAPTAGISFSSDD-----KIIASVGLDKKLYTYDPGSRRP------SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (633)
Q Consensus 80 H~~~VtsLafSPdg-----~~LaSgS~DGtVrIWDlrtgk~------v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~I 148 (633)
.......+.|..|+ .+++....-+.|+.||+....- ...+.....|.+++.++||++++.|+.||.|-|
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai 307 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI 307 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence 34456667787755 2333333445677777653221 122234568999999999999999999999999
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
|+....+. +.... ..|...|+.+.|+|+.++++.. ..+.+..++.-..|..+++-.+
T Consensus 308 ~~~~~lq~-~~~vk-~aH~~~VT~ltF~Pdsr~~~sv-Ss~~~~~v~~l~vd~~~~~~~~ 364 (398)
T KOG0771|consen 308 YDAKSLQR-LQYVK-EAHLGFVTGLTFSPDSRYLASV-SSDNEAAVTKLAVDKTMQLHRL 364 (398)
T ss_pred EEeceeee-eEeeh-hhheeeeeeEEEcCCcCccccc-ccCCceeEEEEeeccccccccc
Confidence 99988743 33332 3799999999999999998875 4456666676677777666544
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.9e-14 Score=165.13 Aligned_cols=193 Identities=15% Similarity=0.244 Sum_probs=146.4
Q ss_pred ccCCCC-EEEEEECCCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 2 YNCKDE-HLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 2 FSpdG~-~LaSgs~DG~I~IWDl~tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
||+... +||+|+.||.|.|||++..+.-..... ...+.|.+|.|+..-.++|++++.+|.+.|||++..+.. ..+..
T Consensus 124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi-i~ls~ 202 (1049)
T KOG0307|consen 124 FNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI-IKLSD 202 (1049)
T ss_pred ccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc-ccccc
Confidence 666654 999999999999999987554433321 134678999999998899999999999999999988754 44444
Q ss_pred CCC--CeEEEEEcC-CCCEEEEEeCCC---eEEEEeCCC-CceeeEe-eCCCCeEEEEEecCC-CEEEEEEcCCeEEEEE
Q 006743 80 HSA--PTAGISFSS-DDKIIASVGLDK---KLYTYDPGS-RRPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYD 150 (633)
Q Consensus 80 H~~--~VtsLafSP-dg~~LaSgS~DG---tVrIWDlrt-gk~v~~i-~h~~~ItsLafSPdG-~~LatGs~DGsV~IWD 150 (633)
|.. .+..++|+| +...|+++++|. .|.+||+|. ..+++++ .|...|.+|.|++.+ ++|++++.|+.|.+|+
T Consensus 203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN 282 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWN 282 (1049)
T ss_pred CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEec
Confidence 443 477899999 456677777665 799999986 3455665 799999999999955 8999999999999999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
.++++ .+..+. ....++..+.|+|...-+++ ..+.||.|.|+.+.
T Consensus 283 ~~tgE-vl~~~p--~~~nW~fdv~w~pr~P~~~A-----------~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 283 PNTGE-VLGELP--AQGNWCFDVQWCPRNPSVMA-----------AASFDGKISIYSLQ 327 (1049)
T ss_pred CCCce-EeeecC--CCCcceeeeeecCCCcchhh-----------hheeccceeeeeee
Confidence 99973 223332 46788999999997554333 33446666666553
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.52 E-value=2e-13 Score=151.29 Aligned_cols=203 Identities=20% Similarity=0.272 Sum_probs=155.2
Q ss_pred ccCCCCEEEEEECCC-----cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---
Q 006743 2 YNCKDEHLASISLSG-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--- 73 (633)
Q Consensus 2 FSpdG~~LaSgs~DG-----~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~--- 73 (633)
.+|+|+++|++++.. .|++|+..+...+..+.+ |.-.|+-++|+||++ +|++.+.|.++.+|........
T Consensus 533 ~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 533 ISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred ecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchhhh
Confidence 478999999998764 489999988888888886 666778899999998 8999999999999998443321
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceee---EeeCCCCeEEEEEecC-----CCEEEEEEcC
Q 006743 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPSS---CITYEAPFSSLAFIDD-----DWILTAGTSN 143 (633)
Q Consensus 74 v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg--k~v~---~i~h~~~ItsLafSPd-----G~~LatGs~D 143 (633)
....+.|...|.++.|+|++.+|++++.|++|++|..... +.+. .+.+...|++++|.|- +..+++|-+.
T Consensus 611 fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~ 690 (764)
T KOG1063|consen 611 FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK 690 (764)
T ss_pred hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc
Confidence 3447899999999999999999999999999999998876 3332 3368899999999882 4478899999
Q ss_pred CeEEEEECCCCCC---------ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 144 GRVVFYDIRGKPQ---------PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 144 GsV~IWDlrs~~k---------~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
|.|.+|......+ +...-...+|.+.|+.+.|.|....--. ...+...|..++.|..++++.+
T Consensus 691 GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~--~~~~~l~la~~g~D~~vri~nv 762 (764)
T KOG1063|consen 691 GEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWV--EDKEWLNLAVGGDDESVRIFNV 762 (764)
T ss_pred cEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccc--cccceeEEeeecccceeEEeec
Confidence 9999998652111 1111123367888999999984211000 1123445677888999999876
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.51 E-value=3.6e-12 Score=130.04 Aligned_cols=192 Identities=23% Similarity=0.381 Sum_probs=147.6
Q ss_pred cCCCC-EEEEEEC-CCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCCceeEEec
Q 006743 3 NCKDE-HLASISL-SGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 3 SpdG~-~LaSgs~-DG~I~IWDl~t-gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~-DGtI~IWDl~t~~~~v~~l~ 78 (633)
++++. +++..+. |+.+.+||... ......+.. |...|.+++|++++. +++.++. |+.+++|++.... .+..+.
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 195 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG-HSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK-PLSTLA 195 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEec-CcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc-eEEeec
Confidence 45566 4444444 89999999987 666666765 667788999999998 6777775 9999999998755 366777
Q ss_pred cCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceee-Ee-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743 79 QHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSS-CI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 79 ~H~~~VtsLafSPdg~-~LaSgS~DGtVrIWDlrtgk~v~-~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~ 155 (633)
.|...|.+++|+|++. .+++++.|+.|++||...+.... .+ .|.... ...|++++.++++++.|+.+++||++...
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 8999999999999887 56666999999999999777766 34 455554 33899999899999999999999999875
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
..+..+ ..|...|.++.|.|++..+ ++++.|+.+++||.....
T Consensus 275 ~~~~~~--~~~~~~v~~~~~~~~~~~~------------~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 275 SLLRTL--SGHSSSVLSVAFSPDGKLL------------ASGSSDGTVRLWDLETGK 317 (466)
T ss_pred cEEEEE--ecCCccEEEEEECCCCCEE------------EEeeCCCcEEEEEcCCCc
Confidence 533333 4788999999999854333 334556778888775443
No 158
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.50 E-value=4.5e-13 Score=148.51 Aligned_cols=176 Identities=15% Similarity=0.203 Sum_probs=133.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEe--CCCCCcEEEEEEccC----------CCeEEEEEeCCCeEEEEECCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELK--DPNEQVLRVLDYSRN----------SRHLLVTAGDDGTLHLWDTTG 69 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~--~~~~~~VssLafSpd----------g~~lLaSGs~DGtI~IWDl~t 69 (633)
|++...+|...-+|..|+|||+.+-+.+.+.. --|...|..|.--|. -+..|++|+.|++|++||+..
T Consensus 332 Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ 411 (1080)
T KOG1408|consen 332 FDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAF 411 (1080)
T ss_pred ecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccc
Confidence 67777888888999999999998755443211 114444555444331 012599999999999999965
Q ss_pred CCce-e-----------E------------------------EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 006743 70 RSPK-V-----------S------------------------WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR 113 (633)
Q Consensus 70 ~~~~-v-----------~------------------------~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg 113 (633)
.... + . ........+.+++++|++++|++|..-|+|+|||+..-
T Consensus 412 ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l 491 (1080)
T KOG1408|consen 412 CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL 491 (1080)
T ss_pred ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh
Confidence 2100 0 0 01123456899999999999999999999999999887
Q ss_pred ceeeEe-eCCCCeEEEEEec---CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 006743 114 RPSSCI-TYEAPFSSLAFID---DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179 (633)
Q Consensus 114 k~v~~i-~h~~~ItsLafSP---dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg 179 (633)
+....+ .|+..|.|+.|+. ..+.|++++.|+.|+|||+.....++..+. +|...|+++.|.-+|
T Consensus 492 ~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld--~HSssITsvKFa~~g 559 (1080)
T KOG1408|consen 492 EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD--GHSSSITSVKFACNG 559 (1080)
T ss_pred hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc--ccccceeEEEEeecC
Confidence 665555 6999999999986 367899999999999999988767777777 899999999998766
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.50 E-value=4e-13 Score=138.48 Aligned_cols=196 Identities=17% Similarity=0.212 Sum_probs=150.0
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCC-CC---CcEEEEEEccCCCeEEEEEeCCCeEEEEEC-CCCC-ceeEEe
Q 006743 4 CKDEHLASISLSGDLILHNLASGAKAAELKDP-NE---QVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TGRS-PKVSWL 77 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~-~~---~~VssLafSpdg~~lLaSGs~DGtI~IWDl-~t~~-~~v~~l 77 (633)
|+-.++++.+.+.-|.+||.-+|+..+.+..- |. ..-.+++|+|||. .|++ +....|+|+|+ +.+. +.+...
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfa-GykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFA-GYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEee-cccceEEEeeccCCCCCCcchhh
Confidence 66778899999999999999999988877642 11 1234699999998 4554 56789999999 3332 222222
Q ss_pred c-----cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 006743 78 K-----QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS-NGRVVFY 149 (633)
Q Consensus 78 ~-----~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~-DGsV~IW 149 (633)
. +..+.|.|++|+| +.+.+++|+.-..+-||.-..+.++..+ +|++.|+.++|.++|+.|++|.. |..|.+|
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 2 3367899999999 7789999999999999988888887776 69999999999999999999875 7889999
Q ss_pred ECCCCCCceEEEeecCCCC-CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 150 DIRGKPQPLTVLRACSSSE-AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~-~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
|+|....++..+. .|.+ .-..|-|+- ...+.+|++|+.||.|++||+..+..
T Consensus 279 DiR~~~~pv~~L~--rhv~~TNQRI~FDl----------d~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 279 DIRYSRDPVYALE--RHVGDTNQRILFDL----------DPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred eehhccchhhhhh--hhccCccceEEEec----------CCCCceeeccCCCccEEEEecCCCCC
Confidence 9999877665555 4544 333444442 23566777778899999999987554
No 160
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=5.4e-13 Score=142.73 Aligned_cols=170 Identities=18% Similarity=0.252 Sum_probs=134.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC---------CceeEEEeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLAS---------GAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRS 71 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~t---------gk~v~~~~~~~~~~VssLafSpdg-~~lLaSGs~DGtI~IWDl~t~~ 71 (633)
|+-||.+|++|++||.|.+|.+-+ -+..+.+. +|.-.|+++.....+ +.++++++.|.++++||+..+.
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence 788999999999999999998732 23455555 467778888876552 3379999999999999999887
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----------------eeeE-eeCCC--CeEEEEEec
Q 006743 72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR----------------PSSC-ITYEA--PFSSLAFID 132 (633)
Q Consensus 72 ~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk----------------~v~~-i~h~~--~ItsLafSP 132 (633)
.... ......+.+++.+|.++.+++|+.+|.|.+.++.... .+.. .+|.+ .|+|++++-
T Consensus 210 LLlt--i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 210 LLLT--ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred eeEE--EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 4332 3456789999999999999999999999998875322 1112 25666 999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743 133 DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (633)
Q Consensus 133 dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP 177 (633)
||..|++|+.||.|+|||+... ++++.+. ...++|+.+.+.|
T Consensus 288 DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~--~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCVWDIYSK-QCIRTLQ--TSKGPVTNLQINP 329 (476)
T ss_pred CccEEEeeCCCCCEEEEecchH-HHHHHHh--hhccccceeEeec
Confidence 9999999999999999999987 4555554 2568899999876
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.6e-13 Score=148.41 Aligned_cols=190 Identities=15% Similarity=0.212 Sum_probs=141.8
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC---------------
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--------------- 67 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl--------------- 67 (633)
.|.|.+|++|+.||+|+||.+.+|.++..+. ..+.|.||+|+|.++..+++.+....+.|-+-
T Consensus 409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell 486 (733)
T KOG0650|consen 409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELL 486 (733)
T ss_pred cCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhh
Confidence 5789999999999999999999999999887 46789999999988765555555444444332
Q ss_pred ------------------C---CCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCc---------
Q 006743 68 ------------------T---GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRR--------- 114 (633)
Q Consensus 68 ------------------~---t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG---tVrIWDlrtgk--------- 114 (633)
. ....-+.....|...|..|.|+..|.||+++.-++ .|.|+++...+
T Consensus 487 ~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk 566 (733)
T KOG0650|consen 487 ASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK 566 (733)
T ss_pred hcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcC
Confidence 1 00111234456888899999999999999887653 67777764321
Q ss_pred --------------------------------eeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006743 115 --------------------------------PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL 161 (633)
Q Consensus 115 --------------------------------~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l 161 (633)
.+..+ .....|..++++|.|..|++|+.|+.+..||+.-..++++.+
T Consensus 567 G~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l 646 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL 646 (733)
T ss_pred CceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh
Confidence 11000 123457789999999999999999999999999888888888
Q ss_pred eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 162 ~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
. .|...|++++|++.- .++.+++.|+.+.|+.-
T Consensus 647 r--~H~~avr~Va~H~ry------------PLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 647 R--LHEKAVRSVAFHKRY------------PLFASGSDDGTVIVFHG 679 (733)
T ss_pred h--hhhhhhhhhhhcccc------------ceeeeecCCCcEEEEee
Confidence 8 799999999999843 44555566777777754
No 162
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.48 E-value=7.2e-14 Score=145.55 Aligned_cols=150 Identities=15% Similarity=0.222 Sum_probs=127.5
Q ss_pred ccCCCC-EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 2 YNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 2 FSpdG~-~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
|||... .|++|+.|+.|.+||+..+.++.++.. .-..+.|+|+|.+ ..|++|.+|..++.||++.-...+....+|
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceeee--eccccceecCccc-cceeeccccccceehhhhhhcccchhhccc
Confidence 566654 567777999999999999998877653 2334569999955 479999999999999999888778888999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~ 154 (633)
...|.+++|+|.|+-|++|+.|++|+||..+.+..--+. ..-..|.|+.|+-|.++|++|+.|+.|++|..+..
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 999999999999999999999999999999876543332 34567999999999999999999999999988754
No 163
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.2e-12 Score=128.82 Aligned_cols=205 Identities=15% Similarity=0.187 Sum_probs=145.2
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC---------Cc-eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLAS---------GA-KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~t---------gk-~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~ 70 (633)
+|+|.+++|++|..+|.|.++.+++ ++ .+...+ .|...+..++|..+ +|++|++ |.|+=|..+..
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq-ahdgpiy~~~f~d~---~Lls~gd-G~V~gw~W~E~ 91 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ-AHDGPIYYLAFHDD---FLLSGGD-GLVYGWEWNEE 91 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecc-ccCCCeeeeeeehh---heeeccC-ceEEEeeehhh
Confidence 5899999999999999999998853 22 233334 47788888999833 5666665 99999987433
Q ss_pred Cce-------eEEeccCC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEE
Q 006743 71 SPK-------VSWLKQHS-----APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWIL 137 (633)
Q Consensus 71 ~~~-------v~~l~~H~-----~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~L 137 (633)
... ......|. ..|+++-..|..+-++.++.|+.++.||+++|+..+.+ +|.+.|.++.-...+..|
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI 171 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce
Confidence 210 00111122 46899999997777788889999999999999999888 699999999987777789
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCc
Q 006743 138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (633)
Q Consensus 138 atGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP-dg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss 216 (633)
++|++||+|+|||.++. +.+.++..+.|..... | .|++|-+- ..++..+++|+ ...+.+|.+|...+...
T Consensus 172 lsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lR-----p~~g~wigal--a~~edWlvCGg-Gp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 172 LSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLR-----PDWGKWIGAL--AVNEDWLVCGG-GPKLSLWHLRSSESTCV 242 (325)
T ss_pred eecCCCccEEEEecccc-ceeEEeccccChhhcC-----cccCceeEEE--eccCceEEecC-CCceeEEeccCCCceEE
Confidence 99999999999999998 4566666544432211 1 12332221 12445555554 67889999987766554
Q ss_pred ccc
Q 006743 217 VSL 219 (633)
Q Consensus 217 ~s~ 219 (633)
.+.
T Consensus 243 fpi 245 (325)
T KOG0649|consen 243 FPI 245 (325)
T ss_pred Eec
Confidence 443
No 164
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.47 E-value=4.1e-13 Score=141.63 Aligned_cols=151 Identities=15% Similarity=0.238 Sum_probs=125.8
Q ss_pred ccCCCC-EEEEEECCCcEEEEECCCCce------eE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC----
Q 006743 2 YNCKDE-HLASISLSGDLILHNLASGAK------AA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---- 68 (633)
Q Consensus 2 FSpdG~-~LaSgs~DG~I~IWDl~tgk~------v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~---- 68 (633)
|..+.. .|++|+.|..|+||.++.+.. +. ....+|...|++|.|+|+|+ +|++|+++|.|.+|...
T Consensus 21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRI 99 (434)
T ss_pred eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCC
Confidence 444554 899999999999998864321 11 11235788899999999998 99999999999999875
Q ss_pred ----C-----C-C-ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCE
Q 006743 69 ----G-----R-S-PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWI 136 (633)
Q Consensus 69 ----t-----~-~-~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~ 136 (633)
+ . . .....+.+|...|+.++|+|+++++++++.|+.+++||+..|+..... .|...+..++|.|.+++
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy 179 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY 179 (434)
T ss_pred ccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence 2 1 0 124567789999999999999999999999999999999999998887 69999999999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 006743 137 LTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 137 LatGs~DGsV~IWDlrs 153 (633)
+++-+.|...+.+++..
T Consensus 180 v~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 180 VASKSSDRHPEGFSAKL 196 (434)
T ss_pred hhhhccCcccceeeeee
Confidence 99999998777777654
No 165
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.46 E-value=6.2e-12 Score=135.59 Aligned_cols=174 Identities=15% Similarity=0.272 Sum_probs=141.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------- 73 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~------- 73 (633)
+|.++|+ +++|..+|.|.||+..+.+..+... .|...|.+++...+|. |++|+.|..|..||-.-.+..
T Consensus 253 ~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 253 TFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred EEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc--EeecCccceEEeccccccccccccCchh
Confidence 3667776 5689999999999998777777777 5777888899999986 777999999999984211100
Q ss_pred --------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC
Q 006743 74 --------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY 121 (633)
Q Consensus 74 --------------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h 121 (633)
.....+|......++.+|+.+.+++++.|+.+++|+ ..+++.....
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~ 406 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII 406 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe
Confidence 112456888899999999999999999999999999 5666666677
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 122 EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 122 ~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
..++.|+.|+|.| .|+.|...|...+.|.++. ..+.+.. ...+++++.|+|+|.+++.+
T Consensus 407 ~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~---d~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 407 EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHT---DNEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred cCceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEEe---cCCceEEEEEcCCCCEEEEe
Confidence 8999999999999 9999999999999999985 3333333 38899999999998888876
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.46 E-value=1.9e-11 Score=124.71 Aligned_cols=197 Identities=25% Similarity=0.388 Sum_probs=149.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc-eeEEEeCCCCCcEEEEEE-ccCCCeEEEEEeC-CCeEEEEECCCCCceeEEec
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDY-SRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk-~v~~~~~~~~~~VssLaf-Spdg~~lLaSGs~-DGtI~IWDl~t~~~~v~~l~ 78 (633)
|.+.+..++.++.|+.+.+|+...+. .+..+...+...+..+.+ .+++..+++..+. |+.+.+||..........+.
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 152 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE 152 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe
Confidence 56778888889899999999998876 666666533335566666 6666634554444 99999999987223467788
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCC
Q 006743 79 QHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW-ILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 79 ~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~-~LatGs~DGsV~IWDlrs~~ 155 (633)
.|...|.+++|+|++.++++++. |+.+++||+..+..+..+ .|...|.+++|+|++. ++++++.|+.|++||.....
T Consensus 153 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~ 232 (466)
T COG2319 153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK 232 (466)
T ss_pred cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc
Confidence 99999999999999998888886 999999999987777666 4799999999999998 55555999999999888542
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
.... ....|...+ ...|++++ .++++++.|+.+++||++....
T Consensus 233 -~~~~-~~~~~~~~~-~~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 233 -LLRS-TLSGHSDSV-VSSFSPDG------------SLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred -EEee-ecCCCCcce-eEeECCCC------------CEEEEecCCCcEEEeeecCCCc
Confidence 2221 223566664 33787754 4445677899999999976554
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.45 E-value=7.1e-13 Score=141.51 Aligned_cols=175 Identities=19% Similarity=0.234 Sum_probs=140.1
Q ss_pred eeEEEeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCC---CCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCC
Q 006743 28 KAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTG---RSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLD 102 (633)
Q Consensus 28 ~v~~~~~~~~~~VssLafSpdg~-~lLaSGs~DGtI~IWDl~t---~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~D 102 (633)
....++. +...|.+++|+|... .++++|+.-|+|-+||+.+ ....+..+..|..+|.+|.|+| +...|++.+.|
T Consensus 178 ~~~v~kv-~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 178 ILNVAKV-TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred ecceeEe-cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 3334443 567899999999876 7899999999999999953 2333667789999999999999 88899999999
Q ss_pred CeEEEEeCCCCceeeEe---eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 006743 103 KKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179 (633)
Q Consensus 103 GtVrIWDlrtgk~v~~i---~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg 179 (633)
|+|++-|++.......+ .....+..+.|+.+...++.+..=|...+||.|+....+..+. -|...|++|+++|.
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~--lh~kKI~sv~~NP~- 333 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR--LHKKKITSVALNPV- 333 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh--hhhcccceeecCCC-
Confidence 99999999876433222 2455678888998888888888888999999999876555555 58889999999996
Q ss_pred CeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCc
Q 006743 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (633)
Q Consensus 180 ~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss 216 (633)
...++++++.|++.+|||+|...+..+
T Consensus 334 ----------~p~~laT~s~D~T~kIWD~R~l~~K~s 360 (498)
T KOG4328|consen 334 ----------CPWFLATASLDQTAKIWDLRQLRGKAS 360 (498)
T ss_pred ----------CchheeecccCcceeeeehhhhcCCCC
Confidence 345677889999999999997766554
No 168
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=4e-12 Score=141.01 Aligned_cols=178 Identities=18% Similarity=0.206 Sum_probs=139.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEecc
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQ 79 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~l~~ 79 (633)
+|. +|..|.+.+.+|.|.-||+.+++....+.. .+..|..++.+|.+. .++.|++||.++.++....... ...+..
T Consensus 76 ~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~r 152 (691)
T KOG2048|consen 76 AWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDS-NGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMR 152 (691)
T ss_pred EEc-cCCeEEeecCCceEEEEecccCceeEEecC-CCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeeccc
Confidence 466 566788889999999999999999888874 678899999999987 8999999997777777655522 233445
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---------CCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---------h~~~ItsLafSPdG~~LatGs~DGsV~IWD 150 (633)
.++.|.++.|+|++..|+.|+.||.|++||..++..+..+. ...-|.++.+-.+ ..|++|...|+|.+||
T Consensus 153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWD 231 (691)
T ss_pred ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEc
Confidence 66899999999999999999999999999999988776331 1223667777655 4789999999999999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
...+. .+.... .|...|.+++..+++.+++++
T Consensus 232 ~~~gT-LiqS~~--~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 232 SIFGT-LIQSHS--CHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred ccCcc-hhhhhh--hhhcceeEEEEcCCCCeEEEc
Confidence 99873 223233 688999999998865555544
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.45 E-value=1.8e-12 Score=133.65 Aligned_cols=181 Identities=15% Similarity=0.258 Sum_probs=140.6
Q ss_pred CccCCCCEEEEEECCCcEEEEEC-CCCceeEE---E---eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 006743 1 MYNCKDEHLASISLSGDLILHNL-ASGAKAAE---L---KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl-~tgk~v~~---~---~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~ 73 (633)
+|+|||.+|++| ....|+|||+ +.|+.... + +......+.|++|+|.....++.|+....+-||.-.+..+
T Consensus 165 ~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p- 242 (406)
T KOG2919|consen 165 QFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP- 242 (406)
T ss_pred EecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-
Confidence 599999999865 6779999998 44432211 1 1123678999999999887899999999999998887775
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCC-ceeeEe-eCCC-CeEE--EEEecCCCEEEEEEcCCeEE
Q 006743 74 VSWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSR-RPSSCI-TYEA-PFSS--LAFIDDDWILTAGTSNGRVV 147 (633)
Q Consensus 74 v~~l~~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlrtg-k~v~~i-~h~~-~Its--LafSPdG~~LatGs~DGsV~ 147 (633)
...+.+|.+.|+.++|.++|+.|++|.. |-.|-.||+|.- .++..+ .|.+ .-.. ....|++++|++|+.||.|+
T Consensus 243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence 6778899999999999999999999986 568999999964 344333 2322 2222 45568899999999999999
Q ss_pred EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 148 IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
+||++....++..+. .|...+..++++|--++++++
T Consensus 323 vwdlk~~gn~~sv~~--~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 323 VWDLKDLGNEVSVTG--NYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred EEecCCCCCcccccc--cccccccceecCcccceeeec
Confidence 999998555445444 688999999999987777665
No 170
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.1e-11 Score=127.36 Aligned_cols=191 Identities=13% Similarity=0.198 Sum_probs=137.3
Q ss_pred CCCEEEEEECCCcEEEEECCC---------CceeEEEeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCCcee
Q 006743 5 KDEHLASISLSGDLILHNLAS---------GAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRSPKV 74 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~t---------gk~v~~~~~~~~~~VssLafSpdg-~~lLaSGs~DGtI~IWDl~t~~~~v 74 (633)
-|+.+|+++.|++|.||.-.. ....+.+.. ....|.+|+|.|.. .-.|++++.||.|+||+........
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS 150 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence 388999999999999997521 113344443 56678899999863 2378999999999999985433221
Q ss_pred -----EE-------eccCCCCeEEEEEcC---CCCEEEEEeCC-----CeEEEEeCCCC--cee--eEe-eCCCCeEEEE
Q 006743 75 -----SW-------LKQHSAPTAGISFSS---DDKIIASVGLD-----KKLYTYDPGSR--RPS--SCI-TYEAPFSSLA 129 (633)
Q Consensus 75 -----~~-------l~~H~~~VtsLafSP---dg~~LaSgS~D-----GtVrIWDlrtg--k~v--~~i-~h~~~ItsLa 129 (633)
+. ...+.....|+.|+| ...+|+.|+.+ +.++||....+ +.. ..+ .|..+|++++
T Consensus 151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~ 230 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDIS 230 (361)
T ss_pred cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeee
Confidence 11 124667789999998 55678888876 47888876542 222 222 6899999999
Q ss_pred EecC----CCEEEEEEcCCeEEEEECCCCC----------------CceEEEe-ecCCCCCeeEEEEccCCCeEEEeccC
Q 006743 130 FIDD----DWILTAGTSNGRVVFYDIRGKP----------------QPLTVLR-ACSSSEAVSSLCWQRAKPVFIDETTC 188 (633)
Q Consensus 130 fSPd----G~~LatGs~DGsV~IWDlrs~~----------------k~v~~l~-~~~H~~~VtsLafsPdg~~Las~s~~ 188 (633)
|.|+ ...||+++.|| |+||.++... -++..+. ..+|.+.|..+.|+-
T Consensus 231 wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm----------- 298 (361)
T KOG2445|consen 231 WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM----------- 298 (361)
T ss_pred eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-----------
Confidence 9995 56899999999 9999998311 1223332 337999999999987
Q ss_pred CCCeEEEEeeCCCeEEccCCC
Q 006743 189 KAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 189 sd~~lLlSgs~Dg~IkIWDlr 209 (633)
.+.+|.+.+.||.|++|...
T Consensus 299 -tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 299 -TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred -eeeEEeecCCCceeeehhhh
Confidence 45566666889999999653
No 171
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=2.8e-12 Score=139.87 Aligned_cols=195 Identities=17% Similarity=0.197 Sum_probs=150.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC--------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--
Q 006743 1 MYNCKDEHLASISLSGDLILHNLAS--------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-- 70 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~t--------gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~-- 70 (633)
+|++..-.|++|+.||.|++|+++. -+.+.+|.+ |..+|-|+++.+++. .+++|+.||+|+.|++...
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCce-EEEeeccCceeeeeccCCCCC
Confidence 4677778999999999999999932 235667776 667778899999987 7999999999999966421
Q ss_pred -------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----------------------------
Q 006743 71 -------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP---------------------------- 115 (633)
Q Consensus 71 -------~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~---------------------------- 115 (633)
.....++.+|.+.|+.++++.....|++|+.||+|+.|+.....+
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence 122457889999999999999888899999999999998743322
Q ss_pred ----------------eeEee--------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCee
Q 006743 116 ----------------SSCIT--------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVS 171 (633)
Q Consensus 116 ----------------v~~i~--------h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~Vt 171 (633)
+.++. ....+.-+.++|.+.+.+++..|+.|+++|..++. ++.... .|...++
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~-~l~s~~--a~~~svt 535 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK-ILHSMV--AHKDSVT 535 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc-cchhee--eccceec
Confidence 00000 11335667888999999999999999999999884 333333 6899999
Q ss_pred EEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 172 SLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 172 sLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
++++.|+|.++ ++++.|+.+.+|.+....
T Consensus 536 slai~~ng~~l------------~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 536 SLAIDPNGPYL------------MSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ceeecCCCceE------------EeecCCceeehhhccchh
Confidence 99999966555 455779999999875433
No 172
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=4.6e-12 Score=132.97 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=125.6
Q ss_pred ccCCCCEEEEEECCCcEEEEECC------CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743 2 YNCKDEHLASISLSGDLILHNLA------SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~------tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~ 75 (633)
|+.+|++|++|+.|..+.+|++. +.+++.....+|...|.|++|+-.++ ++++|..+++|.+.|+++.+. .
T Consensus 64 FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qs--i 140 (609)
T KOG4227|consen 64 FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTVIKHDIETKQS--I 140 (609)
T ss_pred eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcceeEeeeccccee--e
Confidence 78899999999999999999985 34566666666778999999998776 899999999999999998873 2
Q ss_pred EeccCC---CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-ee---eEeeCCCCeEEEEEecC-CCEEEEEEcCCeEE
Q 006743 76 WLKQHS---APTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PS---SCITYEAPFSSLAFIDD-DWILTAGTSNGRVV 147 (633)
Q Consensus 76 ~l~~H~---~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-~v---~~i~h~~~ItsLafSPd-G~~LatGs~DGsV~ 147 (633)
.+..|. +.|+.+..+|-.+.|++.+.++.|.+||.+..+ .. ...........+.|+|. ...|++.+..+-+-
T Consensus 141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 233444 499999999999999999999999999998755 22 22246677889999995 57788888889999
Q ss_pred EEECCCCCCc
Q 006743 148 FYDIRGKPQP 157 (633)
Q Consensus 148 IWDlrs~~k~ 157 (633)
+||.+....+
T Consensus 221 ~~D~R~~~~~ 230 (609)
T KOG4227|consen 221 VFDRRMQARP 230 (609)
T ss_pred ceeeccccch
Confidence 9999976543
No 173
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.7e-11 Score=133.76 Aligned_cols=178 Identities=15% Similarity=0.202 Sum_probs=126.6
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 006743 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (633)
Q Consensus 1 AFSpdG~~LaSgs~D---G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~ 75 (633)
+|+|||++|+.++.+ ..|++||+.+++... +.. ......+++|+|+|+.++++.+.+| .|++||+.++. ..
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~-~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~--~~ 285 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VAS-FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ--LT 285 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-ecc-CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC--eE
Confidence 589999999987643 469999998776543 222 2234446899999996666777666 59999998876 45
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC---eEEEE
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGL-DK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY 149 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~-DG--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG---sV~IW 149 (633)
.+..+......++|+||++.|+.++. ++ .|+++|+.+++.............++|+|||++|+..+.++ .|++|
T Consensus 286 ~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 286 RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVM 365 (433)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence 56666666678999999998887764 33 47888888776554443444555789999999998765443 69999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006743 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~ 187 (633)
|+.++.. ..+. +......+.|+|+|++++....
T Consensus 366 d~~~g~~--~~Lt---~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 366 DLSTGSV--RTLT---PGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred ECCCCCe--EECC---CCCCCCCceECCCCCEEEEEEe
Confidence 9987632 2332 3334567899999988776533
No 174
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=8e-12 Score=123.88 Aligned_cols=148 Identities=16% Similarity=0.285 Sum_probs=108.9
Q ss_pred ccCCCCEEEEEEC----------CCcEEEEECC-CCceeEEEeCCCCCcEEEEEEccCCCeEEEE-EeCCCeEEEEECCC
Q 006743 2 YNCKDEHLASISL----------SGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVT-AGDDGTLHLWDTTG 69 (633)
Q Consensus 2 FSpdG~~LaSgs~----------DG~I~IWDl~-tgk~v~~~~~~~~~~VssLafSpdg~~lLaS-Gs~DGtI~IWDl~t 69 (633)
|+++|++|++-.. -|...||-++ .+..+..+.-.....|.+++|+|+++.++++ |..++.|.+||++.
T Consensus 13 W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~ 92 (194)
T PF08662_consen 13 WQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG 92 (194)
T ss_pred ecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc
Confidence 8999998875433 1335555552 2334455544344569999999999854433 44678999999973
Q ss_pred CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc----
Q 006743 70 RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---- 142 (633)
Q Consensus 70 ~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D---GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~---- 142 (633)
.. +..+ +...++.+.|+|+|++|++++.+ |.|.+||+++.+.+....|.. +..++|+|||++|+++..
T Consensus 93 ~~--i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~ 167 (194)
T PF08662_consen 93 KK--IFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRL 167 (194)
T ss_pred cE--eEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccce
Confidence 32 3433 35678999999999999998754 579999999888887776654 789999999999998875
Q ss_pred --CCeEEEEECCCC
Q 006743 143 --NGRVVFYDIRGK 154 (633)
Q Consensus 143 --DGsV~IWDlrs~ 154 (633)
|..++||+....
T Consensus 168 ~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 168 RVDNGFKIWSFQGR 181 (194)
T ss_pred eccccEEEEEecCe
Confidence 677899998653
No 175
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.42 E-value=1.6e-11 Score=132.54 Aligned_cols=198 Identities=13% Similarity=0.172 Sum_probs=150.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeE---EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAA---ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~---~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l 77 (633)
+|+|.+..|+.....|+++.|+++.+...+ .++.+.+..|.|++|.++|+ +++|..+|.|.||+..+... .+..
T Consensus 207 ~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~-~k~~ 283 (626)
T KOG2106|consen 207 TFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNRI-SKQV 283 (626)
T ss_pred EeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCceE-EeEe
Confidence 488988877777778999999998876543 45556678899999999998 89999999999999987764 3444
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------------------------------------ee
Q 006743 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-----------------------------------------PS 116 (633)
Q Consensus 78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-----------------------------------------~v 116 (633)
..|.+.|.+++...+|.++- |+.|+.|..||-.-.+ .+
T Consensus 284 ~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred eecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence 59999999999998887655 9999999999831000 01
Q ss_pred eEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe-----------
Q 006743 117 SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE----------- 185 (633)
Q Consensus 117 ~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~----------- 185 (633)
..+.|......++.+|+...+++++.|+.|++|+ . . ++..... -..++.|+.|+|.| .++.+
T Consensus 363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~-k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-H-KLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDT 435 (626)
T ss_pred EEEecccceeeEEcCCChhheeeccCcceEEEcc-C-C-ceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEec
Confidence 1123566777899999999999999999999999 2 2 3332222 34678899999988 55432
Q ss_pred ------------------ccCCCCeEEEEeeCCCeEEccCCC
Q 006743 186 ------------------TTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 186 ------------------s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
....++.+++.++.|+.|.||.+.
T Consensus 436 e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 436 ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred ccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 234566777778888888888664
No 176
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=6.2e-12 Score=131.34 Aligned_cols=194 Identities=15% Similarity=0.234 Sum_probs=147.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------- 73 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~------- 73 (633)
||++.-..+|++..|-.|++||-.+ +....++......|.|++|-|.+...|+.|+..| |.||........
T Consensus 105 aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~ 182 (445)
T KOG2139|consen 105 AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMM 182 (445)
T ss_pred eechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccc
Confidence 4666666778899999999999765 7777777656678999999999877788888744 999987422111
Q ss_pred ------eEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743 74 ------VSWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR 145 (633)
Q Consensus 74 ------v~~l~~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGs 145 (633)
+..-.+| .+|+.++|++||..+++++. |..|.|||..++..+... ...+.+.-+.|+|||.+|+++.-|+.
T Consensus 183 s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav 261 (445)
T KOG2139|consen 183 STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV 261 (445)
T ss_pred cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce
Confidence 1222344 78999999999999999885 558999999999888777 45678889999999999999999999
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCe
Q 006743 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDS 202 (633)
Q Consensus 146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~ 202 (633)
.++|.........+.. --.+.|...+|+|+|++|+.. ..++..+.+..-++.
T Consensus 262 frlw~e~q~wt~erw~---lgsgrvqtacWspcGsfLLf~--~sgsp~lysl~f~~~ 313 (445)
T KOG2139|consen 262 FRLWQENQSWTKERWI---LGSGRVQTACWSPCGSFLLFA--CSGSPRLYSLTFDGE 313 (445)
T ss_pred eeeehhcccceeccee---ccCCceeeeeecCCCCEEEEE--EcCCceEEEEeecCC
Confidence 9999765432222222 245699999999999998765 336666666654443
No 177
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=2.8e-11 Score=133.61 Aligned_cols=189 Identities=17% Similarity=0.182 Sum_probs=126.5
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC--CCCCceeE
Q 006743 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--TGRSPKVS 75 (633)
Q Consensus 1 AFSpdG~~LaSgs~D---G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl--~t~~~~v~ 75 (633)
+|+|||+.|+..+.+ ..|++||+.+++.... .. ....+....|+|+|+.++++.+.+|...||.+ .++. ..
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~ 277 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-AN-FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG--LR 277 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ec-CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC--cE
Confidence 589999999887643 3599999988875433 22 22344568999999966667788887666654 4444 45
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeC-CCe--EEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC---eEEEE
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGL-DKK--LYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY 149 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~-DGt--VrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG---sV~IW 149 (633)
.+..+...+....|+|||++|+.++. ++. |+++|+.++...............+|+|||++|+..+.++ .|++|
T Consensus 278 ~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~ 357 (427)
T PRK02889 278 RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQ 357 (427)
T ss_pred ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 56666666778899999998887664 344 4444555555443333333455688999999998776554 69999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006743 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs 198 (633)
|+.++. ...+. .......+.|+|+|++|+......+...+....
T Consensus 358 d~~~g~--~~~lt---~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 358 DLATGQ--VTALT---DTTRDESPSFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred ECCCCC--eEEcc---CCCCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence 998763 22232 223456789999999888775444433333333
No 178
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=1.1e-11 Score=122.93 Aligned_cols=153 Identities=18% Similarity=0.277 Sum_probs=108.5
Q ss_pred EEEccCCCeEEEEEeC---------CCeEEEEECCCCCceeEEecc-CCCCeEEEEEcCCCCEEEEE--eCCCeEEEEeC
Q 006743 43 LDYSRNSRHLLVTAGD---------DGTLHLWDTTGRSPKVSWLKQ-HSAPTAGISFSSDDKIIASV--GLDKKLYTYDP 110 (633)
Q Consensus 43 LafSpdg~~lLaSGs~---------DGtI~IWDl~t~~~~v~~l~~-H~~~VtsLafSPdg~~LaSg--S~DGtVrIWDl 110 (633)
+.|+++|+.+++.... -+...||.++.....+..+.- ..++|.+++|+|+++.|+++ ..++.|.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 7899999866665552 234666666443333444432 34579999999999987655 35679999999
Q ss_pred CCCceeeEeeCCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006743 111 GSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (633)
Q Consensus 111 rtgk~v~~i~h~~~ItsLafSPdG~~LatGs~---DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~ 187 (633)
+ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||.++.+ .+....|. .++.++|+|+|++++++..
T Consensus 91 ~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~----~i~~~~~~-~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 91 K-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK----KISTFEHS-DATDVEWSPDGRYLATATT 163 (194)
T ss_pred c-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE----EeeccccC-cEEEEEEcCCCCEEEEEEe
Confidence 7 55555554 567889999999999999875 4679999999662 23333343 4789999999999988732
Q ss_pred CCCCeEEEEeeCCCeEEccCC
Q 006743 188 CKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 188 ~sd~~lLlSgs~Dg~IkIWDl 208 (633)
.. -...|+.++||+.
T Consensus 164 ~~------r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 164 SP------RLRVDNGFKIWSF 178 (194)
T ss_pred cc------ceeccccEEEEEe
Confidence 11 1235889999976
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=2.1e-12 Score=140.20 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=125.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCC---------C
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTG---------R 70 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd-g~~lLaSGs~DGtI~IWDl~t---------~ 70 (633)
+|+.||.+|++|+.|-.+.|||.-..+.+..+..+|...|.+++|-|. ++.++++|+.|..|++||+.. .
T Consensus 57 eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~ 136 (758)
T KOG1310|consen 57 EWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM 136 (758)
T ss_pred eecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence 589999999999999999999999999999998889899999999985 344889999999999999974 2
Q ss_pred CceeEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcee-------e----EeeCCCCeEEEEEecC-CCEE
Q 006743 71 SPKVSWLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPS-------S----CITYEAPFSSLAFIDD-DWIL 137 (633)
Q Consensus 71 ~~~v~~l~~H~~~VtsLafSPdg-~~LaSgS~DGtVrIWDlrtgk~v-------~----~i~h~~~ItsLafSPd-G~~L 137 (633)
+....++..|...|..|+-.|++ +.|.++++||+|+-||+|..... . ....--...|+.++|. ..+|
T Consensus 137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~l 216 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYL 216 (758)
T ss_pred cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceE
Confidence 23356677899999999999966 89999999999999999863211 0 0112234678999994 6889
Q ss_pred EEEEcCCeEEEEECC
Q 006743 138 TAGTSNGRVVFYDIR 152 (633)
Q Consensus 138 atGs~DGsV~IWDlr 152 (633)
++|+.|-..++||.|
T Consensus 217 aVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 217 AVGGSDPFARLYDRR 231 (758)
T ss_pred EecCCCchhhhhhhh
Confidence 999999999999965
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.40 E-value=2.7e-12 Score=139.02 Aligned_cols=189 Identities=15% Similarity=0.243 Sum_probs=144.1
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEE
Q 006743 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG 86 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vts 86 (633)
+.++.++.||.+.|.+ +.++....+.. |...+.+-.|+++|. -|+++++||.|+||.-.+.- ..++.....+|+|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~A-H~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGML--RStl~Q~~~~v~c 150 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISA-HAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGML--RSTVVQNEESIRC 150 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhh-hhhhhhhcccCCCCc-eeeeecCCceEEEEeccchH--HHHHhhcCceeEE
Confidence 4788899999999998 45666666665 666677789999998 79999999999999987654 3456667789999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCC-CceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC
Q 006743 87 ISFSSDDKIIASVGLDKKLYTYDPGS-RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS 165 (633)
Q Consensus 87 LafSPdg~~LaSgS~DGtVrIWDlrt-gk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~ 165 (633)
++|.|+.+.++.|..+. +.|=-+.. .++++...|.+-|.++.|++..+.|++|++|-..+|||.... ..+....
T Consensus 151 ~~W~p~S~~vl~c~g~h-~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~----~Lf~S~~ 225 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGGH-ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA----NLFTSAA 225 (737)
T ss_pred EEECCCCCceEEecCCe-EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc----ccccCCh
Confidence 99999776666555443 45544443 355666689999999999999999999999999999998765 3455557
Q ss_pred CCCCeeEEEEccCCCeEE-----------------EeccCCCCeEEEEeeCCCeEEc
Q 006743 166 SSEAVSSLCWQRAKPVFI-----------------DETTCKAETALLGGAVGDSILM 205 (633)
Q Consensus 166 H~~~VtsLafsPdg~~La-----------------s~s~~sd~~lLlSgs~Dg~IkI 205 (633)
|..+|++++|.|+..|++ .-+|+.|+..+.++...|.+.+
T Consensus 226 ~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 226 EEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred hccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 899999999999855544 1235566666666666665544
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.40 E-value=2.5e-12 Score=141.71 Aligned_cols=169 Identities=16% Similarity=0.329 Sum_probs=135.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
||-|||..|+.+. +..+.|||.++|..+..+++ |++.|.||+|+.+|. .|++|+.|+.|.||.-.-.. ..-..|
T Consensus 19 afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG---~LkYSH 92 (1081)
T KOG1538|consen 19 AFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEG---ILKYSH 92 (1081)
T ss_pred EECCCCceEEEec-CCEEEEEeCCCccccccccc-ccceEEEEEEccCCc-eeccCCCceeEEEecccccc---eeeecc
Confidence 5889999888775 55899999999999999997 778899999999998 89999999999999875443 223579
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~ 160 (633)
+..|.|+.|+|-...+++++-.. .-+|...... +........|.+++|..||.+++.|..||+|.|-+.... ..+.+
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE-ek~~I 169 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE-EKVKI 169 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhh-ccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC-cceEE
Confidence 99999999999888889888653 6778766433 223334567899999999999999999999999865443 33333
Q ss_pred EeecCCCCCeeEEEEccC
Q 006743 161 LRACSSSEAVSSLCWQRA 178 (633)
Q Consensus 161 l~~~~H~~~VtsLafsPd 178 (633)
-+--+...+|.+++|+|.
T Consensus 170 ~Rpgg~Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPS 187 (1081)
T ss_pred eCCCCCCCCceEEEecCC
Confidence 333467789999999985
No 182
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=5.7e-11 Score=131.27 Aligned_cols=178 Identities=13% Similarity=0.141 Sum_probs=123.4
Q ss_pred CccCCCCEEEEEEC---CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 006743 1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (633)
Q Consensus 1 AFSpdG~~LaSgs~---DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~ 75 (633)
+|+|||+.|+..+. +..|++||+.+++...... ....+..++|+|+|+.++++...+| .|++||+.++. ..
T Consensus 205 ~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~--~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~--~~ 280 (429)
T PRK03629 205 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IR 280 (429)
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC--CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC--EE
Confidence 58999999986542 3579999998876433221 1222345799999996666656565 58899998776 34
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY 149 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~DG---tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D---GsV~IW 149 (633)
.+..+...+....|+||++.|+.++.++ .|+++|+.+++............+.+|+|||++|+..+.+ ..|++|
T Consensus 281 ~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 281 QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence 4555556788999999999988777643 5666688777655444444556788999999999876543 358899
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006743 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~ 187 (633)
|+.++. ...+.. ........|+|||++|+..+.
T Consensus 361 dl~~g~--~~~Lt~---~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 361 DLATGG--VQVLTD---TFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred ECCCCC--eEEeCC---CCCCCCceECCCCCEEEEEEc
Confidence 998763 233331 122456789999888877643
No 183
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.39 E-value=2.3e-11 Score=137.54 Aligned_cols=186 Identities=18% Similarity=0.229 Sum_probs=147.7
Q ss_pred CCCCEEEEEECCCcEEEEECCCCc-e----eEEEeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743 4 CKDEHLASISLSGDLILHNLASGA-K----AAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk-~----v~~~~~~~~~~VssLafSpdg-~~lLaSGs~DGtI~IWDl~t~~~~v~~l 77 (633)
+=|.+++++..++.|.||+..+.+ . +..++. ..+.|+++ ++|.- =+.++.|+.+|.++||++++++. +..+
T Consensus 122 ~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~-~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~-v~~f 198 (910)
T KOG1539|consen 122 PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKV-EGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKV-VYTF 198 (910)
T ss_pred eecceEEEEEccCcEEEEEeccccccccccceeeec-cCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcE-EEEe
Confidence 347889999999999999987741 1 122222 22336654 45542 23689999999999999999984 7889
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC-CCeEEEEEecCCCE-EEEEEcCCeEEEEECCCCC
Q 006743 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE-APFSSLAFIDDDWI-LTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~-~~ItsLafSPdG~~-LatGs~DGsV~IWDlrs~~ 155 (633)
.++...|+++.-+|--..++.|..+|+|.+++++.++.+..+.+. +.|+.+.|..||.. +++|+..|.+.+||++..+
T Consensus 199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence 999999999999998889999999999999999999999999886 99999999999975 4567777999999999875
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcc
Q 006743 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP 206 (633)
Q Consensus 156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIW 206 (633)
....+.+ .|.+.|....|.+ ++.++++.+.|+.+++|
T Consensus 279 l~~v~~n--ah~~sv~~~~fl~------------~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 279 LINVTRN--AHYGSVTGATFLP------------GEPVLVTAGADNSLKVW 315 (910)
T ss_pred eeeeeec--cccCCcccceecC------------CCceEeeccCCCceeEE
Confidence 4433333 7889999999988 45556666667777766
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.38 E-value=4.8e-12 Score=138.97 Aligned_cols=198 Identities=22% Similarity=0.272 Sum_probs=152.2
Q ss_pred ccC-CCCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 006743 2 YNC-KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73 (633)
Q Consensus 2 FSp-dG~~LaSgs~DG~I~IWDl~tgk-------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~ 73 (633)
|+| |.+.||+++.||.|++|.+..+. ....+.. |.+.|+.+.|+|-...+|++++.|-+|+|||+.+.+.
T Consensus 635 WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~- 712 (1012)
T KOG1445|consen 635 WDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL- 712 (1012)
T ss_pred cCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-
Confidence 555 45789999999999999986543 3344554 7788999999998777999999999999999998875
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcCC----eE
Q 006743 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNG----RV 146 (633)
Q Consensus 74 v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~DG----sV 146 (633)
...+.+|.+.|.+++|+|+|+.+++.+.||+|++|..+++..-..-+ .+..-..+.|.-||++|++.+.|. .|
T Consensus 713 ~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv 792 (1012)
T KOG1445|consen 713 YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQV 792 (1012)
T ss_pred hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhh
Confidence 45688999999999999999999999999999999999865432221 334455678888999999888764 58
Q ss_pred EEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 147 VFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 147 ~IWDlrs~~-k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
.+||..+.. .++ .+..+...| ..|+-.++.+.+.++++|-.|..|.+|++....+
T Consensus 793 ~~Y~Aq~l~~~pl----------~t~~lDvap--s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 793 QMYDAQTLDLRPL----------YTQVLDVAP--SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred hhhhhhhccCCcc----------eeeeecccC--ccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 899887642 111 122333333 2344445667888999999999999999875443
No 185
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=1.1e-10 Score=126.98 Aligned_cols=181 Identities=18% Similarity=0.218 Sum_probs=129.4
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 006743 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (633)
Q Consensus 1 AFSpdG~~LaSgs~D---G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~ 75 (633)
+|+|||++|+.+..+ ..|++||+.+++...... ....+.+++|+|+++.++++...++ .|++||+.++. ..
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~--~~ 271 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ--LT 271 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC--EE
Confidence 489999999887654 479999998876543322 2344556899999986666666555 58888988765 34
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC---eEEEE
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY 149 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~DG---tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG---sV~IW 149 (633)
.+..+........|+|++++|+.++..+ .|++||+.+++......+...+..+.|+|+|++|+.+..++ .|++|
T Consensus 272 ~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 272 RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM 351 (417)
T ss_pred ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence 4555655566789999999887766532 68889998877655555566778899999999999888776 79999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd 190 (633)
|+.+.. ...+. .........|+|++++|+......+
T Consensus 352 d~~~~~--~~~l~---~~~~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 352 DLDGGG--ERVLT---DTGLDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred eCCCCC--eEEcc---CCCCCCCceECCCCCEEEEEEeCCC
Confidence 998752 23333 1223456789999888876644333
No 186
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=8.8e-11 Score=129.74 Aligned_cols=176 Identities=14% Similarity=0.167 Sum_probs=128.4
Q ss_pred CccCCCCEEEEEEC---CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006743 1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (633)
Q Consensus 1 AFSpdG~~LaSgs~---DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--I~IWDl~t~~~~v~ 75 (633)
+|+|||+.|+..+. +..|++||+.+++.. .+.. ....+...+|+|+|+.++++.+.++. |++||+.++. ..
T Consensus 208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~ 283 (435)
T PRK05137 208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGN-FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--TT 283 (435)
T ss_pred EECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eeec-CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc--eE
Confidence 48999999987753 468999999887654 3332 33455678999999976777777765 7777888776 45
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLD-K--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY 149 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~D-G--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D---GsV~IW 149 (633)
.+..+.......+|+||++.|+.++.. + .|++||+..+...........+....|+|||++|+....+ ..|.+|
T Consensus 284 ~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 284 RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM 363 (435)
T ss_pred EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence 566676777889999999998877643 3 6899998877665554455667778999999999876643 368889
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
|+.+.. ...+. ....+..+.|+|+|+.|+..
T Consensus 364 d~~~~~--~~~lt---~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 364 KPDGSG--ERILT---SGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred ECCCCc--eEecc---CCCCCCCCeECCCCCEEEEE
Confidence 986543 23333 22347788999998887665
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.37 E-value=9.1e-12 Score=135.01 Aligned_cols=177 Identities=17% Similarity=0.225 Sum_probs=135.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|++||.-|++++.||.|+||.- +|-....+. .....|+|++|.|+.++++++.+ +.+.|=-+.-... +..++.|.
T Consensus 112 W~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~-Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i~WkAHD 186 (737)
T KOG1524|consen 112 WSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV-QNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK-IIRWRAHD 186 (737)
T ss_pred cCCCCceeeeecCCceEEEEec-cchHHHHHh-hcCceeEEEEECCCCCceEEecC--CeEEEeecccccc-eeEEeccC
Confidence 8999999999999999999984 554333332 35678999999999987776554 5566666655443 56679999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL 161 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l 161 (633)
+-|.++.|++..++|++|++|-..++||-........-.|+.+|++++|+|+ +.++.++. .++++ ..
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~~-------- 253 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---SS-------- 253 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeee-eeeee---cC--------
Confidence 9999999999999999999999999999876555555579999999999999 55555554 23331 11
Q ss_pred eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006743 162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD 201 (633)
Q Consensus 162 ~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg 201 (633)
...+.|..++|++||..++++ ...+.+++.-..+.
T Consensus 254 ---p~~GSifnlsWS~DGTQ~a~g--t~~G~v~~A~~ieq 288 (737)
T KOG1524|consen 254 ---PRVGSIFNLSWSADGTQATCG--TSTGQLIVAYAIEQ 288 (737)
T ss_pred ---CCccceEEEEEcCCCceeecc--ccCceEEEeeeehh
Confidence 245789999999999999887 44666666655444
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.37 E-value=1.2e-11 Score=126.15 Aligned_cols=181 Identities=13% Similarity=0.271 Sum_probs=137.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCce--eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC--
Q 006743 5 KDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-- 80 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~--v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H-- 80 (633)
+-++|.+.+-|-+..|||++++.. +++-...|...|.+|+|...+...|++.+.||.|+++|++..+........-
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~ 241 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP 241 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence 346888999999999999998733 3332234778889999999888899999999999999998776433333322
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCC-eEEEEeCCCC-ceeeEe-eCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCC
Q 006743 81 SAPTAGISFSS-DDKIIASVGLDK-KLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 81 ~~~VtsLafSP-dg~~LaSgS~DG-tVrIWDlrtg-k~v~~i-~h~~~ItsLafSPd-G~~LatGs~DGsV~IWDlrs~~ 155 (633)
..+...++|++ |.+++++-..|. .|.|.|+|.. .++..+ .|.+.|+.++|.|. ...|.+++.|..+.+||+....
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 46789999999 888999877765 7999999974 344444 79999999999996 5789999999999999998643
Q ss_pred C--ceEEEeecCCCCCeeEEEEcc-CCCeEEEe
Q 006743 156 Q--PLTVLRACSSSEAVSSLCWQR-AKPVFIDE 185 (633)
Q Consensus 156 k--~v~~l~~~~H~~~VtsLafsP-dg~~Las~ 185 (633)
. ....+-.+...+.|..+.|++ ...+++.|
T Consensus 322 ~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 322 RENGEDPILAYTAGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred ccCCCCchhhhhccceeeeeeecccCCCEEEEE
Confidence 2 111112223568899999996 34566555
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.37 E-value=1.6e-10 Score=122.29 Aligned_cols=196 Identities=9% Similarity=0.028 Sum_probs=128.1
Q ss_pred CccCCCCEEEEEE-CCCcEEEEECC-CCce--eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---e
Q 006743 1 MYNCKDEHLASIS-LSGDLILHNLA-SGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---K 73 (633)
Q Consensus 1 AFSpdG~~LaSgs-~DG~I~IWDl~-tgk~--v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~---~ 73 (633)
+++|++++|++++ .++.|.+|++. +++. +.... .......++|+|+++.++++...++.|.+|++..... .
T Consensus 41 ~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 41 VISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred EECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 4789999987765 57889999986 3332 22222 2223456999999985555555689999999964321 1
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceee-------EeeCCCCeEEEEEecCCCEEEEEEc-CC
Q 006743 74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSS-------CITYEAPFSSLAFIDDDWILTAGTS-NG 144 (633)
Q Consensus 74 v~~l~~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrtgk~v~-------~i~h~~~ItsLafSPdG~~LatGs~-DG 144 (633)
+..+ .+.....+++++|+++++++++ .++.|.+||+.+...+. ..........++|+|+|+++++++. ++
T Consensus 119 ~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~ 197 (330)
T PRK11028 119 IQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNS 197 (330)
T ss_pred eeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCC
Confidence 2222 2334578889999998886555 56899999998633221 1223455778999999999988876 89
Q ss_pred eEEEEECCCCCCc---eEEEeec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 145 RVVFYDIRGKPQP---LTVLRAC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 145 sV~IWDlrs~~k~---v~~l~~~----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
.|.+||++..... +..+... .+......+.|+|++++++++ ...++.|.+|++..
T Consensus 198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-----------~~~~~~I~v~~i~~ 259 (330)
T PRK11028 198 SVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-----------DRTASLISVFSVSE 259 (330)
T ss_pred EEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-----------cCCCCeEEEEEEeC
Confidence 9999999742111 2222211 112233468888987766554 23467888888754
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=4.4e-11 Score=132.04 Aligned_cols=171 Identities=19% Similarity=0.219 Sum_probs=115.7
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE--ECCCCCce
Q 006743 1 MYNCKDEHLASISLS---GDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRSPK 73 (633)
Q Consensus 1 AFSpdG~~LaSgs~D---G~I~IWDl~tgk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IW--Dl~t~~~~ 73 (633)
+|+|||++|+.++.+ ..|++||+.+++... .+.+ ....++|+|+|+.++++...+|.+.|| |+.++.
T Consensus 210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-- 283 (429)
T PRK01742 210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG----HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-- 283 (429)
T ss_pred eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC----ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC--
Confidence 589999999987654 369999998876432 2322 223579999998555555678876555 665555
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-CceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743 74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGS-RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (633)
Q Consensus 74 v~~l~~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrt-gk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl 151 (633)
...+..+...+...+|+||++.|+.++ .++...||++.. +.....+.+.. .++.|+|||++|+..+.++ +.+||+
T Consensus 284 ~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl 360 (429)
T PRK01742 284 PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDL 360 (429)
T ss_pred eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEEC
Confidence 455667777888999999999877665 567777777643 22223334433 4678999999999888765 566999
Q ss_pred CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 152 rs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
.++.. ..+.. . .....+.|+|+|++|+..
T Consensus 361 ~~g~~--~~lt~-~--~~~~~~~~sPdG~~i~~~ 389 (429)
T PRK01742 361 TSGST--EVLSS-T--FLDESPSISPNGIMIIYS 389 (429)
T ss_pred CCCCe--EEecC-C--CCCCCceECCCCCEEEEE
Confidence 87642 22221 1 123567899987776665
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.36 E-value=6.6e-11 Score=125.25 Aligned_cols=195 Identities=10% Similarity=0.079 Sum_probs=129.9
Q ss_pred CccCCCCEEEEEEC-CCcEEEEECCC-Cc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-
Q 006743 1 MYNCKDEHLASISL-SGDLILHNLAS-GA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV- 74 (633)
Q Consensus 1 AFSpdG~~LaSgs~-DG~I~IWDl~t-gk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v- 74 (633)
+|+|+|++|++++. ++.|.+|++.+ +. .+..+. .......++++|+++.++++...++.|.+||+.+.....
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 47899999988764 78999999964 32 222222 223356688999998666777778999999997633111
Q ss_pred -----EEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCC--Cce--eeEee-C------CCCeEEEEEecCCCEE
Q 006743 75 -----SWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGS--RRP--SSCIT-Y------EAPFSSLAFIDDDWIL 137 (633)
Q Consensus 75 -----~~l~~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlrt--gk~--v~~i~-h------~~~ItsLafSPdG~~L 137 (633)
.... .......++|+|++++++++.. ++.|.+||+.. ++. +..+. . ......+.++|+|+++
T Consensus 164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 1111 2344678999999999988876 89999999973 332 22221 1 1223468899999999
Q ss_pred EEEEc-CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 138 TAGTS-NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 138 atGs~-DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
+++.. ++.|.+|++..............-......+.|+|+|++|++. ...++.|.+|++.
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va-----------~~~~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA-----------GQKSHHISVYEID 304 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE-----------EccCCcEEEEEEc
Confidence 99865 7899999997543333333321112345678898877666543 3347788888664
No 192
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.35 E-value=6.7e-12 Score=129.78 Aligned_cols=144 Identities=10% Similarity=0.154 Sum_probs=119.1
Q ss_pred EEEEEECCCcEEEEECCCCc---eeEEEeCC-CCCcEEEEEEccC---CCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 8 HLASISLSGDLILHNLASGA---KAAELKDP-NEQVLRVLDYSRN---SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 8 ~LaSgs~DG~I~IWDl~tgk---~v~~~~~~-~~~~VssLafSpd---g~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
.+++++ .+.+.||+..... .++.+... +.+....++|+-+ ++-++|+|+.-|.|+|.|+...+. ...+.+|
T Consensus 57 vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-~~~~~gh 134 (385)
T KOG1034|consen 57 VFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-SKNYRGH 134 (385)
T ss_pred eEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-ccceecc
Confidence 444444 4578888876433 33444433 4556666788754 344899999999999999988875 6778999
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 81 ~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
...|+.+.+.| +.+++++++.|..||+||+++..++..+ +|.+.|.++.|+++|.+|++++.|..|.+|++..
T Consensus 135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 99999999999 7789999999999999999999999988 4899999999999999999999999999999983
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.4e-11 Score=141.58 Aligned_cols=194 Identities=12% Similarity=0.215 Sum_probs=142.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEecc
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQ 79 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--~~v~~l~~ 79 (633)
|.....+|+++|.-..|+|||......+..+.......++++.-+-.+.++|++|..||.|++||.+... ..+...+.
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence 4444556666666889999999888888887766667777766554444599999999999999996544 35778889
Q ss_pred CCCC--eEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEe---e---CCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743 80 HSAP--TAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCI---T---YEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (633)
Q Consensus 80 H~~~--VtsLafSPdg~-~LaSgS~DGtVrIWDlrtgk~v~~i---~---h~~~ItsLafSPdG~~LatGs~DGsV~IWD 150 (633)
|+.. |..+.+.+.|- .|++|+.||.|++||+|.......+ . .++..+++..+++..+||+|+. +.|+||+
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 9988 99999998655 4999999999999999984322222 2 2446999999999999999998 9999999
Q ss_pred CCCCCCceEEEe-ec--CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 151 IRGKPQPLTVLR-AC--SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 151 lrs~~k~v~~l~-~~--~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
+.....-..... .+ ...+.+.|++|+|.... ++.|..|..|.||-.
T Consensus 1332 ~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~l------------lAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1332 LSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLL------------LAAGSADSTVSIYSC 1380 (1387)
T ss_pred cChhhhcccccCcccccCcCCCcceeeecchhHh------------hhhccCCceEEEeec
Confidence 986432111111 00 23467899999995444 444466788888743
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=8.4e-12 Score=129.60 Aligned_cols=148 Identities=24% Similarity=0.348 Sum_probs=123.1
Q ss_pred eEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeeEee---CC-CC
Q 006743 51 HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCIT---YE-AP 124 (633)
Q Consensus 51 ~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlrtgk~v~~i~---h~-~~ 124 (633)
..++++...|.|++||..+++ .+..++++...++.++|.. .+..+.+|+.||+|++||+|.......+. +. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 368889999999999999866 4678899999999999976 57789999999999999999876554442 32 46
Q ss_pred eEEEEEecCCCEEEEEEc----CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCC
Q 006743 125 FSSLAFIDDDWILTAGTS----NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVG 200 (633)
Q Consensus 125 ItsLafSPdG~~LatGs~----DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~D 200 (633)
..|++.+-.++++++|.. |-.|.+||+|+.++++..+.. .|..-|++++|+|+ +-.+|++|+.|
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-SH~DDVT~lrFHP~-----------~pnlLlSGSvD 187 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-SHNDDVTQLRFHPS-----------DPNLLLSGSVD 187 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh-hccCcceeEEecCC-----------CCCeEEeeccc
Confidence 778887777888888864 667999999998776666553 69999999999996 67789999999
Q ss_pred CeEEccCCCCC
Q 006743 201 DSILMPDPLPS 211 (633)
Q Consensus 201 g~IkIWDlr~~ 211 (633)
|.|.+||+...
T Consensus 188 GLvnlfD~~~d 198 (376)
T KOG1188|consen 188 GLVNLFDTKKD 198 (376)
T ss_pred ceEEeeecCCC
Confidence 99999999754
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.34 E-value=1.9e-11 Score=126.11 Aligned_cols=194 Identities=14% Similarity=0.222 Sum_probs=148.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC-CCCC-ceeE
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TGRS-PKVS 75 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk---~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl-~t~~-~~v~ 75 (633)
||++|+..+|++.....|.||.....+ ...++.. |...|++|+|+|..+ .|++|+.|..-+||.. .+++ .+..
T Consensus 17 Awn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~~~~Wkptl 94 (361)
T KOG1523|consen 17 AWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPSGGTWKPTL 94 (361)
T ss_pred eecCCCceEEeccCCceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCC-ceeEccCCCCccccccCCCCeeccce
Confidence 689999999999999999999986654 5566664 778889999999987 7999999999999999 4333 2245
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-----EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-----CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~-----~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWD 150 (633)
.+..++..++++.|+|..+.|++|+.-+.|.||-++....-- ...+...|.+++|+|++-.|++|+.|+.++||.
T Consensus 95 vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence 567899999999999999999999999999888876544321 124678899999999999999999999999985
Q ss_pred CC-----CCC--------CceEEE-eec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 151 IR-----GKP--------QPLTVL-RAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 151 lr-----s~~--------k~v~~l-~~~-~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
.- ... .|+-.+ ..+ ...+.|..+.|+|+|..|+-. +.|..+.+-|.
T Consensus 175 ayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv------------~Hds~v~~~da 235 (361)
T KOG1523|consen 175 AYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV------------GHDSTVSFVDA 235 (361)
T ss_pred EeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe------------cCCCceEEeec
Confidence 42 111 111111 111 456889999999987776654 34666666554
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=1.3e-10 Score=121.94 Aligned_cols=183 Identities=13% Similarity=0.211 Sum_probs=137.7
Q ss_pred EEEEEECC--CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec---cCCC
Q 006743 8 HLASISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK---QHSA 82 (633)
Q Consensus 8 ~LaSgs~D--G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~---~H~~ 82 (633)
++|..+.+ ..+++++.+.+..++++.- ...|-+|.++.+ .|+.+-.+. |+|||+.+.+. ++++. .+..
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f--pt~IL~VrmNr~---RLvV~Lee~-IyIydI~~Mkl-LhTI~t~~~n~~ 130 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEIFF--PTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKL-LHTIETTPPNPK 130 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEEec--CCceEEEEEccc---eEEEEEccc-EEEEeccccee-ehhhhccCCCcc
Confidence 34444433 4589999988888888763 455677888865 466666544 99999998874 34433 3556
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCCCCce
Q 006743 83 PTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQPL 158 (633)
Q Consensus 83 ~VtsLafSPdg~~LaSgS--~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGs-V~IWDlrs~~k~v 158 (633)
.+.++.++..+.+++.-+ ..|.|.+||..+-+.+..+ .|++.+.|++|+++|.+||+++..|+ |+||++.++.+..
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~ 210 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY 210 (391)
T ss_pred ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence 677777777777888643 4679999999999988888 69999999999999999999999998 8999999885443
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
.++.-.....|.+++|+|++++|++. +.-++|.||.+..
T Consensus 211 -eFRRG~~~~~IySL~Fs~ds~~L~~s------------S~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 211 -EFRRGTYPVSIYSLSFSPDSQFLAAS------------SNTETVHIFKLEK 249 (391)
T ss_pred -eeeCCceeeEEEEEEECCCCCeEEEe------------cCCCeEEEEEecc
Confidence 34332335678999999977666554 5578888887754
No 197
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.33 E-value=2.5e-11 Score=134.98 Aligned_cols=196 Identities=13% Similarity=0.162 Sum_probs=146.7
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce--eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--------
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-------- 71 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~--v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-------- 71 (633)
|+++++.+++-+..|..++|..++... ...+..+|.+.|++|+|.|.|+ +|++.+.|.+-+|+-.-+.+
T Consensus 324 w~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 324 WSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred EcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecc
Confidence 889999999999999999998433221 1122334777789999999988 77777777666554211000
Q ss_pred -------------------------ce-----------------------------------------------------
Q 006743 72 -------------------------PK----------------------------------------------------- 73 (633)
Q Consensus 72 -------------------------~~----------------------------------------------------- 73 (633)
.+
T Consensus 403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G 482 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG 482 (764)
T ss_pred cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence 00
Q ss_pred -----------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCC
Q 006743 74 -----------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDK-----KLYTYDPGSR 113 (633)
Q Consensus 74 -----------------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DG-----tVrIWDlrtg 113 (633)
++.+.+|...|++++.+|+++++|+++... .|++|+..+.
T Consensus 483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W 562 (764)
T KOG1063|consen 483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW 562 (764)
T ss_pred cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch
Confidence 123678999999999999999999998654 6999999988
Q ss_pred ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE-EeecCCCCCeeEEEEccCCCeEEEeccCCCC
Q 006743 114 RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV-LRACSSSEAVSSLCWQRAKPVFIDETTCKAE 191 (633)
Q Consensus 114 k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~-l~~~~H~~~VtsLafsPdg~~Las~s~~sd~ 191 (633)
..+..+ .|.-.|+.++|+|||++|++.+.|+++.+|........... -....|..-|....|+| ++
T Consensus 563 ~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p------------de 630 (764)
T KOG1063|consen 563 LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP------------DE 630 (764)
T ss_pred hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc------------cc
Confidence 777644 79999999999999999999999999999988654322111 11236777778888777 56
Q ss_pred eEEEEeeCCCeEEccCCCC
Q 006743 192 TALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 192 ~lLlSgs~Dg~IkIWDlr~ 210 (633)
.++++++.|++|++|....
T Consensus 631 ~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 631 KYFATASRDKKVKVWEEPD 649 (764)
T ss_pred ceeEEecCCceEEEEeccC
Confidence 6677788999999997654
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=9.4e-11 Score=135.05 Aligned_cols=197 Identities=17% Similarity=0.251 Sum_probs=143.6
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCC--CCcEEEEEE-ccCCCeEEEEEeCCCeEEEEECC-C---CCcee
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPN--EQVLRVLDY-SRNSRHLLVTAGDDGTLHLWDTT-G---RSPKV 74 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~--~~~VssLaf-Spdg~~lLaSGs~DGtI~IWDl~-t---~~~~v 74 (633)
|+|-...++++...-.|+|||.+.++....|..+. ...|+.+++ +.++..++++|+.||.|+||+-- . ....+
T Consensus 1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred ecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE
Confidence 56667788888877899999999999888776533 456777776 44555689999999999999752 2 11122
Q ss_pred EEecc-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCeEEEEEec-CCCEEEEEEcCC
Q 006743 75 SWLKQ-------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFID-DDWILTAGTSNG 144 (633)
Q Consensus 75 ~~l~~-------H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~ItsLafSP-dG~~LatGs~DG 144 (633)
..+.+ -.+.-.-++|.....+|+++++-..|+|||......+.-+. ....|+++.-+- .|++|++|..||
T Consensus 1152 Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDG 1231 (1387)
T KOG1517|consen 1152 TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADG 1231 (1387)
T ss_pred EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCC
Confidence 22221 11112446888866677777778899999999888777764 344566665443 479999999999
Q ss_pred eEEEEECCCCCC--ceEEEeecCCCCC--eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743 145 RVVFYDIRGKPQ--PLTVLRACSSSEA--VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (633)
Q Consensus 145 sV~IWDlrs~~k--~v~~l~~~~H~~~--VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~ 211 (633)
.|++||.|.... .+...+ .|... |..+.+.++| -.-+++++.||.|++||+|..
T Consensus 1232 svRvyD~R~a~~ds~v~~~R--~h~~~~~Iv~~slq~~G-----------~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1232 SVRVYDRRMAPPDSLVCVYR--EHNDVEPIVHLSLQRQG-----------LGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ceEEeecccCCccccceeec--ccCCcccceeEEeecCC-----------CcceeeeccCCeEEEEecccC
Confidence 999999997543 556666 56666 9999998853 225788899999999999985
No 199
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.29 E-value=7.5e-11 Score=133.06 Aligned_cols=199 Identities=18% Similarity=0.180 Sum_probs=143.6
Q ss_pred ccCCC-CEEEEEECCCcEEEEECCCCce-----eEEEeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCcee
Q 006743 2 YNCKD-EHLASISLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPKV 74 (633)
Q Consensus 2 FSpdG-~~LaSgs~DG~I~IWDl~tgk~-----v~~~~~~~~~~VssLafSpdg~-~lLaSGs~DGtI~IWDl~t~~~~v 74 (633)
|+|.. .+|+.|+.+|.|.+||+..+.. +......|...|..+.|..+.. +-|++++.||.|+.|+++.-..++
T Consensus 250 f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~ 329 (555)
T KOG1587|consen 250 FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV 329 (555)
T ss_pred eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccch
Confidence 45544 5777788999999999987654 2334455788888899976532 248888999999999986443221
Q ss_pred EEe----c-------cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeC---CCCc-----ee-eEeeCCCCeEEEEEecC
Q 006743 75 SWL----K-------QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDP---GSRR-----PS-SCITYEAPFSSLAFIDD 133 (633)
Q Consensus 75 ~~l----~-------~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDl---rtgk-----~v-~~i~h~~~ItsLafSPd 133 (633)
... . .....+++++|.+ +...|+.|+++|.|..-+- +... .. ....|.++|+++.++|-
T Consensus 330 e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF 409 (555)
T KOG1587|consen 330 EGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF 409 (555)
T ss_pred hhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCC
Confidence 110 1 1234689999999 8899999999998877433 3222 11 22358899999999998
Q ss_pred CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 134 DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 134 G~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
+..++..+.|.+|+||.......|+..+. .+...|++++|+|. .-.+++++..||.+.+||++....
T Consensus 410 ~~k~fls~gDW~vriWs~~~~~~Pl~~~~--~~~~~v~~vaWSpt-----------rpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 410 YPKNFLSVGDWTVRIWSEDVIASPLLSLD--SSPDYVTDVAWSPT-----------RPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred ccceeeeeccceeEeccccCCCCcchhhh--hccceeeeeEEcCc-----------CceEEEEEcCCCceehhhhhcccc
Confidence 77666666699999999884445555554 56777999999995 334566677899999999986544
No 200
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=7e-11 Score=124.22 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=135.7
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC------CCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 006743 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT------GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY 108 (633)
Q Consensus 35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~------t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIW 108 (633)
.|.+.|.+|.|+.+++ +|++|++|..++||.+. ..+++...-..|...|.|++|+-....+++|..+++|...
T Consensus 54 ~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 3677899999999987 99999999999999984 2333222223455899999999988999999999999999
Q ss_pred eCCCCceeeEeeCCC---CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 109 DPGSRRPSSCITYEA---PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 109 Dlrtgk~v~~i~h~~---~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
|+.+.+.+.++.|.. .|+.+..+|..+++++.+.+|.|.+||.+....+...+...........+.|+|..+
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P----- 207 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP----- 207 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc-----
Confidence 999999998887655 899999999999999999999999999998766666666555667788999999643
Q ss_pred ccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 186 TTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 186 s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
.++++.+..+-+.+||.|+..
T Consensus 208 ------~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 208 ------ALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred ------eeEEeccccCCCCceeecccc
Confidence 345555667788999998643
No 201
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.28 E-value=1.7e-11 Score=123.71 Aligned_cols=142 Identities=21% Similarity=0.257 Sum_probs=113.3
Q ss_pred EEEEEeCCCeEEEEECCCCCce---------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--cee--eE
Q 006743 52 LLVTAGDDGTLHLWDTTGRSPK---------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPS--SC 118 (633)
Q Consensus 52 lLaSGs~DGtI~IWDl~t~~~~---------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg--k~v--~~ 118 (633)
++++|-++|.|.+||+..+... +.-...|..+|.++.+.+....=++|+.+..+..|.+... .+. ..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 5677888999999999876311 2334579999999999986666678888888999988643 221 12
Q ss_pred e-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 006743 119 I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG 197 (633)
Q Consensus 119 i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSg 197 (633)
+ -....|..+.+.||++++|+++.|++|+||..++. +++.++. .|...|.+++|+|+ ..+++.+
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLk--yHsagvn~vAfspd------------~~lmAaa 311 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLK--YHSAGVNAVAFSPD------------CELMAAA 311 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-Cchhhhh--hhhcceeEEEeCCC------------Cchhhhc
Confidence 2 24456888999999999999999999999999998 6778888 79999999999995 4455666
Q ss_pred eCCCeEEccCC
Q 006743 198 AVGDSILMPDP 208 (633)
Q Consensus 198 s~Dg~IkIWDl 208 (633)
+.|..|.+|++
T Consensus 312 skD~rISLWkL 322 (323)
T KOG0322|consen 312 SKDARISLWKL 322 (323)
T ss_pred cCCceEEeeec
Confidence 88999999986
No 202
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.8e-11 Score=132.79 Aligned_cols=188 Identities=18% Similarity=0.322 Sum_probs=146.3
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (633)
Q Consensus 1 AFSpdG~~LaSgs~D---G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l 77 (633)
.|+.+|.||++...+ ..|.|+++...+...-|.. ..+.|.++.|+|... +|+.+.. ..|+|||+.... .+..+
T Consensus 528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqe-lvKkL 603 (733)
T KOG0650|consen 528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQE-LVKKL 603 (733)
T ss_pred eeecCCceEEEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCc-eEEEEec-cceEEEehhHHH-HHHHH
Confidence 488999999987654 4699999977766655653 456677899999987 5666554 789999998755 35666
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC---
Q 006743 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR--- 152 (633)
Q Consensus 78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg-k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr--- 152 (633)
......|..++.+|.|..|+.++.|+.++.||+.-. ++.+.+ -|...+++|+|++.-..+++|+.||.+.||.-+
T Consensus 604 ~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~ 683 (733)
T KOG0650|consen 604 LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN 683 (733)
T ss_pred hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence 677788999999999999999999999999999754 444444 589999999999999999999999999998433
Q ss_pred ---CCC--CceEEEeecCCCCC----eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcc
Q 006743 153 ---GKP--QPLTVLRACSSSEA----VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP 206 (633)
Q Consensus 153 ---s~~--k~v~~l~~~~H~~~----VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIW 206 (633)
.+. .|++.+. +|... |..+.|+|...+|+ +++.|+.|++|
T Consensus 684 Dl~qnpliVPlK~L~--gH~~~~~~gVLd~~wHP~qpWLf------------sAGAd~tirlf 732 (733)
T KOG0650|consen 684 DLLQNPLIVPLKRLR--GHEKTNDLGVLDTIWHPRQPWLF------------SAGADGTIRLF 732 (733)
T ss_pred hhhcCCceEeeeecc--CceeecccceEeecccCCCceEE------------ecCCCceEEee
Confidence 221 2344454 66655 88999999666554 44679999988
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.27 E-value=1.4e-10 Score=121.65 Aligned_cols=145 Identities=18% Similarity=0.277 Sum_probs=118.5
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCC--CCCcEEEEEEccCCCeEEEE-E-eCCCeEEEEECCCCCceeEEeccCC
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELKDP--NEQVLRVLDYSRNSRHLLVT-A-GDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~--~~~~VssLafSpdg~~lLaS-G-s~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
.++|+++-.+ .|+|||+++.+.+..+... +...+.++.++..+. +++- + ...|.|+|||+.+-+. +..+..|.
T Consensus 97 r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~-ylAyp~s~t~GdV~l~d~~nl~~-v~~I~aH~ 173 (391)
T KOG2110|consen 97 RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANC-YLAYPGSTTSGDVVLFDTINLQP-VNTINAHK 173 (391)
T ss_pred cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCc-eEEecCCCCCceEEEEEccccee-eeEEEecC
Confidence 4566666544 5999999999999887653 444566555555555 4443 2 2468999999988874 67788999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 82 APTAGISFSSDDKIIASVGLDKK-LYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGt-VrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
+.+-|++|+++|.+||++++.|+ ||++++.+|+.+..+. ....|.+++|+|++.+|++.+..++|+||.+..
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 99999999999999999999995 7899999999998884 345689999999999999999999999998875
No 204
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.1e-09 Score=120.37 Aligned_cols=178 Identities=15% Similarity=0.184 Sum_probs=122.5
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 006743 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (633)
Q Consensus 1 AFSpdG~~LaSgs~D---G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~ 75 (633)
+|+|||++|+..+.+ ..|++||+.+++...... ....+....|+|+|+.++++...+| .|++||+.++. ..
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~--~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~--~~ 280 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN--FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ--LS 280 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC--CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC--eE
Confidence 489999999876644 369999998876543221 2233445899999986666666666 58888998876 34
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC-C--eEEEE
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFY 149 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~D---GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D-G--sV~IW 149 (633)
.+..+........|+||++.|+..+.. ..|+++|+.+++...............|+|||++|+....+ + .|++|
T Consensus 281 ~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 281 RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence 556666667778999999988776643 26888899887755443323334567899999999877653 3 58889
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006743 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~ 187 (633)
|+.++. ...+. +........|+|+|+.++....
T Consensus 361 dl~tg~--~~~lt---~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 361 DLQRGS--VRILT---DTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred ECCCCC--EEEcc---CCCCCCCceECCCCCEEEEEEe
Confidence 998763 23333 2223335689999888876533
No 205
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=2.4e-10 Score=120.64 Aligned_cols=197 Identities=19% Similarity=0.273 Sum_probs=151.0
Q ss_pred CCEEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEecc
Q 006743 6 DEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk----~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D--GtI~IWDl~t~~~~v~~l~~ 79 (633)
...|++|-.+|.+.+|..+.+. ....+. ....+..|.-++...+++++|+.. ..+.|||+...+. +-.-+.
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q-iw~aKN 191 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ-IWSAKN 191 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeeccccee-eeeccC
Confidence 3467889999999999987443 333343 234556677777777788889998 8999999987642 211111
Q ss_pred ---------CCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC-ceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeE
Q 006743 80 ---------HSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSR-RPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRV 146 (633)
Q Consensus 80 ---------H~~~VtsLafSPd--g~~LaSgS~DGtVrIWDlrtg-k~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV 146 (633)
-.-.++++.|-+. ...|++++.-+.|++||.+.+ +++..+. .+.+|.++...|+++.|++|..-|.+
T Consensus 192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence 1235678899886 889999999999999999974 5677774 67899999999999999999999999
Q ss_pred EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcccc
Q 006743 147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (633)
Q Consensus 147 ~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~s~ 219 (633)
..||++.++.....+. +..+.|++|..+|+++++++| +-|+.|+|+|+...........
T Consensus 272 ~~FD~r~~kl~g~~~k--g~tGsirsih~hp~~~~las~------------GLDRyvRIhD~ktrkll~kvYv 330 (412)
T KOG3881|consen 272 AKFDLRGGKLLGCGLK--GITGSIRSIHCHPTHPVLASC------------GLDRYVRIHDIKTRKLLHKVYV 330 (412)
T ss_pred heecccCceeeccccC--CccCCcceEEEcCCCceEEee------------ccceeEEEeecccchhhhhhhh
Confidence 9999999854444444 778999999999966665554 7799999999987555444433
No 206
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.5e-09 Score=120.75 Aligned_cols=176 Identities=14% Similarity=0.175 Sum_probs=118.3
Q ss_pred CccCCCCEEEEEECC-C--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006743 1 MYNCKDEHLASISLS-G--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (633)
Q Consensus 1 AFSpdG~~LaSgs~D-G--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--I~IWDl~t~~~~v~ 75 (633)
+|+|||++|+..+.+ + .|++||+.+++...... ........+|+|+|+.++++...+|. |++||+.+++ ..
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~ 299 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS--FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LT 299 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC--CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eE
Confidence 489999999876543 2 58999998876533221 12223457999999976667777775 7777887766 45
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc-CC--eEEEE
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGL-D--KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFY 149 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~-D--GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~-DG--sV~IW 149 (633)
.+..+...+...+|+||+++|+..+. + ..|+++|+.+++..............+|+|||++|+..+. ++ .|.++
T Consensus 300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 300 RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence 55666666788999999998877664 3 3688889888776544323333455789999999887655 34 46667
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
|+.++. ...+.. . .......|+|+|+.|+..
T Consensus 380 dl~~g~--~~~lt~--~-~~d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 380 DLETGA--MQVLTS--T-RLDESPSVAPNGTMVIYS 410 (448)
T ss_pred ECCCCC--eEEccC--C-CCCCCceECCCCCEEEEE
Confidence 877763 223321 1 122345799998887655
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2.4e-10 Score=126.14 Aligned_cols=169 Identities=14% Similarity=0.140 Sum_probs=117.5
Q ss_pred CccCCCCEEEEEE-CCCcEEE--EECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743 1 MYNCKDEHLASIS-LSGDLIL--HNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (633)
Q Consensus 1 AFSpdG~~LaSgs-~DG~I~I--WDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l 77 (633)
+|+|||++|+.+. .+|.+.| ||+.+++. ..+.. +...+..+.|+|+|+.+++++..+|...||++.........+
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 5899999988765 6776554 56655554 44443 344566789999998666666678888888874332223333
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC-CCC
Q 006743 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG-KPQ 156 (633)
Q Consensus 78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs-~~k 156 (633)
.+.. .+.+|+|++++|+.++.++ +.+||+.+++....... .....+.|+|||++|+.++.+|.+.+|++.. ...
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 3433 5678999999999888766 55699998876543322 2346788999999999999999888777532 113
Q ss_pred ceEEEeecCCCCCeeEEEEccC
Q 006743 157 PLTVLRACSSSEAVSSLCWQRA 178 (633)
Q Consensus 157 ~v~~l~~~~H~~~VtsLafsPd 178 (633)
....+. .|.+.+..++|+|-
T Consensus 407 ~~~~l~--~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLP--GSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEcc--CCCCCCCCcccCCC
Confidence 334444 67788899999983
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=4.1e-11 Score=130.29 Aligned_cols=171 Identities=19% Similarity=0.232 Sum_probs=130.3
Q ss_pred EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEE
Q 006743 30 AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYT 107 (633)
Q Consensus 30 ~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrI 107 (633)
+++.+ |.+.|.|+.|+.+|. +|++|++|-.+.|||.-..+.....-.+|...|.++.|-| +.+.+++|..|..|++
T Consensus 44 ~eL~G-H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTG-HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhcc-ccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45555 778899999999998 9999999999999999877765566679999999999999 6778999999999999
Q ss_pred EeCCCC----------ceeeEe-eCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCCceE-------EEeecCCCC
Q 006743 108 YDPGSR----------RPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQPLT-------VLRACSSSE 168 (633)
Q Consensus 108 WDlrtg----------k~v~~i-~h~~~ItsLafSPdG-~~LatGs~DGsV~IWDlrs~~k~v~-------~l~~~~H~~ 168 (633)
+|+... .....+ .|...|..++-.|++ +.+.++++||+|+-||+|....+-. .......--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999741 112222 478889999999988 8899999999999999997421111 011001123
Q ss_pred CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 169 ~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
...|+..+|. +..+|+.|+.|--.++||.|...+
T Consensus 202 elk~ltisp~-----------rp~~laVGgsdpfarLYD~Rr~lk 235 (758)
T KOG1310|consen 202 ELKCLTISPS-----------RPYYLAVGGSDPFARLYDRRRVLK 235 (758)
T ss_pred eeeeeeecCC-----------CCceEEecCCCchhhhhhhhhhcc
Confidence 3567777775 445566667799999999775544
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.20 E-value=1.4e-11 Score=138.83 Aligned_cols=193 Identities=17% Similarity=0.224 Sum_probs=139.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
+|...|.++++|+.|..|+||..+++.++..+.+ |...++.++.+.++- ++++++.|..|++|.+..+.+ +..+.+|
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~~~p-vsvLrgh 273 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNT-MIAAASNDKVIRVWRLPDGAP-VSVLRGH 273 (1113)
T ss_pred eeccccceEeecCccceeeeeeccchhhhccCCC-Cccccchhccchhhh-hhhhcccCceEEEEecCCCch-HHHHhcc
Confidence 3677899999999999999999999999999998 556678899887765 899999999999999998885 7889999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE-----eeC--------------------------CCCeEEEE
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-----ITY--------------------------EAPFSSLA 129 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~-----i~h--------------------------~~~ItsLa 129 (633)
++.|++++|+|-. +.+.||++++||.+-...+.. +.. ...+.+++
T Consensus 274 tgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~ 349 (1113)
T KOG0644|consen 274 TGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA 349 (1113)
T ss_pred ccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh
Confidence 9999999999943 778999999999871100000 000 11122333
Q ss_pred EecCCC-----------EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006743 130 FIDDDW-----------ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (633)
Q Consensus 130 fSPdG~-----------~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs 198 (633)
|....- +.+++-.+-.+.+|++-++ ...+.+. +|...+..+.++|- +..+..+++
T Consensus 350 ~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~--ghsd~~yvLd~Hpf-----------n~ri~msag 415 (1113)
T KOG0644|consen 350 WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLM--GHSDEVYVLDVHPF-----------NPRIAMSAG 415 (1113)
T ss_pred hhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhc--ccccceeeeeecCC-----------CcHhhhhcc
Confidence 333222 3333334556777887776 3334444 78899999999995 344455666
Q ss_pred CCCeEEccCCCCCCCC
Q 006743 199 VGDSILMPDPLPSVTT 214 (633)
Q Consensus 199 ~Dg~IkIWDlr~~~~~ 214 (633)
.||...|||+-...+.
T Consensus 416 ~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 416 YDGSTIIWDIWEGIPI 431 (1113)
T ss_pred CCCceEeeecccCCcc
Confidence 7888888887654443
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.19 E-value=2.2e-10 Score=118.33 Aligned_cols=157 Identities=11% Similarity=0.207 Sum_probs=125.7
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-C
Q 006743 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-R 113 (633)
Q Consensus 37 ~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt-g 113 (633)
...|+|.+|+++.. .++.+.....|.||...+.. ...+++..|...|++|+|+|..+.|++|+.|..-++|.... +
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 46789999999987 78999999999999997665 34788999999999999999999999999999999999843 3
Q ss_pred c--e-eeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc-eEEEeecCCCCCeeEEEEccCCCeEEEeccCC
Q 006743 114 R--P-SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP-LTVLRACSSSEAVSSLCWQRAKPVFIDETTCK 189 (633)
Q Consensus 114 k--~-v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~-v~~l~~~~H~~~VtsLafsPdg~~Las~s~~s 189 (633)
+ + +.++.+....+++.|+|.++.+++|+.-..|.||-.+....- +.......+...|++++|+|++
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn---------- 158 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN---------- 158 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc----------
Confidence 2 2 234478999999999999999999999999999988765321 0111112567889999999954
Q ss_pred CCeEEEEeeCCCeEEcc
Q 006743 190 AETALLGGAVGDSILMP 206 (633)
Q Consensus 190 d~~lLlSgs~Dg~IkIW 206 (633)
.++..|+.|+.++|+
T Consensus 159 --VLlaaGs~D~k~rVf 173 (361)
T KOG1523|consen 159 --VLLAAGSTDGKCRVF 173 (361)
T ss_pred --ceecccccCcceeEE
Confidence 445555667777766
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.17 E-value=5e-09 Score=108.43 Aligned_cols=147 Identities=14% Similarity=0.229 Sum_probs=111.2
Q ss_pred CCEEEEEECCCcEEEEECC-CCceeEEEeCCC-CCcEEEEEEccCCCeEEEE-EeCCCeEEEEECCCCCc-eeEEeccCC
Q 006743 6 DEHLASISLSGDLILHNLA-SGAKAAELKDPN-EQVLRVLDYSRNSRHLLVT-AGDDGTLHLWDTTGRSP-KVSWLKQHS 81 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~-tgk~v~~~~~~~-~~~VssLafSpdg~~lLaS-Gs~DGtI~IWDl~t~~~-~v~~l~~H~ 81 (633)
.++|++. ..+.|+||... +.+.++.+.... ...+.+++=..+.. +||. |-.-|.|+|-|+..... .-..+..|.
T Consensus 104 r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~ 181 (346)
T KOG2111|consen 104 RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHD 181 (346)
T ss_pred CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEccc
Confidence 3445544 46789999987 455555554322 22343333222222 3333 55679999999976553 236788999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743 82 APTAGISFSSDDKIIASVGLDKK-LYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGt-VrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~ 154 (633)
..|.|++.+.+|.++|+++..|+ |||||..+|..+..+. ....|+||+|+|+..+|++.+..|+|+||.++..
T Consensus 182 s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 182 SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999996 7999999999998884 4577999999999999999999999999998864
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.15 E-value=9.8e-09 Score=106.31 Aligned_cols=179 Identities=9% Similarity=0.129 Sum_probs=128.9
Q ss_pred CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC--CCCeEEEEEcCCC
Q 006743 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH--SAPTAGISFSSDD 93 (633)
Q Consensus 16 G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H--~~~VtsLafSPdg 93 (633)
+.|.|||=...+++.++. -...|.+|++.++ .|++.- .+.|+||.....-...+.+... ...+.+++-.-+.
T Consensus 75 NkviIWDD~k~~~i~el~--f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS--FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred ceEEEEecccCcEEEEEE--eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence 479999965666777766 4577888999876 355443 5889999997544334444332 2334444333344
Q ss_pred CEEEEE-eCCCeEEEEeCCCCce---eeEeeCCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCCCCceEEEeecCCCC
Q 006743 94 KIIASV-GLDKKLYTYDPGSRRP---SSCITYEAPFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQPLTVLRACSSSE 168 (633)
Q Consensus 94 ~~LaSg-S~DGtVrIWDlrtgk~---v~~i~h~~~ItsLafSPdG~~LatGs~DGs-V~IWDlrs~~k~v~~l~~~~H~~ 168 (633)
.+||.- -.-|.|.|.|+...+. ..+.+|...|.|++++-+|..||+++..|+ |+|||..++.. +..++.-....
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-l~E~RRG~d~A 227 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-LQELRRGVDRA 227 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-eeeeecCCchh
Confidence 455543 4568999999986554 555589999999999999999999999998 89999999854 44455445567
Q ss_pred CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 169 ~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
.|++++|+|+..+|++. +..|++.|+.++....
T Consensus 228 ~iy~iaFSp~~s~Lavs------------SdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVS------------SDKGTLHIFSLRDTEN 260 (346)
T ss_pred eEEEEEeCCCccEEEEE------------cCCCeEEEEEeecCCC
Confidence 79999999976666554 6689999998876443
No 213
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=3.9e-09 Score=105.94 Aligned_cols=143 Identities=17% Similarity=0.273 Sum_probs=113.0
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCCceeEEec---
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDY-SRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--- 78 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLaf-Spdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~--- 78 (633)
.|..+-++.++.|+.++.||+++|+...++++ |.+.|.++.- +..+ .+++|++||+++|||+++.+. +..+.
T Consensus 123 dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~--qilsG~EDGtvRvWd~kt~k~-v~~ie~yk 198 (325)
T KOG0649|consen 123 DPSENSILFAGGDGVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANG--QILSGAEDGTVRVWDTKTQKH-VSMIEPYK 198 (325)
T ss_pred ccCCCcEEEecCCeEEEEEEecCCEEEEEEcC-CcceeeeeeecccCc--ceeecCCCccEEEEeccccce-eEEecccc
Confidence 45667777888999999999999999999998 6677787776 4444 489999999999999998875 33332
Q ss_pred ------cC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743 79 ------QH-SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (633)
Q Consensus 79 ------~H-~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl 151 (633)
.| ...|-+++.+ ..++++|+. ..+.+|.++..++..++...+++..+.|.. +.+++++..+.|.-|.+
T Consensus 199 ~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred ChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccceeeeee
Confidence 22 2346666655 567777664 469999999999999999999999999974 47888888888999988
Q ss_pred CCC
Q 006743 152 RGK 154 (633)
Q Consensus 152 rs~ 154 (633)
..-
T Consensus 274 ~Gv 276 (325)
T KOG0649|consen 274 NGV 276 (325)
T ss_pred ccE
Confidence 753
No 214
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=8.7e-09 Score=113.93 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=115.4
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 006743 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK 94 (633)
Q Consensus 17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs--~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~ 94 (633)
.|++||. ++.....+.. +...+...+|+|+|+.++++.. .+..|++||+.++. ...+..+.+.+.+.+|+|||+
T Consensus 183 ~l~~~d~-dg~~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 183 RLAIMDQ-DGANVRYLTD-GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--RELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred EEEEECC-CCCCcEEEec-CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--EEEeecCCCcccCcEECCCCC
Confidence 7889997 4555555554 4556778999999984444432 24689999998876 344556677788999999998
Q ss_pred EEE-EEeCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 006743 95 IIA-SVGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE 168 (633)
Q Consensus 95 ~La-SgS~DG--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~-DG--sV~IWDlrs~~k~v~~l~~~~H~~ 168 (633)
.|+ +.+.++ .|++||+.+++......+.......+|+|||+.|+..+. +| .|++||+.+.. . ..+. .+.+
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~-~~lt--~~~~ 334 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-P-RRIS--FGGG 334 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-e-EEee--cCCC
Confidence 875 455555 488889998877665556666778999999999887664 33 68888987652 2 2332 2345
Q ss_pred CeeEEEEccCCCeEEEe
Q 006743 169 AVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 169 ~VtsLafsPdg~~Las~ 185 (633)
.+....|+|+|++|+..
T Consensus 335 ~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFT 351 (435)
T ss_pred cccCeEECCCCCEEEEE
Confidence 56778999999888765
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=2.1e-09 Score=118.87 Aligned_cols=168 Identities=16% Similarity=0.170 Sum_probs=115.6
Q ss_pred CccCCCCEEEEE-ECCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006743 1 MYNCKDEHLASI-SLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (633)
Q Consensus 1 AFSpdG~~LaSg-s~DG--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--I~IWDl~t~~~~v~ 75 (633)
+|+|||++|+.. +.+| .|++||+.+++.... ..+ ...+....|+|+|+.++++...++. |+++|+.++. ..
T Consensus 249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~ 324 (429)
T PRK03629 249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQ 324 (429)
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eE
Confidence 489999988865 4455 599999987765443 322 2345668999999855555544554 4445666655 33
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCe---EEEE
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGR---VVFY 149 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~D---GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGs---V~IW 149 (633)
.+..+...+.+.+|+|||++|+..+.+ ..|++||+.+++..... .........|+|||++|+.++.++. ++++
T Consensus 325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 325 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC-CCCCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 444444556788999999999887654 36889999888754433 2233456889999999999887764 7788
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743 150 DIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~~VtsLafsP 177 (633)
++.... ...+. .|.+.+...+|+|
T Consensus 404 ~~~G~~--~~~l~--~~~~~~~~p~Wsp 427 (429)
T PRK03629 404 STDGRF--KARLP--ATDGQVKFPAWSP 427 (429)
T ss_pred ECCCCC--eEECc--cCCCCcCCcccCC
Confidence 886542 23333 5778889999987
No 216
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=1.9e-09 Score=124.79 Aligned_cols=188 Identities=14% Similarity=0.192 Sum_probs=148.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEE---EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRV---LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~Vss---LafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
+.+.++.++.++.+.+||...+....++.........+ +.++++. -++++|+.-+.|.+|+....+..+ .+.+|.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~-~l~GHe 175 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPI-RLKGHE 175 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCcc-eecccC
Confidence 46788899999999999998887777776433322222 2234443 378999999999999997544333 688999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee--EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS--CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~--~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~ 159 (633)
+.|..+.|+-||.+++++++|+++++|++.+.+... .++|...+..++|.|. .+++++.|.+.++|+.+... +.
T Consensus 176 G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~ 251 (967)
T KOG0974|consen 176 GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LE 251 (967)
T ss_pred CceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--eh
Confidence 999999999999999999999999999999987664 4589999999999988 99999999999999776542 22
Q ss_pred EEeecCCC-CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 160 VLRACSSS-EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 160 ~l~~~~H~-~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
.+. +|. ..|..++..+ +....++++.|+.+++||+.-..
T Consensus 252 ~y~--~h~g~~iw~~~~~~------------~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 252 VYD--EHSGKGIWKIAVPI------------GVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred hhh--hhhhcceeEEEEcC------------CceEEEeeccCcchhhhhhhccc
Confidence 333 443 4578888776 66777888899999999986543
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.11 E-value=1.9e-10 Score=123.45 Aligned_cols=208 Identities=17% Similarity=0.188 Sum_probs=158.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|-|.--+|++++..|.+.--|+.+|+.+..+.. ..+.+..++-+|-+. ++-+|...|+|.+|.-...++.+ .+..|.
T Consensus 217 FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~skePLv-KiLcH~ 293 (545)
T KOG1272|consen 217 FLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKEPLV-KILCHR 293 (545)
T ss_pred ccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccc-eEEEcCCCceEEecCCCCcchHH-HHHhcC
Confidence 334445678889999999999999999988875 345677789999887 89999999999999998888654 456799
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC-CCCC-CceE
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI-RGKP-QPLT 159 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl-rs~~-k~v~ 159 (633)
++|.+|++.++|+++++.+.|..|+|||+|.-..+..+....+...++++..| +++.+....|.||.- -... ....
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~ 371 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGET 371 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCc
Confidence 99999999999999999999999999999987766655446677888888554 444455567999942 2211 1112
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCC
Q 006743 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (633)
Q Consensus 160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ 214 (633)
.+-.+...+.|..+.|+|-...|..+....-..+|+-|+.+-..--|...||..+
T Consensus 372 pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfetr 426 (545)
T KOG1272|consen 372 PYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFETR 426 (545)
T ss_pred chhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcchhh
Confidence 2222234568999999998888887766556677888888877777777666653
No 218
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.11 E-value=5.3e-09 Score=115.30 Aligned_cols=199 Identities=17% Similarity=0.101 Sum_probs=150.3
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCC--CCCcEEEEEEc------c-------------CCCeEEEEEeCCCe
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDP--NEQVLRVLDYS------R-------------NSRHLLVTAGDDGT 61 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~--~~~~VssLafS------p-------------dg~~lLaSGs~DGt 61 (633)
.+-+.++|....||.++|||...++...+|... ..+...+.+|. | .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 455679999999999999999999887777531 23334445553 1 12336888889999
Q ss_pred EEEEECCCCCceeEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEE
Q 006743 62 LHLWDTTGRSPKVSWL-KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTA 139 (633)
Q Consensus 62 I~IWDl~t~~~~v~~l-~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~Lat 139 (633)
|.+|++..++...... ..|.+.|+++.++.+-..|.+++.|+.+.+|+...++.++... ....+.+++++|||.++++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999888433333 4799999999999999999999999999999999998887774 5667999999999999998
Q ss_pred EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEE-EeeCCCeEEccCCCCCCC
Q 006743 140 GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALL-GGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 140 Gs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLl-Sgs~Dg~IkIWDlr~~~~ 213 (633)
++ +.|.+||+++++ .+..+. +|.++|.++.|-.+ + ....+.+++ +...+..+.+|-+.....
T Consensus 162 as--~~ik~~~~~~ke-vv~~ft--gh~s~v~t~~f~~~----~---~g~~G~~vLssa~~~r~i~~w~v~~~~k 224 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKE-VVITFT--GHGSPVRTLSFTTL----I---DGIIGKYVLSSAAAERGITVWVVEKEDK 224 (541)
T ss_pred cc--ceEEEEEccCce-EEEEec--CCCcceEEEEEEEe----c---cccccceeeeccccccceeEEEEEcccc
Confidence 86 689999999983 344444 99999999999764 0 111233333 344477788886665333
No 219
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.11 E-value=4.1e-10 Score=113.95 Aligned_cols=143 Identities=21% Similarity=0.380 Sum_probs=112.1
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEe---------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--Ccee-E
Q 006743 8 HLASISLSGDLILHNLASGAKAAELK---------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--SPKV-S 75 (633)
Q Consensus 8 ~LaSgs~DG~I~IWDl~tgk~v~~~~---------~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~--~~~v-~ 75 (633)
+|++|-.+|.|.+||+.++..+..++ ..|.+.|..+.|.+.-. .=++|+.+..+.+|.+... ...+ .
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCcccccc
Confidence 45567789999999999875443332 13667788888876533 3457777888999988543 2111 1
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDl 151 (633)
.+.-.+..|..+.+-||++.+++++.|+.||||..++.+++..+. |.+.|++++|+|+...+|.++.|++|.+|++
T Consensus 246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 222233568899999999999999999999999999999998884 8899999999999999999999999999986
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=1.8e-09 Score=114.01 Aligned_cols=166 Identities=12% Similarity=0.139 Sum_probs=132.6
Q ss_pred EEEEEECC--CcEEEEECCCCceeEEEeCCCC--------CcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCceeEE
Q 006743 8 HLASISLS--GDLILHNLASGAKAAELKDPNE--------QVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPKVSW 76 (633)
Q Consensus 8 ~LaSgs~D--G~I~IWDl~tgk~v~~~~~~~~--------~~VssLafSpd-g~~lLaSGs~DGtI~IWDl~t~~~~v~~ 76 (633)
.+++||.. ..+.|||++..+.+..-++-.. -.++++.|.+. ..+.|+++..-++|++||.+.+..++..
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 45668888 8899999988866655443222 23556777765 1347999999999999999988878888
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE-e-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~-i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~ 154 (633)
+.-...+|.++...|+++.|++|..-+.+..||++.++.... + +..+.|.++..+|...+|++++-|+.|+|+|+.+.
T Consensus 243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 888889999999999999999999999999999999988766 3 57899999999999999999999999999999985
Q ss_pred CCceEEEeecCCCCCeeEEEEcc
Q 006743 155 PQPLTVLRACSSSEAVSSLCWQR 177 (633)
Q Consensus 155 ~k~v~~l~~~~H~~~VtsLafsP 177 (633)
+-..+++ -...+++|-+.+
T Consensus 323 kll~kvY----vKs~lt~il~~~ 341 (412)
T KOG3881|consen 323 KLLHKVY----VKSRLTFILLRD 341 (412)
T ss_pred hhhhhhh----hhccccEEEecC
Confidence 3222222 234566666544
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.08 E-value=4.4e-09 Score=116.65 Aligned_cols=192 Identities=11% Similarity=0.164 Sum_probs=136.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCce--------eEEE--e--------------------------CCCCCcEEEEE
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAK--------AAEL--K--------------------------DPNEQVLRVLD 44 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~--------v~~~--~--------------------------~~~~~~VssLa 44 (633)
||+.||+++|+|+.|..|.+|+.+-... ++.. . ......+.++.
T Consensus 60 Ays~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~Cs 139 (1081)
T KOG1538|consen 60 AYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCS 139 (1081)
T ss_pred EEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEee
Confidence 6899999999999999999998642111 1100 0 00122345567
Q ss_pred EccCCCeEEEEEeCCCeEEEEECCCCCce-eEEeccCCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEeCCCCceeeE
Q 006743 45 YSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHSAPTAGISFSSD-----DKIIASVGLDKKLYTYDPGSRRPSSC 118 (633)
Q Consensus 45 fSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~l~~H~~~VtsLafSPd-----g~~LaSgS~DGtVrIWDlrtgk~v~~ 118 (633)
|..||. +|+.|-.||+|.|-+..+.... +....+.+.+|++++|+|. ...+++.....++.+|.+.....-..
T Consensus 140 WtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~ 218 (1081)
T KOG1538|consen 140 WTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD 218 (1081)
T ss_pred ecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc
Confidence 777787 8999999999999876554422 2223356789999999983 24788888888998888864333223
Q ss_pred eeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006743 119 ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (633)
Q Consensus 119 i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs 198 (633)
-..+-...|+.+.++|.+++.|+.|+.+++|.-+.- .+.++. ....+|+.++..|++++++. |+
T Consensus 219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv--rLGTvg--~~D~WIWtV~~~PNsQ~v~~------------GC 282 (1081)
T KOG1538|consen 219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV--RLGTVG--EQDSWIWTVQAKPNSQYVVV------------GC 282 (1081)
T ss_pred ccCCCCchhheeccCCcEEEEccCCCceEEEeecCe--EEeecc--ccceeEEEEEEccCCceEEE------------EE
Confidence 345566788999999999999999999999975542 122222 35679999999997665544 46
Q ss_pred CCCeEEccCCC
Q 006743 199 VGDSILMPDPL 209 (633)
Q Consensus 199 ~Dg~IkIWDlr 209 (633)
.||+|..|++-
T Consensus 283 qDGTiACyNl~ 293 (1081)
T KOG1538|consen 283 QDGTIACYNLI 293 (1081)
T ss_pred ccCeeehhhhH
Confidence 79999888774
No 222
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.07 E-value=2.8e-10 Score=117.87 Aligned_cols=138 Identities=14% Similarity=0.165 Sum_probs=109.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
.|+|+|+++|++..- .+.|-|.++-+..+.+.. - +.|.-+.|..+..++|+....|+.|.+|++...+. ...+...
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-l-dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIdeg 90 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-L-DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDEG 90 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-H-HHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEeccC
Confidence 489999999999765 888999888776655442 2 33444899999888888889999999999988774 3456677
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc
Q 006743 81 SAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS 142 (633)
Q Consensus 81 ~~~VtsLafSPdg~~La-SgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~ 142 (633)
...+..++|+|||++|+ +...|-.|.+|.+.+.+.....-.+..+..++|+|||++.+..+.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeec
Confidence 78899999999996655 555688999999998877665545666799999999999887765
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=6.4e-09 Score=115.01 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=112.9
Q ss_pred CccCCCCEEEE-EECCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006743 1 MYNCKDEHLAS-ISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (633)
Q Consensus 1 AFSpdG~~LaS-gs~DG--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--I~IWDl~t~~~~v~ 75 (633)
+|+|||++|+. .+.+| .|++||+.+++.. .+.. +......++|+|+++.++++...+|. |+++|+.++.. .
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~ 329 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--E 329 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--E
Confidence 48999998764 45555 5999999877643 3433 33344568999999855555555555 66667766652 3
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY 149 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~DG---tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D---GsV~IW 149 (633)
.+..+......++|+|+|++|+..+.++ .|++||+.+++.. .+.+........|+|||++|+....+ +.|+++
T Consensus 330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 3333444556789999999998876543 6999999888765 33444455677999999988876653 458888
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743 150 DIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~~VtsLafsP 177 (633)
|+.... ...+. .+.+.+..++|+|
T Consensus 409 ~~~g~~--~~~l~--~~~g~~~~p~wsp 432 (433)
T PRK04922 409 STDGRV--RQRLV--SADGEVREPAWSP 432 (433)
T ss_pred ECCCCc--eEEcc--cCCCCCCCCccCC
Confidence 886542 23333 3456677777776
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=3.7e-09 Score=115.96 Aligned_cols=197 Identities=17% Similarity=0.229 Sum_probs=136.2
Q ss_pred ccCCCCEE-EEEECCCcEEEEECCCCceeEE---------E-------------e------CC------C----CCcEEE
Q 006743 2 YNCKDEHL-ASISLSGDLILHNLASGAKAAE---------L-------------K------DP------N----EQVLRV 42 (633)
Q Consensus 2 FSpdG~~L-aSgs~DG~I~IWDl~tgk~v~~---------~-------------~------~~------~----~~~Vss 42 (633)
.+|||+|+ |+|...-.|++||+....+-.+ | + -| + ....++
T Consensus 59 ~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRD 138 (703)
T KOG2321|consen 59 VSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRD 138 (703)
T ss_pred ecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCcc
Confidence 47899976 5666788999999965322110 0 0 00 0 001122
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--
Q 006743 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-- 120 (633)
Q Consensus 43 LafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-- 120 (633)
++++.-... |+.++....|+-++++.+.. +.-+....+.+++|..++-+.+|++|+.||.|-.||.|+...+..+.
T Consensus 139 m~y~~~scD-ly~~gsg~evYRlNLEqGrf-L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 139 MKYHKPSCD-LYLVGSGSEVYRLNLEQGRF-LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccccCCCcc-EEEeecCcceEEEEcccccc-ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 333322221 45555566788888887763 44555566899999999988999999999999999999877665553
Q ss_pred -----CCC-----CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743 121 -----YEA-----PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (633)
Q Consensus 121 -----h~~-----~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd 190 (633)
+.+ .|+++.|+.+|-.+++|+.+|.|+|||+|... |+. +..++..-+|..+.|.+. ++
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~-pl~-~kdh~~e~pi~~l~~~~~----------~~ 284 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK-PLL-VKDHGYELPIKKLDWQDT----------DQ 284 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-cee-ecccCCccceeeeccccc----------CC
Confidence 222 39999999999999999999999999999974 333 333466788999999874 23
Q ss_pred CeEEEEeeCCCeEEccCCCCCCC
Q 006743 191 ETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 191 ~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
...+++.. ...++|||-....+
T Consensus 285 q~~v~S~D-k~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 285 QNKVVSMD-KRILKIWDECTGKP 306 (703)
T ss_pred CceEEecc-hHHhhhcccccCCc
Confidence 33444433 67899999865544
No 225
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=6.9e-09 Score=118.54 Aligned_cols=182 Identities=15% Similarity=0.202 Sum_probs=136.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC--C-ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743 1 MYNCKDEHLASISLSGDLILHNLAS--G-AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~t--g-k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l 77 (633)
++||+++++|+|..||.|.+|.--. . +..+.+..-|...|.++.|+++|. +|++|+..|.+.+|.+.+++ .+.+
T Consensus 212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T~~--kqfL 288 (792)
T KOG1963|consen 212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLETGK--KQFL 288 (792)
T ss_pred EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeecCCC--cccc
Confidence 4799999999999999999996322 1 122222222556788999999998 89999999999999999888 4667
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee------------CCCCeEEEEEecCCCEEEEEEcCCe
Q 006743 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT------------YEAPFSSLAFIDDDWILTAGTSNGR 145 (633)
Q Consensus 78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~------------h~~~ItsLafSPdG~~LatGs~DGs 145 (633)
..-..+|..+.++||+.+.+.+..|+.|.+....+......+. ..+-.+.++++|.-+.++..+..|.
T Consensus 289 PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~ 368 (792)
T KOG1963|consen 289 PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH 368 (792)
T ss_pred cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce
Confidence 8888999999999999999999999999998876544433331 2344678899997788888899999
Q ss_pred EEEEECCCCCCceEEEee--cC------CCCCeeEEEEccCCCeEEEe
Q 006743 146 VVFYDIRGKPQPLTVLRA--CS------SSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 146 V~IWDlrs~~k~v~~l~~--~~------H~~~VtsLafsPdg~~Las~ 185 (633)
|.+||+-+.....+.... .. +.-.++.++.+..|.++++.
T Consensus 369 vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~ 416 (792)
T KOG1963|consen 369 VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL 416 (792)
T ss_pred EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence 999999876443222111 11 22335666666667766654
No 226
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.06 E-value=2.9e-09 Score=120.35 Aligned_cols=188 Identities=13% Similarity=0.178 Sum_probs=133.8
Q ss_pred CEEEEEECCCcEEEEECCCCceeE------EEe-----CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---
Q 006743 7 EHLASISLSGDLILHNLASGAKAA------ELK-----DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--- 72 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~v~------~~~-----~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~--- 72 (633)
.-+++++.||.|..|++..-.... ... ......+.+++|.+...+.|+.|.++|.|+--+-.+...
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 458899999999999875432210 011 112345678999998888899999999998844322221
Q ss_pred ----eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC-CCceeeEe-eCCCCeEEEEEecC-CCEEEEEEcCC
Q 006743 73 ----KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPG-SRRPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNG 144 (633)
Q Consensus 73 ----~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlr-tgk~v~~i-~h~~~ItsLafSPd-G~~LatGs~DG 144 (633)
.+.....|.+.|+++.++| ..+.|++++ |.+|+||... ...++..+ .+...+++++|+|. -..++++..||
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence 1335567889999999999 555566666 9999999987 55555544 45666999999995 46788888899
Q ss_pred eEEEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 145 RVVFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 145 sV~IWDlrs~~-k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
.|.|||+.... .|+.... .+....+.+.|+++|+.|+++ ...|.+.+|++.
T Consensus 465 ~l~iWDLl~~~~~Pv~s~~--~~~~~l~~~~~s~~g~~lavG------------d~~G~~~~~~l~ 516 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEPVLSQK--VCSPALTRVRWSPNGKLLAVG------------DANGTTHILKLS 516 (555)
T ss_pred ceehhhhhccccCCccccc--ccccccceeecCCCCcEEEEe------------cCCCcEEEEEcC
Confidence 99999998642 3443333 335667777787766655554 668889999885
No 227
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.05 E-value=7.3e-09 Score=121.43 Aligned_cols=196 Identities=13% Similarity=0.156 Sum_probs=135.2
Q ss_pred CCCCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-e--
Q 006743 4 CKDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-K-- 73 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk-------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~-~-- 73 (633)
+++.++++|+.||+|++||...-. ...++. ..+..+.++...+.++ .+|.++.||.|++.++..... .
T Consensus 1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~ 1136 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRV 1136 (1431)
T ss_pred CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCC-eEEEEcCCCeEEEEEccccccccce
Confidence 456899999999999999986321 112222 1456788888888887 788899999999999965221 1
Q ss_pred ---eEEeccC--CCCeEEEEEcC-CCC-EEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcC
Q 006743 74 ---VSWLKQH--SAPTAGISFSS-DDK-IIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSN 143 (633)
Q Consensus 74 ---v~~l~~H--~~~VtsLafSP-dg~-~LaSgS~DGtVrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~D 143 (633)
.+....+ ...|..-+|.. ... .++.+..-+.|..||+++......+. ..+.|++++.+|.+.++++|+..
T Consensus 1137 ~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~ 1216 (1431)
T KOG1240|consen 1137 ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR 1216 (1431)
T ss_pred eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC
Confidence 1111222 22334445544 344 78888889999999999876555443 46889999999999999999999
Q ss_pred CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee-CCCeEEccCCCCC
Q 006743 144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA-VGDSILMPDPLPS 211 (633)
Q Consensus 144 GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs-~Dg~IkIWDlr~~ 211 (633)
|.+.+||+|-+ .++..++. .+..+|..++.+|--+ .....+.++. ..+.|.+|++...
T Consensus 1217 G~l~lWDLRF~-~~i~sw~~-P~~~~i~~v~~~~~~~--------~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1217 GQLVLWDLRFR-VPILSWEH-PARAPIRHVWLCPTYP--------QESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred ceEEEEEeecC-ceeecccC-cccCCcceEEeeccCC--------CCceEEEecccCCCceeeeecccC
Confidence 99999999976 45555553 4558888888887422 0122222233 4667777777544
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.04 E-value=1.7e-09 Score=117.94 Aligned_cols=93 Identities=20% Similarity=0.237 Sum_probs=80.6
Q ss_pred CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 006743 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS 117 (633)
Q Consensus 38 ~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~ 117 (633)
..|..++|+|||+ +||+.+.||.++|+|..+.+. +-..+..-+...|++|+|||++|++|++|..|.||.+..++.+.
T Consensus 291 g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eL-lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 291 GSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQEL-LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred ccccceeEcCCCc-eEEEEecCceEEEeeccHHHH-HHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence 3577789999998 899999999999999988763 33445555789999999999999999999999999999988876
Q ss_pred Ee-eCCCCeEEEEEec
Q 006743 118 CI-TYEAPFSSLAFID 132 (633)
Q Consensus 118 ~i-~h~~~ItsLafSP 132 (633)
.- +|+.+|..|+|+|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 54 7999999999984
No 229
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=4.9e-08 Score=108.16 Aligned_cols=179 Identities=14% Similarity=0.116 Sum_probs=110.9
Q ss_pred CccCCCCEEE---EEECC--CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCC-
Q 006743 1 MYNCKDEHLA---SISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGR- 70 (633)
Q Consensus 1 AFSpdG~~La---Sgs~D--G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG----tI~IWDl~t~- 70 (633)
+|+|||+.++ +...+ ..|++.++.+++...... ........+|+|||+.++++...+| .+.+|++..+
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~--~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~ 268 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA--LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA 268 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec--CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence 5999998532 33333 358888988776433222 1222345799999986666654433 4455777542
Q ss_pred -CceeEEeccCCCCeEEEEEcCCCCEEEEEe-CCCe--EEEEeCCC-CceeeEe-eCCCCeEEEEEecCCCEEEEEEcC-
Q 006743 71 -SPKVSWLKQHSAPTAGISFSSDDKIIASVG-LDKK--LYTYDPGS-RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSN- 143 (633)
Q Consensus 71 -~~~v~~l~~H~~~VtsLafSPdg~~LaSgS-~DGt--VrIWDlrt-gk~v~~i-~h~~~ItsLafSPdG~~LatGs~D- 143 (633)
.........+.......+|+|||+.|+..+ .++. |+++++.. +.....+ .....+...+|+|||++|+....+
T Consensus 269 ~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 269 IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 111222223334456789999999888766 4554 55555542 2223333 344567889999999998876543
Q ss_pred --CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 144 --GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 144 --GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
..|++||+.+++. ..+. .....+....|+|+|+.|+..
T Consensus 349 g~~~I~v~dl~~g~~--~~Lt--~~~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 349 GVRQICVYDLATGRD--YQLT--TSPENKESPSWAIDSLHLVYS 388 (428)
T ss_pred CCcEEEEEECCCCCe--EEcc--CCCCCccceEECCCCCEEEEE
Confidence 4699999987742 2232 223456789999998887654
No 230
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.3e-09 Score=117.72 Aligned_cols=183 Identities=16% Similarity=0.209 Sum_probs=138.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCC--ceeEEec
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRS--PKVSWLK 78 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd-g~~lLaSGs~DGtI~IWDl~t~~--~~v~~l~ 78 (633)
|+..|..|++|+.|..|.+||+..++....+...|...|.-.+|-|. +...+++++.||+|++=.+.... .....+.
T Consensus 150 FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~ 229 (559)
T KOG1334|consen 150 FNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA 229 (559)
T ss_pred ecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc
Confidence 78889999999999999999999999888888777665555678775 33469999999999998874332 2245677
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEe----eCCC---CeEEEEEecCCC-EEEEEEcCCeEEEE
Q 006743 79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEA---PFSSLAFIDDDW-ILTAGTSNGRVVFY 149 (633)
Q Consensus 79 ~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i----~h~~---~ItsLafSPdG~-~LatGs~DGsV~IW 149 (633)
.|.+.|+-++.-| ..+.|.+++.|+.+.-+|++.+.+...+ .+.. ....++.+|.+. .+++|+.|-.+++|
T Consensus 230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvY 309 (559)
T KOG1334|consen 230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVY 309 (559)
T ss_pred cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhh
Confidence 8999999999999 7788999999999999999987654433 2333 577899999664 88999999999999
Q ss_pred ECCCCCCc-----eEEEeec----CCCCCeeEEEEccCCCeEEE
Q 006743 150 DIRGKPQP-----LTVLRAC----SSSEAVSSLCWQRAKPVFID 184 (633)
Q Consensus 150 Dlrs~~k~-----v~~l~~~----~H~~~VtsLafsPdg~~Las 184 (633)
|.+...+. +..+.-. ...-.|+|++|+.++.-+++
T Consensus 310 D~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 310 DQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred cccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence 99863221 1111100 23456899999965544433
No 231
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.3e-09 Score=115.93 Aligned_cols=154 Identities=23% Similarity=0.298 Sum_probs=111.2
Q ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee
Q 006743 41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120 (633)
Q Consensus 41 ssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~ 120 (633)
.+++|+.+|. .+++|+.||+++||+...... +.....|...|.++.|+||++.|++.+.| ..+|||.+++..+....
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t-~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLT-ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchh-hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 5689999998 899999999999999876663 45567889999999999999999999999 89999999997666553
Q ss_pred ---CCCCeEEEEEecCC---CE-EE-EEEcCCeEEEEECCCCCC--ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743 121 ---YEAPFSSLAFIDDD---WI-LT-AGTSNGRVVFYDIRGKPQ--PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (633)
Q Consensus 121 ---h~~~ItsLafSPdG---~~-La-tGs~DGsV~IWDlrs~~k--~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd 190 (633)
....+..+.|..|+ .+ ++ ....-+.|+.||+..... ..+..+...-...|++++.+.+|++++.+
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG----- 299 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG----- 299 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe-----
Confidence 34456777888776 22 22 233345677766653221 11111112334679999999987777665
Q ss_pred CeEEEEeeCCCeEEccCCC
Q 006743 191 ETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 191 ~~lLlSgs~Dg~IkIWDlr 209 (633)
+.||.|-|++..
T Consensus 300 -------T~dGsVai~~~~ 311 (398)
T KOG0771|consen 300 -------TMDGSVAIYDAK 311 (398)
T ss_pred -------ccCCcEEEEEec
Confidence 456666666654
No 232
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.02 E-value=5.8e-08 Score=105.70 Aligned_cols=160 Identities=13% Similarity=0.157 Sum_probs=110.4
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC---CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCC
Q 006743 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD---GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD 93 (633)
Q Consensus 17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D---GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg 93 (633)
.|.++|.. +.....+.. +...+...+|+|+++. |+.+..+ ..|++||+.++.. ..+..+...+.+++|+||+
T Consensus 171 ~l~~~d~~-g~~~~~l~~-~~~~~~~p~~Spdg~~-la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 171 ELQVADYD-GANPQTITR-SREPILSPAWSPDGQK-LAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred eEEEEcCC-CCCCEEeec-CCCceecccCCCCCCE-EEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCC
Confidence 58888874 444444544 3445667899999984 5544432 4799999988762 3344566677889999999
Q ss_pred CEEEEE-eCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC-C--eEEEEECCCCCCceEEEeecCCC
Q 006743 94 KIIASV-GLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFYDIRGKPQPLTVLRACSSS 167 (633)
Q Consensus 94 ~~LaSg-S~DG--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D-G--sV~IWDlrs~~k~v~~l~~~~H~ 167 (633)
+.|+.. +.++ .|++||+.+++......+.......+|+|||++|+..+.. + .|++||+.+.+ ...+. .+.
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~--~~~ 321 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRRLT--FRG 321 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEee--cCC
Confidence 877654 4444 6999999988765555555555678999999988876543 3 58888887653 22232 345
Q ss_pred CCeeEEEEccCCCeEEEe
Q 006743 168 EAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 168 ~~VtsLafsPdg~~Las~ 185 (633)
..+..+.|+|+|++++..
T Consensus 322 ~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFV 339 (417)
T ss_pred CCccCeEECCCCCEEEEE
Confidence 667788999988777665
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=3.4e-08 Score=109.19 Aligned_cols=177 Identities=10% Similarity=0.065 Sum_probs=111.2
Q ss_pred CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCC
Q 006743 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD 93 (633)
Q Consensus 16 G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D--GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg 93 (633)
..|.++|. ++.....+.. +...+...+|+|+|+.++++...+ ..|++||+.+++. ..+....+.+.+.+|+||+
T Consensus 176 ~~L~~~D~-dG~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALS-SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECC-CCCCceEecc-CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCC
Confidence 36777786 4555455543 445677799999998444443333 4699999988763 3344444567789999999
Q ss_pred CEEE-EEeCCCeEE--EEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc-CCeEEEEEC--CCCCCceEEEeecCCC
Q 006743 94 KIIA-SVGLDKKLY--TYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDI--RGKPQPLTVLRACSSS 167 (633)
Q Consensus 94 ~~La-SgS~DGtVr--IWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~-DGsV~IWDl--rs~~k~v~~l~~~~H~ 167 (633)
+.|+ +.+.++... ++|+..+.......+........|+|||+.|+..+. +|...||.+ .++. ...+.. +.
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--~~~lt~--~g 327 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--AQRVTF--TG 327 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--eEEEec--CC
Confidence 9886 456777644 455655554443344555677899999998886554 455566654 4432 222221 22
Q ss_pred CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 168 ~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
......+|+|+|++|+...... .+..|.+||+.
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~---------g~~~I~v~d~~ 360 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVG---------GAFKLYVQDLA 360 (427)
T ss_pred CCcCceEECCCCCEEEEEEccC---------CcEEEEEEECC
Confidence 3345688999998887652211 12357777764
No 234
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=1.1e-07 Score=105.18 Aligned_cols=191 Identities=15% Similarity=0.096 Sum_probs=126.0
Q ss_pred CccCCCCE-EEEEEC---CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCcee
Q 006743 1 MYNCKDEH-LASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKV 74 (633)
Q Consensus 1 AFSpdG~~-LaSgs~---DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D--GtI~IWDl~t~~~~v 74 (633)
.|+|||+. ++..+. +..|+++|+.+++...... ....+....|+|||+.++++.+.+ ..|+++|+.++. .
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~--~ 269 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT--L 269 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc--E
Confidence 48999985 654443 3569999998887654443 334455678999998777776655 468888887776 3
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC--------
Q 006743 75 SWLKQHSAPTAGISFSSDDKIIASVGLD-K--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-------- 143 (633)
Q Consensus 75 ~~l~~H~~~VtsLafSPdg~~LaSgS~D-G--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D-------- 143 (633)
..+..+........|+|||+.|+..+.. + .|+++|+.+++..+....... ...|+|||++|+.....
T Consensus 270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~ 347 (419)
T PRK04043 270 TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKN 347 (419)
T ss_pred EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCC
Confidence 4444444434556899999988777643 2 689999988776554432222 24899999998876643
Q ss_pred -CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCe
Q 006743 144 -GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDS 202 (633)
Q Consensus 144 -GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~ 202 (633)
..|++.|+.++. .+.+.. ........|+|||+.|+......+...|..-..|+.
T Consensus 348 ~~~I~v~d~~~g~--~~~LT~---~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 348 TFNLYLISTNSDY--IRRLTA---NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CcEEEEEECCCCC--eEECCC---CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 368888988763 233332 223446899999998877654444444444444443
No 235
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=2.5e-08 Score=110.51 Aligned_cols=174 Identities=18% Similarity=0.204 Sum_probs=112.0
Q ss_pred CccCCCCEEEEEEC-CC--cEE--EEECCCC--ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE--ECCCCC
Q 006743 1 MYNCKDEHLASISL-SG--DLI--LHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRS 71 (633)
Q Consensus 1 AFSpdG~~LaSgs~-DG--~I~--IWDl~tg--k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IW--Dl~t~~ 71 (633)
+|+|||++|+.... +| .++ +|++..+ .....+...........+|+|||+.++++...+|...|| ++....
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 48999998887653 23 344 4676543 222333322223334579999999656666567755555 443222
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc---CCe
Q 006743 72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---NGR 145 (633)
Q Consensus 72 ~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D---GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~---DGs 145 (633)
.....+..+...+....|+|||++|+..+.+ ..|++||+.+++..........+....|+|||++|+.... ...
T Consensus 317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~ 396 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE 396 (428)
T ss_pred cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce
Confidence 1234455555677889999999999877654 3799999998887655444456788999999998875443 356
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 006743 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA 178 (633)
Q Consensus 146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPd 178 (633)
|++||+.+++ . ..+. ...+.+...+|+|-
T Consensus 397 L~~vdl~~g~-~-~~Lt--~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 397 LYLISLITKK-T-RKIV--IGSGEKRFPSWGAF 425 (428)
T ss_pred EEEEECCCCC-E-EEee--cCCCcccCceecCC
Confidence 8899998763 2 2222 23455677888773
No 236
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=2.8e-08 Score=104.39 Aligned_cols=206 Identities=13% Similarity=0.171 Sum_probs=132.6
Q ss_pred CccCCCC-EEEEEECCCcEEEEECCCC----c--------eeEEEeCCCCCcEEEEEEccCCCeEEEEEe-CCCeEEEEE
Q 006743 1 MYNCKDE-HLASISLSGDLILHNLASG----A--------KAAELKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWD 66 (633)
Q Consensus 1 AFSpdG~-~LaSgs~DG~I~IWDl~tg----k--------~v~~~~~~~~~~VssLafSpdg~~lLaSGs-~DGtI~IWD 66 (633)
||-|.+. .|++|+. +-|.||..... . ....++......|+.+.|++||. .+++++ .|..|.|||
T Consensus 147 awRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt-~l~tAS~gsssi~iWd 224 (445)
T KOG2139|consen 147 AWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGT-ILVTASFGSSSIMIWD 224 (445)
T ss_pred EeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCC-EEeecccCcceEEEEc
Confidence 4666654 5666664 45899976421 1 11223333346789999999998 666666 577899999
Q ss_pred CCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743 67 TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP-GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGR 145 (633)
Q Consensus 67 l~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl-rtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGs 145 (633)
..++... .......+.+.-+.|+||+.+|+.+.-|+..++|.. ++....+..-..+.|...+|+|+|.+|+.... |.
T Consensus 225 pdtg~~~-pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gs 302 (445)
T KOG2139|consen 225 PDTGQKI-PLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GS 302 (445)
T ss_pred CCCCCcc-cccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CC
Confidence 9887743 222344577889999999999999999999999954 44455555555669999999999988775543 22
Q ss_pred EEEEECCCCCCc-----------eEEEee------c----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006743 146 VVFYDIRGKPQP-----------LTVLRA------C----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (633)
Q Consensus 146 V~IWDlrs~~k~-----------v~~l~~------~----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~Ik 204 (633)
-++|.+.-..++ +..+.. . -..+.+.+++|+|.|.+++.... +...+.. ....|.
T Consensus 303 p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK--g~~~v~~--~k~~i~ 378 (445)
T KOG2139|consen 303 PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK--GQSFVLL--CKLHIS 378 (445)
T ss_pred ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc--CCchhhh--hhhhhh
Confidence 334433211110 000000 0 12577899999999999987622 2221111 135677
Q ss_pred ccCCCCCCCC
Q 006743 205 MPDPLPSVTT 214 (633)
Q Consensus 205 IWDlr~~~~~ 214 (633)
+||.+...+.
T Consensus 379 ~fdtr~sp~v 388 (445)
T KOG2139|consen 379 RFDTRKSPPV 388 (445)
T ss_pred hhcccccCce
Confidence 8888765553
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.95 E-value=1.9e-07 Score=101.70 Aligned_cols=196 Identities=15% Similarity=0.146 Sum_probs=127.6
Q ss_pred CEEE-EEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743 7 EHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (633)
Q Consensus 7 ~~La-Sgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt 85 (633)
++++ +-..+|.|.|.|..+.+.+..+.... ..-..++|++|++ ++++++.||.|.++|+.+.+. +..+... ....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~-v~~i~~G-~~~~ 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKV-VATIKVG-GNPR 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSE-EEEEE-S-SEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCC-EEEEEcCCCeEEEEECCcccE-EEEEecC-CCcc
Confidence 4454 45568999999999999999998533 3333478999998 677778999999999999884 5555544 4578
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEeeC--------CCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCC
Q 006743 86 GISFSSDDKIIASVG-LDKKLYTYDPGSRRPSSCITY--------EAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKP 155 (633)
Q Consensus 86 sLafSPdg~~LaSgS-~DGtVrIWDlrtgk~v~~i~h--------~~~ItsLafSPdG~~LatGs~-DGsV~IWDlrs~~ 155 (633)
++++++||+++++++ .++.+.++|.++.+++..+.. +..+..+..+|....++..-. .+.|.+.|.....
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 899999999988776 688999999999998887742 346778888888885555555 5889999987763
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
.... .............|+|+++|++.+....+...++.......+.+.|.
T Consensus 162 ~~~~--~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 162 NLKV--TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp CEEE--EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred ccce--eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeec
Confidence 3221 22234566788999999988766544444333333333334444444
No 238
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=4.4e-09 Score=115.29 Aligned_cols=119 Identities=19% Similarity=0.317 Sum_probs=99.6
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 006743 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT 107 (633)
Q Consensus 35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~-------~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrI 107 (633)
.|.+.|+++.|.+... .|++++.||+|++|.+... ...+..+++|.++|.|+++.+++.++++|+-||+|+.
T Consensus 292 s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 3667788899998887 7999999999999999321 1236789999999999999999999999999999999
Q ss_pred EeCC------CCc---ee--eEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743 108 YDPG------SRR---PS--SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 108 WDlr------tgk---~v--~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~ 154 (633)
|++- +.- .+ ...+|.+.++.++++.....|++++.||+|++|+....
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence 9553 111 11 23379999999999999999999999999999998765
No 239
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=8e-09 Score=119.73 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=120.7
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~ 82 (633)
+++.-++++|+.-+.|.+|+......-..+.+ |.+.+..+.|+-+|+ ++++.++|.++++|++++.+.......+|..
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~G-HeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKG-HEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccCCcceecc-cCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccc
Confidence 44455788899999999999873222223555 666777799999998 8999999999999999988865556789999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743 83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h-~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~ 154 (633)
.|..++|.|+ ++++++.|.++++|+....+......| ...|..++..++..++++++.|+.+++||+.+.
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999987 999999999999997664444322234 567999999999999999999999999998764
No 240
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.91 E-value=5.7e-10 Score=126.22 Aligned_cols=116 Identities=14% Similarity=0.198 Sum_probs=105.1
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
+.+.+|...|+|+.|...|.+|++|++|..|+||.+.++.+.... +|.+.|+.++.+.++.++++++.|..|++|.+..
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 346789999999999999999999999999999999999888777 7999999999999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 154 ~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
+ .++.++. +|.+.|++|+|+|- .+.+.||++++||.|
T Consensus 264 ~-~pvsvLr--ghtgavtaiafsP~----------------~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 264 G-APVSVLR--GHTGAVTAIAFSPR----------------ASSSDDGTCRIWDAR 300 (1113)
T ss_pred C-chHHHHh--ccccceeeeccCcc----------------ccCCCCCceEecccc
Confidence 7 5677777 89999999999993 255679999999988
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=3.5e-07 Score=100.74 Aligned_cols=161 Identities=11% Similarity=0.100 Sum_probs=107.7
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 006743 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK 94 (633)
Q Consensus 17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D--GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~ 94 (633)
.|.++|...+. ...+.. +...+....|+|+|+.++++...+ ..|++||+.++.. ..+....+.+...+|+|||+
T Consensus 180 ~l~~~d~~g~~-~~~l~~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQ-SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCC-ceEEec-CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCC
Confidence 47788875443 344443 345667789999998544444333 3699999987763 33444445566799999999
Q ss_pred EEEE-EeCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 006743 95 IIAS-VGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE 168 (633)
Q Consensus 95 ~LaS-gS~DG--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~-DG--sV~IWDlrs~~k~v~~l~~~~H~~ 168 (633)
.|+. ...++ .|++||+.+++......+........|+|||+.|+..+. +| .|++||+.+++ . ..+.. ...
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~-~~lt~--~~~ 331 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-A-ERVTF--VGN 331 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-E-EEeec--CCC
Confidence 8874 44444 689999998876655455556677899999998876654 33 58888887663 2 22221 122
Q ss_pred CeeEEEEccCCCeEEEe
Q 006743 169 AVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 169 ~VtsLafsPdg~~Las~ 185 (633)
......|+|+|++|+..
T Consensus 332 ~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 332 YNARPRLSADGKTLVMV 348 (430)
T ss_pred CccceEECCCCCEEEEE
Confidence 34467899998887765
No 242
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=3.4e-08 Score=108.56 Aligned_cols=166 Identities=17% Similarity=0.302 Sum_probs=125.8
Q ss_pred EEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-----EEeccCCC-
Q 006743 9 LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-----SWLKQHSA- 82 (633)
Q Consensus 9 LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v-----~~l~~H~~- 82 (633)
|+.++....|+-+|++.|+-+..+.. ....+++|..++... +|++|+.+|.|..||.+.....- ..+..|.+
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred EEEeecCcceEEEEcccccccccccc-ccccceeeeecCccc-eEEecccCceEEEecchhhhhheeeecccccCCCccc
Confidence 44555667899999999998888774 456788899999877 89999999999999997665321 11223333
Q ss_pred ----CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC--CCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCC
Q 006743 83 ----PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--EAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 83 ----~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h--~~~ItsLafSPd--G~~LatGs~DGsV~IWDlrs~ 154 (633)
.|+++.|+.+|-.+++|..+|.|.|||+|+.+++..-.| .-+|..+.|.+. ...|++ .....++|||-.++
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTG 304 (703)
T ss_pred cccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccC
Confidence 499999998899999999999999999999998877654 567899999875 344444 44577999999988
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCe
Q 006743 155 PQPLTVLRACSSSEAVSSLCWQRAKPV 181 (633)
Q Consensus 155 ~k~v~~l~~~~H~~~VtsLafsPdg~~ 181 (633)
+ +...+. ....+..+|+-|++-.
T Consensus 305 k-~~asiE---pt~~lND~C~~p~sGm 327 (703)
T KOG2321|consen 305 K-PMASIE---PTSDLNDFCFVPGSGM 327 (703)
T ss_pred C-ceeecc---ccCCcCceeeecCCce
Confidence 3 333333 4556888998885433
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=2.5e-07 Score=103.07 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=106.0
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 006743 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK 94 (633)
Q Consensus 17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~ 94 (633)
.|.++|..... .+.+.. ....+....|+|+|+.++++...++ .|++||+.+++. ..+..........+|+||++
T Consensus 199 ~l~i~d~dG~~-~~~l~~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLR-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCC-ceEeec-CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCC
Confidence 57777864433 333433 3456677899999985555544444 588899987763 23333334455789999999
Q ss_pred EEEE-EeCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 006743 95 IIAS-VGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE 168 (633)
Q Consensus 95 ~LaS-gS~DG--tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~-DG--sV~IWDlrs~~k~v~~l~~~~H~~ 168 (633)
.|+. .+.++ .|++||+.+++......+.......+|+|||++|+..+. ++ .|+++|+.+++ ...+.. ...
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~--~g~ 350 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLTF--EGE 350 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEec--CCC
Confidence 8875 45556 488889988876655555556778899999998876654 33 47777887653 222321 222
Q ss_pred CeeEEEEccCCCeEEEe
Q 006743 169 AVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 169 ~VtsLafsPdg~~Las~ 185 (633)
.....+|+|+|++|+..
T Consensus 351 ~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 351 QNLGGSITPDGRSMIMV 367 (448)
T ss_pred CCcCeeECCCCCEEEEE
Confidence 34557899998887665
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.88 E-value=2.3e-08 Score=102.73 Aligned_cols=182 Identities=17% Similarity=0.135 Sum_probs=126.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce--eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEEec
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSWLK 78 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~--v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-~~v~~l~ 78 (633)
|++.+..+++...+|.+.+-+...... ++..+. |.-.+...+|+....+++++|++|+.+..||++..+ ..-+..+
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k 207 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK 207 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce
Confidence 566778888888899988665444332 235555 444455578988877899999999999999998333 3334466
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-CceeeEeeCCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCC
Q 006743 79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS-RRPSSCITYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 79 ~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrt-gk~v~~i~h~~~ItsLafSPd--G~~LatGs~DGsV~IWDlrs~ 154 (633)
.|...|.+|.-+| .+.+|++|+.|..|++||.|+ ++++..-...+.|..++++|. +..|+++-.+| .+|-++...
T Consensus 208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK 286 (339)
T ss_pred eeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence 7899999999988 889999999999999999994 778777777899999999994 33444444444 666666554
Q ss_pred CCceE-EE-eecCCCCCeeEEEEccCCCeEEEe
Q 006743 155 PQPLT-VL-RACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 155 ~k~v~-~l-~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
...+. .+ ....|.+-++.-.|.....++++|
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred ccchheeeeccccccceeeccccccccceeeee
Confidence 22211 11 112566666666664433444444
No 245
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.88 E-value=5.3e-09 Score=125.90 Aligned_cols=185 Identities=14% Similarity=0.218 Sum_probs=145.6
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~ 82 (633)
+|...+.++|+.||.|++|....++.+..+.......|+.+.|+.+|. .+..+..||.+.+|.+... .....+.|+.
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~pk--~~~s~qchnk 2293 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQASPK--PYTSWQCHNK 2293 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-ceeeeccCCceeecccCCc--ceeccccCCc
Confidence 455678899999999999999999888887754557788899999998 7889999999999999833 3667789999
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCce--eeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743 83 PTAGISFSSDDKIIASVG---LDKKLYTYDPGSRRP--SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (633)
Q Consensus 83 ~VtsLafSPdg~~LaSgS---~DGtVrIWDlrtgk~--v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~ 157 (633)
...+++|-. ..+++++ .++.+.+||.--... .....|.+.++++++.|.-..|++|+.+|.|++||++..+ .
T Consensus 2294 ~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq-l 2370 (2439)
T KOG1064|consen 2294 ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ-L 2370 (2439)
T ss_pred cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH-H
Confidence 999999984 6677765 567899999754322 2224799999999999999999999999999999999762 2
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (633)
Q Consensus 158 v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~ 217 (633)
.+.+. . ++ ...++++++..|.++||++..+.-..+.
T Consensus 2371 ~h~~~-------~----~~-------------~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2371 RHTFQ-------A----LD-------------TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred HHHhh-------h----hh-------------hhheeeccCcccceEEEEccccchhhcC
Confidence 22222 1 11 4567888889999999999766444443
No 246
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=9.1e-08 Score=109.53 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=118.6
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCcee---EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC---CCceeE
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKA---AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG---RSPKVS 75 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v---~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t---~~~~v~ 75 (633)
+++.|++.+.. .+..+.+|+...+... .....+|...++|++++|+++ ++++|..||.|.+|.--+ .....+
T Consensus 168 ~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 168 DNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccce
Confidence 34455544433 4556888888765421 122234666689999999998 899999999999997533 222356
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
.+.=|...|++++|+++|.+|++|+..|.+.+|.+.+++....-...++|..+.++||+.+.++...|..|++....+
T Consensus 246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred EEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 677799999999999999999999999999999999998554446889999999999999999999999999987754
No 247
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.86 E-value=3e-08 Score=116.45 Aligned_cols=182 Identities=18% Similarity=0.149 Sum_probs=124.3
Q ss_pred EECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------eEEeccCCCCeEEEEEcCCCC
Q 006743 21 HNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------VSWLKQHSAPTAGISFSSDDK 94 (633)
Q Consensus 21 WDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~------v~~l~~H~~~VtsLafSPdg~ 94 (633)
|++ .|..+..+..|... +..++.++....+|++|+.||+|++||++.-... ..++......+.++...+.+.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~-v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSA-VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCc-cceEeehhhhcccc-ccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 554 56677777654444 4467777666449999999999999998543211 122333567899999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCc--e-----eeEee--CCCCeEE-EEEec-CCC-EEEEEEcCCeEEEEECCCCCCceEEEe
Q 006743 95 IIASVGLDKKLYTYDPGSRR--P-----SSCIT--YEAPFSS-LAFID-DDW-ILTAGTSNGRVVFYDIRGKPQPLTVLR 162 (633)
Q Consensus 95 ~LaSgS~DGtVrIWDlrtgk--~-----v~~i~--h~~~Its-LafSP-dG~-~LatGs~DGsV~IWDlrs~~k~v~~l~ 162 (633)
.+|+++.||.|++.++.... . .+... ..+.+.+ -++.. .+. .|+.+...+.|..||+++.... ..++
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-w~lk 1190 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-WRLK 1190 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-Hhhh
Confidence 99999999999999987521 1 11111 2233333 33333 233 7888999999999999986432 3333
Q ss_pred ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743 163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (633)
Q Consensus 163 ~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~ 217 (633)
.....|.|++++.+|.+. .++.|...|.+.+||+|-..+..+-
T Consensus 1191 ~~~~hG~vTSi~idp~~~------------WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCN------------WLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred cCccccceeEEEecCCce------------EEEEecCCceEEEEEeecCceeecc
Confidence 334568899999999544 4555577889999999977665443
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.79 E-value=4.8e-06 Score=89.54 Aligned_cols=198 Identities=13% Similarity=0.168 Sum_probs=126.6
Q ss_pred CccCCCCEEEEEEC-CCcEEEEECCC-CceeEE---Ee---------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 006743 1 MYNCKDEHLASISL-SGDLILHNLAS-GAKAAE---LK---------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66 (633)
Q Consensus 1 AFSpdG~~LaSgs~-DG~I~IWDl~t-gk~v~~---~~---------~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWD 66 (633)
++++++++|+++.. +|.|.++++.. +..... +. ........++.|+|+++.++++.-....|++|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 36789999999874 89999999986 433222 21 012345678999999996665555567899999
Q ss_pred CCCCCcee---EE-eccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCC--CCcee--eEee-------CCCCeEEEEE
Q 006743 67 TTGRSPKV---SW-LKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPG--SRRPS--SCIT-------YEAPFSSLAF 130 (633)
Q Consensus 67 l~t~~~~v---~~-l~~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlr--tgk~v--~~i~-------h~~~ItsLaf 130 (633)
+......+ .. -......-+.++|+|+++++++.. .++.|.+|++. ++... ..+. .......+++
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i 252 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI 252 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE
Confidence 97655211 11 123445678999999999886665 56789999887 44322 2221 1225889999
Q ss_pred ecCCCEEEEEEc-CCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 131 IDDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 131 SPdG~~LatGs~-DGsV~IWDlrs~~k~v~~l~~~-~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
+|||++|+++.. ++.|.+|++......+..+... ........++++|+|++|+.+ +..++.|.+|++
T Consensus 253 spdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va-----------~~~s~~v~vf~~ 321 (345)
T PF10282_consen 253 SPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA-----------NQDSNTVSVFDI 321 (345)
T ss_dssp -TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE-----------ETTTTEEEEEEE
T ss_pred ecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE-----------ecCCCeEEEEEE
Confidence 999999988764 6789999995432223333322 224458899999987776554 334556666655
Q ss_pred C
Q 006743 209 L 209 (633)
Q Consensus 209 r 209 (633)
.
T Consensus 322 d 322 (345)
T PF10282_consen 322 D 322 (345)
T ss_dssp E
T ss_pred e
Confidence 3
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.78 E-value=1.4e-07 Score=97.06 Aligned_cols=167 Identities=16% Similarity=0.108 Sum_probs=122.3
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEeCCCC---C--cEEEEEEccCCCeEEEEEeCCCeEEEEE-CCCCCceeEEeccCC
Q 006743 8 HLASISLSGDLILHNLASGAKAAELKDPNE---Q--VLRVLDYSRNSRHLLVTAGDDGTLHLWD-TTGRSPKVSWLKQHS 81 (633)
Q Consensus 8 ~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~---~--~VssLafSpdg~~lLaSGs~DGtI~IWD-l~t~~~~v~~l~~H~ 81 (633)
.++-+..+|.|.+|..........+.+-.. . ..-++.|++.+. -++++..+|.+.+-+ .+..-..++.++.|.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He 165 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHE 165 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccc
Confidence 455566678888887644333333332111 1 123478888887 588888889988443 333333456889999
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-eeeE--eeCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCC
Q 006743 82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSC--ITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQ 156 (633)
Q Consensus 82 ~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk-~v~~--i~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~k 156 (633)
-+++-..|+. +.+++++|++|+.+..||+|..+ .+.. ..|...|.++.-+| .+.+|++|+.|-.|++||.|+..+
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 9999999988 77899999999999999999433 2222 24788899998887 688999999999999999998777
Q ss_pred ceEEEeecCCCCCeeEEEEccC
Q 006743 157 PLTVLRACSSSEAVSSLCWQRA 178 (633)
Q Consensus 157 ~v~~l~~~~H~~~VtsLafsPd 178 (633)
|+..-. -.+.|+.+.++|.
T Consensus 246 Pl~~~~---v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 246 PLFKAK---VGGGVWRIKHHPE 264 (339)
T ss_pred ccccCc---cccceEEEEecch
Confidence 765443 4588999999995
No 250
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.77 E-value=1.3e-06 Score=95.18 Aligned_cols=209 Identities=13% Similarity=0.111 Sum_probs=129.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ- 79 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~- 79 (633)
+|++||+++++++.||.|.++|+.+++.+.+++. +.....++++++|+.+++++..++.+.|+|.++.+. ++.+..
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~ 119 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTG 119 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccc
Confidence 3789999999999999999999999999999984 345677999999996666667899999999998874 343332
Q ss_pred ------CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcee--eEeeCCCCeEEEEEecCCCEEEEE-EcCCeEEEE
Q 006743 80 ------HSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPS--SCITYEAPFSSLAFIDDDWILTAG-TSNGRVVFY 149 (633)
Q Consensus 80 ------H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrtgk~v--~~i~h~~~ItsLafSPdG~~LatG-s~DGsV~IW 149 (633)
....+..+..+|....++..- +.+.|.+.|....+.. ..+..........|+|++++++++ ..+..|-++
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi 199 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI 199 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence 234678888888777555554 4588999998776543 344566778899999999987765 557789999
Q ss_pred ECCCCCCceEEEee--cCCCCCeeEEEEccC-CCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743 150 DIRGKPQPLTVLRA--CSSSEAVSSLCWQRA-KPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (633)
Q Consensus 150 Dlrs~~k~v~~l~~--~~H~~~VtsLafsPd-g~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~ 217 (633)
|.++.+ .+..+.. ..|..++..+- +|. |.+..... .+...++.-..+.+.+||..........
T Consensus 200 D~~~~k-~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~---~~~~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 200 DTKTGK-LVALIDTGKKPHPGPGANFP-HPGFGPVWATSG---LGYFAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp ETTTTE-EEEEEE-SSSBEETTEEEEE-ETTTEEEEEEEB---SSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred eeccce-EEEEeecccccccccccccc-CCCcceEEeecc---ccceecccccCCccccchhhcCeEEEEE
Confidence 998863 2333321 13455555543 443 22222221 1122222222345566777665554443
No 251
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3e-07 Score=101.22 Aligned_cols=179 Identities=16% Similarity=0.220 Sum_probs=121.6
Q ss_pred ECCCcEEEEECCCCce-----eEEEeCCCCCcEEEEEEccCCCeEEEEEeC--CC---------eEEEEECCCCCceeEE
Q 006743 13 SLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSRHLLVTAGD--DG---------TLHLWDTTGRSPKVSW 76 (633)
Q Consensus 13 s~DG~I~IWDl~tgk~-----v~~~~~~~~~~VssLafSpdg~~lLaSGs~--DG---------tI~IWDl~t~~~~v~~ 76 (633)
|.-+.|+||....... .+.|- ..+.|. +.|++.|.-+|+.++. |+ +++++++.+..+ ..
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFF--kadkvq-m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~--~V 265 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFF--KADKVQ-MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV--SV 265 (566)
T ss_pred CCCcEEEEeccccccccchhhhcccc--ccceeE-EEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE--EE
Confidence 3445688887642211 11221 234555 7899988766665543 33 688888885553 22
Q ss_pred eccCCCCeEEEEEcCCCCEEEE--EeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC---CeEEEEEC
Q 006743 77 LKQHSAPTAGISFSSDDKIIAS--VGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFYDI 151 (633)
Q Consensus 77 l~~H~~~VtsLafSPdg~~LaS--gS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D---GsV~IWDl 151 (633)
-....++|+++.|+++++.|++ |-+-.++.|||++ +.++..+ .+++=+++-|+|.|++|+.++.+ |.|-|||+
T Consensus 266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 3345789999999999976655 4566789999987 4555444 46778889999999999988764 78999999
Q ss_pred CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 152 rs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
.+.+ .+..+. ...-+-+.|+|||++++++.....-. .|+.++||+..
T Consensus 344 ~n~K-~i~~~~----a~~tt~~eW~PdGe~flTATTaPRlr------vdNg~Kiwhyt 390 (566)
T KOG2315|consen 344 PNRK-LIAKFK----AANTTVFEWSPDGEYFLTATTAPRLR------VDNGIKIWHYT 390 (566)
T ss_pred cchh-hccccc----cCCceEEEEcCCCcEEEEEeccccEE------ecCCeEEEEec
Confidence 9863 333333 23456789999999988873322222 28999999873
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.75 E-value=1.9e-07 Score=97.67 Aligned_cols=197 Identities=14% Similarity=0.200 Sum_probs=132.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc-----eeEEEeCCC-----------CCcEEEEEEccCCC-eEEEEEeCCCeEEE
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGA-----KAAELKDPN-----------EQVLRVLDYSRNSR-HLLVTAGDDGTLHL 64 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk-----~v~~~~~~~-----------~~~VssLafSpdg~-~lLaSGs~DGtI~I 64 (633)
|+..|++||+|+.+|.|.+|.-.... ....++.|. .+.|..+.|.+++. ..++....|++|++
T Consensus 33 f~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKl 112 (433)
T KOG1354|consen 33 FDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKL 112 (433)
T ss_pred eecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceee
Confidence 67889999999999999999754322 122232221 23577789987653 35667788999999
Q ss_pred EECCCCCce-----------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 006743 65 WDTTGRSPK-----------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109 (633)
Q Consensus 65 WDl~t~~~~-----------------------------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWD 109 (633)
|.+...... ...-..|...|+++.++.|+..++++. |=.|.+|+
T Consensus 113 WKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWn 191 (433)
T KOG1354|consen 113 WKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWN 191 (433)
T ss_pred eeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeeecc
Confidence 988432211 011246788899999999988888766 66799999
Q ss_pred CCC-CceeeEee--------CCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCce---EEEeec----------CC
Q 006743 110 PGS-RRPSSCIT--------YEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPL---TVLRAC----------SS 166 (633)
Q Consensus 110 lrt-gk~v~~i~--------h~~~ItsLafSPd-G~~LatGs~DGsV~IWDlrs~~k~v---~~l~~~----------~H 166 (633)
+.- .+...+.. ....|++..|+|. .++++-.+..|.|++.|+|...-+- +.+..+ +-
T Consensus 192 lei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffsei 271 (433)
T KOG1354|consen 192 LEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI 271 (433)
T ss_pred ccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHH
Confidence 873 33333332 2345889999995 5677888889999999999532111 111111 11
Q ss_pred CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 167 ~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
-..|..+.|+++|+|+++- .=-+|++||+.+..
T Consensus 272 IsSISDvKFs~sGryilsR-------------Dyltvk~wD~nme~ 304 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSR-------------DYLTVKLWDLNMEA 304 (433)
T ss_pred hhhhhceEEccCCcEEEEe-------------ccceeEEEeccccC
Confidence 2457889999988888764 12689999995433
No 253
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.73 E-value=7e-06 Score=88.29 Aligned_cols=197 Identities=14% Similarity=0.131 Sum_probs=126.0
Q ss_pred CccCCCCEEEEEEC----CCcEEEEECCCC--c--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743 1 MYNCKDEHLASISL----SGDLILHNLASG--A--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (633)
Q Consensus 1 AFSpdG~~LaSgs~----DG~I~IWDl~tg--k--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~ 72 (633)
++++++++|++... +|.|..|++... + .+..... .......++++|+++.++++--.+|.|.+|++.....
T Consensus 43 ~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 43 AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 46889999998876 578999988654 3 2333331 2333445899999995555555699999999976432
Q ss_pred eeEE--ec-----------cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCc--eee----EeeCCCCeEEEEEec
Q 006743 73 KVSW--LK-----------QHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRR--PSS----CITYEAPFSSLAFID 132 (633)
Q Consensus 73 ~v~~--l~-----------~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlrtgk--~v~----~i~h~~~ItsLafSP 132 (633)
.... .. .......++.|+|+++++++... ...|++|++.... ... .+........++|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 2111 11 22356789999999998888753 3479999987654 322 224667799999999
Q ss_pred CCCEEEEEEc-CCeEEEEECCCCCCceEEEe---ec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006743 133 DDWILTAGTS-NGRVVFYDIRGKPQPLTVLR---AC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (633)
Q Consensus 133 dG~~LatGs~-DGsV~IWDlrs~~k~v~~l~---~~----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~Ik 204 (633)
+++++.+.++ ++.|.+|++......+..+. .. ........|+++|+|++|... ...++.|.
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs-----------nr~~~sI~ 270 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS-----------NRGSNSIS 270 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE-----------ECTTTEEE
T ss_pred CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE-----------eccCCEEE
Confidence 9998876654 78899999883222222222 11 112257889999988776554 33366666
Q ss_pred ccCCC
Q 006743 205 MPDPL 209 (633)
Q Consensus 205 IWDlr 209 (633)
+|++.
T Consensus 271 vf~~d 275 (345)
T PF10282_consen 271 VFDLD 275 (345)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77663
No 254
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.72 E-value=8e-07 Score=90.62 Aligned_cols=198 Identities=16% Similarity=0.137 Sum_probs=131.7
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V 84 (633)
+..+||.|+..|...+|.+.+.+....+...+...|..+.=.-+...-+..++.|.++++.+++............ -.+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~-~~~ 161 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN-LTQ 161 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-cce
Confidence 3458899999999999999876644333322322222221111222247788999999999987665322221111 238
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eee--EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSS--CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (633)
Q Consensus 85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk--~v~--~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~ 160 (633)
..+++++|+++++++++...|-.|.+.... .+. .....+.-.+..|+.....+|++..||++.|||+|....+...
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 899999999999999999999999887532 222 1134566678889999999999999999999999986544433
Q ss_pred E--eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 161 L--RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 161 l--~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
. ....|.+.+..+.|++.|.. ..++++ ..-+.+.+-|+|.+..
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~l---------DLLf~s-Ehfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLL---------DLLFIS-EHFSRVHVVDTRNYVN 286 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcc---------eEEEEe-cCcceEEEEEcccCce
Confidence 2 23468999999999984422 222222 2245566666665543
No 255
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.67 E-value=2.8e-06 Score=92.09 Aligned_cols=170 Identities=13% Similarity=0.153 Sum_probs=132.4
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEeccCCCC
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLKQHSAP 83 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG-tI~IWDl~t~~~~v~~l~~H~~~ 83 (633)
+|++++..+ .|...|.+...+-.++ ..+...|+=..+.-+++ -++.|..|| .+-|||..+++ +..+...-+.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~ 403 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGN 403 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEE---cCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCce--EEEeeCCccc
Confidence 578888776 5677888766554433 23555577677777776 688999999 89999999988 5666777789
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCC----eEEEEECCCCCCce
Q 006743 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNG----RVVFYDIRGKPQPL 158 (633)
Q Consensus 84 VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DG----sV~IWDlrs~~k~v 158 (633)
|.++..+++|++++.+.....|.++|+.+++....- ...+-|+..+|+|++++||-+--+| .|++||+.+.
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~---- 479 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG---- 479 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC----
Confidence 999999999999999999999999999999875444 4677899999999999999887666 4899999987
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
+++........=.+-+|+|++++|..-
T Consensus 480 Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 480 KIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred eEEEecCCcccccCcccCCCCcEEEEE
Confidence 233322344455678899999888643
No 256
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.65 E-value=4.7e-06 Score=101.83 Aligned_cols=194 Identities=13% Similarity=0.066 Sum_probs=124.2
Q ss_pred CccCCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCC----------------CCcEEEEEEccCCCeEEEEEeCCCeEE
Q 006743 1 MYNCKDEHLASISL-SGDLILHNLASGAKAAELKDPN----------------EQVLRVLDYSRNSRHLLVTAGDDGTLH 63 (633)
Q Consensus 1 AFSpdG~~LaSgs~-DG~I~IWDl~tgk~v~~~~~~~----------------~~~VssLafSpdg~~lLaSGs~DGtI~ 63 (633)
+|+++++.|+++.. ++.|+++|+.++. +..+.+.. ...-..|+|+|++..++++...++.|+
T Consensus 630 avd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~ 708 (1057)
T PLN02919 630 AYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIW 708 (1057)
T ss_pred EEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEE
Confidence 35667777666654 4678889986654 33332100 012246899996555788888899999
Q ss_pred EEECCCCCceeEEecc---------------CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeeEee-------
Q 006743 64 LWDTTGRSPKVSWLKQ---------------HSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT------- 120 (633)
Q Consensus 64 IWDl~t~~~~v~~l~~---------------H~~~VtsLafSPdg~~L-aSgS~DGtVrIWDlrtgk~v~~i~------- 120 (633)
+||..++.. ..+.+ .-.....|+|+|+++.| ++-..++.|++||+.++.......
T Consensus 709 v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 709 EYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred EEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence 999976642 22211 11235679999998854 555667899999998765322110
Q ss_pred -------C--------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC------------CCCCeeEE
Q 006743 121 -------Y--------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS------------SSEAVSSL 173 (633)
Q Consensus 121 -------h--------~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~------------H~~~VtsL 173 (633)
. -.....++++++|+++++-..++.|++||..++. . ..+...+ .-.....|
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~-v-~tiaG~G~~G~~dG~~~~a~l~~P~GI 864 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR-V-TTLAGTGKAGFKDGKALKAQLSEPAGL 864 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe-E-EEEeccCCcCCCCCcccccccCCceEE
Confidence 0 1124689999999988888899999999998752 1 2221111 11235566
Q ss_pred EEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743 174 CWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (633)
Q Consensus 174 afsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~ 211 (633)
+++++ +.++++...++.|++||+...
T Consensus 865 avd~d------------G~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 865 ALGEN------------GRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEeCC------------CCEEEEECCCCEEEEEECCCC
Confidence 76664 345566677889999998653
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.64 E-value=6.3e-08 Score=116.97 Aligned_cols=176 Identities=15% Similarity=0.239 Sum_probs=126.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe---CCCeEEEEECCC--CCceeE
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---DDGTLHLWDTTG--RSPKVS 75 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs---~DGtI~IWDl~t--~~~~v~ 75 (633)
.|+.+|+.+..+..||.+.+|... .+.....++ |.....++.|-. . .+++++ +++.+.+||..- ....++
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc-hnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC-HNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhcccCCceeeeccCCceeecccC-Ccceecccc-CCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceee
Confidence 488999999999999999999975 566666665 445566677765 2 566654 578999999743 333344
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~ 155 (633)
..|.+.++++++.|....|++|+.+|.|++||++..+..+.+.. ++ ...++++|+..|.|+||++...
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~- 2400 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEF- 2400 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEcccc-
Confidence 78999999999999999999999999999999998887766543 44 5679999999999999999876
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006743 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD 201 (633)
Q Consensus 156 k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg 201 (633)
..+..+.. .| .-.++ |-..|..+-.+ ....+++|+.|+
T Consensus 2401 ~ll~~~p~-e~--ak~gf-Fr~~g~Q~~v~----~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2401 GLLHTFPS-EH--AKQGF-FRNIGMQINVG----QCNRIFSCGADG 2438 (2439)
T ss_pred chhhcCch-hh--cccch-hhhcCceeeec----cCceEEEecCCC
Confidence 22222221 12 22233 44444444333 445566666665
No 258
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.64 E-value=6.8e-07 Score=93.19 Aligned_cols=148 Identities=13% Similarity=0.174 Sum_probs=106.3
Q ss_pred ccCCCCEE-EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006743 2 YNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (633)
Q Consensus 2 FSpdG~~L-aSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H 80 (633)
|..|..++ .....|+.|.+|++...+--+++... ...+..++|+|+|+++|.+..-|-.|.||.+.+.+.. .+.--
T Consensus 56 W~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg-~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~~~~p 132 (447)
T KOG4497|consen 56 WKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG-QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--LLPHP 132 (447)
T ss_pred eeccceeeeeeeeccceEEEEEeecceeEEEeccC-CCcceeeeECCCcceEeeeecceeEEEEEEeccceeE--Eeccc
Confidence 44555544 45678899999999988888888763 4556678999999999999999999999999887742 33333
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC------------------------------------eEEEEeCCCCceeeEeeCCCC
Q 006743 81 SAPTAGISFSSDDKIIASVGLDK------------------------------------KLYTYDPGSRRPSSCITYEAP 124 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DG------------------------------------tVrIWDlrtgk~v~~i~h~~~ 124 (633)
...+..++|+|||++.+.+++.. .+.+||---.-.+......-.
T Consensus 133 K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG 212 (447)
T KOG4497|consen 133 KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLG 212 (447)
T ss_pred ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccc
Confidence 45578899999999988776432 233333211111112223456
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 125 FSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 125 ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
+..+.|+|.+++|++|+.|+.++|.+--
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhhcee
Confidence 8889999999999999999998886543
No 259
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=2.2e-05 Score=83.12 Aligned_cols=189 Identities=11% Similarity=0.149 Sum_probs=129.3
Q ss_pred CccCCCCEEEEEEC---CCcEEEEECCC--CceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 006743 1 MYNCKDEHLASISL---SGDLILHNLAS--GAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73 (633)
Q Consensus 1 AFSpdG~~LaSgs~---DG~I~IWDl~t--gk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~ 73 (633)
+|++++++|.++.. +|.|..|.+.. |+... .... .+..-+-|+++++++.++++--.-|.|.++-+.....+
T Consensus 46 ~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l 124 (346)
T COG2706 46 AVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL 124 (346)
T ss_pred EECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence 57899999988755 47788877764 44322 1111 12232458999999954444456789999999653211
Q ss_pred --eEEeccCCCC----------eEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCceeeE----eeCCCCeEEEEEecCCCE
Q 006743 74 --VSWLKQHSAP----------TAGISFSSDDKIIASVGLD-KKLYTYDPGSRRPSSC----ITYEAPFSSLAFIDDDWI 136 (633)
Q Consensus 74 --v~~l~~H~~~----------VtsLafSPdg~~LaSgS~D-GtVrIWDlrtgk~v~~----i~h~~~ItsLafSPdG~~ 136 (633)
......|.+. +....+.|++++|++++.. -.|.+||+..++.... +......+.|.|+|++++
T Consensus 125 ~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~ 204 (346)
T COG2706 125 QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKY 204 (346)
T ss_pred ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcE
Confidence 1123345555 8899999999999988632 2699999997765432 246778899999999999
Q ss_pred EEEEEc-CCeEEEEECCCCCCceEEEee-------cCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743 137 LTAGTS-NGRVVFYDIRGKPQPLTVLRA-------CSSSEAVSSLCWQRAKPVFIDETTCKA 190 (633)
Q Consensus 137 LatGs~-DGsV~IWDlrs~~k~v~~l~~-------~~H~~~VtsLafsPdg~~Las~s~~sd 190 (633)
..+.++ +++|.+|........+..++. +.-..+...|..+++|++|.++....+
T Consensus 205 aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d 266 (346)
T COG2706 205 AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD 266 (346)
T ss_pred EEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence 887665 899999999875333333332 233456778999999999988744333
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.57 E-value=4.8e-06 Score=92.38 Aligned_cols=143 Identities=13% Similarity=0.183 Sum_probs=121.4
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEe-CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743 7 EHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~-~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt 85 (633)
..++-|...|.|.+|++..++.-..+. +.|.+.|.++.|+.+-. +|.+++.|+.+..|+...... ...+.+....+.
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVI-IRIWKEQKPLVS 148 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccccee-eeeeccCCCccc
Confidence 467788899999999999999888877 67888899998888776 899999999999999988773 566777888899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecC-----CCEEEEE-EcCCeEEEEECCC
Q 006743 86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD-----DWILTAG-TSNGRVVFYDIRG 153 (633)
Q Consensus 86 sLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPd-----G~~LatG-s~DGsV~IWDlrs 153 (633)
.++.+||+..+++++ +.|++||+++++.+..+ +|.++|.++.|--+ |.+++++ ..+..+.+|-++.
T Consensus 149 sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 149 SLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999999999988 57999999999999888 69999999999876 6777654 4455677887665
No 261
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.57 E-value=6.1e-07 Score=95.58 Aligned_cols=150 Identities=14% Similarity=0.189 Sum_probs=105.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce----eEEEeCCCCCcEEEEEEccCCCeEEEEE---eCCCeEEEEECCCCCcee
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAK----AAELKDPNEQVLRVLDYSRNSRHLLVTA---GDDGTLHLWDTTGRSPKV 74 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~----v~~~~~~~~~~VssLafSpdg~~lLaSG---s~DGtI~IWDl~t~~~~v 74 (633)
+++.+++||++..+....+++...... +..... ...-+.+.|..+.. ....+ ++...+.+|....+. .
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v--~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~~~~--~ 144 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV--PKRPTAISFIREDT-SVLVADKAGDVYSFDILSADSGR--C 144 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec--ccCcceeeeeeccc-eEEEEeecCCceeeeeecccccC--c
Confidence 578899999998888877777754432 222221 12223344554444 23333 344455555555433 4
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee--EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS--CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~--~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
..+.+|-..+++++|+||+++|+++..|..|++-....-..+. .++|..-|..++.-++ ..|++|+.|++|++||++
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecc
Confidence 5567999999999999999999999999999997776544443 3479999999998755 558999999999999999
Q ss_pred CCCCc
Q 006743 153 GKPQP 157 (633)
Q Consensus 153 s~~k~ 157 (633)
+++.+
T Consensus 224 sgk~L 228 (390)
T KOG3914|consen 224 SGKLL 228 (390)
T ss_pred cCCcc
Confidence 98543
No 262
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.53 E-value=2.7e-07 Score=103.85 Aligned_cols=202 Identities=13% Similarity=0.162 Sum_probs=144.4
Q ss_pred ccCCC-CEEEEEECCCcEEEEECCCCcee-EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 2 YNCKD-EHLASISLSGDLILHNLASGAKA-AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 2 FSpdG-~~LaSgs~DG~I~IWDl~tgk~v-~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
|+++. ..+++++.|-.|..||+.+.... ..+..-+.. -..|+|+-...+.+ +.+..+.|.+||++.+..+...+++
T Consensus 122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~-asqVkwnyk~p~vl-asshg~~i~vwd~r~gs~pl~s~K~ 199 (1081)
T KOG0309|consen 122 FNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA-ASQVKWNYKDPNVL-ASSHGNDIFVWDLRKGSTPLCSLKG 199 (1081)
T ss_pred cCCCCCcceeeccccccceeeeccCCCcceeeeeccccc-CceeeecccCcchh-hhccCCceEEEeccCCCcceEEecc
Confidence 44443 47899999999999999876533 333332333 34589998777544 5567788999999988888899999
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC--ceeeEeeCCCCeEEEEEecC--CCEEEEEEcCCeEEEEECC--
Q 006743 80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR--RPSSCITYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIR-- 152 (633)
Q Consensus 80 H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtg--k~v~~i~h~~~ItsLafSPd--G~~LatGs~DGsV~IWDlr-- 152 (633)
|...|+.++|+. -...+.+++.|++|+.||.... ...+.+....+|..-++-|- |.++.---.+..|.+++.+
T Consensus 200 ~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~ 279 (1081)
T KOG0309|consen 200 HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENS 279 (1081)
T ss_pred cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccch
Confidence 999999999987 5667899999999999998753 34455566777877777774 3444433333456555544
Q ss_pred -------CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 153 -------GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 153 -------s~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
+..+++..+. +|...|....|...+....- ....+..|++-+.|..+++|-+.
T Consensus 280 d~e~n~~~~~~pVh~F~--GH~D~V~eFlWR~r~e~~~d--~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 280 DLEWNVFDLNTPVHTFV--GHDDVVLEFLWRKRKECDGD--YDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hhhhccccCCcceeeec--CcchHHHHHhhhhcccccCC--CCccceeEEEeecCCceEeeecc
Confidence 3445666665 89999998888764332211 13356689999999999999775
No 263
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.48 E-value=1.5e-06 Score=92.66 Aligned_cols=163 Identities=14% Similarity=0.117 Sum_probs=113.5
Q ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE--EeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCcee
Q 006743 42 VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS--WLKQHSAPTAGISFSSDDKIIASVGL---DKKLYTYDPGSRRPS 116 (633)
Q Consensus 42 sLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~--~l~~H~~~VtsLafSPdg~~LaSgS~---DGtVrIWDlrtgk~v 116 (633)
.+..++.++ +++.+..++...+++........+ ....-...-+++.|..+...+..+.. ...+.+|....+.+.
T Consensus 67 ~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 67 LVLTSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred ccccCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 345566666 888888888877887755442111 11122233344555554444444444 445555655557888
Q ss_pred eEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEE
Q 006743 117 SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLG 196 (633)
Q Consensus 117 ~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlS 196 (633)
..++|-.-++.++|+||+++|+++..|..|+|-..... ..+..+. .||..-|..++.-+ +..|++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-f~Iesfc-lGH~eFVS~isl~~-------------~~~LlS 210 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-FVIESFC-LGHKEFVSTISLTD-------------NYLLLS 210 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-cchhhhc-cccHhheeeeeecc-------------Cceeee
Confidence 88899999999999999999999999999999776654 2223333 38999999999765 345888
Q ss_pred eeCCCeEEccCCCCCCCCCccccc
Q 006743 197 GAVGDSILMPDPLPSVTTSSVSLS 220 (633)
Q Consensus 197 gs~Dg~IkIWDlr~~~~~ss~s~s 220 (633)
+++|+++++||++.......+..+
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred cCCCCcEEEEecccCCcccccchh
Confidence 899999999999988877665543
No 264
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.47 E-value=4.1e-06 Score=96.61 Aligned_cols=187 Identities=17% Similarity=0.184 Sum_probs=139.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V 84 (633)
++..++.|+-...+..+|+++.+..+...- ....|..++.+ ++ ++++|...|+|.+-|..+.+. ++.+..|.+.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~~~-iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSFET-IHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEec--Cc-EEEeecccceEEeecCCcCce-eeeeeccccce
Confidence 556788888888999999988877766543 22235655543 44 899999999999999998884 78999999999
Q ss_pred EEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceeeEeeCCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCC
Q 006743 85 AGISFSSDDKIIASVGL---------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 85 tsLafSPdg~~LaSgS~---------DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPd-G~~LatGs~DGsV~IWDlrs~ 154 (633)
.++... |+.|++|+. |..|+|||+|..+.+.-+.......-+.|+|. ...+++++..|.+.+-|..+.
T Consensus 221 SDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 221 SDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccccc
Confidence 887775 999999985 55799999999887766655555577888885 467888889999999995443
Q ss_pred CCc-eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 155 PQP-LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 155 ~k~-v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
..+ ..++........+..++++++++.++.+ ..+|.|.+|--++
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafg------------d~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFG------------DHEGHVNLWADRP 343 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEe------------cccCcEeeecCCC
Confidence 222 3333333445568899998876666554 5688899997544
No 265
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.46 E-value=6.7e-07 Score=100.79 Aligned_cols=198 Identities=16% Similarity=0.231 Sum_probs=139.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCC--CCceeEEe
Q 006743 2 YNCKDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTG--RSPKVSWL 77 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~t-gk~v~~~~~~~~~~VssLafSpdg~-~lLaSGs~DGtI~IWDl~t--~~~~v~~l 77 (633)
.+|.|+-+|.++.-| +.+.|+.. +.+..-+.......|-.+.|++... .+-+.......-.+|++.. .......+
T Consensus 32 i~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~l 110 (1081)
T KOG0309|consen 32 INPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVL 110 (1081)
T ss_pred eccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEE
Confidence 356677777776665 55566654 3333333322234566688987632 1333444456667898843 33334567
Q ss_pred ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-eeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743 78 KQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 78 ~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk-~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~ 154 (633)
.+|...|+++.|+| ....+++++-|-.|..||+++.. ++... .....-..|+|+...-.+.+.+..+.|++||.+.+
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~g 190 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKG 190 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCC
Confidence 79999999999999 67789999999999999999854 44443 34566778999985544555555677999999999
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 155 ~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
..++..++ +|...|..++|..- ....+++++.|++|+.||......
T Consensus 191 s~pl~s~K--~~vs~vn~~~fnr~-----------~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 191 STPLCSLK--GHVSSVNSIDFNRF-----------KYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred CcceEEec--ccceeeehHHHhhh-----------hhhhhcccCCCCceeeeccccccc
Confidence 88888888 68888999998762 445678888999999999876554
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.43 E-value=8.2e-06 Score=89.32 Aligned_cols=183 Identities=15% Similarity=0.155 Sum_probs=125.8
Q ss_pred EECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC----------CCeEEEEECCCCCceeEEeccCC
Q 006743 12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD----------DGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 12 gs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~----------DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
.+..+.++||.+..+..+....-..-+.|. +.|++.|..+++-.-. ...++|++++.....+ ...-.
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q-LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~~~ 274 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQ-LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKDLK 274 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEeecccE-EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccce--ecccc
Confidence 356678888888766655432211234444 8999999854443221 2468899998766433 33667
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCCC
Q 006743 82 APTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFYDIRGKPQ 156 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS--~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D---GsV~IWDlrs~~k 156 (633)
++|..++|.|.++.|++++ .+-.+.++|++.. +.....+..=..+.|+|.++++++++.| |.|.+||..+...
T Consensus 275 ~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 275 DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred ccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 8999999999777766554 7889999999976 4444455666778899999999988775 6799999988754
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 157 ~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
++..+. .....-+.|+|+++++..... ... -..|..++|||+.
T Consensus 353 ~~~~~~----~~n~s~~~wspd~qF~~~~~t--s~k----~~~Dn~i~l~~v~ 395 (561)
T COG5354 353 VAGAFN----GLNTSYCDWSPDGQFYDTDTT--SEK----LRVDNSIKLWDVY 395 (561)
T ss_pred EEEEee----cCCceEeeccCCceEEEecCC--Ccc----cccCcceEEEEec
Confidence 443333 223455679999998876522 111 1348999999984
No 267
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=7.5e-07 Score=96.75 Aligned_cols=167 Identities=14% Similarity=0.171 Sum_probs=130.4
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCC
Q 006743 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGS 112 (633)
Q Consensus 35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlrt 112 (633)
.|.+.|..|.|+..|. .|++|++|..|.+||......+.....+|...|..-.|-| +...|++++.||.|++=.+-.
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 4677788899999998 8999999999999999888877777889999999999998 667899999999999877643
Q ss_pred -Ccee---eEeeCCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCCCeEEE
Q 006743 113 -RRPS---SCITYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAKPVFID 184 (633)
Q Consensus 113 -gk~v---~~i~h~~~ItsLafSPdG-~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~---~VtsLafsPdg~~Las 184 (633)
+.+. ..-.|.++|..++.-|+. +.|.+++.|+.|.-+|++.........+...+.. ....++.+|.
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~------ 292 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR------ 292 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC------
Confidence 3333 223699999999999965 6688999999999999997643333333333433 4667777774
Q ss_pred eccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 185 ETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 185 ~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
.-..+..++.|..+++||.|....
T Consensus 293 -----nt~~faVgG~dqf~RvYD~R~~~~ 316 (559)
T KOG1334|consen 293 -----NTNEFAVGGSDQFARVYDQRRIDK 316 (559)
T ss_pred -----CccccccCChhhhhhhhcccchhh
Confidence 333556667799999999987654
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.41 E-value=1.8e-05 Score=96.88 Aligned_cols=154 Identities=12% Similarity=0.200 Sum_probs=108.7
Q ss_pred CccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCC--------------CCCcEEEEEEccCCCeEEEEEeCCCeEEEE
Q 006743 1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELKDP--------------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLW 65 (633)
Q Consensus 1 AFSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~--------------~~~~VssLafSpdg~~lLaSGs~DGtI~IW 65 (633)
+|++ ++..+++...++.|++||..++... .+.+. .......|+|+|++..++++-..++.|++|
T Consensus 689 a~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 689 CFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred EEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 3566 4555566667889999998776542 22110 012234689999988677777788999999
Q ss_pred ECCCCCceeEE------------ecc--------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---
Q 006743 66 DTTGRSPKVSW------------LKQ--------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE--- 122 (633)
Q Consensus 66 Dl~t~~~~v~~------------l~~--------H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~--- 122 (633)
|+.++...... +.. .-....+++++++|+++++-..++.|++||..++......+..
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence 99865421110 000 0112468899999999888899999999999887765444211
Q ss_pred -----------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743 123 -----------APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 123 -----------~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~ 155 (633)
.....|+++++|+++++-+.++.|++||+++..
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 247789999999988888899999999998863
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.40 E-value=2.5e-06 Score=89.56 Aligned_cols=199 Identities=7% Similarity=0.091 Sum_probs=130.4
Q ss_pred CEEEEEECCCcEEEEECCCCc-----------------------------------eeEEEeCCCCCcEEEEEEccCCCe
Q 006743 7 EHLASISLSGDLILHNLASGA-----------------------------------KAAELKDPNEQVLRVLDYSRNSRH 51 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk-----------------------------------~v~~~~~~~~~~VssLafSpdg~~ 51 (633)
..++..+.|.+|++|.+.... +.+.+...|...|..|.++.|..
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 366777899999999874321 11233345677788899998887
Q ss_pred EEEEEeCCCeEEEEECCCCC--ceeEEeccC-----CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee----eEe
Q 006743 52 LLVTAGDDGTLHLWDTTGRS--PKVSWLKQH-----SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPS----SCI 119 (633)
Q Consensus 52 lLaSGs~DGtI~IWDl~t~~--~~v~~l~~H-----~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v----~~i 119 (633)
.++ .++|=.|.+|.++-.. ..+.-++.+ ..-|++..|+| ..++|+..+..|+|++.|+|..... ..+
T Consensus 178 t~l-SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 178 TFL-SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred eEe-eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 344 4678899999985332 112223333 34688999999 7889999999999999999853221 111
Q ss_pred e-------------CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCe-EEEe
Q 006743 120 T-------------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPV-FIDE 185 (633)
Q Consensus 120 ~-------------h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~-Las~ 185 (633)
. .-..|..+.|++.|+|+++-.. -+|++||+....+|+..+..+.+...-.|-.+-.|.-+ -.-|
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 1 1245889999999999987654 67999999887788888774322111111001111000 0112
Q ss_pred ccCCCCeEEEEeeCCCeEEccCC
Q 006743 186 TTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 186 s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
.+.+++.++++|+..+.++++++
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred EEcCCcceEecccccceEEEecC
Confidence 24557778888898999999985
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.39 E-value=0.00015 Score=78.49 Aligned_cols=196 Identities=9% Similarity=0.074 Sum_probs=123.4
Q ss_pred ccCCCCEEEEEEC----------CCcEEEEECCCCceeEEEeCCCC------CcEEEEEEccCCCeEEEEEeC-CCeEEE
Q 006743 2 YNCKDEHLASISL----------SGDLILHNLASGAKAAELKDPNE------QVLRVLDYSRNSRHLLVTAGD-DGTLHL 64 (633)
Q Consensus 2 FSpdG~~LaSgs~----------DG~I~IWDl~tgk~v~~~~~~~~------~~VssLafSpdg~~lLaSGs~-DGtI~I 64 (633)
++|||+.|+++.. +..|.+||..+.+.+.++..... .....++++|+|+.+++.--. +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 6899998887765 68899999999999988874222 112257899999844434324 789999
Q ss_pred EECCCCCceeE--------------------Eecc---------------CCCCeEEE---------EEcC-CCCEEEEE
Q 006743 65 WDTTGRSPKVS--------------------WLKQ---------------HSAPTAGI---------SFSS-DDKIIASV 99 (633)
Q Consensus 65 WDl~t~~~~v~--------------------~l~~---------------H~~~VtsL---------afSP-dg~~LaSg 99 (633)
.|+..++.... +..+ +...|... .|.+ ++++++..
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 99976653210 0000 00011000 2234 67776666
Q ss_pred eCCCeEEEEeCCCC-----ceeeEee--------CCCCeEEEEEecCCCEEEEEE----------cCCeEEEEECCCCCC
Q 006743 100 GLDKKLYTYDPGSR-----RPSSCIT--------YEAPFSSLAFIDDDWILTAGT----------SNGRVVFYDIRGKPQ 156 (633)
Q Consensus 100 S~DGtVrIWDlrtg-----k~v~~i~--------h~~~ItsLafSPdG~~LatGs----------~DGsV~IWDlrs~~k 156 (633)
.. |+|.+.|+... +....+. ..+.+.-++++++++.+++.. ..+.|.++|..+.+
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k- 290 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK- 290 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-
Confidence 65 99999996443 3333221 233455599999999888743 12479999998873
Q ss_pred ceEEEeecCCCCCeeEEEEccCCC-eEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 157 PLTVLRACSSSEAVSSLCWQRAKP-VFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 157 ~v~~l~~~~H~~~VtsLafsPdg~-~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
.+..+. -...+..++++||++ .|+.. ...++.|.++|+.....
T Consensus 291 vi~~i~---vG~~~~~iavS~Dgkp~lyvt-----------n~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 291 RLRKIE---LGHEIDSINVSQDAKPLLYAL-----------STGDKTLYIFDAETGKE 334 (352)
T ss_pred EEEEEe---CCCceeeEEECCCCCeEEEEe-----------CCCCCcEEEEECcCCeE
Confidence 333333 346899999999876 44332 23466677777755443
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.38 E-value=4.1e-05 Score=83.31 Aligned_cols=190 Identities=11% Similarity=0.046 Sum_probs=136.2
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCC------C--CCcEEEEE----Ecc-CCCeEEEEEeCCCeEEEEECCC
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDP------N--EQVLRVLD----YSR-NSRHLLVTAGDDGTLHLWDTTG 69 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~------~--~~~VssLa----fSp-dg~~lLaSGs~DGtI~IWDl~t 69 (633)
+.||+.++ -...|.|++||..+.+. .++... . ...+.-+. |++ +|+ +++..+. |+..|.+...
T Consensus 275 nsDGkrIv-Fq~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd-~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 275 NSDGKRIV-FQNAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD-YIALVSR-GKAFIMRPWD 350 (668)
T ss_pred CCCCcEEE-EecCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCCc-EEEEEec-CcEEEECCCC
Confidence 56788776 45678999999866442 222211 0 01111111 333 344 7777776 7788877755
Q ss_pred CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743 70 RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (633)
Q Consensus 70 ~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG-tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~I 148 (633)
+- +. -.+|...|.-..+.-+++-++.|..|| .|-|||.++++..+....-+.|.++..+++|++++++.....|.+
T Consensus 351 ~~--~i-qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 351 GY--SI-QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred Ce--eE-EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 54 22 246777798888888888999999999 899999999998888888899999999999999999999999999
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
+|+.++.. +.+. ....+-|+.++|+|++++++.+ ..++.+ -..|+++|...
T Consensus 428 ididngnv--~~id-kS~~~lItdf~~~~nsr~iAYa--fP~gy~------tq~Iklydm~~ 478 (668)
T COG4946 428 IDIDNGNV--RLID-KSEYGLITDFDWHPNSRWIAYA--FPEGYY------TQSIKLYDMDG 478 (668)
T ss_pred EEecCCCe--eEec-ccccceeEEEEEcCCceeEEEe--cCccee------eeeEEEEecCC
Confidence 99999842 3332 2456789999999999999987 222222 45677777643
No 272
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.36 E-value=2.3e-06 Score=89.79 Aligned_cols=102 Identities=18% Similarity=0.333 Sum_probs=81.6
Q ss_pred EEEECCCcEEEEECC--CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 006743 10 ASISLSGDLILHNLA--SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI 87 (633)
Q Consensus 10 aSgs~DG~I~IWDl~--tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsL 87 (633)
..|...|.|.+..+. .-..+..+.+ |...+.+++|.+... +|++|..|..|.+||+-........+.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence 344455555554433 3345556665 667788899999877 899999999999999988777778889999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCC
Q 006743 88 SFSSDDKIIASVGLDKKLYTYDPGSR 113 (633)
Q Consensus 88 afSPdg~~LaSgS~DGtVrIWDlrtg 113 (633)
...+.-+.+++++.||.|.+||++..
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccce
Confidence 98888899999999999999998643
No 273
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.5e-05 Score=88.15 Aligned_cols=149 Identities=14% Similarity=0.200 Sum_probs=106.7
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEE-EEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCE
Q 006743 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLV-TAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKI 95 (633)
Q Consensus 17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLa-SGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~ 95 (633)
++++++++.......+ ...++|.+++|+++++.+.+ -|-.--.+.|||++..- +..+ ..++=+++-|+|.|++
T Consensus 252 ~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--v~df--~egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--VFDF--PEGPRNTAFFNPHGNI 325 (566)
T ss_pred eEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--eEeC--CCCCccceEECCCCCE
Confidence 5778887633333333 35789999999999974433 34456789999998654 3332 4466788999999999
Q ss_pred EEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc------CCeEEEEECCCCCCceEEEeecCC
Q 006743 96 IASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS------NGRVVFYDIRGKPQPLTVLRACSS 166 (633)
Q Consensus 96 LaSgS~D---GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~------DGsV~IWDlrs~~k~v~~l~~~~H 166 (633)
|+.++.+ |.|-+||+.+.+++..+... ..+-+.|+|||.+|++++. |+.++||+..... +... ..
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~--l~~~---~f 399 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL--LHEK---MF 399 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce--eehh---hh
Confidence 9998875 58999999997777666433 3455789999999999876 6779999987652 1111 11
Q ss_pred CCCeeEEEEcc
Q 006743 167 SEAVSSLCWQR 177 (633)
Q Consensus 167 ~~~VtsLafsP 177 (633)
......++|.|
T Consensus 400 ~sEL~qv~W~P 410 (566)
T KOG2315|consen 400 KSELLQVEWRP 410 (566)
T ss_pred hHhHhheeeee
Confidence 12577888887
No 274
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.35 E-value=1.5e-05 Score=88.27 Aligned_cols=197 Identities=15% Similarity=0.168 Sum_probs=135.4
Q ss_pred CccCCCCEEEEE---ECC-CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCcee
Q 006743 1 MYNCKDEHLASI---SLS-GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKV 74 (633)
Q Consensus 1 AFSpdG~~LaSg---s~D-G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--I~IWDl~t~~~~v 74 (633)
+|+++++.++.. ... ..|+++|+++++....+.. ...-..-+|+|||+.++++...||. |+++|+.+.. .
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~--~ 274 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN--L 274 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc--c
Confidence 478888876543 222 4699999998876555442 1222346899999988888888886 5556776665 2
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC-Ce--EEE
Q 006743 75 SWLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-GR--VVF 148 (633)
Q Consensus 75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DG---tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D-Gs--V~I 148 (633)
..+....+.-..-.|+|||++|+-.+..+ .|.++|+..+...+.....+.-..-.|+|||++|+..+.. |. |.+
T Consensus 275 ~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~ 354 (425)
T COG0823 275 PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDK 354 (425)
T ss_pred eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEE
Confidence 33444434344668999999998877554 6888898877765554444444488899999999877643 44 777
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEc
Q 006743 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM 205 (633)
Q Consensus 149 WDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkI 205 (633)
+|+.+... +..+ .+........|.+++..+...+....+..+...+.++.+..
T Consensus 355 ~~~~~~~~-~~~l---t~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~ 407 (425)
T COG0823 355 NDLASGGK-IRIL---TSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR 407 (425)
T ss_pred eccCCCCc-EEEc---cccccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence 77776643 3333 35566667889999999988767667777777777776654
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=1.2e-06 Score=95.88 Aligned_cols=175 Identities=21% Similarity=0.268 Sum_probs=116.9
Q ss_pred eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 006743 29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------PKVSWLKQHSAPTAGISFSSDDKIIASVGLD 102 (633)
Q Consensus 29 v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~------~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D 102 (633)
++.+.+ |...|+.++--.+. +-+++++.|++|++|.++... ....++..|..+|+++.|..+-+++++ .|
T Consensus 728 L~nf~G-H~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 728 LCNFTG-HQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred eecccC-cHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--cc
Confidence 445555 55556655544444 369999999999999985321 113457789999999999988877765 47
Q ss_pred CeEEEEeCCCCceeeEe---eCCCCeEEEEEec--CCCEEEEE-EcCCeEEEEECCCCCC--ceEEEeecCCCCCeeEEE
Q 006743 103 KKLYTYDPGSRRPSSCI---TYEAPFSSLAFID--DDWILTAG-TSNGRVVFYDIRGKPQ--PLTVLRACSSSEAVSSLC 174 (633)
Q Consensus 103 GtVrIWDlrtgk~v~~i---~h~~~ItsLafSP--dG~~LatG-s~DGsV~IWDlrs~~k--~v~~l~~~~H~~~VtsLa 174 (633)
+.|++||.--++++... ...+.+..+..-+ +..++++| +...+|+++|.|...- .+++-...+....+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 88999999877766533 2333333333333 44555555 6788999999998642 223333345567799999
Q ss_pred EccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 175 fsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
..+.|++++.+ -.++...++.......|.-|..
T Consensus 884 Va~~GN~lAa~-LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 884 VADKGNKLAAA-LSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred eccCcchhhHH-hcCCcEEEEecCCCceeccCCc
Confidence 99999999887 3344444555555556777754
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.27 E-value=0.00028 Score=78.29 Aligned_cols=160 Identities=9% Similarity=0.085 Sum_probs=103.7
Q ss_pred CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEE-EEeC--CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC
Q 006743 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLV-TAGD--DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD 92 (633)
Q Consensus 16 G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLa-SGs~--DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPd 92 (633)
..|.+-|. +|...+.+... . ......|+|+++.+++ +... +..|+++|+.+++. ..+....+.+....|+||
T Consensus 169 ~~l~~~d~-dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPD 243 (419)
T PRK04043 169 SNIVLADY-TLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKD 243 (419)
T ss_pred ceEEEECC-CCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCC
Confidence 46777775 44444444432 3 5566899999985344 3333 35799999988773 344445566777899999
Q ss_pred CCEEEEEe-C--CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCC
Q 006743 93 DKIIASVG-L--DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSS 166 (633)
Q Consensus 93 g~~LaSgS-~--DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~-DG--sV~IWDlrs~~k~v~~l~~~~H 166 (633)
|+.++... . +..|+++|+.+++......+........|+|||+.|+..+. .| .|+++|+.++.. +.+...+.
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g~ 321 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHGK 321 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCccCCC
Confidence 98776543 2 34799999988876555444443456789999988876654 33 588888887632 12221111
Q ss_pred CCCeeEEEEccCCCeEEEec
Q 006743 167 SEAVSSLCWQRAKPVFIDET 186 (633)
Q Consensus 167 ~~~VtsLafsPdg~~Las~s 186 (633)
....|+|+|++|+...
T Consensus 322 ----~~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 322 ----NNSSVSTYKNYIVYSS 337 (419)
T ss_pred ----cCceECCCCCEEEEEE
Confidence 1248999999887663
No 277
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.27 E-value=2e-06 Score=87.49 Aligned_cols=75 Identities=25% Similarity=0.427 Sum_probs=69.3
Q ss_pred CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 006743 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS 112 (633)
Q Consensus 38 ~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrt 112 (633)
..|.+++-+|..++++++|++||.+-+||.+....++..++.|+.+|+.+-|+| ++..|+++++||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 448889999998899999999999999999988877888999999999999999 899999999999999999864
No 278
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=2.3e-06 Score=89.82 Aligned_cols=162 Identities=14% Similarity=0.233 Sum_probs=111.2
Q ss_pred EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----CceeEEeccCCCCeE
Q 006743 10 ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----SPKVSWLKQHSAPTA 85 (633)
Q Consensus 10 aSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~----~~~v~~l~~H~~~Vt 85 (633)
++.+.+-.|-+-|+++|.. ..|. ...-|.++.|...+. +++.|+.+|.|.++|++.. ....+. .-|...|+
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~--sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ--SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecccc-cccc--cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchh
Confidence 4455677788888877633 2333 234456678887666 8999999999999999755 333333 45889999
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee-eEeeCCCCeEEEE-----EecCCCEEEEEEcCCeEEEEECCCCCCce
Q 006743 86 GISFSS-DDKIIASVGLDKKLYTYDPGSRRPS-SCITYEAPFSSLA-----FIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (633)
Q Consensus 86 sLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v-~~i~h~~~ItsLa-----fSPdG~~LatGs~DGsV~IWDlrs~~k~v 158 (633)
++.... ++.+|++.+.+|+|++||+|.-++. .+..+++.|+..+ .++....|++++.|...+||.++.+ ..+
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl 381 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLL 381 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC-cee
Confidence 998887 8899999999999999999975552 1223344444433 3445678889999999999999977 333
Q ss_pred EEEeec--CCCCCeeEEEEcc
Q 006743 159 TVLRAC--SSSEAVSSLCWQR 177 (633)
Q Consensus 159 ~~l~~~--~H~~~VtsLafsP 177 (633)
..+... .....+.+++|..
T Consensus 382 ~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 382 CTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eccCCCCccccccccceehhc
Confidence 333322 1222455666643
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.23 E-value=0.00031 Score=71.47 Aligned_cols=177 Identities=14% Similarity=0.145 Sum_probs=110.9
Q ss_pred CccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEc-cCCCeEEEEEeCCCeEEEEECCCCCceeE-Ee
Q 006743 1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYS-RNSRHLLVTAGDDGTLHLWDTTGRSPKVS-WL 77 (633)
Q Consensus 1 AFSp-dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafS-pdg~~lLaSGs~DGtI~IWDl~t~~~~v~-~l 77 (633)
+|.+ +|.++++--..+.|+.|+..+++... +.. .. ...+++. +++ .|+.+..++ +.++|..+++.... ..
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~~-~~G~~~~~~~g--~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--PG-PNGMAFDRPDG--RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES--SS-EEEEEEECTTS--EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec--CC-CceEEEEccCC--EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 3676 55555665578899999987765443 332 12 4456777 554 355556544 55569887753211 11
Q ss_pred c--c-CCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEE-EEEcCCe
Q 006743 78 K--Q-HSAPTAGISFSSDDKIIASVGLD--------KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT-AGTSNGR 145 (633)
Q Consensus 78 ~--~-H~~~VtsLafSPdg~~LaSgS~D--------GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~La-tGs~DGs 145 (633)
. . .....+++++.++|++.++.... +.|..++.. ++.......-...+.++|+|+++.|+ +-+..+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence 1 1 34568899999999977776544 568888888 66555555567789999999999776 4556788
Q ss_pred EEEEECCCCCCce---EEEeec-CCCCCeeEEEEccCCCeEEEe
Q 006743 146 VVFYDIRGKPQPL---TVLRAC-SSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 146 V~IWDlrs~~k~v---~~l~~~-~H~~~VtsLafsPdg~~Las~ 185 (633)
|..|++......+ ..+... ...+..-.++++.+|++.++.
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence 9999997543311 222211 222347789998877665553
No 280
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.22 E-value=1.1e-05 Score=83.77 Aligned_cols=198 Identities=14% Similarity=0.212 Sum_probs=129.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc-----eeEEEeCCC-----------CCcEEEEEEccC-CCeEEEEEeCCCeEEE
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGA-----KAAELKDPN-----------EQVLRVLDYSRN-SRHLLVTAGDDGTLHL 64 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk-----~v~~~~~~~-----------~~~VssLafSpd-g~~lLaSGs~DGtI~I 64 (633)
|...|.||++|...|.|.+|.-+... -..+|+.|. .+.|..+.|..+ ++.-++..+.|++|++
T Consensus 34 fd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKl 113 (460)
T COG5170 34 FDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKL 113 (460)
T ss_pred eccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeee
Confidence 55678999999999999999854432 122344332 234667888754 4556777789999999
Q ss_pred EECCCCCce-----------------------------------------eE-EeccCCCCeEEEEEcCCCCEEEEEeCC
Q 006743 65 WDTTGRSPK-----------------------------------------VS-WLKQHSAPTAGISFSSDDKIIASVGLD 102 (633)
Q Consensus 65 WDl~t~~~~-----------------------------------------v~-~l~~H~~~VtsLafSPdg~~LaSgS~D 102 (633)
|.+.....+ .+ .-..|...|+++.|+.|...++++. |
T Consensus 114 WKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaD-d 192 (460)
T COG5170 114 WKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSAD-D 192 (460)
T ss_pred eeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeecc-c
Confidence 988543100 00 1145777789999998877777655 6
Q ss_pred CeEEEEeCCCC-ceeeEe---eC-----CCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCCce---EEEe----ec-
Q 006743 103 KKLYTYDPGSR-RPSSCI---TY-----EAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQPL---TVLR----AC- 164 (633)
Q Consensus 103 GtVrIWDlrtg-k~v~~i---~h-----~~~ItsLafSPdG-~~LatGs~DGsV~IWDlrs~~k~v---~~l~----~~- 164 (633)
-.|.+|++.-. ....+. +| ...|++..|+|.. ..+.-.+..|.|++-|+|....+. +.+. ..
T Consensus 193 LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~ 272 (460)
T COG5170 193 LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD 272 (460)
T ss_pred eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc
Confidence 67999998642 222222 22 2458889999964 556677788999999999432110 1111 00
Q ss_pred -----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 165 -----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 165 -----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
+-...|..+.|+++|++|++- .=-+|+|||+++...
T Consensus 273 ~~ff~eivsSISD~kFs~ngryIlsR-------------dyltvkiwDvnm~k~ 313 (460)
T COG5170 273 VDFFEEIVSSISDFKFSDNGRYILSR-------------DYLTVKIWDVNMAKN 313 (460)
T ss_pred chhHHHHhhhhcceEEcCCCcEEEEe-------------ccceEEEEecccccC
Confidence 123567889999988888764 135789999987654
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.21 E-value=4.2e-05 Score=78.35 Aligned_cols=156 Identities=10% Similarity=0.010 Sum_probs=106.1
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEE
Q 006743 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLA 129 (633)
Q Consensus 52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLa 129 (633)
+|+.|+.-|...+|...+.+.....+..|...|+-+.=.. ....+..++.|.+++++++.-+....... ..-.+.++.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~ 165 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLH 165 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeE
Confidence 7999999999999999877755556666665443322111 34457788899999999887543322221 113388999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 130 fSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
+++|++++++.+....|.+|.+......+...........-.+..|+ .....++.+..|+.+.|||+|
T Consensus 166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s------------~~~~~FAv~~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS------------ENDLQFAVVFQDGTCAIYDVR 233 (344)
T ss_pred EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec------------cCcceEEEEecCCcEEEEEec
Confidence 99999999999999999999998653222211111222223344444 366677788899999999999
Q ss_pred CCCCCCcccc
Q 006743 210 PSVTTSSVSL 219 (633)
Q Consensus 210 ~~~~~ss~s~ 219 (633)
....+....+
T Consensus 234 ~~~tpm~~~s 243 (344)
T KOG4532|consen 234 NMATPMAEIS 243 (344)
T ss_pred ccccchhhhc
Confidence 8877665433
No 282
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.21 E-value=2.3e-06 Score=87.10 Aligned_cols=145 Identities=15% Similarity=0.190 Sum_probs=96.4
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCceeeE-eeCCCCe
Q 006743 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL-----DKKLYTYDPGSRRPSSC-ITYEAPF 125 (633)
Q Consensus 52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~-----DGtVrIWDlrtgk~v~~-i~h~~~I 125 (633)
-++++..||.+.+++.+......+.+..-...-.+.+....++.+.++.. -+..++|+++-.+.... ......|
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v 182 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAV 182 (319)
T ss_pred ceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccc
Confidence 58999999999999987522111111111111122223334444444331 22466777664332221 1233459
Q ss_pred EEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006743 126 SSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (633)
Q Consensus 126 tsLafSPd-G~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~Ik 204 (633)
.+++-+|. .+.+++|+.||.|-+||.|+...+...+. .|..+|..+-|+|. +...|++++.||.+.
T Consensus 183 ~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~--ahk~~i~eV~FHpk-----------~p~~Lft~sedGslw 249 (319)
T KOG4714|consen 183 TALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK--AHKAEIWEVHFHPK-----------NPEHLFTCSEDGSLW 249 (319)
T ss_pred hhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH--HhhhhhhheeccCC-----------CchheeEecCCCcEE
Confidence 99999995 56777899999999999999876766666 89999999999995 566778888999999
Q ss_pred ccCCC
Q 006743 205 MPDPL 209 (633)
Q Consensus 205 IWDlr 209 (633)
.||-.
T Consensus 250 ~wdas 254 (319)
T KOG4714|consen 250 HWDAS 254 (319)
T ss_pred EEcCC
Confidence 99874
No 283
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=0.00084 Score=71.39 Aligned_cols=189 Identities=13% Similarity=0.166 Sum_probs=124.4
Q ss_pred CccCCCCEEEEEEC-CCcEEEEECCC-Ccee---EEEeC----CC----CCcEEEEEEccCCCeEEEEEe-CCCeEEEEE
Q 006743 1 MYNCKDEHLASISL-SGDLILHNLAS-GAKA---AELKD----PN----EQVLRVLDYSRNSRHLLVTAG-DDGTLHLWD 66 (633)
Q Consensus 1 AFSpdG~~LaSgs~-DG~I~IWDl~t-gk~v---~~~~~----~~----~~~VssLafSpdg~~lLaSGs-~DGtI~IWD 66 (633)
+++++|++|+++.. .|.|.++-++. |... ..+.. .| ..-+....+.|+++ +|++.+ .-..|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEE
Confidence 35788999998875 57899999865 4322 22221 11 11167788999998 455544 455799999
Q ss_pred CCCCCce---eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC--ce--eeEe-------eCCCCeEEEEEe
Q 006743 67 TTGRSPK---VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSR--RP--SSCI-------TYEAPFSSLAFI 131 (633)
Q Consensus 67 l~t~~~~---v~~l~~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrtg--k~--v~~i-------~h~~~ItsLafS 131 (633)
+..+... ...+ .-...-+.|.|+|++++..+.+ -+++|-+|..... +. ++.+ .......++.++
T Consensus 174 ~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 174 LDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred cccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 9865522 1112 3345568899999999987776 4789999998763 22 2222 135568889999
Q ss_pred cCCCEEEEEEc-CCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccCCCeEEEeccCCCC
Q 006743 132 DDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRAKPVFIDETTCKAE 191 (633)
Q Consensus 132 PdG~~LatGs~-DGsV~IWDlrs~~k~v~~l~~~-~H~~~VtsLafsPdg~~Las~s~~sd~ 191 (633)
+||++|.++.. ...|.+|.+......+...... .+......+.|++.+++|++....++.
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc
Confidence 99999998865 3468888777543333333322 444557889999988888776444333
No 284
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.19 E-value=3.9e-05 Score=80.82 Aligned_cols=191 Identities=21% Similarity=0.241 Sum_probs=135.3
Q ss_pred CCCEEEEEECCCcEEEEEC-CCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---ceeEEeccC
Q 006743 5 KDEHLASISLSGDLILHNL-ASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PKVSWLKQH 80 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl-~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~---~~v~~l~~H 80 (633)
...-+++.+.|.+++||-- +.++.-..+.......++++.+.++.+ .|+.|-..|++.-+.+...- ...+....|
T Consensus 35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h 113 (404)
T KOG1409|consen 35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH 113 (404)
T ss_pred CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence 3445788999999999953 345555555433457788899998876 79999999999999874322 124456689
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCceE
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQPLT 159 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~-~k~v~ 159 (633)
...|..+-|+-...++++.+.|..+..--.+.+..+.-........++.+.-. +...|...|.|.+-.+... -.++.
T Consensus 114 ~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~ 191 (404)
T KOG1409|consen 114 QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLIT 191 (404)
T ss_pred hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEE
Confidence 99999999999999999999999877666666655433322233333333322 6667777788777666543 23334
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCC
Q 006743 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
.++ +|.+.+++++|.+ ...+++++..|..+.+||+.-..
T Consensus 192 ~~~--~h~~~~~~l~Wd~------------~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 192 TFN--GHTGEVTCLKWDP------------GQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred EEc--CcccceEEEEEcC------------CCcEEEeccccCceEEEeccCCc
Confidence 444 8999999999998 55666777889999999996443
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.15 E-value=0.00017 Score=74.67 Aligned_cols=153 Identities=10% Similarity=0.108 Sum_probs=104.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeC------CCCCcEEEEEEccCC-----CeEEEEEeCCCeEEEEECCC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD------PNEQVLRVLDYSRNS-----RHLLVTAGDDGTLHLWDTTG 69 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~------~~~~~VssLafSpdg-----~~lLaSGs~DGtI~IWDl~t 69 (633)
+|+||+..||.+...|+|++||+.. ..+..+.. .....|..+.|.+.. ...|+.-..+|.++-|-+..
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~ 128 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV 128 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence 6999999999999999999999854 44444332 223566667775432 23567778888888887632
Q ss_pred C--Cc--eeEE--e-ccCCCCeEEEEEcCCCCEEEEEeCCC-----------eEEEEeCCCCce----------------
Q 006743 70 R--SP--KVSW--L-KQHSAPTAGISFSSDDKIIASVGLDK-----------KLYTYDPGSRRP---------------- 115 (633)
Q Consensus 70 ~--~~--~v~~--l-~~H~~~VtsLafSPdg~~LaSgS~DG-----------tVrIWDlrtgk~---------------- 115 (633)
+ +. ..+. + ..+...|.++.++|..++|++|+... -+..|-+-++.+
T Consensus 129 gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~ 208 (282)
T PF15492_consen 129 GTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASS 208 (282)
T ss_pred ccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccc
Confidence 1 11 1111 2 23467899999999989888876321 245554422111
Q ss_pred -----ee-----Ee----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743 116 -----SS-----CI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 116 -----v~-----~i----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~ 154 (633)
.+ .+ .....|..|..+|||..||+.+.+|.|.+|++.+.
T Consensus 209 ~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 209 KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 00 11 13567899999999999999999999999999875
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=1.7e-05 Score=89.48 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=114.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCce---------------eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAK---------------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW 65 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~---------------v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IW 65 (633)
+|+.+..++|.|+.||.++|..+.+... -+.+.+ |...|..+.|+.+.+ .|-+...+|.|.||
T Consensus 21 ~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~Q-KLTtSDt~GlIiVW 98 (1189)
T KOG2041|consen 21 EWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQ-KLTTSDTSGLIIVW 98 (1189)
T ss_pred EEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccc-cccccCCCceEEEE
Confidence 4888899999999999999998865321 123444 677888899998877 79999999999999
Q ss_pred ECCCCCceeEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC
Q 006743 66 DTTGRSPKVSWL-KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG 144 (633)
Q Consensus 66 Dl~t~~~~v~~l-~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG 144 (633)
-+-.+......+ ......|.+++|+-||..|+.+-.||.|.+=.+...+....--.......+.|++|.+.++.+-.+|
T Consensus 99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ang 178 (1189)
T KOG2041|consen 99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANG 178 (1189)
T ss_pred eeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCC
Confidence 986655322222 2345678999999999999999999998887766544322211223345788999999999999999
Q ss_pred eEEEEECCC
Q 006743 145 RVVFYDIRG 153 (633)
Q Consensus 145 sV~IWDlrs 153 (633)
.+++||...
T Consensus 179 e~hlydnqg 187 (1189)
T KOG2041|consen 179 ETHLYDNQG 187 (1189)
T ss_pred cEEEecccc
Confidence 999999874
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.09 E-value=0.00087 Score=69.49 Aligned_cols=195 Identities=14% Similarity=0.168 Sum_probs=120.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCC--ceeEEEeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE--
Q 006743 2 YNCKDEHLASISLSGDLILHNLASG--AKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS-- 75 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tg--k~v~~~~~--~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~-- 75 (633)
.+.||+.||+. .|..|.|-..++. ..+.+.+. ......+-++|+||+. +||.+...|+|++||+.+......
T Consensus 5 ~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 5 LSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred ecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEecccceeEEcCc
Confidence 45788887765 6778888776553 23233222 2234456799999998 899999999999999987552211
Q ss_pred ---EeccCCCCeEEEEEcCC------CCEEEEEeCCCeEEEEeCCCC-----ceeeEe----eCCCCeEEEEEecCCCEE
Q 006743 76 ---WLKQHSAPTAGISFSSD------DKIIASVGLDKKLYTYDPGSR-----RPSSCI----TYEAPFSSLAFIDDDWIL 137 (633)
Q Consensus 76 ---~l~~H~~~VtsLafSPd------g~~LaSgS~DGtVrIWDlrtg-----k~v~~i----~h~~~ItsLafSPdG~~L 137 (633)
....-...|..+.|.+. ...|++...+|.++-|-+..+ +....+ .+...|.++.++|.-+.|
T Consensus 83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LL 162 (282)
T PF15492_consen 83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLL 162 (282)
T ss_pred ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEE
Confidence 11122356777878652 225778888888887765322 222232 257889999999998888
Q ss_pred EEEEcC----C-------eEEEEECCCCCCceEEEeec--------------------------CCCCCeeEEEEccCCC
Q 006743 138 TAGTSN----G-------RVVFYDIRGKPQPLTVLRAC--------------------------SSSEAVSSLCWQRAKP 180 (633)
Q Consensus 138 atGs~D----G-------sV~IWDlrs~~k~v~~l~~~--------------------------~H~~~VtsLafsPdg~ 180 (633)
++|+.. + -+..|.+-+...-.+..... .....|..|..+|
T Consensus 163 lVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP--- 239 (282)
T PF15492_consen 163 LVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP--- 239 (282)
T ss_pred EEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC---
Confidence 777641 1 25667655432211111100 1233444555555
Q ss_pred eEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 181 VFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 181 ~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
++..|++...+|.|.+|++-.
T Consensus 240 ---------dg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 240 ---------DGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred ---------CCCEEEEEEcCCeEEEEecCc
Confidence 566666668899999998843
No 288
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.08 E-value=0.00021 Score=80.13 Aligned_cols=139 Identities=15% Similarity=0.168 Sum_probs=95.3
Q ss_pred CcEEEEEEccCCCeEEEEEe----CCCe----EEEEECCCCCce--eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 006743 38 QVLRVLDYSRNSRHLLVTAG----DDGT----LHLWDTTGRSPK--VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT 107 (633)
Q Consensus 38 ~~VssLafSpdg~~lLaSGs----~DGt----I~IWDl~t~~~~--v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrI 107 (633)
+++ ++.|+...++.+.+.. .+|. -.+|++...+.. ..+-......|.|++++|+...++.|+.||.|.+
T Consensus 207 dPl-~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPL-DVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcE-EEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 444 3677765555555532 3443 457777554422 1122356788999999999999999999999999
Q ss_pred EeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE----------EE---eecCCCCCeeEEE
Q 006743 108 YDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT----------VL---RACSSSEAVSSLC 174 (633)
Q Consensus 108 WDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~----------~l---~~~~H~~~VtsLa 174 (633)
||...+... .....-.++.++|+|+|.++++|+..|.+.+||+.-..-... ++ ..+.+...+..+.
T Consensus 286 yD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iq 364 (545)
T PF11768_consen 286 YDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQ 364 (545)
T ss_pred EEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeE
Confidence 999776433 335566788999999999999999999999999874321111 11 2224555667777
Q ss_pred EccC
Q 006743 175 WQRA 178 (633)
Q Consensus 175 fsPd 178 (633)
|.+.
T Consensus 365 W~~~ 368 (545)
T PF11768_consen 365 WAPA 368 (545)
T ss_pred eccC
Confidence 7754
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.07 E-value=0.0011 Score=67.40 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=106.6
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEe---CC-CCCcEEEEEEccCCCeEEEEEeCC--------CeEEEEECCCCCce
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELK---DP-NEQVLRVLDYSRNSRHLLVTAGDD--------GTLHLWDTTGRSPK 73 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~---~~-~~~~VssLafSpdg~~lLaSGs~D--------GtI~IWDl~t~~~~ 73 (633)
+..|+.+..+ .+.++|..+++....+. .. .....+.+++.++|+ +.++.... |.|+.++.. .+
T Consensus 51 ~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~-- 125 (246)
T PF08450_consen 51 DGRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK-- 125 (246)
T ss_dssp TSEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE--
T ss_pred CCEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce--
Confidence 3555556554 45666988886443332 22 346678899999998 66665443 557777777 33
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCce----eeEe-e--C-CCCeEEEEEecCCCEEEEEEcCC
Q 006743 74 VSWLKQHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRP----SSCI-T--Y-EAPFSSLAFIDDDWILTAGTSNG 144 (633)
Q Consensus 74 v~~l~~H~~~VtsLafSPdg~~La-SgS~DGtVrIWDlrtgk~----v~~i-~--h-~~~ItsLafSPdG~~LatGs~DG 144 (633)
+..+...-...+.|+|+|+++.|+ +-+..+.|..||+..... ...+ . . .+....++++.+|++.++....+
T Consensus 126 ~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~ 205 (246)
T PF08450_consen 126 VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG 205 (246)
T ss_dssp EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT
T ss_pred EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC
Confidence 333444456689999999998775 556778899999863221 1122 1 2 23478899999999988888899
Q ss_pred eEEEEECCCCCCceEEEeecCCCCCeeEEEEc
Q 006743 145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ 176 (633)
Q Consensus 145 sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafs 176 (633)
.|.++|.+ + +.+..+... ...+++++|-
T Consensus 206 ~I~~~~p~-G-~~~~~i~~p--~~~~t~~~fg 233 (246)
T PF08450_consen 206 RIVVFDPD-G-KLLREIELP--VPRPTNCAFG 233 (246)
T ss_dssp EEEEEETT-S-CEEEEEE-S--SSSEEEEEEE
T ss_pred EEEEECCC-c-cEEEEEcCC--CCCEEEEEEE
Confidence 99999998 3 345556643 3489999994
No 290
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.05 E-value=9e-05 Score=89.50 Aligned_cols=172 Identities=16% Similarity=0.189 Sum_probs=111.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc------------------------eeEEEeC----------------------
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGA------------------------KAAELKD---------------------- 34 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk------------------------~v~~~~~---------------------- 34 (633)
+||||++.|+.++.+|+|.+..- +.. ....|.|
T Consensus 127 ~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 127 SWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred EECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence 59999999999999999887643 111 1111111
Q ss_pred --CCCCcEEEEEEccCCCeEEEEEeC---C---CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeC---CC
Q 006743 35 --PNEQVLRVLDYSRNSRHLLVTAGD---D---GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL---DK 103 (633)
Q Consensus 35 --~~~~~VssLafSpdg~~lLaSGs~---D---GtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~---DG 103 (633)
.....+ .|.|-.||. +||+.+. + ..|+||+-++.- ..+...-.+--.+++|.|.|++||+.-. ..
T Consensus 206 ~s~dd~~~-~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~ReG~L--~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 206 LSWDDGRV-RISWRGDGE-YFAVSSVEPETGSRRVIRVYSREGEL--QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred cccCCCce-EEEECCCCc-EEEEEEEEcCCCceeEEEEECCCceE--EeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence 011233 388999998 6776653 2 579999987431 2222233334467899999999999875 34
Q ss_pred eEEEEeCCCCceeeEe-----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 006743 104 KLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA 178 (633)
Q Consensus 104 tVrIWDlrtgk~v~~i-----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPd 178 (633)
.|.+|.- +|.....+ .....|..++|+.|+.+||+...|. |.+|-..+..--++.--.+.....+..+.|+|.
T Consensus 282 ~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 282 DVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred EEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence 5677763 33333222 2456799999999999999988766 999999886322222222334455666999995
Q ss_pred C
Q 006743 179 K 179 (633)
Q Consensus 179 g 179 (633)
.
T Consensus 360 ~ 360 (928)
T PF04762_consen 360 K 360 (928)
T ss_pred C
Confidence 3
No 291
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=0.00016 Score=80.09 Aligned_cols=196 Identities=10% Similarity=0.185 Sum_probs=117.7
Q ss_pred ccCCCCEEEEEEC-----------CCcEEEEECCCCceeEEEeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 006743 2 YNCKDEHLASISL-----------SGDLILHNLASGAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (633)
Q Consensus 2 FSpdG~~LaSgs~-----------DG~I~IWDl~tgk~v~~~~~--~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~ 68 (633)
|||+.+||++-+. ...|+|||+.+|...+.|.. ........+.|+.|+. ++|.... ..|.||+..
T Consensus 257 fSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtp 334 (698)
T KOG2314|consen 257 FSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETP 334 (698)
T ss_pred cCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecC
Confidence 8999999998532 24799999999998887765 2233445578999987 6665544 678999876
Q ss_pred CCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC----------------C-----------------------------
Q 006743 69 GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD----------------K----------------------------- 103 (633)
Q Consensus 69 t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D----------------G----------------------------- 103 (633)
.-... ..-.-.-..|..+.|+|.+++||.=... .
T Consensus 335 sf~ll-d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvd 413 (698)
T KOG2314|consen 335 SFMLL-DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVD 413 (698)
T ss_pred ceeee-cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEE
Confidence 53311 1001112346666666666665532110 0
Q ss_pred ------------eEEEEeCCCCc-eeeEeeCCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCC
Q 006743 104 ------------KLYTYDPGSRR-PSSCITYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSS 167 (633)
Q Consensus 104 ------------tVrIWDlrtgk-~v~~i~h~~~ItsLafSPdG~~LatGs~---DGsV~IWDlrs~~k~v~~l~~~~H~ 167 (633)
.+-|+.++... ++........|...+|-|.|+.+++-+. ..+|.+|.+++.......+..+ ..
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-dk 492 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-DK 492 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-cc
Confidence 11111111111 1112234556778899999988776544 3569999988432222222222 12
Q ss_pred CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 168 ~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
...+.+.|+|.|++++.+. ++ +..+.+..+|...
T Consensus 493 ~~~N~vfwsPkG~fvvva~-------l~--s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAA-------LV--SRRGDLEFYDTDY 526 (698)
T ss_pred cccceEEEcCCCcEEEEEE-------ec--ccccceEEEecch
Confidence 5577899999999998761 22 2567788888754
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=2.3e-05 Score=88.40 Aligned_cols=146 Identities=12% Similarity=0.188 Sum_probs=111.0
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--------------eEEeccCCCCeEEEEEcCCCCEEEEEe
Q 006743 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--------------VSWLKQHSAPTAGISFSSDDKIIASVG 100 (633)
Q Consensus 35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~--------------v~~l~~H~~~VtsLafSPdg~~LaSgS 100 (633)
+....+.|+.|+.... ++++|+.||.++|..+.+.... -+++.+|+..|..+.|+.+.+.|-+..
T Consensus 12 PnnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 3456688999998876 8999999999999988543211 346789999999999999999999999
Q ss_pred CCCeEEEEeCCCCceeeEe---eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743 101 LDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (633)
Q Consensus 101 ~DGtVrIWDlrtgk~v~~i---~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP 177 (633)
.+|.|.+|-+-.+.-.-.. ..+..|.+++|+-||..|...-.||.|.+=.+.... ++...-.......+.|++
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR----IwgKeLkg~~l~hv~ws~ 166 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR----IWGKELKGQLLAHVLWSE 166 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce----ecchhcchheccceeecc
Confidence 9999999999877644333 356779999999999999999999999887777652 111111122345678888
Q ss_pred CCCeEEEe
Q 006743 178 AKPVFIDE 185 (633)
Q Consensus 178 dg~~Las~ 185 (633)
|.+.++..
T Consensus 167 D~~~~Lf~ 174 (1189)
T KOG2041|consen 167 DLEQALFK 174 (1189)
T ss_pred cHHHHHhh
Confidence 76655443
No 293
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.02 E-value=1.3e-06 Score=97.65 Aligned_cols=194 Identities=14% Similarity=0.177 Sum_probs=129.7
Q ss_pred CCEEEEEECCCcEEEEECCCCcee-EEEeCCCCCcEEEEEEccCCCeEEEEEe----CCCeEEEEECCCC--Cce--eEE
Q 006743 6 DEHLASISLSGDLILHNLASGAKA-AELKDPNEQVLRVLDYSRNSRHLLVTAG----DDGTLHLWDTTGR--SPK--VSW 76 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v-~~~~~~~~~~VssLafSpdg~~lLaSGs----~DGtI~IWDl~t~--~~~--v~~ 76 (633)
...+++|..+|.|.+-.+....-- .++...+...+++++|++-+.+.||+|- .|-.+.|||+... .++ ...
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f 149 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF 149 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence 346788999999999887654332 5555567778899999997766788774 3567999999765 221 111
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEec-CCCEEEEEEcCCeEEEEE-CCCC
Q 006743 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYD-IRGK 154 (633)
Q Consensus 77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSP-dG~~LatGs~DGsV~IWD-lrs~ 154 (633)
..+.......++|..+.+++++|...+.++++|+|........-....+..+...| .+.|++.-. ||.|-+|| .++-
T Consensus 150 s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni 228 (783)
T KOG1008|consen 150 SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI 228 (783)
T ss_pred ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhh
Confidence 11234456689999999999999999999999998432221111233566677788 566665544 99999999 6665
Q ss_pred CCceEEEeecC--CCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 155 PQPLTVLRACS--SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 155 ~k~v~~l~~~~--H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
+.++..+.... ....+..++|+|.. .+.+.+..-..+.|+.+|++.
T Consensus 229 enpl~~i~~~~N~~~~~l~~~aycPtr----------tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 229 ENPLQIILRNENKKPKQLFALAYCPTR----------TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccHHHHHhhCCCCcccceeeEEeccCC----------cchhhhhccCcceEEEecccc
Confidence 55554443111 11248999999942 334444444567888888854
No 294
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00038 Score=80.61 Aligned_cols=181 Identities=18% Similarity=0.296 Sum_probs=123.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe-----EEEEECCCC---C-
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-----LHLWDTTGR---S- 71 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt-----I~IWDl~t~---~- 71 (633)
+|++.+..+|.|+.+|.|.+++ ..-+.+..++....+.|.. -|.-+++++|++.+.|+. |+|||++.. .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~-L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQF-LYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhH-hhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4778889999999999999988 3455557777644444543 455566568888877654 999999533 1
Q ss_pred ce-e--EEecc-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC---CCC--ceeeEeeCCCCeEEEEEecCCCEEE
Q 006743 72 PK-V--SWLKQ-----HSAPTAGISFSSDDKIIASVGLDKKLYTYDP---GSR--RPSSCITYEAPFSSLAFIDDDWILT 138 (633)
Q Consensus 72 ~~-v--~~l~~-----H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl---rtg--k~v~~i~h~~~ItsLafSPdG~~La 138 (633)
+. + +.+.. ...++.+++.+.+-+.+|+|-.||.|..+.- |.. +.......+.+|+.+++..++.-++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 11 1 12222 2457889999999999999999999998842 111 2222234678999999999988744
Q ss_pred EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 139 tGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
-...-..|.+|.+.+......++. .|...+.|..+++....++++
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld--~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD--NNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec--cCCccceeeecCCCCccEEEe
Confidence 444446799999986542233344 678889999998866534443
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=1.5e-05 Score=83.97 Aligned_cols=154 Identities=13% Similarity=0.124 Sum_probs=112.1
Q ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----ceeeE
Q 006743 44 DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-----RPSSC 118 (633)
Q Consensus 44 afSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtg-----k~v~~ 118 (633)
+|+-+-.-+-++.+.+-.|-+-|++++- .+.+ .....|.++.|.-.+++++.|+.+|.|..+|+|.+ .+...
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~--~qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGH--QQSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccc--cccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 5654322233566677888888988775 2333 36678999999988999999999999999999864 45667
Q ss_pred eeCCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 006743 119 ITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG 197 (633)
Q Consensus 119 i~h~~~ItsLafSP-dG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSg 197 (633)
+-|...|+++..-. ++.+|++.+-+|+|.+||+|..+....+..-.+|...-.-+-++- ...+..++++
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v----------~~eeg~I~s~ 364 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV----------KEEEGSIFSV 364 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc----------ccccceEEEc
Confidence 78999999998877 788999999999999999997643222333226654444333332 2255566667
Q ss_pred eCCCeEEccCCCC
Q 006743 198 AVGDSILMPDPLP 210 (633)
Q Consensus 198 s~Dg~IkIWDlr~ 210 (633)
+.|...+||.++.
T Consensus 365 GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 365 GDDCYTRIWSLDS 377 (425)
T ss_pred cCeeEEEEEeccc
Confidence 8899999998863
No 296
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.98 E-value=2.1e-05 Score=56.75 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=34.5
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 006743 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109 (633)
Q Consensus 74 v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWD 109 (633)
+..+.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 577899999999999999999999999999999998
No 297
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.98 E-value=0.00049 Score=75.76 Aligned_cols=191 Identities=13% Similarity=0.162 Sum_probs=127.4
Q ss_pred ccCCCCEEEEEECCC---------------cEEEEECCCCceeEEEeCCCCC--cEEEEEEccCCCeEEEEEeCCCeEEE
Q 006743 2 YNCKDEHLASISLSG---------------DLILHNLASGAKAAELKDPNEQ--VLRVLDYSRNSRHLLVTAGDDGTLHL 64 (633)
Q Consensus 2 FSpdG~~LaSgs~DG---------------~I~IWDl~tgk~v~~~~~~~~~--~VssLafSpdg~~lLaSGs~DGtI~I 64 (633)
|+|+++||.+-...+ .+.+||..+|..+..+...... ....+.|+-++. +++-. ....++|
T Consensus 79 fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~i 156 (561)
T COG5354 79 FSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK-YVARV-VGSSLYI 156 (561)
T ss_pred cCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch-hhhhh-ccCeEEE
Confidence 789999999865443 4999999999999988764433 233678988876 44333 4567999
Q ss_pred EECCCCCce--eEEeccCCCCeEEEEEcCC--CCEEEE-----EeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCC
Q 006743 65 WDTTGRSPK--VSWLKQHSAPTAGISFSSD--DKIIAS-----VGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDD 134 (633)
Q Consensus 65 WDl~t~~~~--v~~l~~H~~~VtsLafSPd--g~~LaS-----gS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG 134 (633)
+++...-.. .+.++ ...|....|+|. +..|+. .+.++.+++|.+..+..+.... .+..-..+.|++.|
T Consensus 157 ~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g 234 (561)
T COG5354 157 HEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG 234 (561)
T ss_pred EecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC
Confidence 997322211 11222 356888999994 444554 4567899999998766665443 23334458899999
Q ss_pred CEEEEEE-----------cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeE
Q 006743 135 WILTAGT-----------SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSI 203 (633)
Q Consensus 135 ~~LatGs-----------~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~I 203 (633)
++|++-. ....++|+++.....++.. .-.++|...+|.|.++.++ ++.|-.+..+
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~----~~~~pVhdf~W~p~S~~F~----------vi~g~~pa~~ 300 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK----DLKDPVHDFTWEPLSSRFA----------VISGYMPASV 300 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeecccccceec----cccccceeeeecccCCcee----------EEecccccce
Confidence 8876431 1245889998865443332 3568999999999755443 4455667777
Q ss_pred EccCCCC
Q 006743 204 LMPDPLP 210 (633)
Q Consensus 204 kIWDlr~ 210 (633)
.++|++-
T Consensus 301 s~~~lr~ 307 (561)
T COG5354 301 SVFDLRG 307 (561)
T ss_pred eeccccc
Confidence 8888763
No 298
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.96 E-value=0.00037 Score=84.28 Aligned_cols=190 Identities=18% Similarity=0.231 Sum_probs=125.2
Q ss_pred ccCCCCEEEEEECCCcEEEE----ECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------
Q 006743 2 YNCKDEHLASISLSGDLILH----NLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-------- 69 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IW----Dl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t-------- 69 (633)
|-++...++.+..+|.|.++ +..+ ...++.+.....|.+++|+||++ +|+....+++|.+.+..-
T Consensus 83 yl~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l 159 (928)
T PF04762_consen 83 YLADSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPL 159 (928)
T ss_pred eccCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeec
Confidence 34566677888899999999 4433 23333344567899999999998 788888888888774310
Q ss_pred -----C--Cc-------eeEE-------------------------eccCCCCeEEEEEcCCCCEEEEEeC---C---Ce
Q 006743 70 -----R--SP-------KVSW-------------------------LKQHSAPTAGISFSSDDKIIASVGL---D---KK 104 (633)
Q Consensus 70 -----~--~~-------~v~~-------------------------l~~H~~~VtsLafSPdg~~LaSgS~---D---Gt 104 (633)
+ +. +... +. +...-..|+|-.||.+||+.+- + +.
T Consensus 160 ~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~ 238 (928)
T PF04762_consen 160 DSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRV 238 (928)
T ss_pred CccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeE
Confidence 0 00 0000 11 2334567899999999998774 2 58
Q ss_pred EEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCC
Q 006743 105 LYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP 180 (633)
Q Consensus 105 VrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~---DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~ 180 (633)
||||+-+ |.....- ...+--.+++|.|.|++||+... ...|.+|.-+....-...+........|..++|++++.
T Consensus 239 iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~ 317 (928)
T PF04762_consen 239 IRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE 317 (928)
T ss_pred EEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC
Confidence 9999965 5544333 23444567899999999998765 35588887665432223333224567799999999999
Q ss_pred eEEEeccCCCCeEEEEee
Q 006743 181 VFIDETTCKAETALLGGA 198 (633)
Q Consensus 181 ~Las~s~~sd~~lLlSgs 198 (633)
.|+... .+...|++.+
T Consensus 318 iLAv~~--~~~vqLWt~~ 333 (928)
T PF04762_consen 318 ILAVWL--EDRVQLWTRS 333 (928)
T ss_pred EEEEEe--cCCceEEEee
Confidence 988752 3445566554
No 299
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=3.1e-06 Score=97.00 Aligned_cols=186 Identities=16% Similarity=0.197 Sum_probs=128.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEecc
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG-tI~IWDl~t~~~~v~~l~~ 79 (633)
||+-+.++|++|...|.|++|++.+|.....+.+ |...|+.|.=+.+|...|.+++... -..+|++......++.+.+
T Consensus 1108 afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1108 AFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred EeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCchHHHhccccccCccccccc
Confidence 5788889999999999999999999998888876 6777888888889985555555555 5789999654434454433
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~ 154 (633)
-.++.|+..-..-+.|+......+||+.++.+...+ +....-++..|+|+...|+ .|| .+||+|..
T Consensus 1187 ----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1187 ----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred ----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccH
Confidence 356788864433344555567899999998776542 2223347788999887765 455 57999987
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCCCCcc
Q 006743 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (633)
Q Consensus 155 ~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~~ss~ 217 (633)
+.++.+..+. --..-.|+|+|..++.. + .|||+|.|.-.++.
T Consensus 1258 -~aIh~FD~ft---~~~~G~FHP~g~eVIIN------------S-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1258 -EAIHRFDQFT---DYGGGGFHPSGNEVIIN------------S-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred -HHHhhhhhhe---ecccccccCCCceEEee------------c-----hhhhhHHHHHHhcC
Confidence 3334333221 11223588876655543 1 48999998876543
No 300
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.95 E-value=0.0021 Score=69.66 Aligned_cols=142 Identities=6% Similarity=0.027 Sum_probs=97.1
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe---------CCCeEEEEECCCC
Q 006743 5 KDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDTTGR 70 (633)
Q Consensus 5 dG~~LaSgs~D-----G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs---------~DGtI~IWDl~t~ 70 (633)
+++++++-... +.|.+.|..+++.+..+....... .+ ++|+++.++++.. .+..|.+||..+.
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 34555544333 899999999999998888644333 34 8999997777777 7999999999998
Q ss_pred CceeEEeccC-------CCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEE
Q 006743 71 SPKVSWLKQH-------SAPTAGISFSSDDKIIASVGL--DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT 141 (633)
Q Consensus 71 ~~~v~~l~~H-------~~~VtsLafSPdg~~LaSgS~--DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs 141 (633)
+.. ..+.-- ......++++|||+++++... +..|.++|+.+++.+..+...+...-...+.+..++ -+
T Consensus 88 ~~~-~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~--~~ 164 (352)
T TIGR02658 88 LPI-ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFM--HC 164 (352)
T ss_pred cEE-eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEE--Ee
Confidence 853 333321 223457899999999998773 679999999999999988765444333443333332 23
Q ss_pred cCCeEEEEECC
Q 006743 142 SNGRVVFYDIR 152 (633)
Q Consensus 142 ~DGsV~IWDlr 152 (633)
.||......+.
T Consensus 165 ~Dg~~~~v~~d 175 (352)
T TIGR02658 165 RDGSLAKVGYG 175 (352)
T ss_pred ecCceEEEEec
Confidence 45554444443
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00035 Score=80.39 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=100.7
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V 84 (633)
.++.|+.|..+|.|++++... .. ..... |... ..+|. ++++|+.||+|.|-.+-+... .+......++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~-~~-~~~~~-~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~--~~~~df~rpi 115 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQG-NP-KTNFD-HSSS------ILEGE-YVASCSDDGKVVIGSLFTDDE--ITQYDFKRPI 115 (846)
T ss_pred hcceeeeccccceEEEEecCC-cc-ccccc-cccc------ccCCc-eEEEecCCCcEEEeeccCCcc--ceeEecCCcc
Confidence 367899999999999999743 33 22222 2222 45677 899999999999999876663 2223456889
Q ss_pred EEEEEcCC-----CCEEEEEeCCCeEEEEeCC---CCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743 85 AGISFSSD-----DKIIASVGLDKKLYTYDPG---SRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 85 tsLafSPd-----g~~LaSgS~DGtVrIWDlr---tgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~ 155 (633)
..++++|+ .+.+++|+..| +.++.-+ ....+......++|.++.|. |++||-++.+| |+|||.....
T Consensus 116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 116 KSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQ 190 (846)
T ss_pred eeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccc
Confidence 99999997 67899999998 7777643 22333334578999999997 88999998888 9999998763
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.91 E-value=0.0037 Score=66.19 Aligned_cols=196 Identities=16% Similarity=0.169 Sum_probs=132.2
Q ss_pred ccC-CCCEEEEEECCCc-EEEEECCCCceeEEEeCCCCCcEE-EEEEccCCCeEEEEEe-----CCCeEEEEECCCCCce
Q 006743 2 YNC-KDEHLASISLSGD-LILHNLASGAKAAELKDPNEQVLR-VLDYSRNSRHLLVTAG-----DDGTLHLWDTTGRSPK 73 (633)
Q Consensus 2 FSp-dG~~LaSgs~DG~-I~IWDl~tgk~v~~~~~~~~~~Vs-sLafSpdg~~lLaSGs-----~DGtI~IWDl~t~~~~ 73 (633)
.+| .+..++.+-.-|+ ..+||..+++....+......-.+ .-+|+++|+ +|++.- ..|.|-|||....-..
T Consensus 12 ~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~-~LytTEnd~~~g~G~IgVyd~~~~~~r 90 (305)
T PF07433_consen 12 AHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR-LLYTTENDYETGRGVIGVYDAARGYRR 90 (305)
T ss_pred eCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC-EEEEeccccCCCcEEEEEEECcCCcEE
Confidence 466 4456666766665 678999999988777643222111 357999999 555543 3578999999954445
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEe------------------CCCeEEEEeCCCCceeeEee-----CCCCeEEEEE
Q 006743 74 VSWLKQHSAPTAGISFSSDDKIIASVG------------------LDKKLYTYDPGSRRPSSCIT-----YEAPFSSLAF 130 (633)
Q Consensus 74 v~~l~~H~~~VtsLafSPdg~~LaSgS------------------~DGtVrIWDlrtgk~v~~i~-----h~~~ItsLaf 130 (633)
+..+..|.-.-..+.+.||++.|+++. .+-.|.+.|.++|+.+.... |.-.|..+++
T Consensus 91 i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~ 170 (305)
T PF07433_consen 91 IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV 170 (305)
T ss_pred EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEe
Confidence 677778877788899999998887763 23357778888888776532 5668999999
Q ss_pred ecCCCEEEEEEcCCe-------EEEEECCCCCCceEEEeec-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006743 131 IDDDWILTAGTSNGR-------VVFYDIRGKPQPLTVLRAC-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (633)
Q Consensus 131 SPdG~~LatGs~DGs-------V~IWDlrs~~k~v~~l~~~-----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs 198 (633)
.++|..++..-..|. |.+++.... +..+... .-.+.|-+|++++++.+++. ++-
T Consensus 171 ~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~-----------tsP 236 (305)
T PF07433_consen 171 DGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV-----------TSP 236 (305)
T ss_pred cCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCCCEEEE-----------ECC
Confidence 999988777665543 555554432 1222211 23477889999887655543 444
Q ss_pred CCCeEEccCCCCCC
Q 006743 199 VGDSILMPDPLPSV 212 (633)
Q Consensus 199 ~Dg~IkIWDlr~~~ 212 (633)
..+.+.+||...-.
T Consensus 237 rGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 237 RGGRVAVWDAATGR 250 (305)
T ss_pred CCCEEEEEECCCCC
Confidence 56777788765433
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.85 E-value=0.0025 Score=63.53 Aligned_cols=184 Identities=15% Similarity=0.081 Sum_probs=109.7
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC---
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS--- 81 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~--- 81 (633)
+++++++++.++.|+.||..+|+.+..+..... ..... ...+ . .++.+..++.|+.+|..+++..-.......
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~-~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDG-G-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEET-T-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecc-c-ccccccceeeeEecccCCcceeeeecccccccc
Confidence 577888889999999999999998887774221 11111 2223 3 466677888999999988884333112111
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCC-C----------eEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA-P----------FSSLAFIDDDWILTAGTSNGRVVFYD 150 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~-~----------ItsLafSPdG~~LatGs~DGsV~IWD 150 (633)
..........++..++.+..++.|..+|+++|+.+....... . +..-....++ .++.+..++.+..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence 111222233348888999989999999999999876663221 1 1122222234 777788788644449
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCC
Q 006743 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (633)
Q Consensus 151 lrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~ 211 (633)
+.+++.. .... ...+..+ ... .++.+++.. .++.|..||++..
T Consensus 190 ~~tg~~~---w~~~--~~~~~~~-~~~-----------~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 190 LATGEKL---WSKP--ISGIYSL-PSV-----------DGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp TTTTEEE---EEEC--SS-ECEC-EEC-----------CCTEEEEEE-TTTEEEEEETTTT
T ss_pred CCCCCEE---EEec--CCCccCC-cee-----------eCCEEEEEe-CCCEEEEEECCCC
Confidence 9988422 2211 1112211 111 234444444 7899999998653
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=7.1e-05 Score=82.48 Aligned_cols=146 Identities=18% Similarity=0.242 Sum_probs=102.9
Q ss_pred CCCEEEEEECCCcEEEEECCC-Cc------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743 5 KDEHLASISLSGDLILHNLAS-GA------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~t-gk------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l 77 (633)
+.+.++++++|.+|++|.++. +. +..+++. |+..|..+.|..+.+ +++ +.||-|++||---+....+..
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr-~i~--ScD~giHlWDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLR-SIA--SCDGGIHLWDPFIGRLLAQME 821 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccc-eee--eccCcceeecccccchhHhhh
Confidence 456788999999999999863 11 3334444 777889999998876 444 568999999974444322111
Q ss_pred --ccCCCCeEEEEEcC--CCCEE-EEEeCCCeEEEEeCCCCceeeEee------CCCCeEEEEEecCCCEEEEEEcCCeE
Q 006743 78 --KQHSAPTAGISFSS--DDKII-ASVGLDKKLYTYDPGSRRPSSCIT------YEAPFSSLAFIDDDWILTAGTSNGRV 146 (633)
Q Consensus 78 --~~H~~~VtsLafSP--dg~~L-aSgS~DGtVrIWDlrtgk~v~~i~------h~~~ItsLafSPdG~~LatGs~DGsV 146 (633)
..| +.+..+..-+ +...+ +-++...+|+++|.|.+..+..+. ..+.+.+++..+.|++++++-.+|.|
T Consensus 822 dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci 900 (1034)
T KOG4190|consen 822 DAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCI 900 (1034)
T ss_pred cCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcE
Confidence 122 2233333333 33333 344778899999999887665552 34568999999999999999999999
Q ss_pred EEEECCCCC
Q 006743 147 VFYDIRGKP 155 (633)
Q Consensus 147 ~IWDlrs~~ 155 (633)
.+.|.|+++
T Consensus 901 ~~LDaR~G~ 909 (1034)
T KOG4190|consen 901 AILDARNGK 909 (1034)
T ss_pred EEEecCCCc
Confidence 999999983
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00085 Score=77.34 Aligned_cols=141 Identities=21% Similarity=0.271 Sum_probs=104.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC----CCeEEEEEeCCCeEEEEECCCCCce-eEEecc
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN----SRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQ 79 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpd----g~~lLaSGs~DGtI~IWDl~t~~~~-v~~l~~ 79 (633)
+|+++++|+.||+|.|..+-+.+..+.+. -...+.+|+++|+ ....+++|+..| +.++.-.--... -..+..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 69999999999999999998888877765 3467888999998 223689999989 888875321111 123566
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC-------CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h-------~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
..++|.++.|. |++||-++.+| |++||+.+++.+..+.. ......+.|.++. .|+.| +..+|+|..++
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK 233 (846)
T ss_pred CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence 77999999998 89999999888 89999999887766632 1223457777554 44444 44568888887
Q ss_pred C
Q 006743 153 G 153 (633)
Q Consensus 153 s 153 (633)
.
T Consensus 234 ~ 234 (846)
T KOG2066|consen 234 K 234 (846)
T ss_pred c
Confidence 3
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.78 E-value=6.6e-05 Score=54.13 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=33.0
Q ss_pred ceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743 114 RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (633)
Q Consensus 114 k~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWD 150 (633)
+++..+ .|...|.+|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 345555 6899999999999999999999999999997
No 307
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.77 E-value=0.0027 Score=68.61 Aligned_cols=142 Identities=12% Similarity=0.163 Sum_probs=94.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V 84 (633)
.+.++++++.+|.|+.+|..+|+.+-.+.... .....+.. ++. .++.++.++.|+.+|..+++. .+.......+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~v--~~~-~v~v~~~~g~l~ald~~tG~~--~W~~~~~~~~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVGA--DGG-LVFVGTEKGEVIALDAEDGKE--LWRAKLSSEV 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceEE--cCC-EEEEEcCCCEEEEEECCCCcE--eeeeccCcee
Confidence 36678889999999999999999887665322 11122222 344 577888999999999988873 2222222333
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeE------EEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFS------SLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~It------sLafSPdG~~LatGs~DGsV~IWDlrs~~ 155 (633)
.+.-.. .+..++.++.++.|+.||.++++.+.......... +.... +..++.+..+|.|+.+|+++++
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 221111 45677888889999999999998876654332221 11222 3477888889999999998874
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.76 E-value=0.006 Score=64.68 Aligned_cols=170 Identities=13% Similarity=0.090 Sum_probs=109.0
Q ss_pred CccCCCCEEEEEEC-----CCcEEEEECC-CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe-----------------
Q 006743 1 MYNCKDEHLASISL-----SGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG----------------- 57 (633)
Q Consensus 1 AFSpdG~~LaSgs~-----DG~I~IWDl~-tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs----------------- 57 (633)
+|++||++|++.-+ .|.|-|||.. +.+.+.++..+- -.-..+.+.|+++ .|+.+.
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G-IGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG-IGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC-cChhhEEEcCCCC-EEEEEcCCCccCcccCceecChh
Confidence 58999999998643 4789999998 667788887533 2234578999997 344431
Q ss_pred -CCCeEEEEECCCCCceeE-Ee--ccCCCCeEEEEEcCCCCEEEEEeCCC-------eEEEEeCCCCceeeEe-------
Q 006743 58 -DDGTLHLWDTTGRSPKVS-WL--KQHSAPTAGISFSSDDKIIASVGLDK-------KLYTYDPGSRRPSSCI------- 119 (633)
Q Consensus 58 -~DGtI~IWDl~t~~~~v~-~l--~~H~~~VtsLafSPdg~~LaSgS~DG-------tVrIWDlrtgk~v~~i------- 119 (633)
.+-.+..-|..+++...+ .+ ..|...|..+++.++|..++..-..+ .|-+++... ....+
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~ 212 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQW 212 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHH
Confidence 112345555566653222 23 34677899999999988776665544 344444433 22222
Q ss_pred -eCCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 006743 120 -TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179 (633)
Q Consensus 120 -~h~~~ItsLafSPdG~~LatGs-~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg 179 (633)
...+.|-+|++++++..+++.+ .-+.+.+||..++. .+.. ..-.-++.++-.+++
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~-~~~~----~~l~D~cGva~~~~~ 269 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR-LLGS----VPLPDACGVAPTDDG 269 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC-Eeec----cccCceeeeeecCCc
Confidence 2467899999999998776554 56889999999873 2221 122345666655543
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.74 E-value=0.00079 Score=75.56 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=87.3
Q ss_pred EEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEe----CCC----eEEEEeCCCCcee----eEeeCCCCeEEE
Q 006743 62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVG----LDK----KLYTYDPGSRRPS----SCITYEAPFSSL 128 (633)
Q Consensus 62 I~IWDl~t~~~~v~~l~~H~~~VtsLafSP-dg~~LaSgS----~DG----tVrIWDlrtgk~v----~~i~h~~~ItsL 128 (633)
+.+|.+...+..+.....-.....++.|+- +++.+.+.. .+| .-++|++..++.. ..+..+..+.|+
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~c 265 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICC 265 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEE
Confidence 444444443322222222334457778887 666676653 344 3456777654432 234688999999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCC
Q 006743 129 AFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (633)
Q Consensus 129 afSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDl 208 (633)
+++|+...++.|+.||.|.+||...+. .... .+.-..+.++|+|+|-+ ++.++..|.+.+||+
T Consensus 266 a~sp~E~kLvlGC~DgSiiLyD~~~~~---t~~~--ka~~~P~~iaWHp~gai------------~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 266 ARSPSEDKLVLGCEDGSIILYDTTRGV---TLLA--KAEFIPTLIAWHPDGAI------------FVVGSEQGELQCFDM 328 (545)
T ss_pred ecCcccceEEEEecCCeEEEEEcCCCe---eeee--eecccceEEEEcCCCcE------------EEEEcCCceEEEEEe
Confidence 999999999999999999999998752 2222 23456788999995544 444566899999998
Q ss_pred CC
Q 006743 209 LP 210 (633)
Q Consensus 209 r~ 210 (633)
-.
T Consensus 329 AL 330 (545)
T PF11768_consen 329 AL 330 (545)
T ss_pred ec
Confidence 64
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.74 E-value=0.0022 Score=63.89 Aligned_cols=137 Identities=20% Similarity=0.122 Sum_probs=89.5
Q ss_pred CCCcEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC
Q 006743 14 LSGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD 92 (633)
Q Consensus 14 ~DG~I~IWDl~tgk~v~~~~~~~-~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPd 92 (633)
.+|.|..||..+|+.+....... .....+..+ +++. .+++++.++.|+.||..+++.. +-......+.... ..+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~--W~~~~~~~~~~~~-~~~ 75 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVL--WRFDLPGPISGAP-VVD 75 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEE--EEEECSSCGGSGE-EEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEE--EEeecccccccee-eec
Confidence 37899999999999988876421 122221122 2344 5777789999999999888732 2222223222211 224
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeEe-eCC----CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743 93 DKIIASVGLDKKLYTYDPGSRRPSSCI-TYE----APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 93 g~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~----~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~ 155 (633)
+..++++..|+.|+.+|.++++.+... ... .....+....++..++++..++.|+.+|+++++
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence 667777778889999999999988774 211 122233333348889999999999999999984
No 311
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.72 E-value=0.0032 Score=68.03 Aligned_cols=145 Identities=19% Similarity=0.151 Sum_probs=90.6
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V 84 (633)
++..+++++.+|.|+.+|..+|+.+...... ......... .+. .++.+..+|.|+.||..+++.. +........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v--~~~-~v~v~~~~g~l~a~d~~tG~~~--W~~~~~~~~ 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV--ANG-LVVVRTNDGRLTALDAATGERL--WTYSRVTPA 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE--ECC-EEEEECCCCeEEEEEcCCCcee--eEEccCCCc
Confidence 4677888999999999999999988766532 111111112 233 5677788999999999887732 211111111
Q ss_pred EEEE--EcC--CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCC--------eEEEEEec--CCCEEEEEEcCCeEEEEE
Q 006743 85 AGIS--FSS--DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP--------FSSLAFID--DDWILTAGTSNGRVVFYD 150 (633)
Q Consensus 85 tsLa--fSP--dg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~--------ItsLafSP--dG~~LatGs~DGsV~IWD 150 (633)
..+. -+| .+..++.+..++.+..+|+++++.+........ ...+.-.| .+..+++++.+|.++.||
T Consensus 178 ~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 178 LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 1110 011 235778888899999999999987644321100 00011111 356788888999999999
Q ss_pred CCCCC
Q 006743 151 IRGKP 155 (633)
Q Consensus 151 lrs~~ 155 (633)
.++++
T Consensus 258 ~~tG~ 262 (377)
T TIGR03300 258 LRSGR 262 (377)
T ss_pred CCCCc
Confidence 98874
No 312
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.70 E-value=0.0046 Score=70.96 Aligned_cols=148 Identities=12% Similarity=0.036 Sum_probs=98.2
Q ss_pred cCCCCEEEEE-ECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe------------------------
Q 006743 3 NCKDEHLASI-SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG------------------------ 57 (633)
Q Consensus 3 SpdG~~LaSg-s~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs------------------------ 57 (633)
.+||+.+... -..+.+.+.|.++.+....+.. ......+++++++...++++.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 4566655333 2346677888877776666553 223345677777774333331
Q ss_pred ---------------CCCeEEEEECCC----CCceeEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCce--
Q 006743 58 ---------------DDGTLHLWDTTG----RSPKVSWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRP-- 115 (633)
Q Consensus 58 ---------------~DGtI~IWDl~t----~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~-DGtVrIWDlrtgk~-- 115 (633)
.++.|.+.|..+ ... +.....-......++++|||+++++++. +.+|.|+|+.+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 124577777766 222 2223334456789999999999877764 78999999987542
Q ss_pred ----------eeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 116 ----------SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 116 ----------v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
+............+|+++|+...+-.-|..|..||+..
T Consensus 358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33334455566788999998888888899999999875
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.70 E-value=0.0015 Score=78.28 Aligned_cols=179 Identities=18% Similarity=0.238 Sum_probs=117.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC----CCCce----
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT----GRSPK---- 73 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~----t~~~~---- 73 (633)
|..+++.++.+..+|.|.+-|.++.... +-+.....|.+++|+||++ +++....++++.+-+-. ..+..
T Consensus 76 fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~~f~~i~E~~L~~d~ 152 (1265)
T KOG1920|consen 76 FLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEE-LLALITGRQTLLFMTKDFEPIAEKPLDADD 152 (1265)
T ss_pred EecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEeccccchhcccccccc
Confidence 3456677888899999999988765432 2333456788999999998 77877877887766431 00000
Q ss_pred --------------eEEeccC---------------------CCCeEEEEEcCCCCEEEE-----EeCCCeEEEEeCCCC
Q 006743 74 --------------VSWLKQH---------------------SAPTAGISFSSDDKIIAS-----VGLDKKLYTYDPGSR 113 (633)
Q Consensus 74 --------------v~~l~~H---------------------~~~VtsLafSPdg~~LaS-----gS~DGtVrIWDlrtg 113 (633)
...+.+. ...=+.|.|--||.+|++ ....+.|++||-+ +
T Consensus 153 ~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g 231 (1265)
T KOG1920|consen 153 ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G 231 (1265)
T ss_pred ccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c
Confidence 0111110 111235889999999988 3333799999987 4
Q ss_pred ceeeEe-eCCCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006743 114 RPSSCI-TYEAPFSSLAFIDDDWILTAGT---SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID 184 (633)
Q Consensus 114 k~v~~i-~h~~~ItsLafSPdG~~LatGs---~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las 184 (633)
..-..- ...+--.+++|-|.|..+++-. .|+.|.+|.-+....-...+........|..++|+.++..|+.
T Consensus 232 ~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 232 ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence 432222 3445566899999999998754 4667999987764332233333334455999999998887765
No 314
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00084 Score=74.61 Aligned_cols=174 Identities=17% Similarity=0.209 Sum_probs=114.6
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe-----------CCCeEEEEECCCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-----------DDGTLHLWDTTGR 70 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs-----------~DGtI~IWDl~t~ 70 (633)
|||.|.||++--..| |.+|--.+-..++.|. |.. |.-+.|+|+.. +|++=+ ....++|||+.++
T Consensus 218 wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~-Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 218 WSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPG-VQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred ecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCC-ceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEcccc
Confidence 899999999987655 8899877767777775 444 56689999987 788743 2357999999988
Q ss_pred CceeEEecc--CCCCe-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEc----
Q 006743 71 SPKVSWLKQ--HSAPT-AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS---- 142 (633)
Q Consensus 71 ~~~v~~l~~--H~~~V-tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~---- 142 (633)
..+ +.+.. ....+ .-+.|+.|++++|.-..| .|.||+..+-.++-... .-..|....|+|.+..||-=..
T Consensus 293 ~lk-rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 293 LLK-RSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred chh-cceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 743 22222 12222 346899999999988875 58999876533222111 3467888999999888774332
Q ss_pred -CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 143 -NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 143 -DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
-..+.+..+.++ +.++..+ -|.-.=..+-|..+|.+|+.-
T Consensus 371 ~parvtL~evPs~-~~iRt~n--lfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 371 IPARVTLMEVPSK-REIRTKN--LFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred CcceEEEEecCcc-ceeeecc--ceeeeccEEEeccCCcEEEEE
Confidence 134666666554 2223222 122233457788888887654
No 315
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.0012 Score=75.68 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=129.5
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEcc---CCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006743 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR---NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (633)
Q Consensus 8 ~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSp---dg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~V 84 (633)
.||++...|.|.+||...+..+..+. ++.+.+..++|-+ +.+++|++-....+|.+|+..+++..-+ ........
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-~~ys~~iL 158 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-YDYSHEIL 158 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec-cccCCcce
Confidence 67788889999999999888888887 4667778888865 3446788888889999999998884322 22233567
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEeCCC-------CceeeEe-eCCC-------------------------CeEEEEE
Q 006743 85 AGISFSS-DDKIIASVGLDKKLYTYDPGS-------RRPSSCI-TYEA-------------------------PFSSLAF 130 (633)
Q Consensus 85 tsLafSP-dg~~LaSgS~DGtVrIWDlrt-------gk~v~~i-~h~~-------------------------~ItsLaf 130 (633)
.|+.+.| |.++|..-+..|.|-+.+.-. ++..++. .|.. .+..++|
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 7899999 888888888888887776521 2222221 1111 0224577
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 131 SPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
+|.-+.++.......+.|+|++-. +++.+.. -..+.+.-+.|-|+. ....|++...||.+.+|--+
T Consensus 239 ~p~~rn~lfi~~prellv~dle~~-~~l~vvp--ier~~akfv~vlP~~----------~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 239 SPHWRNILFITFPRELLVFDLEYE-CCLAVVP--IERGGAKFVDVLPDP----------RRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ChhhhceEEEEeccceEEEcchhh-ceeEEEE--eccCCcceeEeccCC----------CcceEEEEecCCeEEEEEee
Confidence 887777777777888999999865 4444444 244566667777753 34456666778888888443
No 316
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.62 E-value=0.003 Score=67.05 Aligned_cols=177 Identities=11% Similarity=0.144 Sum_probs=109.4
Q ss_pred CcEEEEECCCCceeEEEeCCCCCcEEEEEEcc---C---CCeEEEEEeC----------CCeEEEEECCCC-----Ccee
Q 006743 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSR---N---SRHLLVTAGD----------DGTLHLWDTTGR-----SPKV 74 (633)
Q Consensus 16 G~I~IWDl~tgk~v~~~~~~~~~~VssLafSp---d---g~~lLaSGs~----------DGtI~IWDl~t~-----~~~v 74 (633)
..|++.|..+.+.+..+.-...+.+.+++... + ...+|+.|.. .|.|.+|++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46889998888887776654555566554332 2 1457777643 289999999874 2222
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeEeeC--CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCITY--EAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (633)
Q Consensus 75 ~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-~v~~i~h--~~~ItsLafSPdG~~LatGs~DGsV~IWDl 151 (633)
..-....++|++++-- +++ |+++. .+.|++|++...+ ......+ ...+.++... +++|++|.....|.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2234557889999876 444 44444 4789999998877 4444333 3355555554 679999998888888755
Q ss_pred CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 152 rs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
+.....+..+.......++++++|-++ + ..++.+..++.+.++...
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d-----------~-~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVD-----------E-DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-S-----------S-SEEEEEETTSEEEEEEE-
T ss_pred EccCCEEEEEEecCCCccEEEEEEecC-----------C-cEEEEEcCCCeEEEEEEC
Confidence 543333344443344566777777653 2 256666778888887664
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.61 E-value=0.00039 Score=80.87 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=107.7
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC---------CCeEEEEECCCCCcee
Q 006743 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---------DGTLHLWDTTGRSPKV 74 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~---------DGtI~IWDl~t~~~~v 74 (633)
.+++++.+|...|+|.+-|.++.+.+.++.. |.+.|. +|.-.|+ +|++|+. |..|+|||++.....
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a-Hs~siS--DfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral- 259 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDA-HSGSIS--DFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRAL- 259 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeec-ccccee--eeeccCC-eEEEeecccccccccccchhhhhhhhhhhcc-
Confidence 4678899999999999999999999999987 566666 4555676 7888764 456899999876532
Q ss_pred EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeC---CCCce--eeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 006743 75 SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDP---GSRRP--SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (633)
Q Consensus 75 ~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVrIWDl---rtgk~--v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~I 148 (633)
.-+.-+.+ -.-+.|.| -...+++++..|.+.+.|. .+... .........+..+++++++..++.|..+|.|.+
T Consensus 260 ~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 260 SPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred CCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 12222322 25567888 6678899999999999994 33211 122245566999999999999999999999999
Q ss_pred EECC
Q 006743 149 YDIR 152 (633)
Q Consensus 149 WDlr 152 (633)
|.-+
T Consensus 339 wa~~ 342 (1118)
T KOG1275|consen 339 WADR 342 (1118)
T ss_pred ecCC
Confidence 9844
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0022 Score=69.99 Aligned_cols=200 Identities=9% Similarity=0.067 Sum_probs=131.2
Q ss_pred cCCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCC-ceeEEe
Q 006743 3 NCKDEHLASISL-SGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRS-PKVSWL 77 (633)
Q Consensus 3 SpdG~~LaSgs~-DG~I~IWDl~tgk~v~~~~~~~-~~~VssLafSpdg~--~lLaSGs~DGtI~IWDl~t~~-~~v~~l 77 (633)
+.+|..+++++. |..++++|+++-..+.-++... ...+. +..++... .+-+....++.|.|+|-.... .....-
T Consensus 62 S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 62 SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence 557778888777 9999999998766554333211 11111 12222211 233444578999999986554 334555
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC------CceeeE----------eeCCCCeEEEEEecCCCEEEEEE
Q 006743 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS------RRPSSC----------ITYEAPFSSLAFIDDDWILTAGT 141 (633)
Q Consensus 78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt------gk~v~~----------i~h~~~ItsLafSPdG~~LatGs 141 (633)
.-|..+|.++.+++.+..+++....|.|..|.... .+.... ...+....++.|+|++..+.+-+
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 67999999999999999999999999999998762 111111 12456788999999999999999
Q ss_pred cCCeEEEEECCCCCCceEEEeec------------------------------CC-CCCeeEEEEccCCCeEEEeccCCC
Q 006743 142 SNGRVVFYDIRGKPQPLTVLRAC------------------------------SS-SEAVSSLCWQRAKPVFIDETTCKA 190 (633)
Q Consensus 142 ~DGsV~IWDlrs~~k~v~~l~~~------------------------------~H-~~~VtsLafsPdg~~Las~s~~sd 190 (633)
.|..|++++.++++ .++.+... .| ....+.++|+..+++|+.+.. -
T Consensus 221 ~DrkVR~F~~KtGk-lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~--~ 297 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGK-LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI--L 297 (558)
T ss_pred cccEEEEEEeccch-hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc--e
Confidence 99999999998763 11111000 01 223467888888888876632 3
Q ss_pred CeEEEEeeCCCeEEcc
Q 006743 191 ETALLGGAVGDSILMP 206 (633)
Q Consensus 191 ~~lLlSgs~Dg~IkIW 206 (633)
+.-++.-.....++++
T Consensus 298 gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 298 GIKVINLDTNTVVRIL 313 (558)
T ss_pred eEEEEEeecCeEEEEe
Confidence 4444444444555554
No 319
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.55 E-value=0.00065 Score=71.01 Aligned_cols=125 Identities=12% Similarity=0.189 Sum_probs=90.1
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCC-----CCeEEEEEcC-CCCEEEEEeCCCeEE
Q 006743 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHS-----APTAGISFSS-DDKIIASVGLDKKLY 106 (633)
Q Consensus 35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~--~~v~~l~~H~-----~~VtsLafSP-dg~~LaSgS~DGtVr 106 (633)
.|...+..+.|+.+.+ .+ ..++|=.|.+|+++-.. ..+.-++.|. .-|++..|+| ..++|...+..|.|+
T Consensus 170 aH~yhiNSiS~NsD~e-t~-lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 170 AHPYHINSISFNSDKE-TL-LSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cceeEeeeeeecCchh-ee-eeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 4556677788888876 34 44677899999985433 2233344443 4588899999 778888899999999
Q ss_pred EEeCCCCcee----eEe-------------eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 006743 107 TYDPGSRRPS----SCI-------------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR 162 (633)
Q Consensus 107 IWDlrtgk~v----~~i-------------~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~ 162 (633)
+-|+|..... ..+ .....|..+.|+++|++|++-.. -+|+|||.+..+.|++++.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence 9999843211 111 12345888999999999987655 5799999999888888775
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.52 E-value=0.0053 Score=70.48 Aligned_cols=193 Identities=11% Similarity=-0.043 Sum_probs=114.1
Q ss_pred CCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCCCCcEEEEEE-------------------ccCCCeEEEEEeCCCeEE
Q 006743 4 CKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDY-------------------SRNSRHLLVTAGDDGTLH 63 (633)
Q Consensus 4 pdG~~LaSgs~-DG~I~IWDl~tgk~v~~~~~~~~~~VssLaf-------------------Spdg~~lLaSGs~DGtI~ 63 (633)
.||++|..-.+ +..|...++...++-+.+..+....+..++| .++|+.+..+.-..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 46888887764 5667777776655444333322222333333 334432222333345566
Q ss_pred EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe----------------------------------------CCC
Q 006743 64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG----------------------------------------LDK 103 (633)
Q Consensus 64 IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS----------------------------------------~DG 103 (633)
+.|.++.+.. ..+.. ......++++++++++++.+ .++
T Consensus 219 vID~etmeV~-~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn 296 (635)
T PRK02888 219 AVDAETMEVA-WQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGS 296 (635)
T ss_pred EEECccceEE-EEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCC
Confidence 7777665522 22221 12335567778787777665 234
Q ss_pred eEEEEeCCC-----CceeeEeeCCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCCCce-------E-EEeecCCCCC
Q 006743 104 KLYTYDPGS-----RRPSSCITYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQPL-------T-VLRACSSSEA 169 (633)
Q Consensus 104 tVrIWDlrt-----gk~v~~i~h~~~ItsLafSPdG~~LatGs~-DGsV~IWDlrs~~k~v-------~-~l~~~~H~~~ 169 (633)
.|.++|.++ .+.+..+........+.++|||+++++++. +.+|.|+|+.+.+..+ . +.....-...
T Consensus 297 ~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG 376 (635)
T PRK02888 297 KVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG 376 (635)
T ss_pred EEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC
Confidence 688888887 456677778888899999999999887665 8999999998854211 0 0111111223
Q ss_pred eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 170 VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
-...+|+++ +..+.+--.|..|..|++..
T Consensus 377 PLHTaFDg~------------G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 377 PLHTAFDGR------------GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEECCC------------CCEEEeEeecceeEEEehHH
Confidence 334556554 34455556688999998754
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0025 Score=68.70 Aligned_cols=135 Identities=12% Similarity=0.070 Sum_probs=90.9
Q ss_pred CccCCCC-EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006743 1 MYNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (633)
Q Consensus 1 AFSpdG~-~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~ 79 (633)
+|+|..+ ++..++.+.+|+|.|+++...+..+..+ ..+..++|.-++.++|++|...|.|.|||++..+..+..+.+
T Consensus 200 afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 200 AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA 277 (463)
T ss_pred ccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh
Confidence 5788777 7888999999999999998888877753 556778999999999999999999999999876643322222
Q ss_pred --CCCCeEEEEEc------CCCCEEEEEeCCCeEEEEeCC----CCceeeEeeCCCCeEEEEEecCCCEEEE
Q 006743 80 --HSAPTAGISFS------SDDKIIASVGLDKKLYTYDPG----SRRPSSCITYEAPFSSLAFIDDDWILTA 139 (633)
Q Consensus 80 --H~~~VtsLafS------Pdg~~LaSgS~DGtVrIWDlr----tgk~v~~i~h~~~ItsLafSPdG~~Lat 139 (633)
...+|..++.- +.+.+++....+ +..|.+. ...++..+...+.+.++++++-.+.++.
T Consensus 278 ~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ 347 (463)
T KOG1645|consen 278 NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLL 347 (463)
T ss_pred hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEE
Confidence 22344444332 234444444433 4556553 2233344456677878888775444443
No 322
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.031 Score=61.28 Aligned_cols=178 Identities=11% Similarity=0.050 Sum_probs=120.8
Q ss_pred ccCCCCEEEE-EECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEec
Q 006743 2 YNCKDEHLAS-ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 2 FSpdG~~LaS-gs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs--~DGtI~IWDl~t~~~~v~~l~ 78 (633)
.++.+..++. ...++.|.+.|..+.+....+.... ....+++.+++..+.++-. .++++.+.|..+...... ..
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~ 157 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IP 157 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Ee
Confidence 4566764444 4456899999988777777665433 4456899999985555555 378899999888775333 44
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceee-----EeeCCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 006743 79 QHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSS-----CITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY 149 (633)
Q Consensus 79 ~H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrtgk~v~-----~i~h~~~ItsLafSPdG~~LatGs~D---GsV~IW 149 (633)
....+ ..+++.|++..++.+. .++.|.+.|........ ..........+.++|+|.++.+.... +.|...
T Consensus 158 vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i 236 (381)
T COG3391 158 VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI 236 (381)
T ss_pred cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence 44344 8999999999766665 78899999987765553 23344556778999999977665544 589999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
|..+... .......+-. ....+.++|+|.++...
T Consensus 237 d~~~~~v-~~~~~~~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 237 DTATGNV-TATDLPVGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred eCCCceE-EEeccccccC-CCCceeECCCCCEEEEE
Confidence 9888631 1110111112 45678889988877665
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.00095 Score=76.07 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=93.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-----
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS----- 75 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~----- 75 (633)
+...+++++.|+.-|.|++|+-..++.. .++. .....+..+..+++.. ++|+|+..|.|.|+-+....+...
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcceeecc
Confidence 4567899999999999999996555433 3332 1233444456677665 889999999999998865443211
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeeEeeCCCCeEEEEEecCCCEEEEEE
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-----PSSCITYEAPFSSLAFIDDDWILTAGT 141 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-----~v~~i~h~~~ItsLafSPdG~~LatGs 141 (633)
.-+.|...|+|++|++++..+++|...|+|.+-.+.... ...++...+.|..+.+. ..+|++++
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVSt 187 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVST 187 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhh
Confidence 123478899999999999999999999999988877621 11222455667666654 33444443
No 324
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.44 E-value=0.011 Score=61.31 Aligned_cols=181 Identities=12% Similarity=0.143 Sum_probs=102.0
Q ss_pred CccCCCC-EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--e---
Q 006743 1 MYNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--V--- 74 (633)
Q Consensus 1 AFSpdG~-~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~--v--- 74 (633)
+|+|+.+ ++++....+.|..++. +|+.+..+.-....-.-.|++..++. ++++--.++.+.++++...... .
T Consensus 28 Ty~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~~~~~~~~~~~~~~~ 105 (248)
T PF06977_consen 28 TYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRLYIFTIDDDTTSLDRADV 105 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEEEEEEE----TT--EEEE
T ss_pred EEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcEEEEEEeccccccchhhc
Confidence 4888766 5556667788888886 68888877643344567788886664 5555556899999998332211 1
Q ss_pred EEe-----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeeEe---------eCCCCeEEEEEecC-CCE
Q 006743 75 SWL-----KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---RRPSSCI---------TYEAPFSSLAFIDD-DWI 136 (633)
Q Consensus 75 ~~l-----~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt---gk~v~~i---------~h~~~ItsLafSPd-G~~ 136 (633)
..+ ..++..+..++|++.++.|+.+-+..-.++|.++. ....... ..-..+.+++++|. +++
T Consensus 106 ~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~l 185 (248)
T PF06977_consen 106 QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHL 185 (248)
T ss_dssp EEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEE
T ss_pred eEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeE
Confidence 111 13556799999999877777777776666666543 2222111 13345889999995 567
Q ss_pred EEEEEcCCeEEEEECCCCCCceEEEeecC--C-----CCCeeEEEEccCCCeEEEe
Q 006743 137 LTAGTSNGRVVFYDIRGKPQPLTVLRACS--S-----SEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 137 LatGs~DGsV~IWDlrs~~k~v~~l~~~~--H-----~~~VtsLafsPdg~~Las~ 185 (633)
++.......|.++|.... ++..+.... | -...-.|+|+++|...++.
T Consensus 186 liLS~es~~l~~~d~~G~--~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 186 LILSDESRLLLELDRQGR--VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EEEECCCCeEEEECCCCC--EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 778888899999995543 344443222 1 1246789999987665554
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0018 Score=74.92 Aligned_cols=106 Identities=13% Similarity=0.209 Sum_probs=83.5
Q ss_pred CccCCCCEEEEEE----CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 006743 1 MYNCKDEHLASIS----LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW 76 (633)
Q Consensus 1 AFSpdG~~LaSgs----~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~ 76 (633)
.|+|..-++++++ ..|.|.||- ++|++-..+.- .-.+.++||+|..- +|+.|-.-|.+.+|...+.+. ...
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~-htv 96 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTET-HTV 96 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccChHHH-HHhhccccceeEEEecCCcee-eee
Confidence 4899999998875 357888885 56665444331 12234589999865 788888899999999987763 455
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 006743 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG 111 (633)
Q Consensus 77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlr 111 (633)
...|..+|..+.|+++|..++++..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 67899999999999999999999999999999764
No 326
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.40 E-value=0.005 Score=72.80 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=93.4
Q ss_pred ECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCC------CeEEEEEeCCCeEEEEECCCCCceeEEe----ccCCC
Q 006743 13 SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS------RHLLVTAGDDGTLHLWDTTGRSPKVSWL----KQHSA 82 (633)
Q Consensus 13 s~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg------~~lLaSGs~DGtI~IWDl~t~~~~v~~l----~~H~~ 82 (633)
.....|+-.|++.|+.+.+...+....|. .+.|+. ..--+.|-.+..++.||.+-...++..- .....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 34578999999999999999875554444 444431 1135677888999999997543222111 12334
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743 83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (633)
Q Consensus 83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl 151 (633)
...|++-..+| +||+|+.+|.||+||--..+....+ +.+.+|..|+.+.||++|++.+. ..+.+++.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 56777766544 7999999999999994332333333 56899999999999999887765 45666664
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.40 E-value=0.002 Score=72.07 Aligned_cols=158 Identities=13% Similarity=0.124 Sum_probs=89.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
++|+|+.+++ +.||...||.....+....- .. ...+|...+ .+|+-...+.|.|+.--.... ...+.. .
T Consensus 40 ~npngr~v~V-~g~geY~iyt~~~~r~k~~G-----~g-~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~-~k~i~~-~ 108 (443)
T PF04053_consen 40 HNPNGRFVLV-CGDGEYEIYTALAWRNKAFG-----SG-LSFVWSSRN--RYAVLESSSTIKIYKNFKNEV-VKSIKL-P 108 (443)
T ss_dssp E-TTSSEEEE-EETTEEEEEETTTTEEEEEE-----E--SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T-T------S
T ss_pred ECCCCCEEEE-EcCCEEEEEEccCCcccccC-----ce-eEEEEecCc--cEEEEECCCeEEEEEcCcccc-ceEEcC-C
Confidence 7899999988 56888889885444333221 22 236888855 477777789999974322221 111111 1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-------
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK------- 154 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~------- 154 (633)
..+..|-. |.+|+..+.+ .|.+||..+++.+..+.... |..+.|+++|.+++..+.+ .++|++.+..
T Consensus 109 ~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~ 182 (443)
T PF04053_consen 109 FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPE 182 (443)
T ss_dssp S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTT
T ss_pred cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccc
Confidence 12344432 7777776655 89999999999999887654 8999999999999999866 5777665432
Q ss_pred ---CCceEEEeecCCCCCeeEEEEccC
Q 006743 155 ---PQPLTVLRACSSSEAVSSLCWQRA 178 (633)
Q Consensus 155 ---~k~v~~l~~~~H~~~VtsLafsPd 178 (633)
+..+..+. .-...|.+.+|.-+
T Consensus 183 ~g~e~~f~~~~--E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 183 EGVEDAFELIH--EISERIKSGCWVED 207 (443)
T ss_dssp TB-GGGEEEEE--EE-S--SEEEEETT
T ss_pred cCchhceEEEE--EecceeEEEEEEcC
Confidence 11233333 22578999999876
No 328
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.38 E-value=0.0033 Score=72.36 Aligned_cols=147 Identities=13% Similarity=0.136 Sum_probs=111.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCC-----------CeEEEEEeCCCeEEEEECCCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS-----------RHLLVTAGDDGTLHLWDTTGR 70 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg-----------~~lLaSGs~DGtI~IWDl~t~ 70 (633)
|++.| +||.|+ ...|.+-|..+-+.+..+.. |...|..|.|.|.. .-+|+++...|.|.+||....
T Consensus 23 w~~~G-LiAygs-hslV~VVDs~s~q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~ 99 (1062)
T KOG1912|consen 23 WSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA 99 (1062)
T ss_pred cCccc-eEEEec-CceEEEEehhhhhhhhcccc-CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence 45544 566665 45788999999999998875 66778889998742 236778888999999999877
Q ss_pred CceeEEeccCCCCeEEEEEcC---CC-CEEEEEeCCCeEEEEeCCCCceeeEeeCCC-CeEEEEEec-CCCEEEEEEcCC
Q 006743 71 SPKVSWLKQHSAPTAGISFSS---DD-KIIASVGLDKKLYTYDPGSRRPSSCITYEA-PFSSLAFID-DDWILTAGTSNG 144 (633)
Q Consensus 71 ~~~v~~l~~H~~~VtsLafSP---dg-~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~-~ItsLafSP-dG~~LatGs~DG 144 (633)
.. +.++..|..+|.+++|-+ +. ..|+......+|.+|+..+|+.+....... ...|+.++| |.+.+..-+..|
T Consensus 100 s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g 178 (1062)
T KOG1912|consen 100 SV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG 178 (1062)
T ss_pred hh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence 63 566788899999999976 33 467777778899999999999887765443 455689998 667777777778
Q ss_pred eEEEEECC
Q 006743 145 RVVFYDIR 152 (633)
Q Consensus 145 sV~IWDlr 152 (633)
.|.+-+.-
T Consensus 179 ~vl~~~~l 186 (1062)
T KOG1912|consen 179 FVLSCKDL 186 (1062)
T ss_pred eEEEEecc
Confidence 87777654
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00046 Score=74.21 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=87.3
Q ss_pred EEEEECCCCCceeEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCC-CEEEE
Q 006743 62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD-WILTA 139 (633)
Q Consensus 62 I~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~-~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG-~~Lat 139 (633)
|++.+..+.+. ...+..|...|.+++|+|..+ ++..++.+.+|+|.|+++...+..+.....+++++|+-|. ++|.+
T Consensus 175 v~~l~~~~fks-sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKS-SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcch-hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEE
Confidence 44444444432 345677888999999999544 8899999999999999998888877666999999999865 67778
Q ss_pred EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743 140 GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (633)
Q Consensus 140 Gs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP 177 (633)
|-.+|.|+|||++....++..+.......+|..++.-+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~ 291 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQ 291 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccC
Confidence 88999999999998776655555333445666665443
No 330
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0012 Score=72.00 Aligned_cols=190 Identities=14% Similarity=0.074 Sum_probs=123.1
Q ss_pred CCCEEEEEECCCcEEEEECCCCce---eEEEeCCCCCcEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCCce-eEEecc
Q 006743 5 KDEHLASISLSGDLILHNLASGAK---AAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDTTGRSPK-VSWLKQ 79 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~---v~~~~~~~~~~VssLafSpdg~~lLaSGs~-DGtI~IWDl~t~~~~-v~~l~~ 79 (633)
..+++.+++.||.++.|.-..-.. +..+.. |...+..++.+-++. ++++.+. |+.++++|+++-... ...+..
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFra-HL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~ 96 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRA-HLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVENFDMINMIKLVD 96 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHH-HHHHHHhhhccccce-eEeeccCcccceeEEEeeccchhhhccccc
Confidence 356888999999999998532122 222332 556677788888886 7888787 999999999765522 111222
Q ss_pred CCCCeEEEEEcC-CCC-EEE-EEeCCCeEEEEeCCCCcee-eEe--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 80 HSAPTAGISFSS-DDK-IIA-SVGLDKKLYTYDPGSRRPS-SCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 80 H~~~VtsLafSP-dg~-~La-SgS~DGtVrIWDlrtgk~v-~~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
-.+.+.++ .++ +.. .|+ +.-.++.+.++|-+...+. ..+ -|..+|.++.+++.+..+++....|.|.-|....
T Consensus 97 lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 97 LPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred CCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence 22222211 222 111 232 3346789999998865433 223 3889999999999999999999999999999873
Q ss_pred -CCCceE-----------EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 154 -KPQPLT-----------VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 154 -~~k~v~-----------~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
.+.|-. .+.........+++.|+|++..+..- +.|..|++++++
T Consensus 176 ~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl------------~~DrkVR~F~~K 231 (558)
T KOG0882|consen 176 PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL------------NPDRKVRGFVFK 231 (558)
T ss_pred cccCccccccccccccchhhcccccccCccceEEccccCccccc------------CcccEEEEEEec
Confidence 111111 11112345678899999987776654 346666666655
No 331
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.15 E-value=0.0079 Score=66.98 Aligned_cols=139 Identities=16% Similarity=0.179 Sum_probs=92.5
Q ss_pred CccCCCCEEEEEE-CCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006743 1 MYNCKDEHLASIS-LSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (633)
Q Consensus 1 AFSpdG~~LaSgs-~DG--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt--I~IWDl~t~~~~v~ 75 (633)
+|+|||++|+.+. .|| .|+++|+..+. ...+.... ..-..=.|+|+|+.++++.+..|. |.++|.++... .
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~ 319 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGF-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--T 319 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCC-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--e
Confidence 5999999887654 455 46777876655 33343212 222245799999988888777776 55666666663 3
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLD-KK--LYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN 143 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~D-Gt--VrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D 143 (633)
.+......-..-.|+|||++|+..+.. |. |.+.|+.++...+.+..........|.+++..+...+..
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 333333333377899999999888753 33 777788776656666666777778888998887755443
No 332
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.09 E-value=0.13 Score=57.10 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=43.3
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006743 123 APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID 184 (633)
Q Consensus 123 ~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las 184 (633)
+++..|+.+|+|++||.-..+|.+.|++..-. +.+..+.. .-......+.|+-+.-.++.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~-~~~~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDT-DSKSPPKQMAWCGNDAVVLS 276 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeec-CcCCCCcEEEEECCCcEEEE
Confidence 57999999999999999999999999886554 23333332 23456788999876544433
No 333
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.06 E-value=0.039 Score=60.30 Aligned_cols=141 Identities=12% Similarity=0.102 Sum_probs=88.5
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCC------cEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQ------VLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~------~VssLafSp--dg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~ 78 (633)
..++.+..+|.|..+|..+|+.+......... ....+.-.| .+. .++.++.+|.++.+|..+++. .+-.
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~~~~g~l~ald~~tG~~--~W~~ 282 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYALAYNGNLVALDLRSGQI--VWKR 282 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEEEcCCeEEEEECCCCCE--EEee
Confidence 35667788999999999998876554321100 000011111 133 566778899999999988873 2222
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h--~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~ 155 (633)
.. .....+.. .+..|+.++.++.|..+|..+++.+-.... .....+..+ .+.+|++++.||.|+++|..+++
T Consensus 283 ~~-~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 283 EY-GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred cC-CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 21 11122222 467888889999999999999887543321 111222222 25678899999999999999874
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.04 E-value=0.0045 Score=70.78 Aligned_cols=117 Identities=14% Similarity=0.196 Sum_probs=88.8
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 006743 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (633)
Q Consensus 36 ~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~ 115 (633)
+...|.--++...+. +++.|+.-|.|++|+-.++........+..+.+..+..+++..++|.|+..|.|.++-+..+.+
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 333344334555565 8999999999999999877743333333456667778888999999999999999998876433
Q ss_pred e--eEe-----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 116 S--SCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 116 v--~~i-----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
- ..+ .|+..|+|++|++++..|++|...|+|.+-.+..
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2 111 2678899999999999999999999999987776
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.01 E-value=0.00018 Score=80.99 Aligned_cols=159 Identities=14% Similarity=0.182 Sum_probs=110.9
Q ss_pred CCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCce-eEEeccCCCCeEEEEEcC-CCCEEEEEe----CCCeEEEEe
Q 006743 37 EQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHSAPTAGISFSS-DDKIIASVG----LDKKLYTYD 109 (633)
Q Consensus 37 ~~~VssLafSpdg~-~lLaSGs~DGtI~IWDl~t~~~~-v~~l~~H~~~VtsLafSP-dg~~LaSgS----~DGtVrIWD 109 (633)
...+.|++++-+.+ -+++.|..+|.|.+-.++..... .....+|....++++|++ |.++||.|- .|-.+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34567788765543 57888999999999988654432 345678889999999999 788888774 345799999
Q ss_pred CCCC--ceee--Ee--eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeE
Q 006743 110 PGSR--RPSS--CI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVF 182 (633)
Q Consensus 110 lrtg--k~v~--~i--~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP-dg~~L 182 (633)
+.++ .+.. .+ .......++||..+.+.|++|...+.|+++|+|........ ..+..+..+..+| .+.|+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s----vnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS----VNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh----hhhhhcccceecCCCCCce
Confidence 9876 2221 11 24456678999988899999999999999999953211111 2344566777777 33333
Q ss_pred EEeccCCCCeEEEEeeCCCeEEccC-CCCCC
Q 006743 183 IDETTCKAETALLGGAVGDSILMPD-PLPSV 212 (633)
Q Consensus 183 as~s~~sd~~lLlSgs~Dg~IkIWD-lr~~~ 212 (633)
+...|+.|.+|| .+...
T Consensus 212 -------------cs~~dg~iAiwD~~rnie 229 (783)
T KOG1008|consen 212 -------------CSNSDGDIAIWDTYRNIE 229 (783)
T ss_pred -------------eccccCceeeccchhhhc
Confidence 233499999999 55443
No 336
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0028 Score=71.67 Aligned_cols=92 Identities=12% Similarity=0.117 Sum_probs=76.3
Q ss_pred CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006743 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA-GISFSSDDKIIASVGLDKKLYTYDPGSRRPS 116 (633)
Q Consensus 38 ~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt-sLafSPdg~~LaSgS~DGtVrIWDlrtgk~v 116 (633)
..+.-+.|+|.-+ +||.+..+|.|.++.+.-.+ +-.+.-|+..++ +++|.|||+.|++|-.||+|++.|+.++..+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~qR--lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLNWQR--LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEeccce--eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 3456689999987 99999999999999988333 444554666777 9999999999999999999999999998877
Q ss_pred eE--eeCCCCeEEEEEec
Q 006743 117 SC--ITYEAPFSSLAFID 132 (633)
Q Consensus 117 ~~--i~h~~~ItsLafSP 132 (633)
.. +.....|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 66 45778899998873
No 337
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.93 E-value=0.28 Score=50.48 Aligned_cols=143 Identities=20% Similarity=0.234 Sum_probs=90.9
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE-------
Q 006743 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW------- 76 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~------- 76 (633)
..++.|+.|+.+| |++++.........+. +...|..+...++-+ .|++- .|+.+++|++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhccccccccccccc
Confidence 3578999999988 9999984333333332 122377788888766 34443 3599999998644322100
Q ss_pred ------eccCCCCeEEEE--EcCCCCEEEEEeCCCeEEEEeCCCC-----ceeeEeeCCCCeEEEEEecCCCEEEEEEcC
Q 006743 77 ------LKQHSAPTAGIS--FSSDDKIIASVGLDKKLYTYDPGSR-----RPSSCITYEAPFSSLAFIDDDWILTAGTSN 143 (633)
Q Consensus 77 ------l~~H~~~VtsLa--fSPdg~~LaSgS~DGtVrIWDlrtg-----k~v~~i~h~~~ItsLafSPdG~~LatGs~D 143 (633)
.......+..++ -...+...+++...+.|.+|..... +..+.+.....+.+++|. ++.|+.|..+
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC
Confidence 112223455444 1124445555555668888877542 455666788999999999 6678888765
Q ss_pred CeEEEEECCCC
Q 006743 144 GRVVFYDIRGK 154 (633)
Q Consensus 144 GsV~IWDlrs~ 154 (633)
+ ..+.|+.+.
T Consensus 158 ~-f~~idl~~~ 167 (275)
T PF00780_consen 158 G-FYLIDLNTG 167 (275)
T ss_pred c-eEEEecCCC
Confidence 5 888899865
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.93 E-value=0.012 Score=69.67 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=86.9
Q ss_pred eCCCeEEEEECCCCCceeEEeccCCCC-eEEEEEc----C-CCCEEEEEeCCCeEEEEeCCCCc--eeeE----eeCCCC
Q 006743 57 GDDGTLHLWDTTGRSPKVSWLKQHSAP-TAGISFS----S-DDKIIASVGLDKKLYTYDPGSRR--PSSC----ITYEAP 124 (633)
Q Consensus 57 s~DGtI~IWDl~t~~~~v~~l~~H~~~-VtsLafS----P-dg~~LaSgS~DGtVrIWDlrtgk--~v~~----i~h~~~ 124 (633)
.....|+-.|++.++. +..+..|... |..++-. . .....+.|-.++.|..||+|-.. ++.. +.....
T Consensus 501 ~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 4568899999999884 6667766643 6555432 1 23445677778889999999632 3321 134556
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 125 FSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 125 ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
..|++-..+| +||+|+.+|.|++||--. .+....+. +-..+|.+|+.+.||++|++.
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp--~lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALP--GLGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCC--CCCCCeeEEEecCCCcEEEEe
Confidence 7888877666 789999999999999533 23222233 667999999999999998765
No 339
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.92 E-value=0.035 Score=60.68 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=87.9
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC--CCC
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH--SAP 83 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H--~~~ 83 (633)
+..++.++.+|.+..+|..+|+.+-..... .. ..+.. .+. .++.++.+|.|+.+|..+++. .+-... ...
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~-~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~--~W~~~~~~~~~ 327 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SV-NDFAV--DGG-RIYLVDQNDRVYALDTRGGVE--LWSQSDLLHRL 327 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCC--Cc-cCcEE--ECC-EEEEEcCCCeEEEEECCCCcE--EEcccccCCCc
Confidence 556777888999999999999877554321 11 11222 233 577788899999999988763 221110 111
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeC-CCCeE-EEEEecCCCEEEEEEcCCeEEEEEC
Q 006743 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-EAPFS-SLAFIDDDWILTAGTSNGRVVFYDI 151 (633)
Q Consensus 84 VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h-~~~It-sLafSPdG~~LatGs~DGsV~IWDl 151 (633)
.....+ .+.+|+.++.||.|+++|..+++.+..... ...+. ...+ .+..|++++.||.|+.++.
T Consensus 328 ~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 328 LTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 122222 366788999999999999999988766542 22232 2222 2558899999999998764
No 340
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.87 E-value=0.027 Score=67.90 Aligned_cols=110 Identities=13% Similarity=0.189 Sum_probs=73.5
Q ss_pred EEEccCCCeEEEEE-----eCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEeCCC--
Q 006743 43 LDYSRNSRHLLVTA-----GDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG---LDKKLYTYDPGS-- 112 (633)
Q Consensus 43 LafSpdg~~lLaSG-----s~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS---~DGtVrIWDlrt-- 112 (633)
|.|--||+ ++++. ...+.|+|||-++.- -..-....+.-.+++|-|.|.++++.. .|+.|.+|.-+.
T Consensus 201 IsWRgDg~-~fAVs~~~~~~~~RkirV~drEg~L--ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 201 ISWRGDGE-YFAVSFVESETGTRKIRVYDREGAL--NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred EEEccCCc-EEEEEEEeccCCceeEEEecccchh--hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 78998998 66662 223799999987321 111222334456899999999998865 345688887432
Q ss_pred -CceeeEee-CCCCeEEEEEecCCCEEEE---EEcCCeEEEEECCCCC
Q 006743 113 -RRPSSCIT-YEAPFSSLAFIDDDWILTA---GTSNGRVVFYDIRGKP 155 (633)
Q Consensus 113 -gk~v~~i~-h~~~ItsLafSPdG~~Lat---Gs~DGsV~IWDlrs~~ 155 (633)
+....-.. ....|..++|+.++..|++ ......|++|-..+..
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 22222222 2334999999999999997 4455569999998763
No 341
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.86 E-value=0.52 Score=51.65 Aligned_cols=150 Identities=16% Similarity=0.194 Sum_probs=89.0
Q ss_pred ccCCCCEEEEE-ECCC----cEEEEECCCCceeEEE-eCCCCCcEEEEEEccCCCeEEEEEeCC----------CeEEEE
Q 006743 2 YNCKDEHLASI-SLSG----DLILHNLASGAKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDD----------GTLHLW 65 (633)
Q Consensus 2 FSpdG~~LaSg-s~DG----~I~IWDl~tgk~v~~~-~~~~~~~VssLafSpdg~~lLaSGs~D----------GtI~IW 65 (633)
++|||++||.+ +..| .|+++|+++++.+... .. .....+.|.++++.++++...+ ..|+.|
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc---cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 68999988865 3444 4999999999876533 22 1122389999988666665433 247888
Q ss_pred ECCCCCce-eEEeccCCCC--eEEEEEcCCCCEEEEEeCC----CeEEEEeCCCC-----ceeeEeeCCCCeE-EEEEec
Q 006743 66 DTTGRSPK-VSWLKQHSAP--TAGISFSSDDKIIASVGLD----KKLYTYDPGSR-----RPSSCITYEAPFS-SLAFID 132 (633)
Q Consensus 66 Dl~t~~~~-v~~l~~H~~~--VtsLafSPdg~~LaSgS~D----GtVrIWDlrtg-----k~v~~i~h~~~It-sLafSP 132 (633)
++.+.... ...+...... ...+..++|+++|+..... ..|++.|+..+ ...........+. .+...
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~- 286 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH- 286 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-
Confidence 88665532 2333333332 5678889999987765432 35888899875 3333444444443 34443
Q ss_pred CCCEEEEEEc---CCeEEEEECCCCC
Q 006743 133 DDWILTAGTS---NGRVVFYDIRGKP 155 (633)
Q Consensus 133 dG~~LatGs~---DGsV~IWDlrs~~ 155 (633)
.+.+++.... ++.|.-.++....
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred CCEEEEeeCCCCCCcEEEEecccccc
Confidence 4434443332 4677778887764
No 342
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.15 Score=55.95 Aligned_cols=152 Identities=15% Similarity=0.113 Sum_probs=110.1
Q ss_pred CccCCCCEEEEEEC---CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE-
Q 006743 1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW- 76 (633)
Q Consensus 1 AFSpdG~~LaSgs~---DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~- 76 (633)
+|+++++.+.++.. ++.+.+.|..+++.+....... .. ..+++.|++...+++-..++.|.+.|..........
T Consensus 122 ~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~ 199 (381)
T COG3391 122 AVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSV 199 (381)
T ss_pred EECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccc
Confidence 47888988877655 6889999999888888765433 23 568999999866666668999999997766521000
Q ss_pred --eccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEe-eCCC-CeEEEEEecCCCEEEEEEcC-CeEEE
Q 006743 77 --LKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCI-TYEA-PFSSLAFIDDDWILTAGTSN-GRVVF 148 (633)
Q Consensus 77 --l~~H~~~VtsLafSPdg~~LaSgS~D---GtVrIWDlrtgk~v~~i-~h~~-~ItsLafSPdG~~LatGs~D-GsV~I 148 (633)
...-...-..+.+++++.++...... +.+...|..++...... .... ....+..+|+|.++.+.... +.|.+
T Consensus 200 ~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 200 GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 11222345778999999977666554 58999999988776652 2222 56778999999999888554 88999
Q ss_pred EECCCC
Q 006743 149 YDIRGK 154 (633)
Q Consensus 149 WDlrs~ 154 (633)
.|..+.
T Consensus 280 id~~~~ 285 (381)
T COG3391 280 IDGATD 285 (381)
T ss_pred EeCCCC
Confidence 998876
No 343
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=0.0014 Score=75.96 Aligned_cols=147 Identities=14% Similarity=0.196 Sum_probs=102.2
Q ss_pred EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEE
Q 006743 30 AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK--KLYT 107 (633)
Q Consensus 30 ~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG--tVrI 107 (633)
..|.. +....+|++|+-..+ .|+.|...|.|++|++.++.. .....+|..+|+.+.-+.+|..+++.+.-. ...+
T Consensus 1095 ~~frd-~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRD-ETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhhc-cccceeeEEeecCCc-eEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchHHH
Confidence 34444 456788999998877 799999999999999988874 456789999999999888988877665433 4678
Q ss_pred EeCCC-CceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccCCCeE
Q 006743 108 YDPGS-RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRAKPVF 182 (633)
Q Consensus 108 WDlrt-gk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~-~H~~~VtsLafsPdg~~L 182 (633)
|++.. +.+.+.+ ....++.|+..-..-+.|+....+.|||+.++..+...+... +....-.+..|+|+...+
T Consensus 1172 W~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99875 3333333 345667888765555667777789999999985443323211 122223667788854333
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.71 E-value=0.11 Score=53.73 Aligned_cols=104 Identities=11% Similarity=0.051 Sum_probs=68.9
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~Vt 85 (633)
|++++.|+..|.+++.+.++|.....+.....-.++ ....+++. ++..|+.|+..+..|..+..+. ...+.....-.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~g-lIycgshd~~~yalD~~~~~cV-ykskcgG~~f~ 139 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGG-LIYCGSHDGNFYALDPKTYGCV-YKSKCGGGTFV 139 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-eEEcCCCc-eEEEecCCCcEEEecccccceE-EecccCCceec
Confidence 678899999999999999999887777643332333 24556776 8999999999999999887753 33333333333
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 006743 86 GISFSSDDKIIASVGLDKKLYTYDPGS 112 (633)
Q Consensus 86 sLafSPdg~~LaSgS~DGtVrIWDlrt 112 (633)
+-+..|-...|+.+...|.|.-...+.
T Consensus 140 sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred cceecCCCceEEEEeccceEEEEccCC
Confidence 445566333444445555554444443
No 345
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0062 Score=68.93 Aligned_cols=87 Identities=24% Similarity=0.313 Sum_probs=72.6
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
|+|.-..+|.+..+|.|.++.++ .+++..+..+...+..+++|.|||. +|+.|-.||+|++.|+.++.........-.
T Consensus 28 wnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l~~~~~s~e 105 (665)
T KOG4640|consen 28 WNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRLVSFLFSVE 105 (665)
T ss_pred EcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCceeccccccc
Confidence 88999999999999999999987 7888888765555556999999998 999999999999999998875544444556
Q ss_pred CCeEEEEEc
Q 006743 82 APTAGISFS 90 (633)
Q Consensus 82 ~~VtsLafS 90 (633)
..|.++-|.
T Consensus 106 ~~is~~~w~ 114 (665)
T KOG4640|consen 106 TDISKGIWD 114 (665)
T ss_pred cchheeecc
Confidence 678888886
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.64 E-value=0.27 Score=52.21 Aligned_cols=162 Identities=11% Similarity=0.074 Sum_probs=95.7
Q ss_pred CCEEEEEEC----------CCcEEEEECCCC-----ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743 6 DEHLASISL----------SGDLILHNLASG-----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (633)
Q Consensus 6 G~~LaSgs~----------DG~I~IWDl~tg-----k~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~ 70 (633)
..+|++|.. .|.|.++++... +..........+.|.+|+-. +. .|+++. .+.|++|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCc
Confidence 357777643 288999999874 22222122235677777655 33 344433 489999999777
Q ss_pred C-ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeeEee---CCCCeEEEEEecCCCEEEEEEcCCe
Q 006743 71 S-PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-RRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGR 145 (633)
Q Consensus 71 ~-~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt-gk~v~~i~---h~~~ItsLafSPdG~~LatGs~DGs 145 (633)
+ ............|.++... +++|++|+..+.|.++..+. ...+..+. ....++++++-++++.++++..+|.
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 6 3333333333466666665 66999999888777664332 22233332 3556888888877679999999999
Q ss_pred EEEEECCCC------CC-ceEEEeecCCCCCeeEE
Q 006743 146 VVFYDIRGK------PQ-PLTVLRACSSSEAVSSL 173 (633)
Q Consensus 146 V~IWDlrs~------~k-~v~~l~~~~H~~~VtsL 173 (633)
|.++..... .. .+.....+.....|+++
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~ 230 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF 230 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence 999877631 11 23333333455667777
No 347
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.60 E-value=0.14 Score=46.67 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=70.7
Q ss_pred eEEEEEcC-CC---CEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006743 84 TAGISFSS-DD---KIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (633)
Q Consensus 84 VtsLafSP-dg---~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~ 159 (633)
|++|++.. ++ +.|++|+.|..||+|+-. ..+..+.-...|.+++-... ..++.+-.+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R----- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR----- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcce-----
Confidence 66777665 33 689999999999999854 67777777888999887766 67899999999999986442
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006743 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (633)
Q Consensus 160 ~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~Ik 204 (633)
.++. .....++++++..- ..++..-|++|-.+|.|-
T Consensus 74 lWRi-KSK~~~~~~~~~D~--------~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRI-KSKNQVTSMAFYDI--------NGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeee-ccCCCeEEEEEEcC--------CCCCceEEEEEecCCeEE
Confidence 2221 12334666665441 223444566666666653
No 348
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.14 Score=60.13 Aligned_cols=147 Identities=20% Similarity=0.310 Sum_probs=97.5
Q ss_pred CEEEEEECCC-----cEEEEECCCC------cee---EEE--eCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC--
Q 006743 7 EHLASISLSG-----DLILHNLASG------AKA---AEL--KDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-- 67 (633)
Q Consensus 7 ~~LaSgs~DG-----~I~IWDl~tg------k~v---~~~--~~~-~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl-- 67 (633)
++|++.+.|+ .|+||+++.- .++ ..+ +.+ ...++.+++.+.+-. .+|+|-.||.|..+.-
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDI 156 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcc
Confidence 4677666554 4899998642 122 111 222 356788889988865 8999999999999964
Q ss_pred -CCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-eEe-eCCCCeEEEEEecCCCEEEEEEcCC
Q 006743 68 -TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCI-TYEAPFSSLAFIDDDWILTAGTSNG 144 (633)
Q Consensus 68 -~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v-~~i-~h~~~ItsLafSPdG~~LatGs~DG 144 (633)
+..............+|+++++..++..++-+..-..|.+|.+....+. ..+ .++..+.|..+++....+++++. .
T Consensus 157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e 235 (933)
T KOG2114|consen 157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-E 235 (933)
T ss_pred hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-c
Confidence 2222123333445689999999988877333444456899998844422 323 57788999999876554655554 4
Q ss_pred eEEEEECCCCC
Q 006743 145 RVVFYDIRGKP 155 (633)
Q Consensus 145 sV~IWDlrs~~ 155 (633)
.|++||....+
T Consensus 236 ~l~fY~sd~~~ 246 (933)
T KOG2114|consen 236 FLYFYDSDGRG 246 (933)
T ss_pred eEEEEcCCCcc
Confidence 59999998653
No 349
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.54 E-value=0.0068 Score=40.28 Aligned_cols=36 Identities=33% Similarity=0.539 Sum_probs=32.0
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 006743 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109 (633)
Q Consensus 74 v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWD 109 (633)
...+..|...|.+++|.+++..+++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445667888999999999889999999999999996
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.50 E-value=0.16 Score=46.31 Aligned_cols=98 Identities=20% Similarity=0.234 Sum_probs=68.1
Q ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCC
Q 006743 44 DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA 123 (633)
Q Consensus 44 afSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~ 123 (633)
.|.-+|.+.|++|++|..|+||+-..- +..+..+ ..|.+++-... ..|+.+-.+|+|-+|+-.. .+..+..+.
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e~---~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRiKSK~ 81 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDEI---VAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRIKSKN 81 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCcE---EEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeeeccCC
Confidence 345566678999999999999987632 3344433 56777776644 7799999999999998632 222334445
Q ss_pred CeEEEEEec---CC-CEEEEEEcCCeEEE
Q 006743 124 PFSSLAFID---DD-WILTAGTSNGRVVF 148 (633)
Q Consensus 124 ~ItsLafSP---dG-~~LatGs~DGsV~I 148 (633)
.+.++++.. || .-|++|-.+|.|-+
T Consensus 82 ~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 82 QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 577776655 22 36888888888753
No 351
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.50 E-value=0.36 Score=52.18 Aligned_cols=178 Identities=18% Similarity=0.200 Sum_probs=95.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCC----------------CCcEEEEEEccCCCeEEEEEeCCCeE--
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPN----------------EQVLRVLDYSRNSRHLLVTAGDDGTL-- 62 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~----------------~~~VssLafSpdg~~lLaSGs~DGtI-- 62 (633)
.|+|+|+.+|... ++.|++++..++...+...... -..-..+.|+|+++++++.--++..|
T Consensus 49 ~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~ 127 (353)
T PF00930_consen 49 KWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPE 127 (353)
T ss_dssp EE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-E
T ss_pred eeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCce
Confidence 3899999998775 6799999987775443222210 11224578999999655544444433
Q ss_pred ---------------------------------EEEECCCCCce-eEEe---ccCCCCeEEEEEcCCCCEEEEEe--CCC
Q 006743 63 ---------------------------------HLWDTTGRSPK-VSWL---KQHSAPTAGISFSSDDKIIASVG--LDK 103 (633)
Q Consensus 63 ---------------------------------~IWDl~t~~~~-v~~l---~~H~~~VtsLafSPdg~~LaSgS--~DG 103 (633)
.|+|+.+++.. +... ..-...+..+.|.++++.|+..- .+.
T Consensus 128 ~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q 207 (353)
T PF00930_consen 128 YPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQ 207 (353)
T ss_dssp EEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTS
T ss_pred EEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCC
Confidence 33444443321 1111 12345678899999888444433 332
Q ss_pred ---eEEEEeCCCCceeeEe--eCCCCe---EEEEEe-cCC-CEEEEEEcCCeEEEE--ECCCCCCceEEEeecCCCCCee
Q 006743 104 ---KLYTYDPGSRRPSSCI--TYEAPF---SSLAFI-DDD-WILTAGTSNGRVVFY--DIRGKPQPLTVLRACSSSEAVS 171 (633)
Q Consensus 104 ---tVrIWDlrtgk~v~~i--~h~~~I---tsLafS-PdG-~~LatGs~DGsV~IW--Dlrs~~k~v~~l~~~~H~~~Vt 171 (633)
.+.++|..++.+.... ...+.| ....+. +++ .+|.....||.-+|| +...+ ..+.+. ...-.|.
T Consensus 208 ~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~--~~~~lT--~G~~~V~ 283 (353)
T PF00930_consen 208 NRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG--KPRQLT--SGDWEVT 283 (353)
T ss_dssp TEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS--EEEESS---SSS-EE
T ss_pred CEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc--ceeccc--cCceeec
Confidence 5778888877654433 233333 255554 554 555566677765554 55544 223333 2334454
Q ss_pred E-EEEccCCCeEE
Q 006743 172 S-LCWQRAKPVFI 183 (633)
Q Consensus 172 s-LafsPdg~~La 183 (633)
. +.|+++++.|.
T Consensus 284 ~i~~~d~~~~~iy 296 (353)
T PF00930_consen 284 SILGWDEDNNRIY 296 (353)
T ss_dssp EEEEEECTSSEEE
T ss_pred ccceEcCCCCEEE
Confidence 4 66777765554
No 352
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.47 E-value=0.13 Score=59.61 Aligned_cols=163 Identities=15% Similarity=0.175 Sum_probs=90.3
Q ss_pred CccCCCCEEEEEE------CCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC------------CC
Q 006743 1 MYNCKDEHLASIS------LSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD------------DG 60 (633)
Q Consensus 1 AFSpdG~~LaSgs------~DG--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~------------DG 60 (633)
+++++|+.++..- .|+ .|.+++. .+.. ..+... .....-.|+|+|+ .|++..+ .+
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g--~~~t~PsWspDG~-~lw~v~dg~~~~~v~~~~~~g 430 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG--HSLTRPSWSLDAD-AVWVVVDGNTVVRVIRDPATG 430 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC--CCCCCceECCCCC-ceEEEecCcceEEEeccCCCc
Confidence 4689999887654 233 5666664 3333 333221 2256678999977 4444432 23
Q ss_pred eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE---EeCCCCceeeE-----e--eCCCCeEEEEE
Q 006743 61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT---YDPGSRRPSSC-----I--TYEAPFSSLAF 130 (633)
Q Consensus 61 tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrI---WDlrtgk~v~~-----i--~h~~~ItsLaf 130 (633)
.+++.++..+.. .. .....|..++|+|||..|+... ++.|++ -....+. ... + .....+..+.|
T Consensus 431 ql~~~~vd~ge~--~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 431 QLARTPVDASAV--AS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred eEEEEeccCchh--hh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccceE
Confidence 444445544442 11 3356799999999999988877 467776 4434443 222 2 13344688999
Q ss_pred ecCCCEEEEEEcCCeEEEE--ECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743 131 IDDDWILTAGTSNGRVVFY--DIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (633)
Q Consensus 131 SPdG~~LatGs~DGsV~IW--Dlrs~~k~v~~l~~~~H~~~VtsLafsP 177 (633)
..++.++ ++..++...+| ++..... ..+........+..|+=.+
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~--~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVNLDGSNS--DALPSRNLSAPVVAVAASP 550 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEecCCccc--cccCCCCccCceEEEecCC
Confidence 9998854 55554444444 4443321 1112112245566666544
No 353
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.44 E-value=0.01 Score=68.90 Aligned_cols=108 Identities=13% Similarity=0.219 Sum_probs=82.6
Q ss_pred EEEEEccCCCeEEEEEe----CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006743 41 RVLDYSRNSRHLLVTAG----DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS 116 (633)
Q Consensus 41 ssLafSpdg~~lLaSGs----~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v 116 (633)
+...|+|... +|+.++ ..|.|.||--. +++.... ...-.++++||+|..-.|+.|=.-|.+.+|...+.+..
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfadt-GEPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFADT-GEPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEecC-CCCCccc--ccceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 4467999888 677665 46888888543 3322111 11223567999999889999999999999998876544
Q ss_pred eEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 117 SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 117 ~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
... .|..+|..+.|+++|..++++..-|.|.+|...
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 333 699999999999999999999999999999876
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.31 E-value=0.3 Score=50.67 Aligned_cols=143 Identities=16% Similarity=0.216 Sum_probs=85.6
Q ss_pred CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--
Q 006743 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-- 114 (633)
Q Consensus 38 ~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-- 114 (633)
..++.|.|+|+.+.++++....+.|..++..+.- ++.+. ...+...+|++..++.++++--.++.+.++++....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~v--lr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKV--LRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--E--EEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCE--EEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 3489999999988788888899999999986432 33332 223568899998777777766678999999884321
Q ss_pred --e--eeEe--e----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC--CCCceEEEee------cCCCCCeeEEEEc
Q 006743 115 --P--SSCI--T----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG--KPQPLTVLRA------CSSSEAVSSLCWQ 176 (633)
Q Consensus 115 --~--v~~i--~----h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs--~~k~v~~l~~------~~H~~~VtsLafs 176 (633)
. ...+ . ....+-.++|++.++.|+++.+..-..||.++. ....+..... ......+.+++++
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 1 1112 1 445689999999988888887776666776654 2111221111 1234457889999
Q ss_pred cCCCeE
Q 006743 177 RAKPVF 182 (633)
Q Consensus 177 Pdg~~L 182 (633)
|....+
T Consensus 180 p~t~~l 185 (248)
T PF06977_consen 180 PRTGHL 185 (248)
T ss_dssp TTTTEE
T ss_pred CCCCeE
Confidence 864333
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.27 E-value=0.18 Score=51.85 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=75.0
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee--------------
Q 006743 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-------------- 117 (633)
Q Consensus 52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~-------------- 117 (633)
.|+.|.++| |++|++.......... +...|..+...++-+.+++-+ |+.|+++|+..-....
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence 688889999 9999994333222222 233499999999777777766 4999999987543332
Q ss_pred -EeeCCCCeEEEE--EecCCCEEEEEEcCCeEEEEECCCCCCce-EEEeecCCCCCeeEEEEcc
Q 006743 118 -CITYEAPFSSLA--FIDDDWILTAGTSNGRVVFYDIRGKPQPL-TVLRACSSSEAVSSLCWQR 177 (633)
Q Consensus 118 -~i~h~~~ItsLa--fSPdG~~LatGs~DGsV~IWDlrs~~k~v-~~l~~~~H~~~VtsLafsP 177 (633)
.+.....+...+ -...+...++.....+|.+|......... ..++.+.-...+.+++|..
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~ 148 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG 148 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC
Confidence 122233444444 11234344444445589988887642222 3333344568899999984
No 356
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.26 E-value=0.76 Score=49.17 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=93.2
Q ss_pred cEEEEECCCCceeEEEe----CCCCCcEEEEEEccCCCeEEEEEe-----C-----CCeEEEEECCCCCceeEEeccCCC
Q 006743 17 DLILHNLASGAKAAELK----DPNEQVLRVLDYSRNSRHLLVTAG-----D-----DGTLHLWDTTGRSPKVSWLKQHSA 82 (633)
Q Consensus 17 ~I~IWDl~tgk~v~~~~----~~~~~~VssLafSpdg~~lLaSGs-----~-----DGtI~IWDl~t~~~~v~~l~~H~~ 82 (633)
-+.+++.+++..+..+. +......+.+...|+|+.++-+.+ . -|.|+.+|.. +. .++.+..+-.
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~-~~~l~~~~~~ 163 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GG-VVRLLDDDLT 163 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CC-EEEeecCcEE
Confidence 35666665555433322 112234556788899883222222 1 1334444432 22 2455556566
Q ss_pred CeEEEEEcCCCCEEEEEeCC-CeEEEEeCCC--C----ceeeE-e-eCCCCeEEEEEecCCCEEEEEEcCC-eEEEEECC
Q 006743 83 PTAGISFSSDDKIIASVGLD-KKLYTYDPGS--R----RPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNG-RVVFYDIR 152 (633)
Q Consensus 83 ~VtsLafSPdg~~LaSgS~D-GtVrIWDlrt--g----k~v~~-i-~h~~~ItsLafSPdG~~LatGs~DG-sV~IWDlr 152 (633)
.-+.|+|+||++.|+.+... +.|+.|++.. + +.... + ...+..-.++...+|.+.+++..+| .|.+|+..
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 77899999999888777654 7888887752 1 11111 1 2356677888888998887666665 89999998
Q ss_pred CCCCceEEEeecCCCCCeeEEEEc
Q 006743 153 GKPQPLTVLRACSSSEAVSSLCWQ 176 (633)
Q Consensus 153 s~~k~v~~l~~~~H~~~VtsLafs 176 (633)
+ +.+..+.. ....+++++|-
T Consensus 244 -G-~l~~~i~l--P~~~~t~~~Fg 263 (307)
T COG3386 244 -G-KLLGEIKL--PVKRPTNPAFG 263 (307)
T ss_pred -C-cEEEEEEC--CCCCCccceEe
Confidence 4 34555553 33778888885
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.14 E-value=0.016 Score=38.39 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=28.6
Q ss_pred eCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (633)
Q Consensus 120 ~h~~~ItsLafSPdG~~LatGs~DGsV~IWD 150 (633)
.+...|.+++|.+++.++++++.|+.|++||
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4778899999999999999999999999996
No 358
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.11 E-value=0.35 Score=56.21 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=78.8
Q ss_pred CcEEEEEEccCCCeEEEEEe-----CCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC--------
Q 006743 38 QVLRVLDYSRNSRHLLVTAG-----DDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD-------- 102 (633)
Q Consensus 38 ~~VssLafSpdg~~lLaSGs-----~DG--tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D-------- 102 (633)
..+...+++|+|+.+.++.. .|. .|.+++..+.. .....+ ....+-.|+|+|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence 35667899999985555542 243 45555653322 222333 237889999998888877543
Q ss_pred ----CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEE---EECCCCCCceE---EEeecCCCCCeeE
Q 006743 103 ----KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF---YDIRGKPQPLT---VLRACSSSEAVSS 172 (633)
Q Consensus 103 ----GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~I---WDlrs~~k~v~---~l~~~~H~~~Vts 172 (633)
+.+.+.+++.+.... ...+.|..+.|+|||..|+... +|.|++ -....+...+. .+. ..-...+..
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~-~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG-PGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee-cccCCcccc
Confidence 233333443333322 3356799999999999988766 477777 33333321110 011 123344678
Q ss_pred EEEccCCCe
Q 006743 173 LCWQRAKPV 181 (633)
Q Consensus 173 LafsPdg~~ 181 (633)
+.|..++..
T Consensus 502 l~W~~~~~L 510 (591)
T PRK13616 502 LDWRTGDSL 510 (591)
T ss_pred ceEecCCEE
Confidence 888886553
No 359
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.17 Score=56.82 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=88.3
Q ss_pred CeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEeCCCCce--eeEe-
Q 006743 50 RHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-------IIASVGLDKKLYTYDPGSRRP--SSCI- 119 (633)
Q Consensus 50 ~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~-------~LaSgS~DGtVrIWDlrtgk~--v~~i- 119 (633)
+-+|..+.....|+-.|++.++. +..+.-|.. |+-+.+.|+.+ .=+.|-.|+.|.-||+|-... +...
T Consensus 346 nlil~~~~~~~~l~klDIE~GKI-VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKI-VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ceEeeCCCCcCcceeeeccccee-eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 33455666667788889988884 666666655 77778877543 123456678899999984322 1111
Q ss_pred ----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 120 ----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 120 ----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
.......|.+-..+| +|++|+.+|.|++||-- +.+....+ ++-..+|+.|..+.+|++|++.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKTAl--PgLG~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKTAL--PGLGDAIKHVDVTADGKWILAT 489 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhhcc--cccCCceeeEEeeccCcEEEEe
Confidence 234456666655554 78999999999999973 32222223 3677999999999999998765
No 360
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.064 Score=64.48 Aligned_cols=146 Identities=10% Similarity=0.026 Sum_probs=94.2
Q ss_pred cEEEEEEccCCCeEEEE-EeCCCeEEEEECCCCCcee----------EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEE
Q 006743 39 VLRVLDYSRNSRHLLVT-AGDDGTLHLWDTTGRSPKV----------SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLY 106 (633)
Q Consensus 39 ~VssLafSpdg~~lLaS-Gs~DGtI~IWDl~t~~~~v----------~~l~~H~~~VtsLafSP-dg~~LaSgS~DGtVr 106 (633)
.+..+..++|+....+. .+.+-.|+.||++.-.... .........+.++.|+| -....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 34445556665422222 2334478999996433111 12223334567889999 344567778899888
Q ss_pred EEeCCCCc-eeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec--CCCCCeeEEEEccCCCeEE
Q 006743 107 TYDPGSRR-PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC--SSSEAVSSLCWQRAKPVFI 183 (633)
Q Consensus 107 IWDlrtgk-~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~--~H~~~VtsLafsPdg~~La 183 (633)
+.-+.... .+..+......+|++|+|.|+.+++|-..|++.-|...-..+ ..+... .....|.||+|-....+++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik--~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK--SEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee--ecccCCCcCCCcceeEEEEecceeEEE
Confidence 88775432 233345677899999999999999999999999997654311 112211 1246799999998888877
Q ss_pred Eec
Q 006743 184 DET 186 (633)
Q Consensus 184 s~s 186 (633)
..+
T Consensus 260 vy~ 262 (1405)
T KOG3630|consen 260 VYG 262 (1405)
T ss_pred Eec
Confidence 653
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.91 E-value=0.16 Score=56.98 Aligned_cols=136 Identities=10% Similarity=0.127 Sum_probs=78.9
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----------CceeE
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----------SPKVS 75 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~----------~~~v~ 75 (633)
|..|+..+.+ .|.+||+++++.++.+.. ..|..|.|+++++ +++..+ +..++|++.... +....
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~-~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~ 190 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSDDGE-LVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFE 190 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSS-EEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEECCCC-EEEEEe-CCeEEEEEecchhcccccccCchhceE
Confidence 6666666544 899999999999999974 2378899999998 555555 456777766433 11133
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
.+......|.+.+|..+ .|+..... .|++ +-.|..........++.=+.+.+..+.|.....|+.|..+.+.
T Consensus 191 ~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 191 LIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 34443578999999855 66666655 6777 4445544333446677777888877788888888888888765
No 362
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.90 E-value=2.7 Score=43.97 Aligned_cols=168 Identities=15% Similarity=0.185 Sum_probs=99.5
Q ss_pred CCCCEEEEEECCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006743 4 CKDEHLASISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (633)
Q Consensus 4 pdG~~LaSgs~DG--~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~ 81 (633)
.+|.++-+.+.-| .|+.+|+.+++......-....--..++.. ++.++.-.-.++...+||..+-+. +..+ ...
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~-~~~~-~y~ 129 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK-IGTF-PYP 129 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE-EEEE-E-S
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE-EEEE-ecC
Confidence 4566666666666 699999999998766554332222233333 234666667899999999988764 3333 233
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---C---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---Y---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---h---~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~ 155 (633)
+.=+.++ .+++.|+.......|+++|..+.+....+. . -..++-+.|. +|.+.|=.=....|...|..++
T Consensus 130 ~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG- 205 (264)
T PF05096_consen 130 GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG- 205 (264)
T ss_dssp SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT--
T ss_pred CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC-
Confidence 4556776 357777777778899999999877766553 1 2245566665 5555554545666777788877
Q ss_pred CceEEEeec-------------CCCCCeeEEEEccCC
Q 006743 156 QPLTVLRAC-------------SSSEAVSSLCWQRAK 179 (633)
Q Consensus 156 k~v~~l~~~-------------~H~~~VtsLafsPdg 179 (633)
+....+... ........|+|+|..
T Consensus 206 ~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~ 242 (264)
T PF05096_consen 206 KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET 242 (264)
T ss_dssp BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT
T ss_pred eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC
Confidence 333333211 113568899998863
No 363
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.89 E-value=0.53 Score=53.35 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=88.3
Q ss_pred CCCEEEEEECCC------------------cEEEEECCCCceeEEEeCCCCC-----cEEEEEEc----cCC--CeEEEE
Q 006743 5 KDEHLASISLSG------------------DLILHNLASGAKAAELKDPNEQ-----VLRVLDYS----RNS--RHLLVT 55 (633)
Q Consensus 5 dG~~LaSgs~DG------------------~I~IWDl~tgk~v~~~~~~~~~-----~VssLafS----pdg--~~lLaS 55 (633)
.+..++.++.++ .|.-+|.++|+.+-.++..... ......+. -++ ..+++.
T Consensus 227 ~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~ 306 (488)
T cd00216 227 KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVH 306 (488)
T ss_pred CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEE
Confidence 456777776665 7999999999988776532111 00000111 122 135788
Q ss_pred EeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEE------------------eCCCeEEEEeCCCCceee
Q 006743 56 AGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV------------------GLDKKLYTYDPGSRRPSS 117 (633)
Q Consensus 56 Gs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSg------------------S~DGtVrIWDlrtgk~v~ 117 (633)
++.+|.++..|.++++.. +-.... ...++..| ..++.+ ..+|.|..+|+.+++.+-
T Consensus 307 g~~~G~l~ald~~tG~~~--W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W 380 (488)
T cd00216 307 APKNGFFYVLDRTTGKLI--SARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVW 380 (488)
T ss_pred ECCCceEEEEECCCCcEe--eEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEee
Confidence 889999999999998843 211110 11233333 333332 246789999999998776
Q ss_pred EeeCC---------CCeE--EEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743 118 CITYE---------APFS--SLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (633)
Q Consensus 118 ~i~h~---------~~It--sLafSPdG~~LatGs~DGsV~IWDlrs~~k 156 (633)
..... .+.. .+. -.+..|++++.||.|+.+|.++++.
T Consensus 381 ~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 381 EKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred EeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCce
Confidence 65432 1111 122 2467889999999999999999853
No 364
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.84 E-value=0.49 Score=51.91 Aligned_cols=182 Identities=12% Similarity=0.085 Sum_probs=95.4
Q ss_pred CccCCCCEEEEEEC-C--CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006743 1 MYNCKDEHLASISL-S--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (633)
Q Consensus 1 AFSpdG~~LaSgs~-D--G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l 77 (633)
+|..||++|+.++. | ..+++.|+++++..+-..+...... ...++++++ .++-...+..|+--|+.+.+. ....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~-~~~Yv~~~~~l~~vdL~T~e~-~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDR-ALYYVKNGRSLRRVDLDTLEE-RVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSS-EEEEEETTTEEEEEETTT--E-EEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCC-eEEEEECCCeEEEEECCcCcE-EEEE
Confidence 58899987776654 4 4688889988877665543222222 245678877 444455567888899988773 2333
Q ss_pred ccCCCCeEEEEEc--CCCCEEEEEeC----------------------CCeEEEEeCCCCceeeEeeCCCCeEEEEEecC
Q 006743 78 KQHSAPTAGISFS--SDDKIIASVGL----------------------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD 133 (633)
Q Consensus 78 ~~H~~~VtsLafS--Pdg~~LaSgS~----------------------DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPd 133 (633)
......+-...|. .++..++-.-. .+.|...|+++|+...++.....+..+.|+|.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 3444555445564 35665543211 13577779999988888888889999999995
Q ss_pred -CCEEEEEEc---CCe-EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 134 -DWILTAGTS---NGR-VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 134 -G~~LatGs~---DGs-V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
...|+-|.+ +.. -+||-++....-.+.+........+..=-|.|+|..|...
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence 455555554 221 3566555433323333322334456666789998887654
No 365
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.82 E-value=1.2 Score=46.68 Aligned_cols=175 Identities=14% Similarity=0.114 Sum_probs=102.6
Q ss_pred eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 006743 28 KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKL 105 (633)
Q Consensus 28 ~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DG--tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtV 105 (633)
.+.++......-...+.|..++. ++-+.+.-| .|+.+|+.+++..........---..++.. +++.+.-.=.++..
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence 44555533345567788877775 777777766 689999998874322222222223344444 23344444467899
Q ss_pred EEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCCCeE
Q 006743 106 YTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAKPVF 182 (633)
Q Consensus 106 rIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~---~VtsLafsPdg~~L 182 (633)
.+||..+-+.+..+...+.-..++ .|++.|+.......|+++|..+.+ ..+.+....... .+..+.|. +| +|
T Consensus 113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~~g~pv~~LNELE~i-~G-~I 187 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTDNGRPVSNLNELEYI-NG-KI 187 (264)
T ss_dssp EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EETTEE---EEEEEEE-TT-EE
T ss_pred EEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccc-eEEEEEEEECCEECCCcEeEEEE-cC-EE
Confidence 999999999988888777777777 467888888888899999998763 333333222222 34556765 34 34
Q ss_pred EEeccCCCCeEEEEeeCCCeEEccCCC
Q 006743 183 IDETTCKAETALLGGAVGDSILMPDPL 209 (633)
Q Consensus 183 as~s~~sd~~lLlSgs~Dg~IkIWDlr 209 (633)
.+.-+..+..+.+.-.....+.++|+.
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls 214 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLS 214 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-H
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhh
Confidence 444466666666666656666666764
No 366
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.80 E-value=1.5 Score=48.21 Aligned_cols=195 Identities=14% Similarity=0.105 Sum_probs=111.6
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEE----ccCCCe--EEEEEeCC---CeEEEEECCCCCcee
Q 006743 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDY----SRNSRH--LLVTAGDD---GTLHLWDTTGRSPKV 74 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLaf----Spdg~~--lLaSGs~D---GtI~IWDl~t~~~~v 74 (633)
|...+|+...+++-+.+||+ +|+.+..+... .++.|.. .-.++. ++++...+ ..|++|.+......+
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~G---r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPVG---RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-EEEEE-SS----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred cccceEEEEeCCCCEEEEcC-CCcEEEeecCC---CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 33457777788899999998 67777777532 2232222 113332 23344433 479999886432223
Q ss_pred EEecc-------CCCCeEEEEE--cC-CCC-EEEEEeCCCeEEEEeCC---CC----ceeeEeeCCCCeEEEEEecCCCE
Q 006743 75 SWLKQ-------HSAPTAGISF--SS-DDK-IIASVGLDKKLYTYDPG---SR----RPSSCITYEAPFSSLAFIDDDWI 136 (633)
Q Consensus 75 ~~l~~-------H~~~VtsLaf--SP-dg~-~LaSgS~DGtVrIWDlr---tg----k~v~~i~h~~~ItsLafSPdG~~ 136 (633)
..+.. ....++.+|+ ++ ++. +++....+|.+..|-+. .+ +.++.+.....+..|..+....+
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR 221 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Confidence 33321 1234778887 34 454 56677788987777653 33 35677777789999999999999
Q ss_pred EEEEEcCCeEEEEECCCCC--CceEEEee--cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 137 LTAGTSNGRVVFYDIRGKP--QPLTVLRA--CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 137 LatGs~DGsV~IWDlrs~~--k~v~~l~~--~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
|..+-++.-|.-|+.+-.. ....+... .....-|..|+.-.. ....+.++++.-.++...|||...
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~--------~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG--------SDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE---------CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEec--------CCCCeEEEEEcCCCCeEEEEecCC
Confidence 9999999888888887322 22111111 123345666665431 122445666666688999998763
No 367
>PHA02713 hypothetical protein; Provisional
Probab=95.78 E-value=0.34 Score=55.88 Aligned_cols=142 Identities=14% Similarity=0.128 Sum_probs=71.1
Q ss_pred CCCEEEEEECC------CcEEEEECCCCceeEEEeCC-CCCcEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCCc
Q 006743 5 KDEHLASISLS------GDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGRSP 72 (633)
Q Consensus 5 dG~~LaSgs~D------G~I~IWDl~tgk~v~~~~~~-~~~~VssLafSpdg~~lLaSGs~DG-----tI~IWDl~t~~~ 72 (633)
+++.++.||.+ ..+..||..++... .+..- ....-.+++ .-++. +++.|+.++ .+..||..+...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~-~~~g~-IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLA-VIDDT-IYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEE-EECCE-EEEECCcCCCCCCceEEEEECCCCeE
Confidence 45555666643 24778887665432 11110 111011122 22344 778888764 488899876652
Q ss_pred eeEEeccCCCCe--EEEEEcCCCCEEEEEeCCC-----------------------eEEEEeCCCCceeeEee--CCCCe
Q 006743 73 KVSWLKQHSAPT--AGISFSSDDKIIASVGLDK-----------------------KLYTYDPGSRRPSSCIT--YEAPF 125 (633)
Q Consensus 73 ~v~~l~~H~~~V--tsLafSPdg~~LaSgS~DG-----------------------tVrIWDlrtgk~v~~i~--h~~~I 125 (633)
. .+.....+. .+++. -++++.+.|+.++ .|..||.++.+-...-. ....-
T Consensus 380 ~--~~~~mp~~r~~~~~~~-~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~ 456 (557)
T PHA02713 380 K--MLPDMPIALSSYGMCV-LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR 456 (557)
T ss_pred E--ECCCCCcccccccEEE-ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc
Confidence 2 111111111 11111 2577778887652 47789988765432221 11111
Q ss_pred EEEEEecCCCEEEEEEcCC------eEEEEECCC
Q 006743 126 SSLAFIDDDWILTAGTSNG------RVVFYDIRG 153 (633)
Q Consensus 126 tsLafSPdG~~LatGs~DG------sV~IWDlrs 153 (633)
.+++ .-+|++.++|+.++ .|..||..+
T Consensus 457 ~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 457 PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred CcEE-EECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 1122 22467777777542 467899887
No 368
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.73 E-value=1.4 Score=45.52 Aligned_cols=143 Identities=11% Similarity=0.096 Sum_probs=85.0
Q ss_pred cEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCce
Q 006743 39 VLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-PGSRRP 115 (633)
Q Consensus 39 ~VssLafSpdg~~lLaSGs--~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWD-lrtgk~ 115 (633)
.+...+++++++.+.+... ....++++...... ...+. ...+....|++++...+....+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 5677899999985555552 33445555544332 22222 23788889999988777777666666663 333332
Q ss_pred eeE-e--e-CCCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCC-C-ceEE---Eee-cCCCCCeeEEEEccCCCeE
Q 006743 116 SSC-I--T-YEAPFSSLAFIDDDWILTAGT---SNGRVVFYDIRGKP-Q-PLTV---LRA-CSSSEAVSSLCWQRAKPVF 182 (633)
Q Consensus 116 v~~-i--~-h~~~ItsLafSPdG~~LatGs---~DGsV~IWDlrs~~-k-~v~~---l~~-~~H~~~VtsLafsPdg~~L 182 (633)
... . . ....|..+.++|||..++... .++.|++--+.... . +... +.. ......++.+.|.+++.++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 221 1 1 222899999999999888665 35777776543211 1 1111 111 1235678999999875554
Q ss_pred EEe
Q 006743 183 IDE 185 (633)
Q Consensus 183 as~ 185 (633)
+..
T Consensus 181 V~~ 183 (253)
T PF10647_consen 181 VLG 183 (253)
T ss_pred EEe
Confidence 443
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.69 E-value=1.1 Score=49.19 Aligned_cols=113 Identities=20% Similarity=0.251 Sum_probs=73.9
Q ss_pred EEEEEEccCCCeEEEEEeCCC----eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----------e
Q 006743 40 LRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK-----------K 104 (633)
Q Consensus 40 VssLafSpdg~~lLaSGs~DG----tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG-----------t 104 (633)
+..+.++|+++.++++.+..| .|+++|+.+++.....+... .-..+.|.++++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 335788999996666656655 49999999887433332221 122399999988877765333 4
Q ss_pred EEEEeCCCCcee--eEee--CCCC-eEEEEEecCCCEEEEEEcC----CeEEEEECCCC
Q 006743 105 LYTYDPGSRRPS--SCIT--YEAP-FSSLAFIDDDWILTAGTSN----GRVVFYDIRGK 154 (633)
Q Consensus 105 VrIWDlrtgk~v--~~i~--h~~~-ItsLafSPdG~~LatGs~D----GsV~IWDlrs~ 154 (633)
|++|.+.+.... .++. .... ...+..++|+++|+..... ..|++.|+...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 889999876543 3332 2333 6788999999998865432 34888888774
No 370
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.62 E-value=0.49 Score=49.20 Aligned_cols=109 Identities=11% Similarity=0.063 Sum_probs=81.5
Q ss_pred EccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCC
Q 006743 45 YSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP 124 (633)
Q Consensus 45 fSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ 124 (633)
..++...+++.|+..+.+.--|..+++ +.+-..-...|.+-+.- -|+.++.|+..|.+++.+.++|.....+...+.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~--~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGN--LIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCc--EEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 345556689999999999999998887 34433344455544433 477899999999999999999977666644344
Q ss_pred eE-EEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743 125 FS-SLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (633)
Q Consensus 125 It-sLafSPdG~~LatGs~DGsV~IWDlrs~~k 156 (633)
|. .....+++..|.+|+.|+..+..|.++...
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccce
Confidence 33 344567899999999999999999998753
No 371
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.62 E-value=1.3 Score=50.29 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=90.0
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCC-----Cc-E-EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELKDPNE-----QV-L-RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~-----~~-V-ssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~ 78 (633)
+..++.++.++.|+.+|..+|+.+-.+..... .. + ..+... ++. .++.++.++.|+-+|.++++.. +-.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~-~V~v~~~~g~v~AlD~~TG~~~--W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR-KVFFGTFDGRLVALDAETGKQV--WKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC-eEEEecCCCeEEEEECCCCCEe--eee
Confidence 45677788899999999999988876653221 00 0 011111 213 5778889999999999988733 211
Q ss_pred cCCCCe---EEEEEcC--CCCEEEEEe---------CCCeEEEEeCCCCceeeEeeCC-C--------------------
Q 006743 79 QHSAPT---AGISFSS--DDKIIASVG---------LDKKLYTYDPGSRRPSSCITYE-A-------------------- 123 (633)
Q Consensus 79 ~H~~~V---tsLafSP--dg~~LaSgS---------~DGtVrIWDlrtgk~v~~i~h~-~-------------------- 123 (633)
.-...+ ..+.-.| .+.+++.++ .++.|..+|..+++.+-..... .
T Consensus 137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 111110 1122222 234555554 3678999999999887655321 0
Q ss_pred Ce-EEEEEecCCCEEEEEEcCC------------------eEEEEECCCCCCc
Q 006743 124 PF-SSLAFIDDDWILTAGTSNG------------------RVVFYDIRGKPQP 157 (633)
Q Consensus 124 ~I-tsLafSPdG~~LatGs~DG------------------sV~IWDlrs~~k~ 157 (633)
.+ ...++++.+..|++++.++ .|+-+|+++++..
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 01 1244555567788887665 7899999988543
No 372
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.28 E-value=0.59 Score=54.18 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=83.3
Q ss_pred CCCEEEEEECC-C-----cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe-----EEEEECCCCCce
Q 006743 5 KDEHLASISLS-G-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-----LHLWDTTGRSPK 73 (633)
Q Consensus 5 dG~~LaSgs~D-G-----~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt-----I~IWDl~t~~~~ 73 (633)
+|...++||.| | .+..||..+++-.. +..-...... +....-+..+.+.|+.||. |..||..+.+..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~-~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSD-FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCcccc-ceeEEECCEEEEEeccccccccccEEEecCCCCccc
Confidence 45677888888 3 57788887766332 1110111111 1111112348889999874 888888776632
Q ss_pred eEEeccCCCCeEEEEEcC-CCCEEEEEeCCC------eEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEcCC
Q 006743 74 VSWLKQHSAPTAGISFSS-DDKIIASVGLDK------KLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNG 144 (633)
Q Consensus 74 v~~l~~H~~~VtsLafSP-dg~~LaSgS~DG------tVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~DG 144 (633)
..-.......+..... ++++.++|+.++ .|..||..+++-...-. .......++. -++.+.++|+.|+
T Consensus 410 --~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 410 --PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDG 486 (571)
T ss_pred --ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccC
Confidence 2222222333333333 688888888665 57899998876544332 1111111222 2577888888776
Q ss_pred e-----EEEEECCCC
Q 006743 145 R-----VVFYDIRGK 154 (633)
Q Consensus 145 s-----V~IWDlrs~ 154 (633)
. |..||..+.
T Consensus 487 ~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 487 TSALSSVERYDPETN 501 (571)
T ss_pred CCccceEEEEcCCCC
Confidence 3 788998876
No 373
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.22 E-value=1.9 Score=46.68 Aligned_cols=192 Identities=12% Similarity=0.108 Sum_probs=109.9
Q ss_pred ccCCCCEEEEEE--CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CCceeE---
Q 006743 2 YNCKDEHLASIS--LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RSPKVS--- 75 (633)
Q Consensus 2 FSpdG~~LaSgs--~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t-~~~~v~--- 75 (633)
++.||+++++.. -.-.|.|-|+..++.+.++.. .++. -..|.++.-|.+-|.||.+.-..+.. ++....
T Consensus 102 ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~---~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 102 LSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCW---LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp E-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEE---EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred EccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEE---EEEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence 567777776643 345688888888888887763 2222 22344433588889999999998863 332211
Q ss_pred EeccCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe--e-----------CCCCeEEEEEecCCCEEEEEE
Q 006743 76 WLKQHSAPT-AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--T-----------YEAPFSSLAFIDDDWILTAGT 141 (633)
Q Consensus 76 ~l~~H~~~V-tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i--~-----------h~~~ItsLafSPdG~~LatGs 141 (633)
.+..-..++ ..-++...+..++-.+.+|.|+-.|+......... . ..+...-+++++..+.|++--
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 111112222 23344455556666899999999998765432211 1 123445577887655544332
Q ss_pred c---CC-------eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe-eCCCeEEccCCCC
Q 006743 142 S---NG-------RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG-AVGDSILMPDPLP 210 (633)
Q Consensus 142 ~---DG-------sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSg-s~Dg~IkIWDlr~ 210 (633)
. +| .|.+||+.+.+ .+..+. -..++.+|..+.+ +..+|++. ..++.+.+||...
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~k-rv~Ri~---l~~~~~Si~Vsqd-----------~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHK-RVARIP---LEHPIDSIAVSQD-----------DKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTE-EEEEEE---EEEEESEEEEESS-----------SS-EEEEEETTTTEEEEEETTT
T ss_pred cCCCCCCccCCceEEEEEECCCCe-EEEEEe---CCCccceEEEccC-----------CCcEEEEEcCCCCeEEEEeCcC
Confidence 1 22 37788888873 333333 2345778888764 55555554 3478999999876
Q ss_pred CCC
Q 006743 211 SVT 213 (633)
Q Consensus 211 ~~~ 213 (633)
-..
T Consensus 322 Gk~ 324 (342)
T PF06433_consen 322 GKL 324 (342)
T ss_dssp --E
T ss_pred CcE
Confidence 544
No 374
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.18 E-value=0.65 Score=53.85 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=83.6
Q ss_pred CCEEEEEECCC------cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCCce
Q 006743 6 DEHLASISLSG------DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLWDTTGRSPK 73 (633)
Q Consensus 6 G~~LaSgs~DG------~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D------GtI~IWDl~t~~~~ 73 (633)
+..++.||.++ .|..||..++.......-.....-.+++...+ .++++|+.| ..+..||....+..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCcee
Confidence 45677787773 58889987775433222222222233444433 488999998 35888898776632
Q ss_pred eEEeccCCCCeEEEEEcC-CCCEEEEEeCCC-----eEEEEeCCCCceeeEeeCCCCeEEEEE-ecCCCEEEEEEcCC--
Q 006743 74 VSWLKQHSAPTAGISFSS-DDKIIASVGLDK-----KLYTYDPGSRRPSSCITYEAPFSSLAF-IDDDWILTAGTSNG-- 144 (633)
Q Consensus 74 v~~l~~H~~~VtsLafSP-dg~~LaSgS~DG-----tVrIWDlrtgk~v~~i~h~~~ItsLaf-SPdG~~LatGs~DG-- 144 (633)
.+..-...-..+.... +|.+.++|+.|| +|-.||.++.+-...-........... .-+|.+.++|+.++
T Consensus 363 --~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 --PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred --ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 1111111111222222 688999999997 588899887654333222212222211 22577888888654
Q ss_pred ----eEEEEECCCC
Q 006743 145 ----RVVFYDIRGK 154 (633)
Q Consensus 145 ----sV~IWDlrs~ 154 (633)
.|..||..+.
T Consensus 441 ~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 441 NCLNSVECYDPETN 454 (571)
T ss_pred cccceEEEEcCCCC
Confidence 4788998876
No 375
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.13 E-value=0.035 Score=56.36 Aligned_cols=102 Identities=8% Similarity=0.058 Sum_probs=63.3
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEE-EcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CC-CCeEEE
Q 006743 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGIS-FSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YE-APFSSL 128 (633)
Q Consensus 52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLa-fSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~-~~ItsL 128 (633)
.+++|+.+|.|++|..................|-++- --.++.+.++++.|+.|+.|++.-.+.+-... |. .++...
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 5889999999999988632211111222223333332 22366789999999999999998877766654 44 344444
Q ss_pred EEecCCCEEEEE--EcCCeEEEEECCC
Q 006743 129 AFIDDDWILTAG--TSNGRVVFYDIRG 153 (633)
Q Consensus 129 afSPdG~~LatG--s~DGsV~IWDlrs 153 (633)
.....++.|+.. +.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 444445555555 5566666666654
No 376
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.08 E-value=1.2 Score=49.27 Aligned_cols=189 Identities=15% Similarity=0.146 Sum_probs=100.8
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEe-------CCCCCcEEEEEEcc-----CC--CeEEEEEeCCCeEEEEECCC--
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELK-------DPNEQVLRVLDYSR-----NS--RHLLVTAGDDGTLHLWDTTG-- 69 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~-------~~~~~~VssLafSp-----dg--~~lLaSGs~DGtI~IWDl~t-- 69 (633)
=.++|.|..+|.+.|.|++....+..-. ......++++.|.- |+ .-++++|...|.+.+|.+.-
T Consensus 97 iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~ 176 (395)
T PF08596_consen 97 IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSS 176 (395)
T ss_dssp TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-G
T ss_pred CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCC
Confidence 3478999999999999997766655421 12345677788862 11 13688899999999998841
Q ss_pred -CCce---eEEeccCCCCeEEEE-EcCC--------------------CCEEEEEeCCCeEEEEeCCCCceeeEee-CCC
Q 006743 70 -RSPK---VSWLKQHSAPTAGIS-FSSD--------------------DKIIASVGLDKKLYTYDPGSRRPSSCIT-YEA 123 (633)
Q Consensus 70 -~~~~---v~~l~~H~~~VtsLa-fSPd--------------------g~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~ 123 (633)
+... ......+.+.|..|. ++.+ -.-++....+..+|++..-+.+.....- ...
T Consensus 177 ~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~ 256 (395)
T PF08596_consen 177 NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPF 256 (395)
T ss_dssp GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-E
T ss_pred CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeecccc
Confidence 1111 112234566666665 3211 1124444456779999998877654433 222
Q ss_pred CeEEEEEe-----cCCCEEEEEEcCCeEEEEECCCCCCceEEEeec--CCCCCeeEEEEccCCCeEEEeccCCCCeEEEE
Q 006743 124 PFSSLAFI-----DDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC--SSSEAVSSLCWQRAKPVFIDETTCKAETALLG 196 (633)
Q Consensus 124 ~ItsLafS-----PdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~--~H~~~VtsLafsPdg~~Las~s~~sd~~lLlS 196 (633)
.+..+++- ..+..|++-..+|.|++|.+..-+ .+..+... .+...+...++.++|..++..+ ..+..+++
T Consensus 257 ~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk-ei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g--psE~~l~s 333 (395)
T PF08596_consen 257 LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK-EIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG--PSEIQLFS 333 (395)
T ss_dssp EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S--SSEEEEEE
T ss_pred ccceEEEEeecccCCceEEEEEECCCcEEEEECCCch-HhhcccCCCccccccccccEECCCCCEEEEeC--cccEEEEE
Confidence 33444553 356788899999999999998863 33333321 1223455677788888776552 23444444
Q ss_pred e
Q 006743 197 G 197 (633)
Q Consensus 197 g 197 (633)
.
T Consensus 334 v 334 (395)
T PF08596_consen 334 V 334 (395)
T ss_dssp E
T ss_pred E
Confidence 3
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.21 Score=56.18 Aligned_cols=138 Identities=12% Similarity=0.141 Sum_probs=92.5
Q ss_pred EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCe------EEEEEeCCCeEEEEECCCCCc-eeEEeccCC-
Q 006743 10 ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRH------LLVTAGDDGTLHLWDTTGRSP-KVSWLKQHS- 81 (633)
Q Consensus 10 aSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~------lLaSGs~DGtI~IWDl~t~~~-~v~~l~~H~- 81 (633)
..+.....|+-.|++.|+.+.+.+-+.. |..+.+.|+... --+.|-.|..|+-||.+-... ++.+...|.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 3455566788899999999988875333 566777776420 123566788899999864432 233333332
Q ss_pred ---CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-eEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 82 ---APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 82 ---~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v-~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
..-.|++-. ...+|++|+.+|.||+||- .++.. ..+ +.+.+|..+..+.+|++|++.+. .++.+.|+.
T Consensus 428 ~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDTL 500 (644)
T ss_pred ccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEEe
Confidence 223444443 4458999999999999997 44332 223 57889999999999999876654 556666654
No 378
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=0.083 Score=63.30 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=73.0
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCC---eEE
Q 006743 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAP---FSS 127 (633)
Q Consensus 52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~---Its 127 (633)
.++.|+..|.|...|..+.-...+.-....++|++++|+.+|..++.|-.+|-|.+||+..++..+.+. +..+ +..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 688899999999999877543333334456899999999999999999999999999999988887773 4444 444
Q ss_pred EEEecCCCEEEEEEcCCe
Q 006743 128 LAFIDDDWILTAGTSNGR 145 (633)
Q Consensus 128 LafSPdG~~LatGs~DGs 145 (633)
+.+..++..++++...|.
T Consensus 181 v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEeCCCcEEEEccCCCc
Confidence 455556777888877776
No 379
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.81 E-value=0.078 Score=53.87 Aligned_cols=103 Identities=14% Similarity=0.199 Sum_probs=56.9
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCCceeEEeccCC-C
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS-A 82 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~--~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~-~ 82 (633)
+..++.|+.+|.|++|++.--.............|.++ -|.++ .+.++++.||.|+.|.+.-.+. +-....|+ .
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~--Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~ 146 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG--IPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFE 146 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceec--cccccccceeEEeccCCceeeeccccCce-eeeeccccCC
Confidence 35678899999999999862221111111122333322 23333 2899999999999999976662 33344454 3
Q ss_pred CeEEEEEcCCCCEEEEE--eCCCeEEEEeCC
Q 006743 83 PTAGISFSSDDKIIASV--GLDKKLYTYDPG 111 (633)
Q Consensus 83 ~VtsLafSPdg~~LaSg--S~DGtVrIWDlr 111 (633)
.+..+..+..++.++.. +.|..++.|++.
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcchh
Confidence 33333333334444444 444444455443
No 380
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.69 E-value=5.7 Score=45.69 Aligned_cols=197 Identities=10% Similarity=-0.027 Sum_probs=107.2
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEE----------EEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR----------VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~Vs----------sLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~ 75 (633)
+..|++++.++.|+-+|..+|+.+-++.......+. .+++. +. .++.++.|+.|.-.|..+++..-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~-~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG-KVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC-EEEEEcCCCEEEEEECCCCCEEee
Confidence 457778888899999999999988776532111111 11222 23 467788899999999998884311
Q ss_pred Eec-cCCCCeEEEEEcC--CCCEEEEEe------CCCeEEEEeCCCCceeeEeeC--CC---------------------
Q 006743 76 WLK-QHSAPTAGISFSS--DDKIIASVG------LDKKLYTYDPGSRRPSSCITY--EA--------------------- 123 (633)
Q Consensus 76 ~l~-~H~~~VtsLafSP--dg~~LaSgS------~DGtVrIWDlrtgk~v~~i~h--~~--------------------- 123 (633)
.-. .+.. -..+.-.| .+..++++. .+|.|..+|.++|+.+-.+.. ..
T Consensus 146 ~~~~~~~~-~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKA-GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccc-cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 111 1110 01111122 233455543 268999999999987755421 00
Q ss_pred ---------Ce-EEEEEecCCCEEEEEEcC-----C-----------eEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006743 124 ---------PF-SSLAFIDDDWILTAGTSN-----G-----------RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (633)
Q Consensus 124 ---------~I-tsLafSPdG~~LatGs~D-----G-----------sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsP 177 (633)
.+ ..+.++|....|..+..+ + .|.-.|+++++. .-.++...|... .|+.
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~-~W~~Q~~~~D~w----D~d~ 299 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI-KWHYQTTPHDEW----DYDG 299 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE-EEeeeCCCCCCc----cccC
Confidence 01 134666666666666532 2 466677777742 222333233322 1211
Q ss_pred -CCCeEEEeccCCCC--eEEEEeeCCCeEEccCCCCCC
Q 006743 178 -AKPVFIDETTCKAE--TALLGGAVGDSILMPDPLPSV 212 (633)
Q Consensus 178 -dg~~Las~s~~sd~--~lLlSgs~Dg~IkIWDlr~~~ 212 (633)
....|+.. ..++. .+++.+..+|.+.+.|-+.-.
T Consensus 300 ~~~p~l~d~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 300 VNEMILFDL-KKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred CCCcEEEEe-ccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 22333322 11222 466677778888887775443
No 381
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=1.7 Score=52.95 Aligned_cols=135 Identities=12% Similarity=0.021 Sum_probs=87.2
Q ss_pred cCCCCEEEEE--ECCCcEEEEECCCCceeE-----EEeC-----CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743 3 NCKDEHLASI--SLSGDLILHNLASGAKAA-----ELKD-----PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (633)
Q Consensus 3 SpdG~~LaSg--s~DG~I~IWDl~tgk~v~-----~~~~-----~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~ 70 (633)
.+|+...++. .++-.|+.||+++-..-. -++. .......++.|+|.-....+.+..|+.|+|..+...
T Consensus 109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~ 188 (1405)
T KOG3630|consen 109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL 188 (1405)
T ss_pred ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence 4555544433 333478889986532111 0111 112334568899876555778888999999887654
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-----CCCCeEEEEEecCCCEEEE
Q 006743 71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-----YEAPFSSLAFIDDDWILTA 139 (633)
Q Consensus 71 ~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-----h~~~ItsLafSPdG~~Lat 139 (633)
...+.. ......++|++|+|.|+.++.|-..|++.-|-..- +....+. ....|.||+|--...++++
T Consensus 189 ~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 189 AQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 433333 23456789999999999999999999999887642 2222221 2478999999876666654
No 382
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.47 E-value=0.8 Score=50.71 Aligned_cols=76 Identities=21% Similarity=0.180 Sum_probs=54.3
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---------CCCCeEEEEEec-----CC---CEEE
Q 006743 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFID-----DD---WILT 138 (633)
Q Consensus 76 ~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---------h~~~ItsLafSP-----dG---~~La 138 (633)
.+....++|++++.+ |=-+++.|..+|.+.|.|+|....+.... ....++++.|.- |+ -.++
T Consensus 81 l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 81 LLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp EE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred heeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 344557899999998 66689999999999999999877765532 234688888874 33 4688
Q ss_pred EEEcCCeEEEEECC
Q 006743 139 AGTSNGRVVFYDIR 152 (633)
Q Consensus 139 tGs~DGsV~IWDlr 152 (633)
+|+..|.+.+|.+.
T Consensus 160 vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 160 VGTNSGNVLTFKIL 173 (395)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCCEEEEEEe
Confidence 99999999999875
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.43 E-value=1.2 Score=46.94 Aligned_cols=184 Identities=14% Similarity=0.161 Sum_probs=106.1
Q ss_pred EEEEECCCCceeEEEeCCCCC-cEEEEEEccCCCeEEEEEeC-----CCeEEEEECCCCCceeEEeccCCCCeEEEEEcC
Q 006743 18 LILHNLASGAKAAELKDPNEQ-VLRVLDYSRNSRHLLVTAGD-----DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS 91 (633)
Q Consensus 18 I~IWDl~tgk~v~~~~~~~~~-~VssLafSpdg~~lLaSGs~-----DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP 91 (633)
..++|..+.+....+...... -.-.=+|+++|+ +|++.-. -|.|-|||.+..-..+-.+..|.-.-..+.|.+
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~ 171 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA 171 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec
Confidence 456777666554444321111 111125899998 5555433 367999999876655667778888888999999
Q ss_pred CCCEEEEEeC------------------CCeEEEEeCCCCceeeEee-----CCCCeEEEEEecCCCEEEEEEcCCeE--
Q 006743 92 DDKIIASVGL------------------DKKLYTYDPGSRRPSSCIT-----YEAPFSSLAFIDDDWILTAGTSNGRV-- 146 (633)
Q Consensus 92 dg~~LaSgS~------------------DGtVrIWDlrtgk~v~~i~-----h~~~ItsLafSPdG~~LatGs~DGsV-- 146 (633)
||+.++.+.. .-.+.+.|..++..+.... +.-.|..++..+||.+++.+-..|--
T Consensus 172 DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d 251 (366)
T COG3490 172 DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRND 251 (366)
T ss_pred CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCcc
Confidence 9999988753 1135556656666554332 34568888888888777665543310
Q ss_pred --EEEECCCCCCceEEEeec-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 147 --VFYDIRGKPQPLTVLRAC-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 147 --~IWDlrs~~k~v~~l~~~-----~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
-+.-...+.++++.+... .-...|-+|+.+. .++.+.++.-..+...+||...-..
T Consensus 252 ~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-----------~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 252 LPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-----------RDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred CCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-----------cCCeEEEecCCCCeEEEEEcCCCcE
Confidence 000111111222222211 1123344555443 3566666666778888998855443
No 384
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.39 E-value=4.9 Score=44.29 Aligned_cols=175 Identities=11% Similarity=0.155 Sum_probs=87.7
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC---CCe-EEEEECCCCCceeEEeccCCC--CeEEEEEc
Q 006743 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---DGT-LHLWDTTGRSPKVSWLKQHSA--PTAGISFS 90 (633)
Q Consensus 17 ~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~---DGt-I~IWDl~t~~~~v~~l~~H~~--~VtsLafS 90 (633)
.|...|+.+|+....+. ....+..+.|+|....+|+-|-+ +.. -+||-+.........+..|.. .+..=-|.
T Consensus 169 ~i~~idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred eEEEEECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 35566777776655554 34566778999988866666543 332 477776443323444444432 22333578
Q ss_pred CCCCEEEEEeC-----CCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCC----------------eEEEE
Q 006743 91 SDDKIIASVGL-----DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG----------------RVVFY 149 (633)
Q Consensus 91 Pdg~~LaSgS~-----DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DG----------------sV~IW 149 (633)
|||..|...+. +..|.-+|+.+++....... .+....-.++||+.++-=+.|. .|+++
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~ 325 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF 325 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence 89988776543 45788889998766543332 2455666778998877544432 56778
Q ss_pred ECCCCCCceEEEeec-------CCCC--CeeEEEEccCCCeEEEeccCCCCeEEEE
Q 006743 150 DIRGKPQPLTVLRAC-------SSSE--AVSSLCWQRAKPVFIDETTCKAETALLG 196 (633)
Q Consensus 150 Dlrs~~k~v~~l~~~-------~H~~--~VtsLafsPdg~~Las~s~~sd~~lLlS 196 (633)
++..... ..+..+ .+.. .=..+.|+||+++++..++..+...++.
T Consensus 326 ~~~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 326 DVEAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp ETTTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred ccccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 8876421 222211 1111 1246889999988877765555544443
No 385
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=8.6 Score=40.98 Aligned_cols=162 Identities=9% Similarity=0.043 Sum_probs=103.0
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 006743 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (633)
Q Consensus 37 ~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~ 115 (633)
...+..+.++.+ +...+.++.-++|.|+.+...+...-. .-.+..+++..+ |++..++..|.-+.++|+.+...
T Consensus 86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCC
Confidence 345556677644 677778888899999987764432211 222455666665 89999999777788899887543
Q ss_pred eeEe---e-CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCC
Q 006743 116 SSCI---T-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAE 191 (633)
Q Consensus 116 v~~i---~-h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~ 191 (633)
-... . .......++.+ |++-..+..|+-+.|-|+.+...|+.+-. ..-...+.++..+++.-+++.. +.+
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~-~n~g~g~~sv~vsdnr~y~vvy---~eg 234 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGS-YNTGPGTYSVSVSDNRAYLVVY---DEG 234 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEE-EecCCceEEEEecCCeeEEEEc---ccc
Confidence 3332 2 22334566666 77888888999999999998766644332 2333478888888876666654 234
Q ss_pred eEEEEeeCCCeEEccCCC
Q 006743 192 TALLGGAVGDSILMPDPL 209 (633)
Q Consensus 192 ~lLlSgs~Dg~IkIWDlr 209 (633)
.+++-.+......+++.+
T Consensus 235 vlivd~s~~ssp~~~gsy 252 (370)
T COG5276 235 VLIVDVSGPSSPTVFGSY 252 (370)
T ss_pred eEEEecCCCCCceEeecc
Confidence 444444444444444443
No 386
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.29 E-value=2.7 Score=45.51 Aligned_cols=157 Identities=20% Similarity=0.272 Sum_probs=94.4
Q ss_pred CEEEEEECCCcEEEEECC-CCceeEEE---eCCCCC-cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-EEeccC
Q 006743 7 EHLASISLSGDLILHNLA-SGAKAAEL---KDPNEQ-VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-SWLKQH 80 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~-tgk~v~~~---~~~~~~-~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v-~~l~~H 80 (633)
+.+.+.|.||.+.-..+. .|+..... .....+ .+..-++...+. .++--+.+|.|+--|+....... ..+.--
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcccccCccccc
Confidence 457788899999988887 55544221 111222 222234444444 34446888999999987766221 111100
Q ss_pred ----------CCCeEEEEEcCCCCEEEEEeC---CC-------eEEEEeCCCCceeeEeeCCCCeEEEEEecCCC-EEEE
Q 006743 81 ----------SAPTAGISFSSDDKIIASVGL---DK-------KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDW-ILTA 139 (633)
Q Consensus 81 ----------~~~VtsLafSPdg~~LaSgS~---DG-------tVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~-~Lat 139 (633)
.+.-.-+++++..++|++--. ++ .|.+||+.+++.+..+..+..+.+|..+.+.+ .|++
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence 122344778775555554321 22 69999999999999998777898999999876 4434
Q ss_pred E-EcCCeEEEEECCCCCCceEEEeecC
Q 006743 140 G-TSNGRVVFYDIRGKPQPLTVLRACS 165 (633)
Q Consensus 140 G-s~DGsV~IWDlrs~~k~v~~l~~~~ 165 (633)
. ..++.|.+||..++ +.++.+...+
T Consensus 307 ~~~~~~~l~v~D~~tG-k~~~~~~~lG 332 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATG-KLVRSIEQLG 332 (342)
T ss_dssp EETTTTEEEEEETTT---EEEEE---S
T ss_pred EcCCCCeEEEEeCcCC-cEEeehhccC
Confidence 3 45799999999998 4555555433
No 387
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.28 E-value=6.5 Score=42.11 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=82.6
Q ss_pred ccCCCCEEEEE-ECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec--
Q 006743 2 YNCKDEHLASI-SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-- 78 (633)
Q Consensus 2 FSpdG~~LaSg-s~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-- 78 (633)
|.++...|+-+ -..+.|.-|+..+++... +.. ...+.++.....+. .|+++. .-+++++.+.... +..+.
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~--p~~~~~~~~~d~~g-~Lv~~~--~g~~~~~~~~~~~-~t~~~~~ 104 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRV-FPS--PGGFSSGALIDAGG-RLIACE--HGVRLLDPDTGGK-ITLLAEP 104 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEE-EEC--CCCcccceeecCCC-eEEEEc--cccEEEeccCCce-eEEeccc
Confidence 66677755444 356788888887664332 221 12223333333333 354443 3356666654442 11111
Q ss_pred --c-CCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEEEEcC
Q 006743 79 --Q-HSAPTAGISFSSDDKIIASVGL-----------DKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSN 143 (633)
Q Consensus 79 --~-H~~~VtsLafSPdg~~LaSgS~-----------DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~LatGs~D 143 (633)
+ -...-+.+...|+|.+.+.... -|.|+.+|. .+..+..+. +-..-+.|+|+||++.|......
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 1 1245577888899887665444 135666666 455555443 35667789999999888877654
Q ss_pred -CeEEEEECC
Q 006743 144 -GRVVFYDIR 152 (633)
Q Consensus 144 -GsV~IWDlr 152 (633)
+.|+-|++.
T Consensus 184 ~~~i~r~~~d 193 (307)
T COG3386 184 ANRIHRYDLD 193 (307)
T ss_pred CCeEEEEecC
Confidence 788888776
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.19 E-value=1.5 Score=46.32 Aligned_cols=115 Identities=12% Similarity=0.171 Sum_probs=73.9
Q ss_pred CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006743 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS 116 (633)
Q Consensus 38 ~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~-~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v 116 (633)
..++++.|+|+.+. |++..+...-.||=...+.. +..+. ..-.....|.|..++++.++--.++.+.++.+.....+
T Consensus 86 ~nvS~LTynp~~rt-LFav~n~p~~iVElt~~Gdl-irtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 86 ANVSSLTYNPDTRT-LFAVTNKPAAIVELTKEGDL-IRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccceeeCCCcce-EEEecCCCceEEEEecCCce-EEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 34899999999985 55555545544554333442 23221 11233456778777777777777888888776544221
Q ss_pred e-----E--e---eC-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743 117 S-----C--I---TY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 117 ~-----~--i---~h-~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~ 154 (633)
. . + .+ ......++|+|..+.|+.+-+..-+.||.....
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence 1 1 1 12 567889999999999988888777777776644
No 389
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.11 E-value=0.16 Score=60.99 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=60.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCce--eeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC
Q 006743 92 DDKIIASVGLDKKLYTYDPGSRRP--SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA 169 (633)
Q Consensus 92 dg~~LaSgS~DGtVrIWDlrtgk~--v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~ 169 (633)
.+-.++.|+..|.|-..|....-. ..-....++|++++|+.+|..++.|-.+|.|.+||+..+ ++++.+.. |..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e--~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITE--HGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeee--cCCc
Confidence 456788888888898888876422 122235789999999999999999999999999999987 56677763 4444
Q ss_pred eeEEEE
Q 006743 170 VSSLCW 175 (633)
Q Consensus 170 VtsLaf 175 (633)
++++-+
T Consensus 175 ~t~vi~ 180 (1206)
T KOG2079|consen 175 VTGVIF 180 (1206)
T ss_pred cceEEE
Confidence 444443
No 390
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.01 E-value=1.2 Score=48.24 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=80.4
Q ss_pred ccCCCCEEEEE--ECCC---cEEEEECCCCceeEEEeCCCC---CcEEEEEEc-cCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743 2 YNCKDEHLASI--SLSG---DLILHNLASGAKAAELKDPNE---QVLRVLDYS-RNSRHLLVTAGDDGTLHLWDTTGRSP 72 (633)
Q Consensus 2 FSpdG~~LaSg--s~DG---~I~IWDl~tgk~v~~~~~~~~---~~VssLafS-pdg~~lLaSGs~DGtI~IWDl~t~~~ 72 (633)
|.++++.|+.. ..+. .+.++|..+++....+..... .....+.|. +++..+|.....||.-+||-+.....
T Consensus 191 W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~ 270 (353)
T PF00930_consen 191 WSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG 270 (353)
T ss_dssp EEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred ecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence 66777744433 2222 366778777654333322111 122234554 77777888888999876666543333
Q ss_pred eeEEeccCCCCeEE-EEEcCCCCEE-EEEeCCC----eEEEEeCC-CCceeeEeeCCCCe-EEEEEecCCCEEEEEEc
Q 006743 73 KVSWLKQHSAPTAG-ISFSSDDKII-ASVGLDK----KLYTYDPG-SRRPSSCITYEAPF-SSLAFIDDDWILTAGTS 142 (633)
Q Consensus 73 ~v~~l~~H~~~Vts-LafSPdg~~L-aSgS~DG----tVrIWDlr-tgk~v~~i~h~~~I-tsLafSPdG~~LatGs~ 142 (633)
....+....-.|.. +.|+++++.| +++..++ .|+..++. .+.. ..+...... ..+.|+|++++++..+.
T Consensus 271 ~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 271 KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEEEc
Confidence 35567777777855 6778866554 4555433 67777888 4444 444333333 59999999998875543
No 391
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.00 E-value=3.7 Score=49.55 Aligned_cols=164 Identities=7% Similarity=0.080 Sum_probs=103.5
Q ss_pred cEEEEECCCCceeEEEeCCCCCc---EEEEEEccCCCeEEEEEe----------CCCeEEEEECCCCCceeEEecc--CC
Q 006743 17 DLILHNLASGAKAAELKDPNEQV---LRVLDYSRNSRHLLVTAG----------DDGTLHLWDTTGRSPKVSWLKQ--HS 81 (633)
Q Consensus 17 ~I~IWDl~tgk~v~~~~~~~~~~---VssLafSpdg~~lLaSGs----------~DGtI~IWDl~t~~~~v~~l~~--H~ 81 (633)
.++++|.++-+.+...+-...+. +..+.|..|.+.+++.|. ..|.|.||...... .++.+.. -.
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-SLELVAETVVK 829 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-ceeeeeeeeec
Confidence 36677776665554433222222 223457777555677664 34778888876622 1222222 23
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~ 160 (633)
+.|.++..- +|+++|.- ...|++|+..+++.++.- .+..++..+...-.|..|++|.--+.|.+...+..+..+..
T Consensus 830 Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 830 GAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred cceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence 455555432 57766544 457999999888655444 67888999999999999999999898888766655433444
Q ss_pred EeecCCCCCeeEEEEccCCCeEEE
Q 006743 161 LRACSSSEAVSSLCWQRAKPVFID 184 (633)
Q Consensus 161 l~~~~H~~~VtsLafsPdg~~Las 184 (633)
+....+..+.+++.+-.+..++.+
T Consensus 907 vArD~~p~Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDTYLGA 930 (1096)
T ss_pred eehhhCccceeeEEEecCceEEee
Confidence 544567788888887655444443
No 392
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.99 E-value=12 Score=45.05 Aligned_cols=111 Identities=11% Similarity=0.038 Sum_probs=70.6
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCC-------cEEEEEEcc----------------CCCeEEEEEeCCCeE
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQ-------VLRVLDYSR----------------NSRHLLVTAGDDGTL 62 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~-------~VssLafSp----------------dg~~lLaSGs~DGtI 62 (633)
+..|+.++.++.|+-.|..+|+.+-++...... .++.+.+.. ++. .++.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~-rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR-RIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC-EEEEecCCCeE
Confidence 567888888999999999999988776532211 122233321 222 57788889999
Q ss_pred EEEECCCCCceeEEeccCCCCe-------------EEEEEcC--CCCEEEEEeC----------CCeEEEEeCCCCceee
Q 006743 63 HLWDTTGRSPKVSWLKQHSAPT-------------AGISFSS--DDKIIASVGL----------DKKLYTYDPGSRRPSS 117 (633)
Q Consensus 63 ~IWDl~t~~~~v~~l~~H~~~V-------------tsLafSP--dg~~LaSgS~----------DGtVrIWDlrtgk~v~ 117 (633)
.-.|.++++.. .-.+.++.| ..+.-.| .+..+++|+. +|.|+-+|.++|+.+-
T Consensus 273 iALDA~TGk~~--W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 273 IALDADTGKLC--EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEEECCCCCEE--EEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999888742 211222221 1112223 3456666643 6889999999999876
Q ss_pred Ee
Q 006743 118 CI 119 (633)
Q Consensus 118 ~i 119 (633)
.+
T Consensus 351 ~~ 352 (764)
T TIGR03074 351 AW 352 (764)
T ss_pred EE
Confidence 55
No 393
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.94 E-value=3.6 Score=45.93 Aligned_cols=194 Identities=10% Similarity=0.054 Sum_probs=89.4
Q ss_pred CCCEEEEEE-CCCcEEEEECCCC----ceeEEEeC---CC---CCcEEEEEEccCCCeEEEEEe--C----CCeEEEEEC
Q 006743 5 KDEHLASIS-LSGDLILHNLASG----AKAAELKD---PN---EQVLRVLDYSRNSRHLLVTAG--D----DGTLHLWDT 67 (633)
Q Consensus 5 dG~~LaSgs-~DG~I~IWDl~tg----k~v~~~~~---~~---~~~VssLafSpdg~~lLaSGs--~----DGtI~IWDl 67 (633)
+.++|++.+ ..+.|+|+|+.+. +..+.+.. .. -..-..+...|+|+ +++++- . -|-+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence 456777776 6789999999742 23333331 00 01122344567887 666642 2 245888888
Q ss_pred CCCCceeEEecc--CCCCeEEEEEcCCCCEEEEEeC--------------------CCeEEEEeCCCCceeeEeeCC---
Q 006743 68 TGRSPKVSWLKQ--HSAPTAGISFSSDDKIIASVGL--------------------DKKLYTYDPGSRRPSSCITYE--- 122 (633)
Q Consensus 68 ~t~~~~v~~l~~--H~~~VtsLafSPdg~~LaSgS~--------------------DGtVrIWDlrtgk~v~~i~h~--- 122 (633)
++.+..-.+-.. ....-+++-|.|..+.+++... ...|.+||+.+.+.++.+...
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 876643333222 2334578888998899988653 348999999999999998643
Q ss_pred CCeEEEEEecC--CCEEEEE-EcCCeEEEEEC-CCCCC-ceEEEeecC--C---------------CCCeeEEEEccCCC
Q 006743 123 APFSSLAFIDD--DWILTAG-TSNGRVVFYDI-RGKPQ-PLTVLRACS--S---------------SEAVSSLCWQRAKP 180 (633)
Q Consensus 123 ~~ItsLafSPd--G~~LatG-s~DGsV~IWDl-rs~~k-~v~~l~~~~--H---------------~~~VtsLafsPdg~ 180 (633)
.....+.|..+ ..+=++| .-...|..|-- ..+.- ..+++.... . ..-|+.|..+.|
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD-- 322 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD-- 322 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT--
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC--
Confidence 23556776654 3333333 23444544433 32210 111111111 0 233677777765
Q ss_pred eEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 181 VFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 181 ~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
|..+++++-.+|.|+.||+..
T Consensus 323 ---------DrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 323 ---------DRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp ---------S-EEEEEETTTTEEEEEE-SS
T ss_pred ---------CCEEEEEcccCCcEEEEecCC
Confidence 444456666799999999964
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.88 E-value=1.6 Score=51.07 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=64.9
Q ss_pred EEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEee--CCCCeEEEEEe--cCCCEEEEEEcCCeEEEEECC-----CCC-
Q 006743 87 ISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCIT--YEAPFSSLAFI--DDDWILTAGTSNGRVVFYDIR-----GKP- 155 (633)
Q Consensus 87 LafSPdg~~LaSgS~-DGtVrIWDlrtgk~v~~i~--h~~~ItsLafS--PdG~~LatGs~DGsV~IWDlr-----s~~- 155 (633)
+.-+.-++ ++.... ...+.|||.+.+....... ..+.|.++.|. |+|..+++.+....|.+|.-. +..
T Consensus 35 i~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 35 ISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred EeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 33333333 444444 4489999999887655443 48899999997 488999999999999998542 111
Q ss_pred --CceEEEeecCCC-CCeeEEEEccCCCeEEEe
Q 006743 156 --QPLTVLRACSSS-EAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 156 --k~v~~l~~~~H~-~~VtsLafsPdg~~Las~ 185 (633)
.+++.+....|+ .+|.+..|-++|..++.+
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s 146 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS 146 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEe
Confidence 234444433444 678888888876665544
No 395
>PHA03098 kelch-like protein; Provisional
Probab=93.69 E-value=2.1 Score=48.69 Aligned_cols=141 Identities=11% Similarity=0.024 Sum_probs=70.2
Q ss_pred CCEEEEEECCC------cEEEEECCCCceeEEEeC-C-CCCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCCc
Q 006743 6 DEHLASISLSG------DLILHNLASGAKAAELKD-P-NEQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRSP 72 (633)
Q Consensus 6 G~~LaSgs~DG------~I~IWDl~tgk~v~~~~~-~-~~~~VssLafSpdg~~lLaSGs~D-----GtI~IWDl~t~~~ 72 (633)
+..++.||.++ .+..||..+++... +.. . .......+. -++ .+++.|+.+ ..+..||..+...
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNN-RIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECC-EEEEEeCCCCCEecceEEEEcCCCCce
Confidence 44555665442 57788877665422 211 1 111112222 234 377888765 3577888876552
Q ss_pred eeEEecc--CCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeeEeeC--CCCeEEEEEecCCCEEEEEEc
Q 006743 73 KVSWLKQ--HSAPTAGISFSSDDKIIASVGLD------KKLYTYDPGSRRPSSCITY--EAPFSSLAFIDDDWILTAGTS 142 (633)
Q Consensus 73 ~v~~l~~--H~~~VtsLafSPdg~~LaSgS~D------GtVrIWDlrtgk~v~~i~h--~~~ItsLafSPdG~~LatGs~ 142 (633)
. .... +...-.+++. -++++++.|+.+ +.+..||+.+++-...... .....+++ ..++.+.+.|+.
T Consensus 371 ~--~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~ 446 (534)
T PHA03098 371 R--EEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGI 446 (534)
T ss_pred e--eCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCc
Confidence 1 1111 1111112222 256777777732 3688999987654332211 11111222 235666677764
Q ss_pred C--------CeEEEEECCCC
Q 006743 143 N--------GRVVFYDIRGK 154 (633)
Q Consensus 143 D--------GsV~IWDlrs~ 154 (633)
+ ..+.+||..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred cCCCCCcccceEEEecCCCC
Confidence 3 23888998875
No 396
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.54 E-value=0.059 Score=63.41 Aligned_cols=105 Identities=17% Similarity=0.308 Sum_probs=64.7
Q ss_pred CcEEEEECC--CCceeEEE----eCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 006743 16 GDLILHNLA--SGAKAAEL----KDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI 87 (633)
Q Consensus 16 G~I~IWDl~--tgk~v~~~----~~~~~~~VssLafSpd--g~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsL 87 (633)
|.+.|||+. .|+....+ ....+..+.-|.|+|- +.-+++.+-.++.|++..+.... ...+++|...+.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH--HHHHHhcCCCcccH
Confidence 567889875 45433322 2233444455667653 22367778888898887776554 34567798888888
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 88 SFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 88 afSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
+|-..|-+++.+ ++|||..++..+.||.|++|.+.
T Consensus 231 a~~~~g~~~l~~------------------------------lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 231 AFFAEGVLKLAS------------------------------LSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred HHHhhchhhhee------------------------------eCCCCcEEEEeecCCccceeeee
Confidence 776544332221 56777777777777776666543
No 397
>PRK10115 protease 2; Provisional
Probab=93.45 E-value=21 Score=42.45 Aligned_cols=106 Identities=9% Similarity=0.000 Sum_probs=63.2
Q ss_pred ccCCCCEEEEEEC-C----CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCC
Q 006743 2 YNCKDEHLASISL-S----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRS 71 (633)
Q Consensus 2 FSpdG~~LaSgs~-D----G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D-----GtI~IWDl~t~~ 71 (633)
|+|||++|+.+-. + ..|++.|+.+++.+..... ..-..++|.++++.++++...+ ..|+.|++.+..
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~---~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD---NVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc---CcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 6899998886533 2 2588999988864332211 1113489999998666665533 368888887762
Q ss_pred c-eeEEeccCCCCeEEEEEcC-CCCEEEEEeC---CCeEEEEeC
Q 006743 72 P-KVSWLKQHSAPTAGISFSS-DDKIIASVGL---DKKLYTYDP 110 (633)
Q Consensus 72 ~-~v~~l~~H~~~VtsLafSP-dg~~LaSgS~---DGtVrIWDl 110 (633)
. ....+........-..+.. ++++++..+. ++.+.+|+.
T Consensus 211 ~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 211 SQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred hHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 1 1223333333333233334 7777665543 347888885
No 398
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.44 E-value=1.7 Score=49.87 Aligned_cols=138 Identities=12% Similarity=0.161 Sum_probs=86.6
Q ss_pred cEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEeCC-
Q 006743 39 VLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD----DKIIASVGLDKKLYTYDPG- 111 (633)
Q Consensus 39 ~VssLafSpdg~~lLaSGs--~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPd----g~~LaSgS~DGtVrIWDlr- 111 (633)
++..++|. ||+.++.+.- .+|.+++=|- ...+.-..|+++.|.|- ...++..-..+.|.+|-+.
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGds--------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS--------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCccccCCc--------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 45667886 4554555542 2333322111 12233355999999983 3356777778889999885
Q ss_pred ----CCceeeEe--eC----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCe
Q 006743 112 ----SRRPSSCI--TY----EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPV 181 (633)
Q Consensus 112 ----tgk~v~~i--~h----~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~ 181 (633)
.++.+... .. .--...+.|+|...+|++-..+..=.+++++.....++.- ....+-|.|.||.+||+.
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD--i~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD--IKTSGLIHCACWTKDGQR 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe--ccCCceEEEEEecCcCCE
Confidence 22322211 11 1124568899999999988877776778887654433322 256788999999999998
Q ss_pred EEEecc
Q 006743 182 FIDETT 187 (633)
Q Consensus 182 Las~s~ 187 (633)
|+.+-.
T Consensus 170 LVVAvG 175 (671)
T PF15390_consen 170 LVVAVG 175 (671)
T ss_pred EEEEeC
Confidence 876633
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.27 E-value=2 Score=44.19 Aligned_cols=94 Identities=11% Similarity=0.141 Sum_probs=65.9
Q ss_pred cEEEEEEccCCCeEEEEEeCCCeEEEEE--CCCCCce----eEEecc----CCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 006743 39 VLRVLDYSRNSRHLLVTAGDDGTLHLWD--TTGRSPK----VSWLKQ----HSAPTAGISFSSDDKIIASVGLDKKLYTY 108 (633)
Q Consensus 39 ~VssLafSpdg~~lLaSGs~DGtI~IWD--l~t~~~~----v~~l~~----H~~~VtsLafSPdg~~LaSgS~DGtVrIW 108 (633)
.-+.++|..+...+.++-+.+-.|.-|| +.++... +..++. ..-.--.+++..+|++++++-..++|...
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 3346889988877777778888898888 4443311 222221 11122345566689999999899999999
Q ss_pred eCCCCceeeEee-CCCCeEEEEEec
Q 006743 109 DPGSRRPSSCIT-YEAPFSSLAFID 132 (633)
Q Consensus 109 Dlrtgk~v~~i~-h~~~ItsLafSP 132 (633)
|+.+|+.+..+. ....|+|+||--
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecC
Confidence 999999998885 467799999964
No 400
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.08 E-value=4.4 Score=42.89 Aligned_cols=152 Identities=15% Similarity=0.156 Sum_probs=94.4
Q ss_pred CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCCceeEE-------eccCCCCeEEEEEcCCCCEE
Q 006743 25 SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-LHLWDTTGRSPKVSW-------LKQHSAPTAGISFSSDDKII 96 (633)
Q Consensus 25 tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGt-I~IWDl~t~~~~v~~-------l~~H~~~VtsLafSPdg~~L 96 (633)
.|+++..+.- ......|+|+|.-..-++.+-.-|+ ..++|..+...++.. +.+|. +|+|||.+|
T Consensus 57 aGk~v~~~~l--paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~L 128 (366)
T COG3490 57 AGKIVFATAL--PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLL 128 (366)
T ss_pred CCceeeeeec--ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEE
Confidence 5666555432 2334457888876656666666665 568888776644322 33442 589999998
Q ss_pred EEEeCC-----CeEEEEeCCCC-ceeeEe-eCCCCeEEEEEecCCCEEEEEEc------C-C-----------eEEEEEC
Q 006743 97 ASVGLD-----KKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGTS------N-G-----------RVVFYDI 151 (633)
Q Consensus 97 aSgS~D-----GtVrIWDlrtg-k~v~~i-~h~~~ItsLafSPdG~~LatGs~------D-G-----------sV~IWDl 151 (633)
+..-+| |.|-|||.+.+ +.+-.+ .|.-....+.|.+||+.|+.+.. | | .+.+.|.
T Consensus 129 YATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~ 208 (366)
T COG3490 129 YATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDA 208 (366)
T ss_pred EeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEec
Confidence 876544 58999999853 223333 46667788999999999987754 1 1 2344444
Q ss_pred CCCCCceEEEeec--CCCCCeeEEEEccCCCeEEEe
Q 006743 152 RGKPQPLTVLRAC--SSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 152 rs~~k~v~~l~~~--~H~~~VtsLafsPdg~~Las~ 185 (633)
.++. .+...... .+.-.|..++..++|..++.|
T Consensus 209 atG~-liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 209 ATGN-LIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred cccc-hhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 4431 11211111 345668888888888777655
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.02 E-value=9.3 Score=40.64 Aligned_cols=153 Identities=12% Similarity=0.182 Sum_probs=101.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee------
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV------ 74 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v------ 74 (633)
+|+|+.+.|++..+...-.|+=..+|+.+..+.-..-.-...|.|..++. +.++--.++.++++.+.......
T Consensus 92 Tynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~t~~~~~~~~~ 170 (316)
T COG3204 92 TYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDADTTVISAKVQK 170 (316)
T ss_pred eeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCCccEEeccceE
Confidence 58999999998888888777766788888876532212223467777765 55555568888888775443111
Q ss_pred ---EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eee--Ee-e-------CCCCeEEEEEec-CCCEEEE
Q 006743 75 ---SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSS--CI-T-------YEAPFSSLAFID-DDWILTA 139 (633)
Q Consensus 75 ---~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk-~v~--~i-~-------h~~~ItsLafSP-dG~~Lat 139 (633)
......+..-..++|.|....|+.+-+.+-+.||.+.... ... .. . .-..|.++.|++ .+..++.
T Consensus 171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVL 250 (316)
T COG3204 171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVL 250 (316)
T ss_pred EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEE
Confidence 1111225667899999987888888777767776654322 111 11 1 123467788887 4677788
Q ss_pred EEcCCeEEEEECCCC
Q 006743 140 GTSNGRVVFYDIRGK 154 (633)
Q Consensus 140 Gs~DGsV~IWDlrs~ 154 (633)
+.+++.|.-.|....
T Consensus 251 S~ESr~l~Evd~~G~ 265 (316)
T COG3204 251 SDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCceEEEEecCCC
Confidence 888898888888765
No 402
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.00 E-value=11 Score=43.30 Aligned_cols=141 Identities=13% Similarity=0.179 Sum_probs=84.3
Q ss_pred cEEEEECCCCceeEEEeCCCCC--------cEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCCceeE-------Ee--
Q 006743 17 DLILHNLASGAKAAELKDPNEQ--------VLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRSPKVS-------WL-- 77 (633)
Q Consensus 17 ~I~IWDl~tgk~v~~~~~~~~~--------~VssLafSpdg~--~lLaSGs~DGtI~IWDl~t~~~~v~-------~l-- 77 (633)
.|.-.|+++|+..-.++..+.+ ...-+.+..+|+ ..++.+.++|.+++.|-++++.+.. .+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5777899999988777642211 111123334554 5788999999999999988874210 01
Q ss_pred --ccCC-CCe----------------------------EEEEEcCCCCEEEEEeCC------------------------
Q 006743 78 --KQHS-APT----------------------------AGISFSSDDKIIASVGLD------------------------ 102 (633)
Q Consensus 78 --~~H~-~~V----------------------------tsLafSPdg~~LaSgS~D------------------------ 102 (633)
.... .++ ..++++|+..+++....+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 0000 000 114566655555443332
Q ss_pred ---------CeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 006743 103 ---------KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (633)
Q Consensus 103 ---------GtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~ 157 (633)
+.|.-+|+.+++.+-......+...-.+.-.+..++.+..||.++.+|.++++..
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEe
Confidence 3577788888877765543332211112224567778888999999999999543
No 403
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.91 E-value=2.5 Score=49.90 Aligned_cols=149 Identities=9% Similarity=0.104 Sum_probs=93.2
Q ss_pred EEEEEeCCCeEEEEECCCCCcee-----EEe----------------ccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q 006743 52 LLVTAGDDGTLHLWDTTGRSPKV-----SWL----------------KQHSAPTAGISFSS--DDKIIASVGLDKKLYTY 108 (633)
Q Consensus 52 lLaSGs~DGtI~IWDl~t~~~~v-----~~l----------------~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIW 108 (633)
+++++. .+.|+||+.+...... ..+ ......|+.|.... +...|+.|.+||.|.+|
T Consensus 51 ~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Y 129 (717)
T PF08728_consen 51 LLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLAY 129 (717)
T ss_pred EEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEEE
Confidence 566644 6899999985432110 000 00123466665554 56789999999999999
Q ss_pred eCCC-------C-------------ceeeEeeCCCCeEEEEEe--cCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC
Q 006743 109 DPGS-------R-------------RPSSCITYEAPFSSLAFI--DDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS 166 (633)
Q Consensus 109 Dlrt-------g-------------k~v~~i~h~~~ItsLafS--PdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H 166 (633)
.+++ . ++...+.....+++++++ ...++||+++....|.||-...............|
T Consensus 130 yt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~ 209 (717)
T PF08728_consen 130 YTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQH 209 (717)
T ss_pred EHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccccc
Confidence 6521 0 122333456789999998 77888999888888888765542111111112346
Q ss_pred CCCeeEEEEccCCCeEEEeccCCCC-eEEEEeeCCCeEEccCC
Q 006743 167 SEAVSSLCWQRAKPVFIDETTCKAE-TALLGGAVGDSILMPDP 208 (633)
Q Consensus 167 ~~~VtsLafsPdg~~Las~s~~sd~-~lLlSgs~Dg~IkIWDl 208 (633)
...|-+|+|-++. ....+ ..+++++-.|.+.+|++
T Consensus 210 ~hNIP~VSFl~~~-------~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 210 SHNIPNVSFLDDD-------LDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccCCCeeEeecCC-------CCCccceEEEEEeccCcEEEEEE
Confidence 7789999998742 11112 36777788898888887
No 404
>PHA02713 hypothetical protein; Provisional
Probab=92.76 E-value=1.2 Score=51.34 Aligned_cols=144 Identities=8% Similarity=0.028 Sum_probs=75.5
Q ss_pred CCCEEEEEECCC-----cEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCC-----------------
Q 006743 5 KDEHLASISLSG-----DLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDG----------------- 60 (633)
Q Consensus 5 dG~~LaSgs~DG-----~I~IWDl~tgk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DG----------------- 60 (633)
+|+..+.||.++ .+..||..+.+-.. .+... ......+.+ ++. +++.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~~~--~g~-IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA-LSSYGMCVL--DQY-IYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc-cccccEEEE--CCE-EEEEeCCCcccccccccccccccccc
Confidence 466667777654 47889987654322 11111 111111222 444 777777653
Q ss_pred ------eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCC-CceeeE--eeCCCCe
Q 006743 61 ------TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD------KKLYTYDPGS-RRPSSC--ITYEAPF 125 (633)
Q Consensus 61 ------tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D------GtVrIWDlrt-gk~v~~--i~h~~~I 125 (633)
.|..||..+.+.....-..+...-.+++. -++++.+.|+.+ ..|..||..+ .+-... +...-..
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 47788887665321100001111112222 257777777754 2467899987 444322 2211112
Q ss_pred EEEEEecCCCEEEEEEcCC--eEEEEECCCC
Q 006743 126 SSLAFIDDDWILTAGTSNG--RVVFYDIRGK 154 (633)
Q Consensus 126 tsLafSPdG~~LatGs~DG--sV~IWDlrs~ 154 (633)
.+++.. +|++.++|+.|| .|..||+.+.
T Consensus 506 ~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 506 LHTILH-DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ceeEEE-CCEEEEEeeecceeehhhcCcccc
Confidence 222222 688888999888 7888888876
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.70 E-value=6.4 Score=42.84 Aligned_cols=138 Identities=15% Similarity=0.217 Sum_probs=76.8
Q ss_pred EEEEEccCCCeEEEEEe-----------CCC-eEEEEECCCC--C-ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 006743 41 RVLDYSRNSRHLLVTAG-----------DDG-TLHLWDTTGR--S-PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKL 105 (633)
Q Consensus 41 ssLafSpdg~~lLaSGs-----------~DG-tI~IWDl~t~--~-~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtV 105 (633)
..|+|.++|+ ++++-. ..+ .|.+++-.+. + .....+.......+.+++.+++ |+++..+..+
T Consensus 17 ~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~ 93 (367)
T TIGR02604 17 IAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDIL 93 (367)
T ss_pred ceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEE
Confidence 4589999998 444432 223 6777765322 1 1223343444556889999888 4444555444
Q ss_pred EEEeCCCC-----ceeeEe---eC-----CCCeEEEEEecCCCEEEEEEcC-------------------CeEEEEECCC
Q 006743 106 YTYDPGSR-----RPSSCI---TY-----EAPFSSLAFIDDDWILTAGTSN-------------------GRVVFYDIRG 153 (633)
Q Consensus 106 rIWDlrtg-----k~v~~i---~h-----~~~ItsLafSPdG~~LatGs~D-------------------GsV~IWDlrs 153 (633)
++.|.... +....+ .. ......++|.|||++.++-+.. |.|.-+|..+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 45465321 222222 11 2447789999999876654421 4466666655
Q ss_pred CCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 154 ~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
.. +.++. .+ -.....++|+++|+.+++.
T Consensus 174 ~~--~e~~a-~G-~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 174 GK--LRVVA-HG-FQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred Ce--EEEEe-cC-cCCCccceECCCCCEEEEc
Confidence 42 23332 12 2345688999987776654
No 406
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.63 E-value=17 Score=39.00 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=70.4
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCc
Q 006743 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP-GSRR 114 (633)
Q Consensus 36 ~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl-rtgk 114 (633)
....+..+.-+++++ +++++..-....-||--......+ -+.-...|..|.|.|++.+.+.+ ..|.|+.=|. ....
T Consensus 143 ~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w~~~-~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTWQPH-NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEE-E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CcceeEeEEECCCCc-EEEEECcccEEEEecCCCccceEE-ccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 446677788889987 666665544555777643332222 23456889999999998776644 8888888872 2222
Q ss_pred eeeE----e-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee-cCCCCCeeEEEEccCCCeEEE
Q 006743 115 PSSC----I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA-CSSSEAVSSLCWQRAKPVFID 184 (633)
Q Consensus 115 ~v~~----i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~-~~H~~~VtsLafsPdg~~Las 184 (633)
.... + .....+..++|.+++...++|+. |.+ +.....++ ..+.... ..-...++.|.|..+.+-++.
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGk-tW~~~~~~~~~~~n~~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGK-TWQKDRVGENVPSNLYRIVFVNPDKGFVL 292 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTS-S-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCc-cceECccccCCCCceEEEEEcCCCceEEE
Confidence 1111 1 13344899999998777665554 533 33444443 2222221 123456888888765444433
No 407
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.29 E-value=2.9 Score=49.10 Aligned_cols=49 Identities=20% Similarity=0.453 Sum_probs=35.2
Q ss_pred EEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006743 18 LILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (633)
Q Consensus 18 I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~ 70 (633)
|+||+. +|..+..+.-.|...|. +.|+.+.. |++...||+++||++-+.
T Consensus 66 I~If~~-sG~lL~~~~w~~~~lI~-mgWs~~ee--LI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 66 IRIFNI-SGQLLGRILWKHGELIG-MGWSDDEE--LICVQKDGTVHVYGLLGE 114 (829)
T ss_pred EEEEec-cccchHHHHhcCCCeee-ecccCCce--EEEEeccceEEEeecchh
Confidence 667775 56666555444555554 89998865 778899999999998543
No 408
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.20 E-value=3.3 Score=45.10 Aligned_cols=137 Identities=12% Similarity=0.134 Sum_probs=72.7
Q ss_pred CccCCCCEEEEEE-----------CCC-cEEEEECCC--Cc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEE
Q 006743 1 MYNCKDEHLASIS-----------LSG-DLILHNLAS--GA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL 64 (633)
Q Consensus 1 AFSpdG~~LaSgs-----------~DG-~I~IWDl~t--gk--~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~I 64 (633)
+|.++|+++++-. ..+ .|.+++-.+ |+ ....+.. .......|++.+++ ++++ ......++
T Consensus 20 a~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~-~~~~i~~~ 95 (367)
T TIGR02604 20 CFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVA-TPPDILFL 95 (367)
T ss_pred eECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEe-CCCeEEEE
Confidence 4778888766542 223 677776443 33 2233332 22334668888776 4443 44433334
Q ss_pred EECCCC-----C--ceeEEecc----CCCCeEEEEEcCCCCEEEEEeCC-------------------CeEEEEeCCCCc
Q 006743 65 WDTTGR-----S--PKVSWLKQ----HSAPTAGISFSSDDKIIASVGLD-------------------KKLYTYDPGSRR 114 (633)
Q Consensus 65 WDl~t~-----~--~~v~~l~~----H~~~VtsLafSPdg~~LaSgS~D-------------------GtVrIWDlrtgk 114 (633)
.|.... + ..+..+.. +......++|.|||.+.++.+.. +.|..+|..+++
T Consensus 96 ~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~ 175 (367)
T TIGR02604 96 RDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK 175 (367)
T ss_pred eCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe
Confidence 455321 1 11111221 23457889999999877765521 345556665544
Q ss_pred eeeEeeCCCCeEEEEEecCCCEEEEEE
Q 006743 115 PSSCITYEAPFSSLAFIDDDWILTAGT 141 (633)
Q Consensus 115 ~v~~i~h~~~ItsLafSPdG~~LatGs 141 (633)
.......-.....++|+++|+++++-.
T Consensus 176 ~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 176 LRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEEEecCcCCCccceECCCCCEEEEcc
Confidence 322222223356788888887766544
No 409
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.17 E-value=0.018 Score=63.81 Aligned_cols=131 Identities=16% Similarity=0.247 Sum_probs=95.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec---
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--- 78 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~--- 78 (633)
|.+.+..++.++.+..|..||- .++...+... .+.. -+++|..+++..++.+-..+.+++||+..... ..+.
T Consensus 42 w~~e~~nlavaca~tiv~~YD~-agq~~le~n~-tg~a-ldm~wDkegdvlavlAek~~piylwd~n~eyt--qqLE~gg 116 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDK-AGQVILELNP-TGKA-LDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT--QQLESGG 116 (615)
T ss_pred EecCCCceehhhhhhHHHhhhh-hcceecccCC-chhH-hhhhhccccchhhhhhhcCCCeeechhhhhhH--HHHhccC
Confidence 6677777888888989999995 3444333321 2233 34889988887788888899999999975542 1222
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEecCCCEEEE
Q 006743 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTA 139 (633)
Q Consensus 79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~ItsLafSPdG~~Lat 139 (633)
.|.... +.|++....++.+...+.+.||+.++.+.+...+ |...+.+++|.+.+..+..
T Consensus 117 ~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 117 TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence 122222 6789888888999999999999999887777776 8899999999987655443
No 410
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.91 E-value=0.48 Score=36.53 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=29.2
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 121 h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
....|.+++|+|....||.+..+|.|.+|.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 45679999999999999999999999999984
No 411
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.90 E-value=8 Score=44.59 Aligned_cols=117 Identities=9% Similarity=0.074 Sum_probs=75.2
Q ss_pred CCcEEEEEEccCC---CeEEEEEeCCCeEEEEECC-----CCCceeEEeccCCC----CeEEEEEcCCCCEEEEEeCCCe
Q 006743 37 EQVLRVLDYSRNS---RHLLVTAGDDGTLHLWDTT-----GRSPKVSWLKQHSA----PTAGISFSSDDKIIASVGLDKK 104 (633)
Q Consensus 37 ~~~VssLafSpdg---~~lLaSGs~DGtI~IWDl~-----t~~~~v~~l~~H~~----~VtsLafSPdg~~LaSgS~DGt 104 (633)
.+-|..+.|.|-+ .-.|.+.-..+.|.||.+. ..+..+........ --..+.|+|....|++-.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 3457889999863 1145566777899999984 22211111111111 2256789998888877766655
Q ss_pred EEEEeCCC--CceeeEeeCCCCeEEEEEecCCCEEEEEEcC-CeEEEEECCC
Q 006743 105 LYTYDPGS--RRPSSCITYEAPFSSLAFIDDDWILTAGTSN-GRVVFYDIRG 153 (633)
Q Consensus 105 VrIWDlrt--gk~v~~i~h~~~ItsLafSPdG~~LatGs~D-GsV~IWDlrs 153 (633)
-.+++++. .+...-+...+.|.|.||.+||..|+++-.. =.-+|||-..
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 55666653 3344445778899999999999888766443 3478898654
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.86 E-value=3 Score=49.69 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=57.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------Cce-e--eEe---------eCCCCeEEEEEecC---CCEE
Q 006743 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGS---------RRP-S--SCI---------TYEAPFSSLAFIDD---DWIL 137 (633)
Q Consensus 82 ~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt---------gk~-v--~~i---------~h~~~ItsLafSPd---G~~L 137 (633)
-.|..|.++|+|.+++..|..|.+.+.=.+. ++. + +.+ .....|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4688899999999999999877433322221 111 1 111 13456889999996 5899
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEe
Q 006743 138 TAGTSNGRVVFYDIRGKPQPLTVLR 162 (633)
Q Consensus 138 atGs~DGsV~IWDlrs~~k~v~~l~ 162 (633)
++=+.|+++++||+.....+..++.
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEEE
Confidence 9999999999999987666655554
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.80 E-value=4.7 Score=47.23 Aligned_cols=107 Identities=17% Similarity=0.302 Sum_probs=70.2
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCC-----C---
Q 006743 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPG-----S--- 112 (633)
Q Consensus 43 LafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlr-----t--- 112 (633)
+.-+.-+. ..+.-.....+.|||...............+.|.++.|.. +++.+++.|..+.|.+|--. .
T Consensus 35 i~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 35 ISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred EeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 33444443 3333334457999999877633332334578899999964 99999999999999998542 1
Q ss_pred -CceeeEe---eC-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 113 -RRPSSCI---TY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 113 -gk~v~~i---~h-~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
..++..+ .+ ..+|.+.+|.++|..++.++ +.++|+|-.
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 1233333 23 37899999999987665443 468887643
No 414
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.69 E-value=0.55 Score=36.18 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=29.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR 114 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk 114 (633)
....|.+++|+|...+||.+..||.|.+|.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3457999999999999999999999999998 444
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.44 E-value=5.2 Score=41.40 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=66.1
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEE-CCCCCCce
Q 006743 83 PTAGISFSSDDKIIASVG---LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYD-IRGKPQPL 158 (633)
Q Consensus 83 ~VtsLafSPdg~~LaSgS---~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWD-lrs~~k~v 158 (633)
.+...++++++..++... ....|+++..... .........+....|++++...+....+...+++. ........
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999999887776 3335666654432 22222344788889999988877777777777763 23322222
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEec
Q 006743 159 TVLRACSSSEAVSSLCWQRAKPVFIDET 186 (633)
Q Consensus 159 ~~l~~~~H~~~VtsLafsPdg~~Las~s 186 (633)
..+....-.+.|+.+.++|||..++...
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEE
Confidence 2222222223899999999998877553
No 416
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.20 E-value=15 Score=39.30 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=90.7
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCe------EEEEECCCCC---ce-----eEEeccCCC--------CeEEEEEcCCC
Q 006743 36 NEQVLRVLDYSRNSRHLLVTAGDDGT------LHLWDTTGRS---PK-----VSWLKQHSA--------PTAGISFSSDD 93 (633)
Q Consensus 36 ~~~~VssLafSpdg~~lLaSGs~DGt------I~IWDl~t~~---~~-----v~~l~~H~~--------~VtsLafSPdg 93 (633)
.-..++.|.+.+++. .+++.+++|. ++.+++.... .. ...+..-.+ ...+|++.+++
T Consensus 18 ~~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred ccCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 345678899986555 5777788888 7666664310 00 111222211 34578886688
Q ss_pred CEEEEEeCC------CeEEEEeCCCCceeeEe----------------eCCCCeEEEEEecCCCEEEEEEc-----CC--
Q 006743 94 KIIASVGLD------KKLYTYDPGSRRPSSCI----------------TYEAPFSSLAFIDDDWILTAGTS-----NG-- 144 (633)
Q Consensus 94 ~~LaSgS~D------GtVrIWDlrtgk~v~~i----------------~h~~~ItsLafSPdG~~LatGs~-----DG-- 144 (633)
.++++--.+ ..|+.+|.. ++....+ .....+.+|+++|+|+.|+++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888887777 789999976 5543332 13456889999999997776644 22
Q ss_pred ---------eEEEEECCCCCCceEEEeec-C------CCCCeeEEEEccCCCeEEEe
Q 006743 145 ---------RVVFYDIRGKPQPLTVLRAC-S------SSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 145 ---------sV~IWDlrs~~k~v~~l~~~-~------H~~~VtsLafsPdg~~Las~ 185 (633)
.|..||..+...+...+... . ....|..+.+-+++++++-.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 24445555422223332211 1 35678889999988887765
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.80 E-value=13 Score=41.77 Aligned_cols=137 Identities=16% Similarity=0.156 Sum_probs=89.0
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-
Q 006743 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI- 119 (633)
Q Consensus 43 LafSpdg~~lLaSGs~DGtI~IWDl~t~~--~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i- 119 (633)
+-|...++ .+.+-..|.+.=|-+.... .+........++|.++.|++|.+.|++--.|++|.+++....+.....
T Consensus 28 vFfDDaNk--qlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 28 VFFDDANK--QLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred eeeccCcc--eEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 44544444 3333445666777665433 223344455679999999999999999999999999998543332222
Q ss_pred ----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 120 ----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 120 ----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
.....|...+|... .-+|.....| |.+|.+...+..++..+ .|.-.|.-..|+++.+.++-+
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk--s~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK--SHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh--hcccCccEEEEccccceEeee
Confidence 13345889999866 5566665555 67776665544455555 577788888888876665443
No 418
>PHA03098 kelch-like protein; Provisional
Probab=90.74 E-value=6.3 Score=44.88 Aligned_cols=143 Identities=12% Similarity=0.060 Sum_probs=71.6
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCCce
Q 006743 5 KDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLWDTTGRSPK 73 (633)
Q Consensus 5 dG~~LaSgs~D-----G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D------GtI~IWDl~t~~~~ 73 (633)
+++.++.||.+ ..+..||..+++-...-.......-.+++. -++ .+++.|+.+ ..+.+||..+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 45566667755 347778877654322111011111111222 234 377777732 46889998765521
Q ss_pred eEEeccCC--CCeEEEEEcCCCCEEEEEeCCC--------eEEEEeCCCCceeeEe--eCC-CCeEEEEEecCCCEEEEE
Q 006743 74 VSWLKQHS--APTAGISFSSDDKIIASVGLDK--------KLYTYDPGSRRPSSCI--TYE-APFSSLAFIDDDWILTAG 140 (633)
Q Consensus 74 v~~l~~H~--~~VtsLafSPdg~~LaSgS~DG--------tVrIWDlrtgk~v~~i--~h~-~~ItsLafSPdG~~LatG 140 (633)
.+.... ..-.+++. -++..++.|+.+. .+.+||..+++-...- ... .....+.+ ++++++.|
T Consensus 420 --~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~G 494 (534)
T PHA03098 420 --KGSPLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVG 494 (534)
T ss_pred --ecCCCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEc
Confidence 111111 11112222 2566667776432 3889999876543322 111 11122222 66777777
Q ss_pred EcC-----CeEEEEECCCC
Q 006743 141 TSN-----GRVVFYDIRGK 154 (633)
Q Consensus 141 s~D-----GsV~IWDlrs~ 154 (633)
+.+ ..|.+||+.+.
T Consensus 495 G~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 495 GDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcCCcccceeEEEeCCCC
Confidence 754 46888988865
No 419
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.54 E-value=34 Score=38.40 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=90.7
Q ss_pred CCCEEEEEECCCcEEEEECCCCc-----eeEEEeCCCCCcEEEEEEcc---CCCeEEEEEeCCCeEEEEECCCCC-----
Q 006743 5 KDEHLASISLSGDLILHNLASGA-----KAAELKDPNEQVLRVLDYSR---NSRHLLVTAGDDGTLHLWDTTGRS----- 71 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk-----~v~~~~~~~~~~VssLafSp---dg~~lLaSGs~DGtI~IWDl~t~~----- 71 (633)
+...|++|+..|.++||+...+. .+.+.+ -+.+|-.|..-. ..+...++.-.-+.+.||.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 34589999999999999986433 222222 345666666542 222234444667889999883221
Q ss_pred ---ceeEEeccCC--CCeEEEEEcC----C-CCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEE
Q 006743 72 ---PKVSWLKQHS--APTAGISFSS----D-DKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT 141 (633)
Q Consensus 72 ---~~v~~l~~H~--~~VtsLafSP----d-g~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs 141 (633)
..+..+..|. .....+++-| . ..+|++=+.||.+.+|+-+.-.....+...--.-.+++.+.-..+++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEec
Confidence 2233444443 2334444433 2 4678888999999999977644444443322334467888888899999
Q ss_pred cCCeEEEEEC
Q 006743 142 SNGRVVFYDI 151 (633)
Q Consensus 142 ~DGsV~IWDl 151 (633)
.+..|..|..
T Consensus 194 ss~~l~~Yky 203 (418)
T PF14727_consen 194 SSWTLECYKY 203 (418)
T ss_pred CceeEEEecH
Confidence 9888888865
No 420
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.48 E-value=16 Score=38.77 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=46.8
Q ss_pred eEEEEEeC-----CCeEEEEECCCCCceeEEecc--CCCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCceeeEe
Q 006743 51 HLLVTAGD-----DGTLHLWDTTGRSPKVSWLKQ--HSAPTAGISFSSDDKIIASVGLDK----KLYTYDPGSRRPSSCI 119 (633)
Q Consensus 51 ~lLaSGs~-----DGtI~IWDl~t~~~~v~~l~~--H~~~VtsLafSPdg~~LaSgS~DG----tVrIWDlrtgk~v~~i 119 (633)
.+++.|+. ...+.+||..+.+.. .+.. ........+..-++++.+.|+.++ .+.+||+++.+-...-
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~--~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWF--ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCee--ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence 36677764 246888998776532 1211 111112222223577778887664 3568998876543222
Q ss_pred eC---CCCe----EEEEEecCCCEEEEEEcC
Q 006743 120 TY---EAPF----SSLAFIDDDWILTAGTSN 143 (633)
Q Consensus 120 ~h---~~~I----tsLafSPdG~~LatGs~D 143 (633)
.. ..+. .+.+...++++++.|+.+
T Consensus 203 ~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 203 DPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 11 1111 111122356778888766
No 421
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=90.46 E-value=3.9 Score=45.72 Aligned_cols=127 Identities=10% Similarity=0.024 Sum_probs=66.0
Q ss_pred CCcEEEEECCCCceeEEEeCCCCC-cEEEEEEcc--CCCeEEEEEeCCCeEEEEEC-CCCCce---eEEecc--------
Q 006743 15 SGDLILHNLASGAKAAELKDPNEQ-VLRVLDYSR--NSRHLLVTAGDDGTLHLWDT-TGRSPK---VSWLKQ-------- 79 (633)
Q Consensus 15 DG~I~IWDl~tgk~v~~~~~~~~~-~VssLafSp--dg~~lLaSGs~DGtI~IWDl-~t~~~~---v~~l~~-------- 79 (633)
..++.+||+.+.+.++.+.-.... ..-.|.|.+ +..+-|+.+.-..+|..|-. +.++.. +..+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 457999999999999998754433 344567754 45555666666677766654 333211 111111
Q ss_pred ---------CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce---eeEeeC-----------------CCCeEEEE
Q 006743 80 ---------HSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRP---SSCITY-----------------EAPFSSLA 129 (633)
Q Consensus 80 ---------H~~~VtsLafSPdg~~LaSgS-~DGtVrIWDlrtgk~---v~~i~h-----------------~~~ItsLa 129 (633)
-..-|++|.++.|.++|+..+ .+|.|+.||+.+... +..+.. .+...-|.
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq 380 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ 380 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence 134589999999888887666 688999999976432 222111 12346678
Q ss_pred EecCCCEEEEEE
Q 006743 130 FIDDDWILTAGT 141 (633)
Q Consensus 130 fSPdG~~LatGs 141 (633)
.+-||+.|...+
T Consensus 381 lS~DGkRlYvTn 392 (461)
T PF05694_consen 381 LSLDGKRLYVTN 392 (461)
T ss_dssp E-TTSSEEEEE-
T ss_pred EccCCeEEEEEe
Confidence 888888887664
No 422
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.39 E-value=9.4 Score=45.96 Aligned_cols=115 Identities=15% Similarity=0.221 Sum_probs=77.9
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----CceeEEeccCCCCe----------EEEEEcCCCCEEEEEeCC
Q 006743 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----SPKVSWLKQHSAPT----------AGISFSSDDKIIASVGLD 102 (633)
Q Consensus 37 ~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~----~~~v~~l~~H~~~V----------tsLafSPdg~~LaSgS~D 102 (633)
+....+|+|+|.....||+....|...|||+... .........+.+.| ..+.|.++.+.|+.++..
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence 3456679999988778999999999999999211 11122222222222 478898888888888765
Q ss_pred CeEEEEeCCCCceee-Ee--eCCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCC
Q 006743 103 KKLYTYDPGSRRPSS-CI--TYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 103 GtVrIWDlrtgk~v~-~i--~h~~~ItsLafSPd--G~~LatGs~DGsV~IWDlrs~ 154 (633)
.+.++|+++..... .. .....|..+.-+++ +..++. + ...|.+.|+...
T Consensus 225 -~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-T-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 225 -KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-T-SKEIIWLDVKSS 278 (765)
T ss_pred -ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-e-cCeEEEEEccCC
Confidence 58999999876533 22 35577999998887 333333 2 266888888873
No 423
>PHA02790 Kelch-like protein; Provisional
Probab=90.22 E-value=16 Score=41.44 Aligned_cols=140 Identities=12% Similarity=0.030 Sum_probs=68.9
Q ss_pred CCEEEEEECCC-----cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEec
Q 006743 6 DEHLASISLSG-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 6 G~~LaSgs~DG-----~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~D--GtI~IWDl~t~~~~v~~l~ 78 (633)
+..+++||.++ .+..||..+++....-.-.....-.+++ .-++. +++.|+.+ ..+..||...... ..+.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~-iYviGG~~~~~sve~ydp~~n~W--~~~~ 347 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNK-LYVVGGLPNPTSVERWFHGDAAW--VNMP 347 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCE-EEEECCcCCCCceEEEECCCCeE--EECC
Confidence 34556676543 4677887765432211111111111122 22444 77777754 3588888765542 1111
Q ss_pred cCCCCeE--EEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743 79 QHSAPTA--GISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (633)
Q Consensus 79 ~H~~~Vt--sLafSPdg~~LaSgS~DG---tVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~DGsV~IWDl 151 (633)
.-..+.. +++. -++++.+.|+.++ .+..||.++++-...-. ....-.+++ .-+|++.+.| |.+.+||.
T Consensus 348 ~l~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 348 SLLKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEecC
Confidence 1111111 2222 2677778887654 47789988765433221 111111222 2356666666 35788998
Q ss_pred CCC
Q 006743 152 RGK 154 (633)
Q Consensus 152 rs~ 154 (633)
++.
T Consensus 423 ~~~ 425 (480)
T PHA02790 423 SSN 425 (480)
T ss_pred CCC
Confidence 765
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.00 E-value=2.2 Score=43.43 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=47.6
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeeEe---------------eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 006743 90 SSDDKIIASVGLDKKLYTYDPGSRRPSSCI---------------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 90 SPdg~~LaSgS~DGtVrIWDlrtgk~v~~i---------------~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~ 154 (633)
..+++++++.+.+|.+++||+.+++.+..- .....|..+.++.+|.-|++- .+|..+.||..-.
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L~ 97 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDLG 97 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccccc
Confidence 346889999999999999999987764322 133567888888788766654 4578888887654
No 425
>PRK10115 protease 2; Provisional
Probab=88.46 E-value=56 Score=38.98 Aligned_cols=112 Identities=7% Similarity=0.050 Sum_probs=68.6
Q ss_pred CcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEE
Q 006743 38 QVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD------KKLYT 107 (633)
Q Consensus 38 ~~VssLafSpdg~~lLaSGs~DG----tI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~D------GtVrI 107 (633)
..+..+.|+|+++.++++.+.+| .|++.|+.++......+.. .-..++|.+|++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 44667889999995555544444 5889999876632222221 12569999988877666542 37888
Q ss_pred EeCCCC--ceeeEee-CCCCeEEEEE-ecCCCEEEEEEc---CCeEEEEECC
Q 006743 108 YDPGSR--RPSSCIT-YEAPFSSLAF-IDDDWILTAGTS---NGRVVFYDIR 152 (633)
Q Consensus 108 WDlrtg--k~v~~i~-h~~~ItsLaf-SPdG~~LatGs~---DGsV~IWDlr 152 (633)
+++.++ +...++. .........+ +.++++++.... ++.+.+|+..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 999887 3333333 2233332333 338887765543 4568999854
No 426
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.07 E-value=19 Score=36.74 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=60.1
Q ss_pred CCCEEEEEECC--CcEEEEECCCCceeEEEeCCC----CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006743 5 KDEHLASISLS--GDLILHNLASGAKAAELKDPN----EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (633)
Q Consensus 5 dG~~LaSgs~D--G~I~IWDl~tgk~v~~~~~~~----~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~ 78 (633)
+|.++.+.+.- ..|++||+.+++.+....-.. ++.++ .-++.+.+-.-.+|.-.+||.++-++.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit-----~~gd~~y~LTw~egvaf~~d~~t~~~lg~~-- 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGIT-----KLGDYFYQLTWKEGVAFKYDADTLEELGRF-- 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCcccccccee-----eccceEEEEEeccceeEEEChHHhhhhccc--
Confidence 35555555543 479999999998876654321 12222 123334555567888899999876643221
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 006743 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR 114 (633)
Q Consensus 79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk 114 (633)
...+.=+.++ .|++.|+.++...+++.-|.++-.
T Consensus 128 ~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 128 SYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred ccCCcceeee--cCCcceEeeCCceEEEecCHHHhh
Confidence 1223334444 356667777777788888877643
No 427
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.06 E-value=47 Score=40.14 Aligned_cols=148 Identities=14% Similarity=0.169 Sum_probs=85.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEE-------------EEEEcc--CCCeEEEEEeC----------C
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR-------------VLDYSR--NSRHLLVTAGD----------D 59 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~Vs-------------sLafSp--dg~~lLaSGs~----------D 59 (633)
++++|+.++.|+.|+-.|.++|+.+..+.. ...|. .+.-.| .+. .++.|+. +
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~ 335 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPS 335 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCC
Confidence 345788899999999999999998876642 11110 000011 122 4555642 6
Q ss_pred CeEEEEECCCCCceeEEeccC--------CC--------Ce-EEEEEcCCCCEEEEEe------------------CCCe
Q 006743 60 GTLHLWDTTGRSPKVSWLKQH--------SA--------PT-AGISFSSDDKIIASVG------------------LDKK 104 (633)
Q Consensus 60 GtI~IWDl~t~~~~v~~l~~H--------~~--------~V-tsLafSPdg~~LaSgS------------------~DGt 104 (633)
|.|+-+|.++++..-..-... .+ .+ ..+++.++..+++.+. ..+.
T Consensus 336 G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s 415 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS 415 (764)
T ss_pred cEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce
Confidence 889999999888432211110 00 11 2234455444444322 1246
Q ss_pred EEEEeCCCCceeeEee---CC-------CCeEEEEEec-CCC---EEEEEEcCCeEEEEECCCCC
Q 006743 105 LYTYDPGSRRPSSCIT---YE-------APFSSLAFID-DDW---ILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 105 VrIWDlrtgk~v~~i~---h~-------~~ItsLafSP-dG~---~LatGs~DGsV~IWDlrs~~ 155 (633)
|.-.|+++++..-.+. |. ....-+.+.. +|+ .|+.++.+|.++++|.++++
T Consensus 416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 7778888888775552 21 1111122322 553 78899999999999999984
No 428
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.93 E-value=42 Score=35.99 Aligned_cols=118 Identities=15% Similarity=0.212 Sum_probs=62.5
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-eEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v-~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~ 155 (633)
...-...+..+.-++++++++++..-..+.-||.....-. +.......|..|.|.|++...+++ ..|.|++=+.....
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 4455577899988999999988887777788886542222 222356789999999998776654 88888887722211
Q ss_pred CceEE--EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006743 156 QPLTV--LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (633)
Q Consensus 156 k~v~~--l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs 198 (633)
..... .......-.+..++|.+++...++++ .+.++++..
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg---~G~l~~S~D 260 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG---SGTLLVSTD 260 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEES---TT-EEEESS
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeC---CccEEEeCC
Confidence 11110 11111223478999999877777662 345555544
No 429
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.79 E-value=15 Score=34.83 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=68.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCc--------eeEEEeCCCCCcEEEEEEcc----CCCeEEEEEeCCCeEEEEECCCCCc
Q 006743 5 KDEHLASISLSGDLILHNLASGA--------KAAELKDPNEQVLRVLDYSR----NSRHLLVTAGDDGTLHLWDTTGRSP 72 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk--------~v~~~~~~~~~~VssLafSp----dg~~lLaSGs~DGtI~IWDl~t~~~ 72 (633)
....|+.++..|+|.|++..... .+..+. -...|++|+-.+ ++...|+.|+. ..|..||+.....
T Consensus 9 ~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d 85 (136)
T PF14781_consen 9 VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSD 85 (136)
T ss_pred CceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCch
Confidence 34478888899999999875332 333443 345667776443 23346776665 6799999987763
Q ss_pred eeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCcee
Q 006743 73 KVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPS 116 (633)
Q Consensus 73 ~v~~l~~H~~~VtsLafSP---dg~~LaSgS~DGtVrIWDlrtgk~v 116 (633)
...+.-...|+++.+-. ...-++.++.+..|.-||....+..
T Consensus 86 --~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 86 --LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred --hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 34555667888887743 2344555666777888887654443
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.67 E-value=18 Score=43.20 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=48.7
Q ss_pred cEEEEEEccCCCeEEEEEeCCCeEEEEECCC----------CCcee--EEe--------ccCCCCeEEEEEcCC---CCE
Q 006743 39 VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG----------RSPKV--SWL--------KQHSAPTAGISFSSD---DKI 95 (633)
Q Consensus 39 ~VssLafSpdg~~lLaSGs~DGtI~IWDl~t----------~~~~v--~~l--------~~H~~~VtsLafSPd---g~~ 95 (633)
.|..|.++++|. +++..|..| |.|-.+.. ++..+ +.+ ..+...|..+.|+|. +.+
T Consensus 86 ~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 466788999998 555555545 44444421 11111 111 234568999999994 689
Q ss_pred EEEEeCCCeEEEEeCCCC
Q 006743 96 IASVGLDKKLYTYDPGSR 113 (633)
Q Consensus 96 LaSgS~DGtVrIWDlrtg 113 (633)
|++-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999753
No 431
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.57 E-value=45 Score=35.92 Aligned_cols=202 Identities=13% Similarity=0.111 Sum_probs=111.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECC-------CCceeEEEeCC----CCCcEEEEEEccCCC-----------eEEEEEeC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLA-------SGAKAAELKDP----NEQVLRVLDYSRNSR-----------HLLVTAGD 58 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~-------tgk~v~~~~~~----~~~~VssLafSpdg~-----------~lLaSGs~ 58 (633)
+|+|.+.+-++....+...+||.. ....+..+... .....+.+.|+.... ..++.+++
T Consensus 29 a~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tE 108 (336)
T TIGR03118 29 SYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTE 108 (336)
T ss_pred EecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeC
Confidence 477888777777778899999986 11233344321 123456677764322 23677899
Q ss_pred CCeEEEEECCCCCc----eeEEecc-CCCCe-EEEEEcC--CCCEEEEEe-CCCeEEEEeCCCCceee------------
Q 006743 59 DGTLHLWDTTGRSP----KVSWLKQ-HSAPT-AGISFSS--DDKIIASVG-LDKKLYTYDPGSRRPSS------------ 117 (633)
Q Consensus 59 DGtI~IWDl~t~~~----~v~~l~~-H~~~V-tsLafSP--dg~~LaSgS-~DGtVrIWDlrtgk~v~------------ 117 (633)
||+|.-|.-.-... ....+.. ....| ..+++.. .+.+|+.+. ..++|.+||-.-.+...
T Consensus 109 dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPag 188 (336)
T TIGR03118 109 DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAG 188 (336)
T ss_pred CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCC
Confidence 99999998532221 1222221 12333 3455543 355555554 56788888854322110
Q ss_pred -------EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006743 118 -------CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (633)
Q Consensus 118 -------~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd 190 (633)
.+...-.|+-..-.++.+.=+.|-.-|.|-+||+... .++.+...+.-..-+.|+..|- .+ ..-.
T Consensus 189 yAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~LNaPWG~a~APa-----~F-G~~s 260 (336)
T TIGR03118 189 YAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRLNAPWGLAIAPE-----SF-GSLS 260 (336)
T ss_pred CCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcccCCceeeeChh-----hh-CCCC
Confidence 0000011222222333333344555688999999864 3333433344455667777662 11 2235
Q ss_pred CeEEEEeeCCCeEEccCCCC
Q 006743 191 ETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 191 ~~lLlSgs~Dg~IkIWDlr~ 210 (633)
+.+|+..-.|++|..+|...
T Consensus 261 g~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred CCeEEeecCCceeEEecCCC
Confidence 67788888899999999753
No 432
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=87.47 E-value=24 Score=43.84 Aligned_cols=183 Identities=12% Similarity=0.128 Sum_probs=99.3
Q ss_pred CCcEEEEECCCCceeEEEeCCCCCcEEEEEEcc-------CC-CeEEEEEe---------CCCeEEEEECCC-----CC-
Q 006743 15 SGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-------NS-RHLLVTAG---------DDGTLHLWDTTG-----RS- 71 (633)
Q Consensus 15 DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSp-------dg-~~lLaSGs---------~DGtI~IWDl~t-----~~- 71 (633)
...|.+.+.++++.+..+.-...+.|.+++..- .+ +.+|++|. .-|.++|||+-. ++
T Consensus 1003 ~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP 1082 (1366)
T KOG1896|consen 1003 QFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKP 1082 (1366)
T ss_pred cceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCC
Confidence 345666666666666555443445555555421 11 23666663 247899999821 21
Q ss_pred -----ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCe
Q 006743 72 -----PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP-GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGR 145 (633)
Q Consensus 72 -----~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl-rtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGs 145 (633)
.+....+..++.|..++=- +|.++ ++. ..+|.+|++ +....+-.--..-++......--.++|+.|.--..
T Consensus 1083 ~t~~KlKel~~eE~KGtVsavceV-~G~l~-~~~-GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ks 1159 (1366)
T KOG1896|consen 1083 FTKNKLKELYIEEQKGTVSAVCEV-RGHLL-SSQ-GQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKS 1159 (1366)
T ss_pred cccceeeeeehhhcccceEEEEEe-ccEEE-Ecc-CcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhc
Confidence 1122334566778777643 45444 333 346999999 44444322112223333333334667778877777
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCC
Q 006743 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (633)
Q Consensus 146 V~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~ 210 (633)
|.+.-.......+..+......-.+.++.|--+| ....++.+..|+.|.++-..|
T Consensus 1160 isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg----------~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1160 ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDG----------SNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred eEEEEEccCceEEEEeecCCchhhceeeeeEEcC----------CeeEEEEEcCCCcEEEEEeCC
Confidence 7776665543333333322334456777765543 445566677799888875433
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.30 E-value=6.7 Score=43.91 Aligned_cols=134 Identities=10% Similarity=0.097 Sum_probs=83.0
Q ss_pred CCCEEEEEECCCcEEEEECCC--CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---eEEecc
Q 006743 5 KDEHLASISLSGDLILHNLAS--GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK---VSWLKQ 79 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~t--gk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~---v~~l~~ 79 (633)
|.+..+.|-..|.+.-|.+.. ....-.+.....+.|..++|++|+. .|+.--.|++|.+++....+.. .+..+.
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~ 110 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKT 110 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhcc
Confidence 344444455556666665532 2233334434566899999999987 8999899999999998544422 233444
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCceeeEeeCCCCeEEEEEecCCCEEEEEE
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDP--GSRRPSSCITYEAPFSSLAFIDDDWILTAGT 141 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl--rtgk~v~~i~h~~~ItsLafSPdG~~LatGs 141 (633)
.+..|.+++|..+ .-++.....| +-+|-+ ..........+...|.--.|.++-+.++.++
T Consensus 111 k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 111 KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 5566999999955 5666666666 444443 3222222224667777777888766655443
No 434
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=85.94 E-value=63 Score=35.98 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=49.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 81 ~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
.+++..|+++|+++++|.-..+|.+.++...-.+....+. .......|.|+-+...++.- +..|.++...
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~ 287 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPD 287 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCC
Confidence 3689999999999999999999999998876555555553 34677888888654333222 4456665533
No 435
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.54 E-value=57 Score=39.40 Aligned_cols=141 Identities=9% Similarity=0.138 Sum_probs=84.5
Q ss_pred CCCcEEEEEEc---cC--CCeEEEEEeCCCeEEEEECCCC------C--------ceeEEec---cCCCCeEEEEEcC-C
Q 006743 36 NEQVLRVLDYS---RN--SRHLLVTAGDDGTLHLWDTTGR------S--------PKVSWLK---QHSAPTAGISFSS-D 92 (633)
Q Consensus 36 ~~~~VssLafS---pd--g~~lLaSGs~DGtI~IWDl~t~------~--------~~v~~l~---~H~~~VtsLafSP-d 92 (633)
...+|..|+|. .. ....++..-....+.|+...-. . ..+..+. -...+..+++|+| +
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46678888887 21 1112444455567777772111 1 0122222 1234678899999 7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCc-----eeeEe-eCCC----------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743 93 DKIIASVGLDKKLYTYDPGSRR-----PSSCI-TYEA----------PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (633)
Q Consensus 93 g~~LaSgS~DGtVrIWDlrtgk-----~v~~i-~h~~----------~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k 156 (633)
...||+....|...|||+.... ..... ...+ ....+.|.++...|++++. ..+.++|+++...
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNWQ 236 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCCc
Confidence 7899999999999999992111 11111 1112 2347889888788877765 5589999998643
Q ss_pred ceEEEeecCCCCCeeEEEEccC
Q 006743 157 PLTVLRACSSSEAVSSLCWQRA 178 (633)
Q Consensus 157 ~v~~l~~~~H~~~VtsLafsPd 178 (633)
... +........|..+.-++.
T Consensus 237 ~~~-l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 237 TEY-LVTAKTWSWILDVKRSPD 257 (765)
T ss_pred cch-hccCCChhheeeEEecCC
Confidence 211 222234566777777765
No 436
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.50 E-value=34 Score=35.57 Aligned_cols=130 Identities=17% Similarity=0.188 Sum_probs=80.1
Q ss_pred cEEEEEEccCCCeEEEEEe--C--------CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEE
Q 006743 39 VLRVLDYSRNSRHLLVTAG--D--------DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV-GLDKKLYT 107 (633)
Q Consensus 39 ~VssLafSpdg~~lLaSGs--~--------DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSg-S~DGtVrI 107 (633)
..++-..+|+|+ + +.|. + .|.++.|-....- ..+...-..-+.++|+-+.+.+... +.+-.|.-
T Consensus 110 R~NDgkvdP~Gr-y-y~GtMad~~~~le~~~g~Ly~~~~~h~v---~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 110 RLNDGKVDPDGR-Y-YGGTMADFGDDLEPIGGELYSWLAGHQV---ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred ccccCccCCCCc-e-eeeeeccccccccccccEEEEeccCCCc---eeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 344556788998 3 3332 2 2455666554332 2233333455788999877766555 45667877
Q ss_pred Ee--CCCCcee-----eEeeC----C-CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEE
Q 006743 108 YD--PGSRRPS-----SCITY----E-APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCW 175 (633)
Q Consensus 108 WD--lrtgk~v-----~~i~h----~-~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLaf 175 (633)
|| ..+|... ..+.. + -..-.+++..+|+..++.-..++|...|+.+++ .+..+.. ....|+|+||
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK-~L~eikl--Pt~qitsccF 261 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK-ILLEIKL--PTPQITSCCF 261 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc-EEEEEEc--CCCceEEEEe
Confidence 87 5555332 22211 1 123356667788888888888999999999984 4455553 3678999998
Q ss_pred c
Q 006743 176 Q 176 (633)
Q Consensus 176 s 176 (633)
-
T Consensus 262 g 262 (310)
T KOG4499|consen 262 G 262 (310)
T ss_pred c
Confidence 4
No 437
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.48 E-value=46 Score=37.09 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=62.3
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---eeEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 006743 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---KVSWLKQ--HSAPTAGISFSSDDKIIASVGLDKKLYTYD 109 (633)
Q Consensus 35 ~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~---~v~~l~~--H~~~VtsLafSPdg~~LaSgS~DGtVrIWD 109 (633)
.....+..+.|.+++. ++.++.+|.+..=+-..... ....+.. ....+.++.|.+++.. +.++.+|.+....
T Consensus 278 ~~~~~l~~v~~~~dg~--l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~ 354 (398)
T PLN00033 278 ASARRIQNMGWRADGG--LWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRST 354 (398)
T ss_pred CCccceeeeeEcCCCC--EEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeC
Confidence 3455678889998887 44455677765433332211 0111111 2235888999876654 5556677665553
Q ss_pred CCCCceeeEe----eCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 006743 110 PGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (633)
Q Consensus 110 lrtgk~v~~i----~h~~~ItsLafSPdG~~LatGs~DGsV~IW 149 (633)
..++.-... .....++.+.|.++++.++ .+.+|.|.-|
T Consensus 355 -D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 355 -DGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDGVLLRY 396 (398)
T ss_pred -CCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCcEEEEe
Confidence 334432222 2345688999887765554 4566776554
No 438
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.38 E-value=43 Score=41.27 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=90.2
Q ss_pred cEEEEECCCCceeEEEeCCC---CCcEEEEEEccCCCe-EEEEEe-----------CCCeEEEEECCCCCceeEEecc--
Q 006743 17 DLILHNLASGAKAAELKDPN---EQVLRVLDYSRNSRH-LLVTAG-----------DDGTLHLWDTTGRSPKVSWLKQ-- 79 (633)
Q Consensus 17 ~I~IWDl~tgk~v~~~~~~~---~~~VssLafSpdg~~-lLaSGs-----------~DGtI~IWDl~t~~~~v~~l~~-- 79 (633)
.|+++|..+++.++.+.-.. .-.+..+.|+..+.. ++++|. .+|.++.|++-........+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 48899988888777665322 223555666655443 333332 2355788877433322333221
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~---h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k 156 (633)
-.+.|. +..|...++++| ....+++||+...++.+... ....|..+++. +..|++|...-.|+++-.+...+
T Consensus 934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCC
Confidence 223333 455644444444 44689999998877765542 35567777775 67888888877777766655444
Q ss_pred ceEEEeecCCCCCeeEEEEc
Q 006743 157 PLTVLRACSSSEAVSSLCWQ 176 (633)
Q Consensus 157 ~v~~l~~~~H~~~VtsLafs 176 (633)
.+..+..-.-...|+++.+-
T Consensus 1009 ~l~~fadD~~pR~Vt~~~~l 1028 (1205)
T KOG1898|consen 1009 QLIVFADDPVPRHVTALELL 1028 (1205)
T ss_pred eEEEEeCCCccceeeEEEEe
Confidence 44455433444556666654
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=84.77 E-value=30 Score=37.32 Aligned_cols=143 Identities=10% Similarity=0.102 Sum_probs=74.5
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-Eec--c
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS-WLK--Q 79 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~-~l~--~ 79 (633)
.+++.+++++ ..|.+..-.-..++.-..+.......+.++.+.++++ +++ .+..|.+++=....+..-.. ... .
T Consensus 181 ~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~-vg~~G~~~~~s~d~G~sW~~~~~~~~~ 257 (334)
T PRK13684 181 SPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWM-LARGGQIRFNDPDDLESWSKPIIPEIT 257 (334)
T ss_pred CCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEE-EecCCEEEEccCCCCCccccccCCccc
Confidence 4555555444 4554443211222333333434456788889999887 444 45668765432333221010 000 0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe----eCCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 006743 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (633)
Q Consensus 80 H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i----~h~~~ItsLafSPdG~~LatGs~DGsV~IWDl 151 (633)
....+..+.+.+++..+ .++.+|.|.. -...++.-... ......+.+.|..+++.++ .+..|.|.-|+-
T Consensus 258 ~~~~l~~v~~~~~~~~~-~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 258 NGYGYLDLAYRTPGEIW-AGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred cccceeeEEEcCCCCEE-EEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 12357888998876654 4556675543 33334332222 1223577788876665544 556788877764
No 440
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.61 E-value=10 Score=47.22 Aligned_cols=140 Identities=21% Similarity=0.269 Sum_probs=83.1
Q ss_pred EECCCcEEEEECCCCceeEEEeCCCCCcEEEEE-------EccCCCeEEEEEeCCCeEEEEECCC----CCce----eEE
Q 006743 12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLD-------YSRNSRHLLVTAGDDGTLHLWDTTG----RSPK----VSW 76 (633)
Q Consensus 12 gs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLa-------fSpdg~~lLaSGs~DGtI~IWDl~t----~~~~----v~~ 76 (633)
.+.|+.+.+|+.+++.....+.+-....+...- |.|.=+++|+.+. --.|.|+-+.- .... ...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCccccccccee
Confidence 456899999999987776666542222222211 2333344455443 35566665521 1100 011
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEE--EeCCCC---c-e-----------------eeEe-eCCCCeEEEEEec
Q 006743 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYT--YDPGSR---R-P-----------------SSCI-TYEAPFSSLAFID 132 (633)
Q Consensus 77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrI--WDlrtg---k-~-----------------v~~i-~h~~~ItsLafSP 132 (633)
+......|+|+....+|+.|++|-+| .|+- |....+ + + .... .+..+|..+.++.
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 22335678899877788877766655 3331 111111 1 1 1111 2467899999998
Q ss_pred CCCEEEEEEcCCeEEEEECCC
Q 006743 133 DDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 133 dG~~LatGs~DGsV~IWDlrs 153 (633)
.-.++.+-+..|+|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 888999999999999999986
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.42 E-value=0.25 Score=58.39 Aligned_cols=109 Identities=10% Similarity=0.111 Sum_probs=59.4
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEE-----------EEEccCCCeEEEEEeCCCeEEEEECC----
Q 006743 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRV-----------LDYSRNSRHLLVTAGDDGTLHLWDTT---- 68 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~Vss-----------LafSpdg~~lLaSGs~DGtI~IWDl~---- 68 (633)
++.-++..+-.++.|++.++.+... ..+.+ |...+.. -..+|||. .|++++.||.++.|.+-
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs-Hs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALR-SLFRS-HSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHH-HHHHh-cCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeecc
Confidence 3445666677788888877654322 22333 3222222 23688998 89999999999888762
Q ss_pred -CCCceeEEeccCC-CCeEEEEEcCCC---------CEEEEEe-CCCeEEEEeCCCCcee
Q 006743 69 -GRSPKVSWLKQHS-APTAGISFSSDD---------KIIASVG-LDKKLYTYDPGSRRPS 116 (633)
Q Consensus 69 -t~~~~v~~l~~H~-~~VtsLafSPdg---------~~LaSgS-~DGtVrIWDlrtgk~v 116 (633)
...+ .+.++.|. .+-.|.-++.+. .++++++ .+..+++|.....+|.
T Consensus 270 ~~~rc-lhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 270 IVHRC-LHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccHhh-hhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 1112 34455565 333332233211 1233333 3446888877665554
No 442
>PLN02153 epithiospecifier protein
Probab=84.30 E-value=39 Score=36.15 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCEEEEEECC-----CcEEEEECCCCceeE--EEeC---CCCCcEEEEEEccCCCeEEEEEeCC-----------CeEEE
Q 006743 6 DEHLASISLS-----GDLILHNLASGAKAA--ELKD---PNEQVLRVLDYSRNSRHLLVTAGDD-----------GTLHL 64 (633)
Q Consensus 6 G~~LaSgs~D-----G~I~IWDl~tgk~v~--~~~~---~~~~~VssLafSpdg~~lLaSGs~D-----------GtI~I 64 (633)
++.++.|+.+ ..+.+||+.+.+-.. .+.. .....-.+++. -++ .+++.|+.+ ..|.+
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DEN-HVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECC-EEEEECCccCCCccCCCcccceEEE
Confidence 4445556543 357788887654321 1100 11111112222 233 367777754 25788
Q ss_pred EECCCCCceeEEeccC-----CCCeEEEEEcCCCCEEEEEeCC-------------CeEEEEeCCCCceeeEeeC---C-
Q 006743 65 WDTTGRSPKVSWLKQH-----SAPTAGISFSSDDKIIASVGLD-------------KKLYTYDPGSRRPSSCITY---E- 122 (633)
Q Consensus 65 WDl~t~~~~v~~l~~H-----~~~VtsLafSPdg~~LaSgS~D-------------GtVrIWDlrtgk~v~~i~h---~- 122 (633)
||..+.... .+... ...-.+++. -++++++.++.+ ..|.+||+.+.+-...... .
T Consensus 164 yd~~~~~W~--~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~ 240 (341)
T PLN02153 164 YNIADGKWV--QLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS 240 (341)
T ss_pred EECCCCeEe--eCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence 898766522 11111 111112222 256666655532 3688999987654433211 1
Q ss_pred CCeEEEEEecCCCEEEEEEcC--------------CeEEEEECCCC
Q 006743 123 APFSSLAFIDDDWILTAGTSN--------------GRVVFYDIRGK 154 (633)
Q Consensus 123 ~~ItsLafSPdG~~LatGs~D--------------GsV~IWDlrs~ 154 (633)
......+..-++++++.|+.. ..|+.||+.+.
T Consensus 241 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 241 ARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 111111122246777777742 25778887764
No 443
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.29 E-value=3.7 Score=31.17 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.9
Q ss_pred CCeEEEEEecCC---CEEEEEEcCCeEEEEECCCC
Q 006743 123 APFSSLAFIDDD---WILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 123 ~~ItsLafSPdG---~~LatGs~DGsV~IWDlrs~ 154 (633)
+.|.++.|+|.+ ..|+..-..|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 478999999854 58888888899999999953
No 444
>PRK13684 Ycf48-like protein; Provisional
Probab=83.98 E-value=67 Score=34.64 Aligned_cols=141 Identities=14% Similarity=0.143 Sum_probs=74.3
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEEE-ECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 006743 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLW-DTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (633)
Q Consensus 37 ~~~VssLafSpdg~~lLaSGs~DGtI~IW-Dl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~ 115 (633)
...+.++.+.+++. ++..+..|.+..- |-..... ......-...++++.+.++++.++++ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~g~--~v~~g~~G~i~~s~~~gg~tW-~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGK--YVAVSSRGNFYSTWEPGQTAW-TPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCe--EEEEeCCceEEEEcCCCCCeE-EEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45677888888865 4455556765532 2221111 12223344678999999988876654 567665433333332
Q ss_pred eeEee-----CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee-cCCCCCeeEEEEccCCCeEEE
Q 006743 116 SSCIT-----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA-CSSSEAVSSLCWQRAKPVFID 184 (633)
Q Consensus 116 v~~i~-----h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~-~~H~~~VtsLafsPdg~~Las 184 (633)
-.... ....+..+.+.+++..++ ++.+|.|.. ....+ +....... ..-....+.+.|..+++.++.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKGFVL 319 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCC-CCCeECCcCCCCCcceEEEEEeCCCceEEE
Confidence 22111 224578899998877555 445675553 33333 22222221 111234666776654444443
No 445
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.83 E-value=29 Score=35.38 Aligned_cols=101 Identities=11% Similarity=0.157 Sum_probs=63.0
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC------eEEEE---eCC--CCceee---
Q 006743 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK------KLYTY---DPG--SRRPSS--- 117 (633)
Q Consensus 52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DG------tVrIW---Dlr--tgk~v~--- 117 (633)
.|+.+...+.|.+|++.........-..--+.|..+.++..|++|++--.+. .+|+| +.. ...++.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi 109 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI 109 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence 4545466788999999854444444444558899999999999999965432 45654 221 111111
Q ss_pred --------------------EeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 118 --------------------CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 118 --------------------~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
.+.....+.+++..|-.--|++|+ ++++.+|.+..
T Consensus 110 aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 110 AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 112345677888888544445554 46788887764
No 446
>PLN02153 epithiospecifier protein
Probab=83.15 E-value=37 Score=36.27 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=51.0
Q ss_pred eEEEEEeCC-----CeEEEEECCCCCcee-EEec----cCCCCeEEEEEcCCCCEEEEEeCC-----------CeEEEEe
Q 006743 51 HLLVTAGDD-----GTLHLWDTTGRSPKV-SWLK----QHSAPTAGISFSSDDKIIASVGLD-----------KKLYTYD 109 (633)
Q Consensus 51 ~lLaSGs~D-----GtI~IWDl~t~~~~v-~~l~----~H~~~VtsLafSPdg~~LaSgS~D-----------GtVrIWD 109 (633)
.+++.|+.+ ..+.+||..+.+... ..+. .....-.+++. -++++++.|+.+ ..|.+||
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 477777753 357889987655211 1110 00111112222 256677777754 2578899
Q ss_pred CCCCceeeEeeC----CCC-eEEEEEecCCCEEEEEEcC-------------CeEEEEECCCC
Q 006743 110 PGSRRPSSCITY----EAP-FSSLAFIDDDWILTAGTSN-------------GRVVFYDIRGK 154 (633)
Q Consensus 110 lrtgk~v~~i~h----~~~-ItsLafSPdG~~LatGs~D-------------GsV~IWDlrs~ 154 (633)
+++.+-...-.. ... -.+++. -++++++.|+.+ ..|.+||+.+.
T Consensus 166 ~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~ 227 (341)
T PLN02153 166 IADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG 227 (341)
T ss_pred CCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCC
Confidence 887654322111 111 112222 256666665532 35888888765
No 447
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.74 E-value=17 Score=41.35 Aligned_cols=137 Identities=16% Similarity=0.197 Sum_probs=87.3
Q ss_pred EEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCC-------eEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 006743 11 SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-------HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (633)
Q Consensus 11 Sgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~-------~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~ 83 (633)
.|+....++-.|++.|+.+.+... +..+ .|.|.|... ..|+ |-.+..|.-.|.+-...++. .......
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~-~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~-v~esKdY 559 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDL-KDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK-VVESKDY 559 (776)
T ss_pred cCCCcccceeeecccceeeeEeec-CCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCcee-eeeehhc
Confidence 355566788888889998888775 3333 467887531 1343 44455565556543332222 2222333
Q ss_pred eEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 84 TAGISFSS----DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 84 VtsLafSP----dg~~LaSgS~DGtVrIWDlrtgk~v~~i-~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
++--.|+. ...+|+.++..|.|++||--.-+....+ +.+..|..+....+|++|++.|. .++.+.|++-
T Consensus 560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 33333432 4568999999999999996443333333 56788999999999999887776 5677777764
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=82.74 E-value=25 Score=39.90 Aligned_cols=140 Identities=12% Similarity=-0.010 Sum_probs=68.7
Q ss_pred CCCEEEEEECC--CcEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCC---eEEEEECCCCCceeEEe
Q 006743 5 KDEHLASISLS--GDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDG---TLHLWDTTGRSPKVSWL 77 (633)
Q Consensus 5 dG~~LaSgs~D--G~I~IWDl~tgk~v~--~~~~~~~~~VssLafSpdg~~lLaSGs~DG---tI~IWDl~t~~~~v~~l 77 (633)
+|+..+.||.+ ..+..||..+++... .+... .... +++ .-++. +.+.|+.++ .+..||..+........
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~-r~~~-~~~-~~~g~-IYviGG~~~~~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP-RCNP-AVA-SINNV-IYVIGGHSETDTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC-Cccc-EEE-EECCE-EEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence 45556667653 357788876553321 12110 1111 112 22444 777877654 47788887655221100
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee--C-CCCeEEEEEecCCCEEEEEEcC-----CeEEEE
Q 006743 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--Y-EAPFSSLAFIDDDWILTAGTSN-----GRVVFY 149 (633)
Q Consensus 78 ~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~--h-~~~ItsLafSPdG~~LatGs~D-----GsV~IW 149 (633)
......-.+++ .-++++.+.|+ .+.+||.++++-...-. . ......+. -+|++.++|+.+ ..|.+|
T Consensus 394 m~~~r~~~~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Y 467 (480)
T PHA02790 394 TYYPHYKSCAL-VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVY 467 (480)
T ss_pred CCCccccceEE-EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEE
Confidence 01111111222 12466566653 47789998765443221 1 11222222 257777888754 357778
Q ss_pred ECCCC
Q 006743 150 DIRGK 154 (633)
Q Consensus 150 Dlrs~ 154 (633)
|..+.
T Consensus 468 d~~~~ 472 (480)
T PHA02790 468 NNRTY 472 (480)
T ss_pred ECCCC
Confidence 77765
No 449
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=82.34 E-value=79 Score=34.27 Aligned_cols=90 Identities=16% Similarity=0.060 Sum_probs=66.2
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcC--------------------C
Q 006743 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN--------------------G 144 (633)
Q Consensus 85 tsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~D--------------------G 144 (633)
.+..|. ++++.++=+..|.|..+|..+|+........+....++|. |.++++|-.. .
T Consensus 206 hSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~C 282 (335)
T TIGR03032 206 HSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGC 282 (335)
T ss_pred cCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcc
Confidence 344555 7888889899999999999988877777777889999998 8888877541 2
Q ss_pred eEEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 006743 145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA 178 (633)
Q Consensus 145 sV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPd 178 (633)
-|.+.|++++ ..+..++..+--..+..+++-|.
T Consensus 283 Gv~vidl~tG-~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 283 GVAVIDLNSG-DVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred cEEEEECCCC-CEEEEEEeCCceeEEEEEEEecC
Confidence 2667777777 44555665555566677777664
No 450
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.28 E-value=7 Score=39.73 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=41.7
Q ss_pred ccCCCeEEEEEeCCCeEEEEECCCCCceeEE------ec-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 006743 46 SRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW------LK-------QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS 112 (633)
Q Consensus 46 Spdg~~lLaSGs~DGtI~IWDl~t~~~~v~~------l~-------~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrt 112 (633)
..++. ++++...+|.+++||+.+.+..... +. .....|..+.++.+|.-|++-+ +|..+.||..-
T Consensus 19 ~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 19 ECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 34455 7888899999999999887643221 11 2445566677776666555544 35566766543
No 451
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.60 E-value=18 Score=41.34 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=65.8
Q ss_pred EEEEeCCCeEEEEECCCCCceeEEecc---------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-
Q 006743 53 LVTAGDDGTLHLWDTTGRSPKVSWLKQ---------------------HSAPTAGISFSSDDKIIASVGLDKKLYTYDP- 110 (633)
Q Consensus 53 LaSGs~DGtI~IWDl~t~~~~v~~l~~---------------------H~~~VtsLafSPdg~~LaSgS~DGtVrIWDl- 110 (633)
++.+..| .++.||-+.....+..+++ -.-.|..+..++.|..++-.+-+|.+.++=.
T Consensus 55 ~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~ 133 (741)
T KOG4460|consen 55 VVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPK 133 (741)
T ss_pred hhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEchh
Confidence 3444444 7788877655544333331 1124677888999999999999996655432
Q ss_pred --------CCCceeeEe---e---------CCCCeEEEEEecCC---CEEEEEEcCCeEEEEECCCCC
Q 006743 111 --------GSRRPSSCI---T---------YEAPFSSLAFIDDD---WILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 111 --------rtgk~v~~i---~---------h~~~ItsLafSPdG---~~LatGs~DGsV~IWDlrs~~ 155 (633)
++++.+... . ..-.+..++|+|+. ..|+.-..|..|++||+....
T Consensus 134 rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 134 RWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred hcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 344433221 1 11235678999974 678888899999999998753
No 452
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.52 E-value=20 Score=40.87 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=81.2
Q ss_pred ccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEeCCC-Cceee
Q 006743 46 SRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-------IIASVGLDKKLYTYDPGS-RRPSS 117 (633)
Q Consensus 46 Spdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~-------~LaSgS~DGtVrIWDlrt-gk~v~ 117 (633)
..+..-++..|+....++-.|++.++. +..+..|... -+.|.|+.+ .-++|-.+..|.-.|.|- +..+.
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkv-veeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKV-VEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred cCCcceEEecCCCcccceeeeccccee-eeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 334443455566777888888888773 5666666554 466776422 223444555666678774 33333
Q ss_pred EeeCC-----CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006743 118 CITYE-----APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (633)
Q Consensus 118 ~i~h~-----~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~ 185 (633)
..... ....|..-. ..-+||+++..|-|++||--... ....+ ++-...|..|....+|+++++.
T Consensus 553 v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~r-AKtal--P~lG~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKR-AKTAL--PGLGDAIKHIDVTANGKHILAT 621 (776)
T ss_pred eeeehhccccccccccccc-cCceEEEecCCCceeeehhhcch-hhhcC--cccccceeeeEeecCCcEEEEe
Confidence 32222 223333222 35689999999999999965431 11222 3567889999999999887654
No 453
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=81.39 E-value=5.3 Score=30.35 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=26.1
Q ss_pred CCeEEEEEcC-CC--CEEEEEeCCCeEEEEeCCC
Q 006743 82 APTAGISFSS-DD--KIIASVGLDKKLYTYDPGS 112 (633)
Q Consensus 82 ~~VtsLafSP-dg--~~LaSgS~DGtVrIWDlrt 112 (633)
+.|.++.|+| .+ .+|+..-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998 44 5888888888999999995
No 454
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=81.38 E-value=82 Score=35.39 Aligned_cols=108 Identities=11% Similarity=0.157 Sum_probs=66.6
Q ss_pred cCCCeEEEEEeCCCeEEEEECCCCCce---eEEeccCCCCeEEEEEcC----CCCEEEEEeCCCeEEEEeCCC--Cc---
Q 006743 47 RNSRHLLVTAGDDGTLHLWDTTGRSPK---VSWLKQHSAPTAGISFSS----DDKIIASVGLDKKLYTYDPGS--RR--- 114 (633)
Q Consensus 47 pdg~~lLaSGs~DGtI~IWDl~t~~~~---v~~l~~H~~~VtsLafSP----dg~~LaSgS~DGtVrIWDlrt--gk--- 114 (633)
+++...|+.|+..|.++||+....... +..-..-..+|..++.-. .....++.=.-+.+.||.+.. +.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 445558999999999999998544311 222234457888887642 233344445667788888732 11
Q ss_pred --ee---eEee--CCCCeEEEEEecC-----CCEEEEEEcCCeEEEEECCCC
Q 006743 115 --PS---SCIT--YEAPFSSLAFIDD-----DWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 115 --~v---~~i~--h~~~ItsLafSPd-----G~~LatGs~DGsV~IWDlrs~ 154 (633)
.. .... .......+++-|- -.+|.+-+-||.+.+|+-+..
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~ 165 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF 165 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE
Confidence 11 1112 2344455555552 367888999999999997764
No 455
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=80.85 E-value=83 Score=33.55 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=20.1
Q ss_pred CeEEEEECCCCCceeEEecc--CC-CCeEEEEEcCCCCEEEEEeCC
Q 006743 60 GTLHLWDTTGRSPKVSWLKQ--HS-APTAGISFSSDDKIIASVGLD 102 (633)
Q Consensus 60 GtI~IWDl~t~~~~v~~l~~--H~-~~VtsLafSPdg~~LaSgS~D 102 (633)
..|.+||..+.+.. .+.. .. ..-.+++. -++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~--~~~~~p~~~r~~~~~~~-~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWR--NLGENPFLGTAGSAIVH-KGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCcee--ECccCCCCcCCCceEEE-ECCEEEEEeeee
Confidence 46889998776532 1111 11 11122222 257777777753
No 456
>PLN02193 nitrile-specifier protein
Probab=79.99 E-value=71 Score=36.09 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=53.7
Q ss_pred eEEEEEeCC-----CeEEEEECCCCCceeEEeccC-----CCCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCce
Q 006743 51 HLLVTAGDD-----GTLHLWDTTGRSPKVSWLKQH-----SAPTAGISFSSDDKIIASVGLDK-----KLYTYDPGSRRP 115 (633)
Q Consensus 51 ~lLaSGs~D-----GtI~IWDl~t~~~~v~~l~~H-----~~~VtsLafSPdg~~LaSgS~DG-----tVrIWDlrtgk~ 115 (633)
.+++.|+.+ ..+.+||+.+.+.. .+... ...-.+++. -++++++.|+.++ .+..||+.+.+-
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~--~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWK--LLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEE--EcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 477777765 35888998776532 11111 111122222 2566777777543 577889887654
Q ss_pred eeEee------CCCCeEEEEEecCCCEEEEEEcC----CeEEEEECCCC
Q 006743 116 SSCIT------YEAPFSSLAFIDDDWILTAGTSN----GRVVFYDIRGK 154 (633)
Q Consensus 116 v~~i~------h~~~ItsLafSPdG~~LatGs~D----GsV~IWDlrs~ 154 (633)
...-. ..... .++. -++++++.++.+ ..|.+||+.+.
T Consensus 307 ~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 307 FHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCC
Confidence 32211 01111 1222 257777777765 45899999875
No 457
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=79.67 E-value=17 Score=40.57 Aligned_cols=79 Identities=11% Similarity=0.166 Sum_probs=52.6
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCC-eEEEEEecC-----------------CCE-
Q 006743 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAP-FSSLAFIDD-----------------DWI- 136 (633)
Q Consensus 77 l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~-h~~~-ItsLafSPd-----------------G~~- 136 (633)
+......+.+++.+|++++.++...=|.|.++|+.++..++..+ +.+. +.-+..... ..+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 44455678999999999999998888899999999988777663 2111 111111111 112
Q ss_pred EEEEEcCCeEEEEECCCCC
Q 006743 137 LTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 137 LatGs~DGsV~IWDlrs~~ 155 (633)
++-.-.-|.|.||+++.+.
T Consensus 383 vIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEEeccCCeEEEEecCCCC
Confidence 2345567889999998874
No 458
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=79.27 E-value=90 Score=33.01 Aligned_cols=103 Identities=8% Similarity=0.063 Sum_probs=54.1
Q ss_pred eEEEEEeCC-----CeEEEEECCCCCce--eEEeccCCCCe--EEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCcee
Q 006743 51 HLLVTAGDD-----GTLHLWDTTGRSPK--VSWLKQHSAPT--AGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPS 116 (633)
Q Consensus 51 ~lLaSGs~D-----GtI~IWDl~t~~~~--v~~l~~H~~~V--tsLafSPdg~~LaSgS~D-----GtVrIWDlrtgk~v 116 (633)
.+++.|+.+ ..+..||+.+.... ...+..-..+. .+++.. ++++.+.|+.. ..+..||+.+.+-.
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 477777764 35777787665421 11111111111 122222 56677777642 36889999876543
Q ss_pred eEe--eCCCCeEEEEEecCCCEEEEEEcCC----eEEEEECCCC
Q 006743 117 SCI--TYEAPFSSLAFIDDDWILTAGTSNG----RVVFYDIRGK 154 (633)
Q Consensus 117 ~~i--~h~~~ItsLafSPdG~~LatGs~DG----sV~IWDlrs~ 154 (633)
..- .........+...++++.+.|+.++ .+.+||+++.
T Consensus 153 ~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 322 1111222222334577777887664 3568888875
No 459
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=78.97 E-value=60 Score=30.81 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=57.7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCC--------CceeeEeeCCCCeEEEEEec-----CCCEEEEEEcCCeEEEEECCC
Q 006743 87 ISFSSDDKIIASVGLDKKLYTYDPGS--------RRPSSCITYEAPFSSLAFID-----DDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 87 LafSPdg~~LaSgS~DGtVrIWDlrt--------gk~v~~i~h~~~ItsLafSP-----dG~~LatGs~DGsV~IWDlrs 153 (633)
-+|......|++++.-++|.|++... ...+..+.....|++++--+ +...|+.|+. ..|..||+.+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 35666666788888999999998763 33456667788888887655 2456666665 5699999998
Q ss_pred CCCceEEEeecCCCCCeeEEEEc
Q 006743 154 KPQPLTVLRACSSSEAVSSLCWQ 176 (633)
Q Consensus 154 ~~k~v~~l~~~~H~~~VtsLafs 176 (633)
....+ ++ .-...|.++.+-
T Consensus 83 N~d~F--yk--e~~DGvn~i~~g 101 (136)
T PF14781_consen 83 NSDLF--YK--EVPDGVNAIVIG 101 (136)
T ss_pred Cchhh--hh--hCccceeEEEEE
Confidence 74322 11 234667777764
No 460
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=77.71 E-value=1.1e+02 Score=33.10 Aligned_cols=146 Identities=13% Similarity=0.081 Sum_probs=82.3
Q ss_pred EEEEEECCCcEEEEECCCCce-----eEEEeCC-CCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCce------
Q 006743 8 HLASISLSGDLILHNLASGAK-----AAELKDP-NEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPK------ 73 (633)
Q Consensus 8 ~LaSgs~DG~I~IWDl~tgk~-----v~~~~~~-~~~~VssLafSpd--g~~lLaSGs~DGtI~IWDl~t~~~~------ 73 (633)
.++.++.||+|.-|...-+.. ...+... ...+...+++... +..+.++=-..++|.|||-.-....
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 367789999999998643222 1222221 2344555666543 4434444456899999987533211
Q ss_pred ------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---CCeEEEEEec------
Q 006743 74 ------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFID------ 132 (633)
Q Consensus 74 ------------v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~---~~ItsLafSP------ 132 (633)
++.+. ..-.|+-..-.++.+.=+.|..-|.|-+||+. ++.++.+... ...+.|+..|
T Consensus 182 DP~iPagyAPFnIqnig-~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLG-GTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCCcceEEEC-CeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 00000 00011111112222222334445689999986 6666666443 3456777766
Q ss_pred CCCEEEEEEcCCeEEEEECCCCC
Q 006743 133 DDWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 133 dG~~LatGs~DGsV~IWDlrs~~ 155 (633)
.|.+|+---.||+|..||..++.
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCc
Confidence 36677766679999999998764
No 461
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=76.99 E-value=43 Score=35.51 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=66.3
Q ss_pred CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe------CCCeEEEEECCCCCceeEEecc-----CCCCe
Q 006743 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG------DDGTLHLWDTTGRSPKVSWLKQ-----HSAPT 84 (633)
Q Consensus 16 G~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs------~DGtI~IWDl~t~~~~v~~l~~-----H~~~V 84 (633)
..|++||..+.+-..- -..-...|+.|.|..+.+ +++.|. ....+..||..+.. ...+.. -.++|
T Consensus 16 ~~lC~yd~~~~qW~~~-g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSP-GNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIPGPV 91 (281)
T ss_pred CEEEEEECCCCEeecC-CCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCCCcE
Confidence 4699999866554332 223567899999985543 677664 45678999998776 233333 23788
Q ss_pred EEEEEcC-CCCEEE-EEe-C--CCeEEEEeCCCCceeeE--eeCCCCeEEEEEe
Q 006743 85 AGISFSS-DDKIIA-SVG-L--DKKLYTYDPGSRRPSSC--ITYEAPFSSLAFI 131 (633)
Q Consensus 85 tsLafSP-dg~~La-SgS-~--DGtVrIWDlrtgk~v~~--i~h~~~ItsLafS 131 (633)
..+.+.. |...+. .|. . +..|..||=.+...+.. +.....|..+.+-
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 8888854 454444 333 2 33577787555444333 2223445555443
No 462
>PLN02193 nitrile-specifier protein
Probab=76.98 E-value=87 Score=35.41 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=70.4
Q ss_pred CCEEEEEECC-----CcEEEEECCCCceeEEEeC---CCCCcEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCCc
Q 006743 6 DEHLASISLS-----GDLILHNLASGAKAAELKD---PNEQVLRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGRSP 72 (633)
Q Consensus 6 G~~LaSgs~D-----G~I~IWDl~tgk~v~~~~~---~~~~~VssLafSpdg~~lLaSGs~DG-----tI~IWDl~t~~~ 72 (633)
++.++.|+.+ +.+.+||+.+.+-...-.. .....-.+++. -++ .+++.|+.++ .+..||+.+.+.
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEE-NVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECC-EEEEECCCCCCCCcceEEEEECCCCEE
Confidence 3444555544 3578888876543221110 11111112222 233 4777777543 467888876542
Q ss_pred eeEEecc------CCCCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeeEeeC-----CCCeEEEEEecCCCEE
Q 006743 73 KVSWLKQ------HSAPTAGISFSSDDKIIASVGLD----KKLYTYDPGSRRPSSCITY-----EAPFSSLAFIDDDWIL 137 (633)
Q Consensus 73 ~v~~l~~------H~~~VtsLafSPdg~~LaSgS~D----GtVrIWDlrtgk~v~~i~h-----~~~ItsLafSPdG~~L 137 (633)
. .+.. .... ..++. -++++++.++.+ ..|.+||+.+.+-...... .....+++ .-+++++
T Consensus 307 ~--~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iy 381 (470)
T PLN02193 307 F--HCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIV 381 (470)
T ss_pred E--eCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEE
Confidence 1 1111 0111 11222 256777777765 4689999988765433211 11111222 2256777
Q ss_pred EEEEcC--------------CeEEEEECCCC
Q 006743 138 TAGTSN--------------GRVVFYDIRGK 154 (633)
Q Consensus 138 atGs~D--------------GsV~IWDlrs~ 154 (633)
+.|+.+ ..+.+||+.+.
T Consensus 382 v~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 382 IFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred EECCccCCccccccCccceeccEEEEEcCcC
Confidence 777753 24788888765
No 463
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=76.15 E-value=97 Score=33.30 Aligned_cols=101 Identities=19% Similarity=0.224 Sum_probs=54.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCce---eEEE---eCCCCCcEEEEEEccC---CCeEEEEEeCC--------CeEE
Q 006743 1 MYNCKDEHLASISLSGDLILHNLASGAK---AAEL---KDPNEQVLRVLDYSRN---SRHLLVTAGDD--------GTLH 63 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~tgk~---v~~~---~~~~~~~VssLafSpd---g~~lLaSGs~D--------GtI~ 63 (633)
+|.|||+.++ +...|.|++++ .++.. +..+ .......+..++++|+ +..+++..... ..|.
T Consensus 8 a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~ 85 (331)
T PF07995_consen 8 AFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVV 85 (331)
T ss_dssp EEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEE
T ss_pred EEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeE
Confidence 4789987766 56799999999 45543 2222 1223456778999994 23234433321 2455
Q ss_pred EEECCCCC-------ceeEEecc---CCCCeEEEEEcCCCCEEEEEeCCC
Q 006743 64 LWDTTGRS-------PKVSWLKQ---HSAPTAGISFSSDDKIIASVGLDK 103 (633)
Q Consensus 64 IWDl~t~~-------~~v~~l~~---H~~~VtsLafSPdg~~LaSgS~DG 103 (633)
-|...... .++..+.. .......|+|.||+.+.++.+..+
T Consensus 86 r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 86 RFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred EEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 45554331 11111122 234567799999998777776554
No 464
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=76.08 E-value=2.1e+02 Score=35.47 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=61.5
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC--C-C---EEEEEeCCCeEEEEeCCCCceeeEe---e--
Q 006743 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD--D-K---IIASVGLDKKLYTYDPGSRRPSSCI---T-- 120 (633)
Q Consensus 52 lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPd--g-~---~LaSgS~DGtVrIWDlrtgk~v~~i---~-- 120 (633)
.++.++.++.+...++.........-+.....|.|+.++|- + + .++.|.++..+.+.-....-...+. .
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~ 580 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE 580 (1096)
T ss_pred EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC
Confidence 45666666766666665544222222334578999999972 2 3 6888888887665443222222111 1
Q ss_pred -CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 121 -YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 121 -h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
....|.-.++--|..+|.++..||.+.-|-+..
T Consensus 581 ~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 581 IIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred ccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 223344455555789999999999987765543
No 465
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=75.98 E-value=12 Score=43.01 Aligned_cols=69 Identities=23% Similarity=0.199 Sum_probs=43.5
Q ss_pred EEEEEeCCCeEEEEECCC----CCceeEEec---------------------cCCCCeEEEEEcC----CCCEEEEEeCC
Q 006743 52 LLVTAGDDGTLHLWDTTG----RSPKVSWLK---------------------QHSAPTAGISFSS----DDKIIASVGLD 102 (633)
Q Consensus 52 lLaSGs~DGtI~IWDl~t----~~~~v~~l~---------------------~H~~~VtsLafSP----dg~~LaSgS~D 102 (633)
.|+.+..||.+...+... +........ .-...+..+++.. +..++++.+.|
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 677888899888887653 111111110 1123456666666 77899999999
Q ss_pred CeEEEEeCCCCceeeEee
Q 006743 103 KKLYTYDPGSRRPSSCIT 120 (633)
Q Consensus 103 GtVrIWDlrtgk~v~~i~ 120 (633)
++||+||+.+++++....
T Consensus 240 ~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 240 HTLRIWSLETGQCLATID 257 (547)
T ss_dssp SEEEEEETTTTCEEEEEE
T ss_pred CeEEEEECCCCeEEEEec
Confidence 999999999999977664
No 466
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=75.74 E-value=89 Score=33.78 Aligned_cols=143 Identities=13% Similarity=0.083 Sum_probs=77.6
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC--
Q 006743 7 EHLASISLSGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP-- 83 (633)
Q Consensus 7 ~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~-~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~-- 83 (633)
..+.++..+|.|.-.|..+++.+-...... ...+..-.+..+|. ++.++.++.++.+|..+++.. +...-...
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~--W~~~~~~~~~ 144 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLV--WSRNVGGSPY 144 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEE--EEEecCCCeE
Confidence 355566788999999998888654332211 11222222223664 888899998989998766632 22222221
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCC----eEEEEEecCCCEEEEEEc--CCeEEEEECCCCC
Q 006743 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP----FSSLAFIDDDWILTAGTS--NGRVVFYDIRGKP 155 (633)
Q Consensus 84 VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~----ItsLafSPdG~~LatGs~--DGsV~IWDlrs~~ 155 (633)
+..-..- ....++.++.++.+...|..+++..-....... +..--. -....+..+.. ++.+.-.|+.++.
T Consensus 145 ~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 145 YASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred EecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCc
Confidence 1111111 233444444788999999988887665433221 111001 12334455544 5667777776653
No 467
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=75.06 E-value=39 Score=34.46 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=38.1
Q ss_pred CEEEEEeCCCeEEEEeCCC--CceeeEeeCCCCeEEEEEecCCCEEEEEEcC
Q 006743 94 KIIASVGLDKKLYTYDPGS--RRPSSCITYEAPFSSLAFIDDDWILTAGTSN 143 (633)
Q Consensus 94 ~~LaSgS~DGtVrIWDlrt--gk~v~~i~h~~~ItsLafSPdG~~LatGs~D 143 (633)
+.|+.+...+.|.+||+.. .+....+..-+.|..+.++..|+||++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEee
Confidence 4454446667899999983 3455666777999999999999999987543
No 468
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=74.75 E-value=64 Score=34.42 Aligned_cols=12 Identities=0% Similarity=0.116 Sum_probs=8.4
Q ss_pred CcEEEEECCCCc
Q 006743 16 GDLILHNLASGA 27 (633)
Q Consensus 16 G~I~IWDl~tgk 27 (633)
..|.+||..+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 457888887654
No 469
>PRK05560 DNA gyrase subunit A; Validated
Probab=74.70 E-value=2.1e+02 Score=34.93 Aligned_cols=203 Identities=10% Similarity=0.035 Sum_probs=104.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE---CCCCC--
Q 006743 4 CKDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD---TTGRS-- 71 (633)
Q Consensus 4 pdG~~LaSgs~DG~I~IWDl~tgk-------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWD---l~t~~-- 71 (633)
++...+++.+.+|.|+--.+.+.. -...+.-..++.+..+......+ .|+..+..|.++... +....
T Consensus 496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d-~LllfTs~Grv~~l~v~~iP~~~~~ 574 (805)
T PRK05560 496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHD-TLLFFTNRGRVYRLKVYEIPEASRT 574 (805)
T ss_pred CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCC-eEEEEecCCeEEEEEhhhCcCCCcC
Confidence 345677888899988877654321 11111111233343333334444 355556667766554 33221
Q ss_pred ---cee---EEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCC-------ceeeEeeCCCCeEEEEEecCCCE
Q 006743 72 ---PKV---SWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSR-------RPSSCITYEAPFSSLAFIDDDWI 136 (633)
Q Consensus 72 ---~~v---~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlrtg-------k~v~~i~h~~~ItsLafSPdG~~ 136 (633)
..+ ..+.....-|.++.+.. +..+++..+.+|.++-.++..- .....+...+.+..+........
T Consensus 575 ~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~ 654 (805)
T PRK05560 575 ARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDD 654 (805)
T ss_pred CCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCE
Confidence 001 11233334456666653 6778999999999998776431 11122223445555555555567
Q ss_pred EEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 137 LTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 137 LatGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
|+..+..|.+..+....-.. .. .....+..+.+.++...+.......++..++..+..|.++...+..+..
T Consensus 655 lll~T~~Gr~~r~~~~eIp~----~g--r~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~ 725 (805)
T PRK05560 655 ILLATKNGKAIRFPESDVRP----MG--RTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRL 725 (805)
T ss_pred EEEEECCCcEEEEEhhhcCc----cC--cccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhc
Confidence 88888889888776653211 00 0112344444444333322221112222455556678887776654443
No 470
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=74.60 E-value=25 Score=41.95 Aligned_cols=90 Identities=10% Similarity=0.103 Sum_probs=54.2
Q ss_pred EEEEEcCCCCEEEEEeCCC-----eEEEEeC---CCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 006743 85 AGISFSSDDKIIASVGLDK-----KLYTYDP---GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (633)
Q Consensus 85 tsLafSPdg~~LaSgS~DG-----tVrIWDl---rtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k 156 (633)
..+.|-|+|..+++.+.|| .|.++.. +.|..-...+....+..++|+-....++.+. ...|.+|-..+..-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNYHW 328 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccceEE
Confidence 3478999999999988666 3555543 2233322233445566777876655554443 46799998877521
Q ss_pred ceEEEeecCCCCCeeEEEEccC
Q 006743 157 PLTVLRACSSSEAVSSLCWQRA 178 (633)
Q Consensus 157 ~v~~l~~~~H~~~VtsLafsPd 178 (633)
-++. .-.-..+.-+.|+|.
T Consensus 329 YLK~---e~~ip~~s~vkwhpe 347 (1243)
T COG5290 329 YLKV---ERQIPGISYVKWHPE 347 (1243)
T ss_pred EEEE---eecCCCcceeeeccc
Confidence 1111 122345677899995
No 471
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=72.68 E-value=16 Score=26.09 Aligned_cols=40 Identities=10% Similarity=0.035 Sum_probs=28.1
Q ss_pred CCCCEEEEEe-CCCeEEEEeCCCCceeeEeeCCCCeEEEEE
Q 006743 91 SDDKIIASVG-LDKKLYTYDPGSRRPSSCITYEAPFSSLAF 130 (633)
Q Consensus 91 Pdg~~LaSgS-~DGtVrIWDlrtgk~v~~i~h~~~ItsLaf 130 (633)
|++++|+++. .++.|.++|..+++.+..+........++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4666666555 578999999998888877765555555554
No 472
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=72.67 E-value=23 Score=42.19 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=67.7
Q ss_pred CCEEEEEECCCcEEEEECCC-------C----ce-------eEEEeCCCCCcEEEEEEc--cCCCeEEEEEeCCCeEEEE
Q 006743 6 DEHLASISLSGDLILHNLAS-------G----AK-------AAELKDPNEQVLRVLDYS--RNSRHLLVTAGDDGTLHLW 65 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~t-------g----k~-------v~~~~~~~~~~VssLafS--pdg~~lLaSGs~DGtI~IW 65 (633)
.+.|+.|..||.|.+|.+++ . +. ...+.-.....+..++++ ...+ +||+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EEEEecCCceEEEE
Confidence 45788899999999997621 0 00 001222234456678887 5554 88888888888887
Q ss_pred ECCCC--CceeEEeccCCCCeEEEEEcCCC---C---EEEEEeCCCeEEEEeCC
Q 006743 66 DTTGR--SPKVSWLKQHSAPTAGISFSSDD---K---IIASVGLDKKLYTYDPG 111 (633)
Q Consensus 66 Dl~t~--~~~v~~l~~H~~~VtsLafSPdg---~---~LaSgS~DGtVrIWDlr 111 (633)
-.... +.....-..|...|-+|+|.++. . ++++++-.|.+.+|++.
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 65432 21111122366779999997732 2 78889999999998873
No 473
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=72.34 E-value=87 Score=33.23 Aligned_cols=135 Identities=21% Similarity=0.188 Sum_probs=74.5
Q ss_pred CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCceeeEee-----CCCCeEE
Q 006743 59 DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG------LDKKLYTYDPGSRRPSSCIT-----YEAPFSS 127 (633)
Q Consensus 59 DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS------~DGtVrIWDlrtgk~v~~i~-----h~~~Its 127 (633)
-..|++||..+.+. ...-.+-.+.|+++.|..+.++++.|. ....+..||..+......-. ..++|..
T Consensus 15 C~~lC~yd~~~~qW-~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQW-SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEe-ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 35699999877663 222233557899999986666666664 34578899998765433322 2477888
Q ss_pred EEEec-CC-CEEEEEE-cCC--eEEEEECCCCCCceEEEee--cCCCCCeeEEEEccC-C-CeEEEeccCCCCeEEEEee
Q 006743 128 LAFID-DD-WILTAGT-SNG--RVVFYDIRGKPQPLTVLRA--CSSSEAVSSLCWQRA-K-PVFIDETTCKAETALLGGA 198 (633)
Q Consensus 128 LafSP-dG-~~LatGs-~DG--sV~IWDlrs~~k~v~~l~~--~~H~~~VtsLafsPd-g-~~Las~s~~sd~~lLlSgs 198 (633)
+.+.. |+ ++.+.|. .+| .|..||=.+- ..+.. ......|..+.+-+- . ..-.......+..++++|.
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W----~~i~~~~~~~~t~I~~l~~~~l~~~~~~~~~~~~~~~~Llv~G~ 169 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSW----SSIGSDILGSGTTIRGLQVLPLNSSSHDNSSLFDSDQVLLVTGS 169 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCce----EeccccccCCCCEEEEEEEEeccccccccccccCCCcEEEEEee
Confidence 87754 33 3444444 344 3566654332 22221 233456777766542 1 0111111234566666665
No 474
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=71.25 E-value=1.6e+02 Score=32.04 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=9.4
Q ss_pred CeEEEEECCCCCc
Q 006743 60 GTLHLWDTTGRSP 72 (633)
Q Consensus 60 GtI~IWDl~t~~~ 72 (633)
..|.+||..+...
T Consensus 189 ~~v~~YD~~t~~W 201 (376)
T PRK14131 189 KEVLSYDPSTNQW 201 (376)
T ss_pred ceEEEEECCCCee
Confidence 3588999877653
No 475
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.78 E-value=0.47 Score=53.09 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=91.9
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeeE-ee
Q 006743 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRPSSC-IT 120 (633)
Q Consensus 43 LafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~La-SgS~DGtVrIWDlrtgk~v~~-i~ 120 (633)
..|-+.+.+ ++.++.+..|..||-.+... .. ..-.+...+++|..++..++ .+-..+.+.+||+.+...... .+
T Consensus 40 ~~w~~e~~n-lavaca~tiv~~YD~agq~~--le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 40 HRWRPEGHN-LAVACANTIVIYYDKAGQVI--LE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred eeEecCCCc-eehhhhhhHHHhhhhhccee--cc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 578888775 77777788899999865542 11 12335566788888766554 455677899999986433222 12
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC-CCCCeeEEEEccCCCeEEE
Q 006743 121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS-SSEAVSSLCWQRAKPVFID 184 (633)
Q Consensus 121 h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~k~v~~l~~~~-H~~~VtsLafsPdg~~Las 184 (633)
....-.-+.|++.+..++.|...|.+.||+....... .. .+ |...+++++|.+.+..+.+
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~i---iv-~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI---IV-MGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhh---hh-hcccccceeEEEecccceeeec
Confidence 2222223789998889999999999999998876322 22 24 8899999999997655543
No 476
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=69.91 E-value=91 Score=34.48 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=25.6
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 006743 123 APFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (633)
Q Consensus 123 ~~ItsLafSPdG~~LatGs~DGsV~IWDlrs 153 (633)
..|..++..+..+.+++...+|.|.+||+..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999975
No 477
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=68.27 E-value=92 Score=35.39 Aligned_cols=135 Identities=15% Similarity=0.034 Sum_probs=64.2
Q ss_pred CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC-CCeEEEEEcCC
Q 006743 14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS-APTAGISFSSD 92 (633)
Q Consensus 14 ~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~-~~VtsLafSPd 92 (633)
..+.+.++|. .|..+..+........ .+...++|. +++ +.. ..++.+|+.+.......+.... ..-+.+.+.|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~-~~~~l~nG~-ll~-~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDN-SFKQLPNGN-LLI-GSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--S-SEEE-TTS--EEE-EEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEccCccccc-eeeEcCCCC-EEE-ecC-CceEEEcCCCCEEEeeecCCcccccccccEECCC
Confidence 3456667774 5555544432111110 155678886 444 333 8888888876642222222210 11255777889
Q ss_pred CCEEEEEeC-------------CCeEEEEeCCCCceeeEee---C----C---------------------CCeEEEEEe
Q 006743 93 DKIIASVGL-------------DKKLYTYDPGSRRPSSCIT---Y----E---------------------APFSSLAFI 131 (633)
Q Consensus 93 g~~LaSgS~-------------DGtVrIWDlrtgk~v~~i~---h----~---------------------~~ItsLafS 131 (633)
|++|+.+.. .-.|..+| .+|+.+..+. | . -.+.++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 999888872 11355556 6666554431 1 0 137899999
Q ss_pred c-CCCEEEEEEcCCeEEEEECCCC
Q 006743 132 D-DDWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 132 P-dG~~LatGs~DGsV~IWDlrs~ 154 (633)
+ ++.+|+++-.-..|...|.+++
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS
T ss_pred CCCCeEEEEcCcceEEEEEECCCC
Confidence 9 4445555544558888897766
No 478
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=68.14 E-value=1.7e+02 Score=31.25 Aligned_cols=137 Identities=12% Similarity=0.101 Sum_probs=86.0
Q ss_pred EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 006743 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG 111 (633)
Q Consensus 32 ~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlr 111 (633)
|....+..-..|+-.+||. .-+++...+.|--.|-.+++. ...-.+....-..|..-||+...++-+.. -|.-.|.+
T Consensus 56 fpvp~G~ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpk 132 (353)
T COG4257 56 FPVPNGSAPFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPK 132 (353)
T ss_pred eccCCCCCccccccCCCCc-eEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCc
Confidence 3333445556677888887 677777777777778777773 23333444556777888888776665444 56667776
Q ss_pred CCceeeEe---e-CCCCeEEEEEecCCCEEEEEEcC---------CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 006743 112 SRRPSSCI---T-YEAPFSSLAFIDDDWILTAGTSN---------GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA 178 (633)
Q Consensus 112 tgk~v~~i---~-h~~~ItsLafSPdG~~LatGs~D---------GsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPd 178 (633)
+....... . .........|+++|+.-+++... +.|++|+.. ....-+.||..|+
T Consensus 133 t~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-------------qG~gpyGi~atpd 199 (353)
T COG4257 133 TLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-------------QGGGPYGICATPD 199 (353)
T ss_pred ccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC-------------CCCCCcceEECCC
Confidence 65543322 1 34567888999999988887531 234444443 2344567888886
Q ss_pred CCeEEE
Q 006743 179 KPVFID 184 (633)
Q Consensus 179 g~~Las 184 (633)
|..-++
T Consensus 200 Gsvwya 205 (353)
T COG4257 200 GSVWYA 205 (353)
T ss_pred CcEEEE
Confidence 555443
No 479
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=67.97 E-value=68 Score=36.00 Aligned_cols=82 Identities=13% Similarity=0.046 Sum_probs=54.1
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEc--CCC-----------------CEEE
Q 006743 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFS--SDD-----------------KIIA 97 (633)
Q Consensus 37 ~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~~VtsLafS--Pdg-----------------~~La 97 (633)
...+..|+.+|.++ +.++...=|.|.|+|+..... ++.+++..+.=...-.. ... .+++
T Consensus 307 ~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~v-vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGR-LAAVTDSLGRVLLIDVARGIV-VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCC-EEEEEcCCCcEEEEECCCChh-hhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 34567799999987 777777779999999987763 55566554422111111 111 1345
Q ss_pred EEeCCCeEEEEeCCCCceeeEee
Q 006743 98 SVGLDKKLYTYDPGSRRPSSCIT 120 (633)
Q Consensus 98 SgS~DGtVrIWDlrtgk~v~~i~ 120 (633)
.+-..|.|.||+++++..+..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 56678899999999888776653
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=67.30 E-value=22 Score=40.03 Aligned_cols=150 Identities=14% Similarity=0.137 Sum_probs=86.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce-eEEEeCC-CCCc---EE-EEEEccCCCeEEEEEeCCCeEEEE-ECCC-CCce
Q 006743 2 YNCKDEHLASISLSGDLILHNLASGAK-AAELKDP-NEQV---LR-VLDYSRNSRHLLVTAGDDGTLHLW-DTTG-RSPK 73 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~tgk~-v~~~~~~-~~~~---Vs-sLafSpdg~~lLaSGs~DGtI~IW-Dl~t-~~~~ 73 (633)
..|||+.|++-+. ..+.|+++.+... .+++... .++. |. .+... .|..-+..++.||-|.-| |++. +.+.
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~vsQWFdvr~~~~p~ 305 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGLVSQWFDVRRDGQPH 305 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCceeeeeeeecCCCCc
Confidence 4689998877654 6788888765432 1122111 1111 11 11111 233357788899998877 4432 2222
Q ss_pred eEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 006743 74 VSWL---KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (633)
Q Consensus 74 v~~l---~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~DGsV~IWD 150 (633)
.... +-...+|..+.-..+.+-|++-..+|++..+..-..+.+........+.-++++|.+.++++-. .|.|+++.
T Consensus 306 l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~ 384 (733)
T COG4590 306 LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQ 384 (733)
T ss_pred ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec-CCceEEEE
Confidence 2111 1122334333323345667788888888877765555544434445778899999999987654 47799999
Q ss_pred CCCC
Q 006743 151 IRGK 154 (633)
Q Consensus 151 lrs~ 154 (633)
+++.
T Consensus 385 l~Nr 388 (733)
T COG4590 385 LENR 388 (733)
T ss_pred ecCC
Confidence 8876
No 481
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=66.50 E-value=1.9e+02 Score=31.17 Aligned_cols=143 Identities=14% Similarity=0.057 Sum_probs=91.6
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCC-CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee--EEeccCCC
Q 006743 6 DEHLASISLSGDLILHNLASGAKAAELKDPNE-QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV--SWLKQHSA 82 (633)
Q Consensus 6 G~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~-~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v--~~l~~H~~ 82 (633)
+++...+..+.-++|.|+.+......+..-.. ..-.+ |.-.|+ +...+..|.-+.++|+.+...+. -.......
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn-~aYVadlddgfLivdvsdpssP~lagrya~~~~ 172 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGN-YAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG 172 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCC-EEEEeeccCcEEEEECCCCCCceeeeeeccCCC
Confidence 56777788888899999877654333321112 33343 444466 67777766667788997665332 12222333
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe---eCCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 006743 83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (633)
Q Consensus 83 ~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i---~h~~~ItsLafSPdG~~LatGs~DGsV~IWDlrs~~ 155 (633)
....++.+ |++-..+..|+-+++.|+.....-..+ .....+.++..+++..+++..+ --|.+-|..+..
T Consensus 173 d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~s 244 (370)
T COG5276 173 DTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPS 244 (370)
T ss_pred CceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCC
Confidence 44667776 888888889999999999876544444 3445788888887766655543 347777877664
No 482
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=65.21 E-value=3.3e+02 Score=33.32 Aligned_cols=201 Identities=11% Similarity=0.027 Sum_probs=102.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC---CCCC---
Q 006743 5 KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT---TGRS--- 71 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk-------~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl---~t~~--- 71 (633)
+...+++.+.+|.|+-.++.+-. ....++-..++.+..+......+ .++..+.+|.++.... ....
T Consensus 495 ~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d-~LllfTs~Grv~~l~~~~IP~~~r~~ 573 (800)
T TIGR01063 495 RENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHD-YLLFFTNRGKVYWLKVYQIPEASRTA 573 (800)
T ss_pred cceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCC-eEEEEeCCCcEEEEEhhhCcCCCcCC
Confidence 45567888899988877654311 11111111233444333334444 4556666777665544 2211
Q ss_pred ---ce--eEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCce-------eeEeeCCCCeEEEEEecCCCEE
Q 006743 72 ---PK--VSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRP-------SSCITYEAPFSSLAFIDDDWIL 137 (633)
Q Consensus 72 ---~~--v~~l~~H~~~VtsLafSP--dg~~LaSgS~DGtVrIWDlrtgk~-------v~~i~h~~~ItsLafSPdG~~L 137 (633)
.. ...+.....-|.++.... +..+++..+.+|.++-.++..-.. ...+...+.+..+........|
T Consensus 574 ~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~~~d~l 653 (800)
T TIGR01063 574 KGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTSGDDEV 653 (800)
T ss_pred CCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeCCCCEE
Confidence 00 011223334455555432 566899999999999988653211 1111234445555555555678
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEccCCCCCCC
Q 006743 138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (633)
Q Consensus 138 atGs~DGsV~IWDlrs~~k~v~~l~~~~H~~~VtsLafsPdg~~Las~s~~sd~~lLlSgs~Dg~IkIWDlr~~~~ 213 (633)
+..+..|.+..+....-.. . . .....+..+.+.++.+.+... ...+...++..+..|.++...+..+..
T Consensus 654 ll~Ts~Gr~~r~~v~eIp~--~--g--r~~~Gv~~i~L~~~E~Vv~~~-~v~~~~~ll~vT~~G~~Kr~~l~e~~~ 722 (800)
T TIGR01063 654 MLGSKNGKAVRFPEEDVRP--M--G--RAARGVRGIKLKNEDFVVSLL-VVSEESYLLIVTENGYGKRTSIEEYRE 722 (800)
T ss_pred EEEECCCcEEEEEhhhcCC--c--C--CCCCCeecccCCCCCEEEEEE-EeccccEEEEEecCCcEEEEEHHHccc
Confidence 8888888877776643210 0 0 011233344444433332222 222333455556678777776654443
No 483
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=64.80 E-value=28 Score=24.78 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=24.7
Q ss_pred CCCCEEEEEE-CCCcEEEEECCCCceeEEEeC
Q 006743 4 CKDEHLASIS-LSGDLILHNLASGAKAAELKD 34 (633)
Q Consensus 4 pdG~~LaSgs-~DG~I~IWDl~tgk~v~~~~~ 34 (633)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5788777765 478999999988888877764
No 484
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=64.51 E-value=1.6e+02 Score=35.55 Aligned_cols=147 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred CccCCCCEEEEEECC---CcEEEEECC-CCc-----------eeEEEeCCCCC--------------------cEEEEEE
Q 006743 1 MYNCKDEHLASISLS---GDLILHNLA-SGA-----------KAAELKDPNEQ--------------------VLRVLDY 45 (633)
Q Consensus 1 AFSpdG~~LaSgs~D---G~I~IWDl~-tgk-----------~v~~~~~~~~~--------------------~VssLaf 45 (633)
+|..+|+.++.++.+ +.|++|.+. +.. +...+...... .++.+.|
T Consensus 109 ~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~i 188 (753)
T PF11635_consen 109 APSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEI 188 (753)
T ss_pred eecCCCCEEEEEEccccCCceEEEEEEEeccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEE
Q ss_pred cc------CCCeEEEEEeCCC----eEEEEECCCCCceeEEecc-------------------------CCCCeEEEEEc
Q 006743 46 SR------NSRHLLVTAGDDG----TLHLWDTTGRSPKVSWLKQ-------------------------HSAPTAGISFS 90 (633)
Q Consensus 46 Sp------dg~~lLaSGs~DG----tI~IWDl~t~~~~v~~l~~-------------------------H~~~VtsLafS 90 (633)
-+ ....++++..... .|.-|.+......++.... ....|.+++..
T Consensus 189 ls~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~ 268 (753)
T PF11635_consen 189 LSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSP 268 (753)
T ss_pred eccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEec
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeEe----eCCCCeEE----------------EEEecCCCEEEEEEcCCeEE
Q 006743 91 SDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSS----------------LAFIDDDWILTAGTSNGRVV 147 (633)
Q Consensus 91 Pdg~~LaSgS~DGtVrIWDlrtgk~v~~i----~h~~~Its----------------LafSPdG~~LatGs~DGsV~ 147 (633)
.-+..++..-.||+|.++|..+.+.+... .....|.+ ++|+|.+..++.-..+|.+.
T Consensus 269 ~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 269 ELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
No 485
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=63.89 E-value=1.3e+02 Score=32.76 Aligned_cols=12 Identities=0% Similarity=0.064 Sum_probs=8.4
Q ss_pred cEEEEECCCCce
Q 006743 17 DLILHNLASGAK 28 (633)
Q Consensus 17 ~I~IWDl~tgk~ 28 (633)
.|.+||..+.+-
T Consensus 190 ~v~~YD~~t~~W 201 (376)
T PRK14131 190 EVLSYDPSTNQW 201 (376)
T ss_pred eEEEEECCCCee
Confidence 578888876543
No 486
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=63.40 E-value=89 Score=33.61 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=53.9
Q ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEEe----ccCCCCeEEEEEcCC---CCEEE-EEeCC--------
Q 006743 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSWL----KQHSAPTAGISFSSD---DKIIA-SVGLD-------- 102 (633)
Q Consensus 40 VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~-~~v~~l----~~H~~~VtsLafSPd---g~~La-SgS~D-------- 102 (633)
-+.|+|.|+++ + +.+...|.|++++..... ..+..+ .........++++|+ ..+|+ +.+..
T Consensus 4 P~~~a~~pdG~-l-~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGR-L-LVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSC-E-EEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCc-E-EEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35699999987 4 445779999999943332 122222 234457899999993 23333 33321
Q ss_pred CeEEEEeCCCC--c-----ee-eEee----CCCCeEEEEEecCCCEEEEEEc
Q 006743 103 KKLYTYDPGSR--R-----PS-SCIT----YEAPFSSLAFIDDDWILTAGTS 142 (633)
Q Consensus 103 GtVrIWDlrtg--k-----~v-~~i~----h~~~ItsLafSPdG~~LatGs~ 142 (633)
..|.-|....+ . .+ .... .......|+|.|||.+.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 13444444332 1 11 1112 2345677999999966555443
No 487
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=62.30 E-value=44 Score=32.39 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=26.1
Q ss_pred CCeEEEEEecC------CCEEEEEEcCCeEEEEECCCC
Q 006743 123 APFSSLAFIDD------DWILTAGTSNGRVVFYDIRGK 154 (633)
Q Consensus 123 ~~ItsLafSPd------G~~LatGs~DGsV~IWDlrs~ 154 (633)
..+..++|+|- +-+|++.+.+|.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 47999999994 346888899999999987653
No 488
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=61.73 E-value=2.2e+02 Score=30.12 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=90.3
Q ss_pred cEEEEECCCCceeEEEeCC-----CCCcEEEEEEccCC----CeEEEEE-eCCCeEEEEECCCCCceeEEecc-------
Q 006743 17 DLILHNLASGAKAAELKDP-----NEQVLRVLDYSRNS----RHLLVTA-GDDGTLHLWDTTGRSPKVSWLKQ------- 79 (633)
Q Consensus 17 ~I~IWDl~tgk~v~~~~~~-----~~~~VssLafSpdg----~~lLaSG-s~DGtI~IWDl~t~~~~v~~l~~------- 79 (633)
+|.+||+.+++.++.+.-+ ....+..+.+.... +.+++.. ...+-|.|||+.+++.. +.+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~-Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW-RVLHNSFSPDPD 113 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE-EEETCGCTTS-S
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE-EEecCCcceecc
Confidence 6889999999988877642 24566777776522 1233333 34468999999876521 11111
Q ss_pred ------------CCCCeEEEEEcC---CCCEEEEEeCCC-eEEEEeC---CCCc---------eeeEeeC-CCCeEEEEE
Q 006743 80 ------------HSAPTAGISFSS---DDKIIASVGLDK-KLYTYDP---GSRR---------PSSCITY-EAPFSSLAF 130 (633)
Q Consensus 80 ------------H~~~VtsLafSP---dg~~LaSgS~DG-tVrIWDl---rtgk---------~v~~i~h-~~~ItsLaf 130 (633)
....+..++.+| ++++|+-....+ .++-... ++.. .+..++. ......+++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 122366666665 556666665444 2222221 1111 1223333 346778899
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCCC--ceEEEeecCC-CCCeeEEEEcc
Q 006743 131 IDDDWILTAGTSNGRVVFYDIRGKPQ--PLTVLRACSS-SEAVSSLCWQR 177 (633)
Q Consensus 131 SPdG~~LatGs~DGsV~IWDlrs~~k--~v~~l~~~~H-~~~VtsLafsP 177 (633)
+++|.+.++--..+.|..||..+.-. -..++..-.. -.++..+.+.+
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~ 243 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDP 243 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeecc
Confidence 99999888888999999999987321 1222322222 45778888877
No 489
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=61.73 E-value=3.7 Score=35.25 Aligned_cols=28 Identities=36% Similarity=0.705 Sum_probs=22.5
Q ss_pred CcccccCCCCCcceeecCCCCCCCCCcccccCcccccCcCCC
Q 006743 251 PQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITP 292 (633)
Q Consensus 251 P~r~~l~~g~~l~~l~~~R~~~~~~dd~~vfsPl~dv~p~~~ 292 (633)
||++|...+..+..++ |||++||==+--
T Consensus 1 pYm~h~~~~~~v~~~~--------------F~PfEDvLgvGh 28 (80)
T PF08149_consen 1 PYMTHLKPGSPVESLR--------------FCPFEDVLGVGH 28 (80)
T ss_pred CCccccCCCCeeeeeE--------------EechHHeeEeec
Confidence 6888888888888888 899999755543
No 490
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=60.17 E-value=2.5e+02 Score=30.30 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=78.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC--
Q 006743 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA-- 82 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H~~-- 82 (633)
+|+ |+.++.+|.++.+|..+|+.+..........+..-..-.++ .++.++.++.++..|..++... +......
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~--W~~~~~~~~ 185 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG--TVYVGTDDGHLYALNADTGTLK--WTYETPAPL 185 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc--EEEEecCCCeEEEEEccCCcEE--EEEecCCcc
Confidence 444 77788899999999888998877765330011111222233 3444447788888888776632 2111111
Q ss_pred --CeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeeEeeCCCCeEE-----E-EEec----CCCEEEEEEcCCeEEE
Q 006743 83 --PTAGISFSSDDKIIASVGL--DKKLYTYDPGSRRPSSCITYEAPFSS-----L-AFID----DDWILTAGTSNGRVVF 148 (633)
Q Consensus 83 --~VtsLafSPdg~~LaSgS~--DGtVrIWDlrtgk~v~~i~h~~~Its-----L-afSP----dG~~LatGs~DGsV~I 148 (633)
.+..--. -....++.+.. ++.+.-.|..++...........+.. . .+.. .+..+..+..++.+..
T Consensus 186 ~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~ 264 (370)
T COG1520 186 SLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLC 264 (370)
T ss_pred ccccccCce-eecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEE
Confidence 1111001 12334455555 66788888888877655321111111 0 1100 1233456777788888
Q ss_pred EECCCCC
Q 006743 149 YDIRGKP 155 (633)
Q Consensus 149 WDlrs~~ 155 (633)
.|..+++
T Consensus 265 l~~~~G~ 271 (370)
T COG1520 265 LDADTGE 271 (370)
T ss_pred EEcCCCc
Confidence 8888774
No 491
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=59.92 E-value=3.1e+02 Score=31.25 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=39.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE--e------eCCCCeEEEEEecCC
Q 006743 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC--I------TYEAPFSSLAFIDDD 134 (633)
Q Consensus 79 ~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~--i------~h~~~ItsLafSPdG 134 (633)
..-..-+.|+|.||+++|++--..|.|++++..++..... + ...+....|+++|+-
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3445678999999998776665579999998765432211 1 135678999999874
No 492
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=59.82 E-value=41 Score=38.54 Aligned_cols=68 Identities=24% Similarity=0.272 Sum_probs=40.7
Q ss_pred CCCEEEEEECCCcEEEEECCC----CceeEEE-eCC--------------------CCCcEEEEEEcc---CCCeEEEEE
Q 006743 5 KDEHLASISLSGDLILHNLAS----GAKAAEL-KDP--------------------NEQVLRVLDYSR---NSRHLLVTA 56 (633)
Q Consensus 5 dG~~LaSgs~DG~I~IWDl~t----gk~v~~~-~~~--------------------~~~~VssLafSp---dg~~lLaSG 56 (633)
+...++++..||.+....... +...... ... .......+++.. +++.++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566788888999888887654 2222111 100 123344455555 234589999
Q ss_pred eCCCeEEEEECCCCCc
Q 006743 57 GDDGTLHLWDTTGRSP 72 (633)
Q Consensus 57 s~DGtI~IWDl~t~~~ 72 (633)
+.|+++++||+.++++
T Consensus 237 ~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQC 252 (547)
T ss_dssp ETTSEEEEEETTTTCE
T ss_pred eCCCeEEEEECCCCeE
Confidence 9999999999999885
No 493
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.94 E-value=87 Score=39.10 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=21.2
Q ss_pred CccCCCCEEEEEECCCcEEEEECC
Q 006743 1 MYNCKDEHLASISLSGDLILHNLA 24 (633)
Q Consensus 1 AFSpdG~~LaSgs~DG~I~IWDl~ 24 (633)
||++.-+.+|.+...|.|++|-..
T Consensus 42 afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 42 AFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred eeccccceEEEEEecccEEEeccc
Confidence 588889999999999999999753
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=58.29 E-value=37 Score=29.76 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=32.2
Q ss_pred EeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEecCCCEEEEEEc
Q 006743 99 VGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS 142 (633)
Q Consensus 99 gS~DGtVrIWDlrtgk~v~~i~h~~~ItsLafSPdG~~LatGs~ 142 (633)
+..+|.+..||+.+++....+..-...+.|++++|+.+|+++-.
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 34467899999999987766665568899999999998776643
No 495
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=57.46 E-value=1.3e+02 Score=37.31 Aligned_cols=131 Identities=13% Similarity=0.082 Sum_probs=75.3
Q ss_pred CCcEEEEECC-CCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC-CCCeEEEEEcC
Q 006743 15 SGDLILHNLA-SGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-SAPTAGISFSS 91 (633)
Q Consensus 15 DG~I~IWDl~-tgk~v~~~~~-~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~v~~l~~H-~~~VtsLafSP 91 (633)
+|.++.|++- .++.+.-+.. .-..++ .+.+|... +++ ++....+++||+-..+...++...+ ...|..+++.
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~-~~L-agvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~- 985 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQG-RVL-AGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY- 985 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccc--eEEeccCC-EEE-EecccEEEEeeCChHHHHhhhhhccCceEEEEEeec-
Confidence 3557777653 3332222211 112333 45667666 333 3455889999997766433333333 5667888776
Q ss_pred CCCEEEEEeCCCeEE--EEeCCCCceeeEee--CCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 006743 92 DDKIIASVGLDKKLY--TYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (633)
Q Consensus 92 dg~~LaSgS~DGtVr--IWDlrtgk~v~~i~--h~~~ItsLafSPdG~~LatGs~DGsV~IWDlr 152 (633)
+.+|++|...-.|. .|+....+.+.... ....|+++.+- |...++.+..-|.+.+..+.
T Consensus 986 -~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 986 -GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred -ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 66788877655555 45555555444432 44557766665 45577778777877776554
No 496
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=53.22 E-value=3.9e+02 Score=30.42 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=57.0
Q ss_pred cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEe----c-cCCCCeEEEEEcCCC------CEEEEEe------
Q 006743 39 VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWL----K-QHSAPTAGISFSSDD------KIIASVG------ 100 (633)
Q Consensus 39 ~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~~-v~~l----~-~H~~~VtsLafSPdg------~~LaSgS------ 100 (633)
.-..|+|.|+++ +|++--..|.|++++..+.... +..+ . ........|+++|+- .+|+...
T Consensus 31 ~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 31 KPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 345699999986 5655444699999986544311 1111 1 135678999999863 2343332
Q ss_pred ----CCCeEEEEeCCCC--c---eeeEee-----CCCCeEEEEEecCCCEEEEEEc
Q 006743 101 ----LDKKLYTYDPGSR--R---PSSCIT-----YEAPFSSLAFIDDDWILTAGTS 142 (633)
Q Consensus 101 ----~DGtVrIWDlrtg--k---~v~~i~-----h~~~ItsLafSPdG~~LatGs~ 142 (633)
....|.-|.+... . ...++. ....-..|+|.|||.+.++.+.
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 1234555554321 1 111221 1233557889999976664444
No 497
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.09 E-value=1.9e+02 Score=33.52 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=49.9
Q ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEEC---------CCCCceeEE----------eccCCCCeEEEEEcCC---CCEEE
Q 006743 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDT---------TGRSPKVSW----------LKQHSAPTAGISFSSD---DKIIA 97 (633)
Q Consensus 40 VssLafSpdg~~lLaSGs~DGtI~IWDl---------~t~~~~v~~----------l~~H~~~VtsLafSPd---g~~La 97 (633)
|.-|..++.|. .++-.+-+|.+.++-- +.++..+.+ .....-.+...+|+|+ +.++.
T Consensus 106 V~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 106 VYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 45566788888 5566666786665531 223222211 1111234677899994 57888
Q ss_pred EEeCCCeEEEEeCCCCceeeEe
Q 006743 98 SVGLDKKLYTYDPGSRRPSSCI 119 (633)
Q Consensus 98 SgS~DGtVrIWDlrtgk~v~~i 119 (633)
.-..|++||+||+.....+...
T Consensus 185 iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred EEecCcEEEEEecCCcchhhcc
Confidence 8899999999999876655443
No 498
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=53.03 E-value=3.1e+02 Score=29.13 Aligned_cols=146 Identities=10% Similarity=0.149 Sum_probs=79.7
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEE--ccCCCeE-EEEEeC--CCeEEEEECCCCCceeEEe
Q 006743 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDY--SRNSRHL-LVTAGD--DGTLHLWDTTGRSPKVSWL 77 (633)
Q Consensus 3 SpdG~~LaSgs~DG~I~IWDl~tgk~v~~~~~~~~~~VssLaf--Spdg~~l-LaSGs~--DGtI~IWDl~t~~~~v~~l 77 (633)
+|+...+++.-+.+-++|||+ +|+.++.+....-..|. +.+ --.|+.+ |+++++ ...|.+|.+......+..+
T Consensus 64 ~P~kS~vItt~Kk~Gl~VYDL-sGkqLqs~~~Gk~NNVD-LrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~~L~si 141 (364)
T COG4247 64 NPDKSLVITTVKKAGLRVYDL-SGKQLQSVNPGKYNNVD-LRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQYLESI 141 (364)
T ss_pred CcCcceEEEeeccCCeEEEec-CCCeeeecCCCcccccc-cccCcccCCeEEEEEecccccCCeEEEEEeCCCccceeec
Confidence 577778888888899999998 67777766543222221 222 1123222 333332 4578889886555444433
Q ss_pred ccC-------CCCeEEEEEcCC---C-CEEEEEeCCCeEEEEeCC---CC----ceeeEeeCCCCeEEEEEecCCCEEEE
Q 006743 78 KQH-------SAPTAGISFSSD---D-KIIASVGLDKKLYTYDPG---SR----RPSSCITYEAPFSSLAFIDDDWILTA 139 (633)
Q Consensus 78 ~~H-------~~~VtsLafSPd---g-~~LaSgS~DGtVrIWDlr---tg----k~v~~i~h~~~ItsLafSPdG~~Lat 139 (633)
... ...++.++...+ + -++++...+|.|.-|.+- .+ +.++.+........|.....--.|..
T Consensus 142 tD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYI 221 (364)
T COG4247 142 TDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYI 221 (364)
T ss_pred cCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEE
Confidence 322 234566666542 3 356666777877776653 22 34444443333333433333345556
Q ss_pred EEcCCeEEEEECC
Q 006743 140 GTSNGRVVFYDIR 152 (633)
Q Consensus 140 Gs~DGsV~IWDlr 152 (633)
+-+| +-||...
T Consensus 222 aeEd--vaiWK~~ 232 (364)
T COG4247 222 AEED--VAIWKYE 232 (364)
T ss_pred eecc--ceeeecc
Confidence 6554 5667665
No 499
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=51.75 E-value=4.9e+02 Score=31.12 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=66.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECC-CCceeEEEeCCCCCcEEEEEEccCC--CeEEEEEeCC-CeEEEEECCCC-------
Q 006743 2 YNCKDEHLASISLSGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNS--RHLLVTAGDD-GTLHLWDTTGR------- 70 (633)
Q Consensus 2 FSpdG~~LaSgs~DG~I~IWDl~-tgk~v~~~~~~~~~~VssLafSpdg--~~lLaSGs~D-GtI~IWDl~t~------- 70 (633)
++|+.+.+-.|=....|.-|=+. +.+.+..+.-.....|.|+...... ..+.+.|-.+ +.-++--+...
T Consensus 35 ~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~ 114 (670)
T PF10395_consen 35 FSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDG 114 (670)
T ss_pred cCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccccc
Confidence 45555555555444444444332 6777777776667788887765432 2345555333 33444433222
Q ss_pred -----CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 006743 71 -----SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG 111 (633)
Q Consensus 71 -----~~~v~~l~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlr 111 (633)
......+ .-...|.++.|..+++.+++.-.+|.|.+||..
T Consensus 115 ~~~~e~~~~~~~-kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 115 TVNSETTNEFEL-KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred ccCccccceEEE-EcccceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence 0001122 235789999999999999999999999999993
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=51.45 E-value=1.9e+02 Score=30.05 Aligned_cols=117 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred CccCCCCEEEEEEC---CCcEEEEECCC---CceeEEEeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006743 1 MYNCKDEHLASISL---SGDLILHNLAS---GAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (633)
Q Consensus 1 AFSpdG~~LaSgs~---DG~I~IWDl~t---gk~v~~~~~--~~~~~VssLafSpdg~~lLaSGs~DGtI~IWDl~t~~~ 72 (633)
+|-+||++|.+|+. ...|++++..+ .....+... .....-..+.-.+||+.+++.|...-+..+|.-.....
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~ 152 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP 152 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Q ss_pred eeEEe--------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe
Q 006743 73 KVSWL--------KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI 119 (633)
Q Consensus 73 ~v~~l--------~~H~~~VtsLafSPdg~~LaSgS~DGtVrIWDlrtgk~v~~i 119 (633)
....+ .....----+...|+|++|+.+..+. .|||..+++.++.+
T Consensus 153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Done!